FF:11607-120I5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005048 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005048 | ||
|accession_numbers=CAGE;DRX008317;DRR009189;DRZ000614;DRZ001999;DRZ011964;DRZ013349 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037174;DRR041540;DRZ007182 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0003566,UBERON:0003891,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0001777,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002363 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000084 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor2.CNhs12095.11607-120I5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor2.CNhs12095.11607-120I5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor2.CNhs12095.11607-120I5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor2.CNhs12095.11607-120I5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor2.CNhs12095.11607-120I5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11607-120I5 | |id=FF:11607-120I5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000084 | ||
|is_obsolete= | |||
|library_id=CNhs12095 | |||
|library_id_phase_based=2:CNhs12095 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11607 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.AGTTCC.11607 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11607 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.AGTTCC.11607 | |||
|name=Keratocytes, donor2 | |name=Keratocytes, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12095,LSID839,release011,COMPLETED | |profile_hcage=CNhs12095,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.27483329820609,0.176599635459339,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335209314598171,0,0.154808141838947,0,0,0,-0.0979578962680575,0,0,0.579671155949785,0,0,0,0,0,0,0,0,0,0,0,0,0.0089084248729335,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981395865372765,0,0,0,0.0399330833358623,0.145116470168454,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,-0.057439935027299,-0.210895835276543,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.164469935074116,-0.143515142523472,0,0,0.137553252417658,0,0,0,0,0,0,0,0,0,0.181496416725328,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.0194499193105633,-0.0683442610773682,0,0,0,0,0.496200822922759,0,-0.120879483793741,0.226896115354475,-0.221611588102807,0.217484655602418,-0.04680465889238,0,0,0,-0.0088372704185955,0.276502144359771,0,0,0.122486310721426,-0.0265414767217127,0,0,-0.391044581551635,0,0.155507922803525,0.362021592945203,0,-0.1115127638925,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0,0,-0.0460468993107043,0.180996257720507,0.0256530964133935,1.00472207305983,0.331517881317521,0.0751924368165911,-0.435662855700201,0,-0.302389727009913,0.0625178306816455,-0.350843864418939,0.0399330833358623,0.341130475575461,0.298550605396752,0,0.262451201565037,0.00609621914390568,0,0.451521887231838,0.0449090462478854,0.247420129525439,0.0495274617298644,0,0,0,-0.150267194795826,0,0,0.222513031251873,-0.187597586722075,0.207545294854321,0.0932362240094734,0.195557327245508,-0.173199766640127,0.51217193023743,0.0310958720500044,0,0.237028388664977,0,0.488532324946599,0,0.0666324039979669,0.13209428496524,-0.000949580737076183,0,-0.483977461810981,-0.0683442610773682,0,0.146557348143406,0.490447209333295,0,0.317351374886498,0.133850514857235,0,0,0,0,0,0.215839409672565,-0.539492143030166,-0.232855561555545,0,0.0218609832355148,0,0.187409719950598,0,-0.131316927669479,0.107445522067087,0,0.0169824790816568,0,0.0727272554115283,0.221344523124449,0.199340837819017,0.290232940336909,0.251169456866068,-0.420855650097838,0.0839881965075917,0.2513083410427,-0.300407539843627,0.0785318358351187,1.82629520594496,0,-0.88354475051838,-0.369881847943632,0.0746252235793919,0.16896839276371,0,-0.564072343358274,0,-0.39075217205057,0,0.312017978366072,0.589230927181217,-0.439289374580686,-0.539433152097108,0,0.124801922514314,-0.478514654096081,0,0.0372319105059124,0,0,-0.150367083334639,0.317639183803988,-0.0568422860256427,0.170626826998699,0,0.127926233682906,0,0,-0.106655326428673,-0.235476037764389,0,0.081541383367293,-0.120670589266797,0.313790350877268,-0.115971073434934,0,0,0.272306054079837,0,0.309616283677893,0.00894852862357265,0.151640531865324,-0.131250999012034,0.0562899421911371,0.070454093794601,-0.108622809454255,0,0,0.132088517712717,0,0.090371602434944,0,0,0.301111269369081,0.19298817068776,0,0,0.309616283677893,0,0,0,0,0,0,0,0,-0.519653443531053,-0.354833330216448,0,0.181280180199348,0,0,0,0,0,0,0,0,-0.535450832398425,0,-0.12301741567642,0,0,0,0,0.0938928811244181,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0.154808141838947,-0.057730457053664,0.0774962428806728,0,0,0,-0.27695440160179,0,0,0,0,-0.459129022229833,0,0,0,0,0.245876171997193,-0.0815818795468414,0,0.0593330823739689,0.185203443847981,0.0490497174152864,0,0,-0.261347131789888,0,0,-0.726328037955355,0.227246060712226,0,-0.0209247759461169,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,0.0281044224854234,-0.0922240566585104,0,0,0,0,0,0,0,0.464426301867696,-0.264747311786306,0,0,0,0,0,0,0,0,-0.161809655985349,0,0,0,0,0,-0.0969923612426051,0,0,0,0,0.353199270918678,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.181232049901535,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.195731909968916,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48867625311419,0,0.0263332846944255,-0.0530289756591094,0,0,0.123685520231282,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.133168698817763,-0.128412257984201,0.142936655005599,0,0,0,0.100422569356492,0,0,0.0519036509277272,0,0.242838896258991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335209314598171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.405428866950395,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261394208438839,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309616283677893,-0.0619717175691133,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.0810458255892912,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0.792368848257917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0835457510810115,-0.210895835276543,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.110457913634099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154808141838947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC6525 | |rna_catalog_number=SC6525 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120I5 | |rna_tube_id=120I5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.AGTTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.63211139621636e-223!GO:0005737;cytoplasm;1.31427139337206e-186!GO:0043226;organelle;8.88044098898943e-145!GO:0043229;intracellular organelle;1.27136386036103e-144!GO:0043231;intracellular membrane-bound organelle;2.02121285013004e-144!GO:0043227;membrane-bound organelle;4.95234926289528e-144!GO:0044444;cytoplasmic part;4.300757799797e-142!GO:0044422;organelle part;3.40995029792408e-135!GO:0044446;intracellular organelle part;3.69956273752416e-134!GO:0032991;macromolecular complex;7.63280763398246e-86!GO:0005739;mitochondrion;1.02969755894438e-83!GO:0030529;ribonucleoprotein complex;6.901011051915e-80!GO:0044237;cellular metabolic process;1.87394693225602e-70!GO:0044238;primary metabolic process;1.00991296429787e-68!GO:0043233;organelle lumen;3.03113202185109e-65!GO:0031974;membrane-enclosed lumen;3.03113202185109e-65!GO:0044429;mitochondrial part;1.5906110714366e-57!GO:0005840;ribosome;6.4942374520525e-56!GO:0043170;macromolecule metabolic process;1.08472189499486e-55!GO:0031090;organelle membrane;2.95164057885982e-55!GO:0005515;protein binding;5.62866440644481e-55!GO:0044428;nuclear part;5.18811025580297e-53!GO:0009058;biosynthetic process;5.63673115367009e-52!GO:0003723;RNA binding;3.27096339377981e-51!GO:0003735;structural constituent of ribosome;7.66260001973535e-50!GO:0006412;translation;4.04064832804483e-49!GO:0044249;cellular biosynthetic process;7.93545520248219e-48!GO:0019538;protein metabolic process;1.45240136888368e-46!GO:0031967;organelle envelope;1.90885479735764e-45!GO:0031975;envelope;4.52155277178851e-45!GO:0044260;cellular macromolecule metabolic process;4.3986442173156e-42!GO:0043234;protein complex;4.45724184583742e-42!GO:0009059;macromolecule biosynthetic process;5.00842645918658e-42!GO:0033279;ribosomal subunit;5.29431970144914e-42!GO:0044267;cellular protein metabolic process;3.9432653155323e-41!GO:0005740;mitochondrial envelope;4.01397531350652e-39!GO:0005634;nucleus;2.3153511685525e-37!GO:0005829;cytosol;2.61840694717214e-37!GO:0031966;mitochondrial membrane;1.54512903125249e-36!GO:0016043;cellular component organization and biogenesis;1.64757377855805e-36!GO:0006396;RNA processing;2.38246061882949e-36!GO:0031981;nuclear lumen;1.43881384216053e-33!GO:0019866;organelle inner membrane;7.70877902541304e-33!GO:0005743;mitochondrial inner membrane;1.45701422108896e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.88729511362832e-31!GO:0015031;protein transport;1.66567992269108e-30!GO:0033036;macromolecule localization;4.10854665988056e-29!GO:0043228;non-membrane-bound organelle;6.80340091380177e-28!GO:0043232;intracellular non-membrane-bound organelle;6.80340091380177e-28!GO:0006996;organelle organization and biogenesis;1.27969343438487e-27!GO:0008104;protein localization;2.1490113725089e-27!GO:0016071;mRNA metabolic process;2.17899677266006e-27!GO:0045184;establishment of protein localization;2.29928016497732e-27!GO:0065003;macromolecular complex assembly;1.72858633945555e-26!GO:0046907;intracellular transport;1.47476291044521e-25!GO:0044445;cytosolic part;2.08217490694318e-24!GO:0008380;RNA splicing;9.8282950472784e-24!GO:0006397;mRNA processing;3.18179327800481e-23!GO:0022607;cellular component assembly;3.28791549067203e-23!GO:0043283;biopolymer metabolic process;5.21242752933242e-23!GO:0006259;DNA metabolic process;5.35808183257004e-23!GO:0031980;mitochondrial lumen;1.09897055011809e-22!GO:0005759;mitochondrial matrix;1.09897055011809e-22!GO:0015934;large ribosomal subunit;3.5209644212721e-22!GO:0044455;mitochondrial membrane part;5.82592912533316e-22!GO:0006886;intracellular protein transport;7.45461907389072e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.18153838240768e-21!GO:0006119;oxidative phosphorylation;1.60261879670937e-21!GO:0005783;endoplasmic reticulum;4.66657604805605e-21!GO:0015935;small ribosomal subunit;7.3037590356776e-21!GO:0051186;cofactor metabolic process;4.65807544493786e-20!GO:0005654;nucleoplasm;1.52505972079608e-19!GO:0010467;gene expression;3.33270066933447e-19!GO:0012505;endomembrane system;6.59779584423053e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.52878584163921e-19!GO:0044432;endoplasmic reticulum part;2.30130765079872e-18!GO:0005746;mitochondrial respiratory chain;4.95482053873637e-18!GO:0005681;spliceosome;1.584137915802e-17!GO:0048770;pigment granule;1.584137915802e-17!GO:0042470;melanosome;1.584137915802e-17!GO:0006457;protein folding;1.94674317442169e-17!GO:0016874;ligase activity;5.55992916998796e-17!GO:0007049;cell cycle;5.58821945967707e-17!GO:0044451;nucleoplasm part;1.94713328418521e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.85993112053062e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.01664504475845e-16!GO:0003954;NADH dehydrogenase activity;6.01664504475845e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.01664504475845e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.48925481280631e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.56413449587715e-15!GO:0005730;nucleolus;2.0797082814025e-15!GO:0051649;establishment of cellular localization;4.97605249211548e-15!GO:0051641;cellular localization;5.50473285833628e-15!GO:0006732;coenzyme metabolic process;6.30261728254918e-15!GO:0005761;mitochondrial ribosome;7.02749555256312e-15!GO:0000313;organellar ribosome;7.02749555256312e-15!GO:0000166;nucleotide binding;9.94107233838688e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.84943611438705e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.89879688382961e-14!GO:0042773;ATP synthesis coupled electron transport;2.89879688382961e-14!GO:0016462;pyrophosphatase activity;3.07279016823366e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;3.49563237073796e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.7161698765941e-14!GO:0045271;respiratory chain complex I;5.7161698765941e-14!GO:0005747;mitochondrial respiratory chain complex I;5.7161698765941e-14!GO:0017111;nucleoside-triphosphatase activity;1.22274834442483e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.62681243106479e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.853023190971e-13!GO:0044248;cellular catabolic process;2.26283489444603e-13!GO:0016491;oxidoreductase activity;2.69236725135125e-13!GO:0005794;Golgi apparatus;3.39715460847521e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.45137056484739e-13!GO:0022402;cell cycle process;3.56462542164971e-13!GO:0005789;endoplasmic reticulum membrane;5.25254581126318e-13!GO:0000278;mitotic cell cycle;7.51108224656492e-13!GO:0044265;cellular macromolecule catabolic process;1.05620518220136e-12!GO:0022618;protein-RNA complex assembly;1.77209651291292e-12!GO:0006605;protein targeting;1.80411594030997e-12!GO:0000502;proteasome complex (sensu Eukaryota);4.14700699745697e-12!GO:0009057;macromolecule catabolic process;4.14700699745697e-12!GO:0006512;ubiquitin cycle;4.34510367353463e-12!GO:0009055;electron carrier activity;4.64559409785738e-12!GO:0043285;biopolymer catabolic process;1.28796634617155e-11!GO:0051082;unfolded protein binding;1.29008361285098e-11!GO:0008134;transcription factor binding;2.31680972202895e-11!GO:0008135;translation factor activity, nucleic acid binding;3.48004132253579e-11!GO:0043412;biopolymer modification;6.67971138767863e-11!GO:0051188;cofactor biosynthetic process;7.52801226357971e-11!GO:0017076;purine nucleotide binding;1.31268761164443e-10!GO:0012501;programmed cell death;1.65025761570741e-10!GO:0032553;ribonucleotide binding;2.02586501240399e-10!GO:0032555;purine ribonucleotide binding;2.02586501240399e-10!GO:0005793;ER-Golgi intermediate compartment;2.12506512492656e-10!GO:0006399;tRNA metabolic process;2.16607821232594e-10!GO:0006974;response to DNA damage stimulus;2.21798125092453e-10!GO:0006915;apoptosis;3.07729848269135e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.35763541209698e-10!GO:0000375;RNA splicing, via transesterification reactions;4.35763541209698e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.35763541209698e-10!GO:0048193;Golgi vesicle transport;4.40433153987804e-10!GO:0051276;chromosome organization and biogenesis;4.95239910162197e-10!GO:0044427;chromosomal part;6.99136735778275e-10!GO:0006163;purine nucleotide metabolic process;1.15102383474751e-09!GO:0006464;protein modification process;1.19433727154997e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.40897211562747e-09!GO:0042254;ribosome biogenesis and assembly;1.54744037248138e-09!GO:0008219;cell death;1.74329614929395e-09!GO:0016265;death;1.74329614929395e-09!GO:0065004;protein-DNA complex assembly;1.77378345970654e-09!GO:0005694;chromosome;1.81197489409829e-09!GO:0006091;generation of precursor metabolites and energy;1.83467824407459e-09!GO:0022403;cell cycle phase;1.94726507251573e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.97359396966225e-09!GO:0030554;adenyl nucleotide binding;3.02318835943702e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;3.38733297164249e-09!GO:0032559;adenyl ribonucleotide binding;3.43841249119858e-09!GO:0009259;ribonucleotide metabolic process;3.61177987939314e-09!GO:0006164;purine nucleotide biosynthetic process;3.73363320167637e-09!GO:0000087;M phase of mitotic cell cycle;3.79520558923037e-09!GO:0007067;mitosis;3.80048191258561e-09!GO:0005524;ATP binding;3.89923419187664e-09!GO:0009150;purine ribonucleotide metabolic process;4.33816405038875e-09!GO:0019941;modification-dependent protein catabolic process;4.42974867386061e-09!GO:0043632;modification-dependent macromolecule catabolic process;4.42974867386061e-09!GO:0044257;cellular protein catabolic process;5.04739012319439e-09!GO:0006323;DNA packaging;6.03698640488961e-09!GO:0006511;ubiquitin-dependent protein catabolic process;6.56464710807237e-09!GO:0003743;translation initiation factor activity;6.82740831423825e-09!GO:0030163;protein catabolic process;1.0086895831774e-08!GO:0006260;DNA replication;1.02047882046911e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.09535223883751e-08!GO:0016192;vesicle-mediated transport;1.24299466857953e-08!GO:0007005;mitochondrion organization and biogenesis;1.27599923115781e-08!GO:0016740;transferase activity;1.29244169334425e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.45164134713142e-08!GO:0009056;catabolic process;1.49155759089654e-08!GO:0009260;ribonucleotide biosynthetic process;1.51344450757759e-08!GO:0051726;regulation of cell cycle;1.90666607530758e-08!GO:0006334;nucleosome assembly;1.98494422425611e-08!GO:0005635;nuclear envelope;2.06390950865103e-08!GO:0006281;DNA repair;2.06390950865103e-08!GO:0000074;regulation of progression through cell cycle;2.10764219545229e-08!GO:0000785;chromatin;2.11704318926853e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.57288119086372e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.25271059371955e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.25271059371955e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.25271059371955e-08!GO:0006333;chromatin assembly or disassembly;3.38566801047477e-08!GO:0009719;response to endogenous stimulus;3.54181250245102e-08!GO:0006913;nucleocytoplasmic transport;3.54181250245102e-08!GO:0031497;chromatin assembly;5.27795999631379e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.56993591723494e-08!GO:0009141;nucleoside triphosphate metabolic process;5.74333934171086e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.29916758869622e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.29916758869622e-08!GO:0051169;nuclear transport;6.42460911137109e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.03661430787231e-08!GO:0009117;nucleotide metabolic process;7.57995437942516e-08!GO:0031965;nuclear membrane;8.05350734713375e-08!GO:0009108;coenzyme biosynthetic process;9.76722588175568e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.03440514215202e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.03440514215202e-07!GO:0043038;amino acid activation;1.03440514215202e-07!GO:0006418;tRNA aminoacylation for protein translation;1.03440514215202e-07!GO:0043039;tRNA aminoacylation;1.03440514215202e-07!GO:0006413;translational initiation;1.20458639801394e-07!GO:0042623;ATPase activity, coupled;1.20980618634952e-07!GO:0044453;nuclear membrane part;1.31495690660131e-07!GO:0003712;transcription cofactor activity;1.41731254899479e-07!GO:0017038;protein import;1.43554832612861e-07!GO:0065002;intracellular protein transport across a membrane;1.7427209391485e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.92308886978001e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.92308886978001e-07!GO:0005788;endoplasmic reticulum lumen;2.34061197969463e-07!GO:0043687;post-translational protein modification;3.12433519790831e-07!GO:0008639;small protein conjugating enzyme activity;3.4234356956833e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.72877959622868e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.72877959622868e-07!GO:0016887;ATPase activity;3.86786588444371e-07!GO:0016604;nuclear body;4.05112102623423e-07!GO:0006461;protein complex assembly;4.07890728082734e-07!GO:0009060;aerobic respiration;4.07890728082734e-07!GO:0015986;ATP synthesis coupled proton transport;4.36458066948696e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.36458066948696e-07!GO:0000279;M phase;6.59669456829712e-07!GO:0004842;ubiquitin-protein ligase activity;6.78941755964252e-07!GO:0003676;nucleic acid binding;6.78941755964252e-07!GO:0006446;regulation of translational initiation;6.78941755964252e-07!GO:0042981;regulation of apoptosis;9.30729962946222e-07!GO:0006364;rRNA processing;9.68536241462876e-07!GO:0043067;regulation of programmed cell death;9.9905861264853e-07!GO:0019829;cation-transporting ATPase activity;1.08097936659962e-06!GO:0019787;small conjugating protein ligase activity;1.09474783884093e-06!GO:0008654;phospholipid biosynthetic process;1.16990724074684e-06!GO:0046034;ATP metabolic process;1.30626001677983e-06!GO:0045259;proton-transporting ATP synthase complex;1.5873288157613e-06!GO:0016787;hydrolase activity;1.81241400181099e-06!GO:0008565;protein transporter activity;1.9809912474921e-06!GO:0045333;cellular respiration;2.13609637124704e-06!GO:0016072;rRNA metabolic process;2.38066679839905e-06!GO:0016881;acid-amino acid ligase activity;2.4572905925758e-06!GO:0006082;organic acid metabolic process;2.66273207314336e-06!GO:0016853;isomerase activity;2.68160410354799e-06!GO:0005762;mitochondrial large ribosomal subunit;3.05293520213681e-06!GO:0000315;organellar large ribosomal subunit;3.05293520213681e-06!GO:0030120;vesicle coat;3.19033339599408e-06!GO:0030662;coated vesicle membrane;3.19033339599408e-06!GO:0019752;carboxylic acid metabolic process;3.3446468397355e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.43538671616043e-06!GO:0051301;cell division;3.88708622189651e-06!GO:0005768;endosome;3.93589270950315e-06!GO:0016779;nucleotidyltransferase activity;3.96545649086577e-06!GO:0006754;ATP biosynthetic process;4.25383775178359e-06!GO:0006753;nucleoside phosphate metabolic process;4.25383775178359e-06!GO:0045454;cell redox homeostasis;4.82087658617422e-06!GO:0005643;nuclear pore;4.86440268555899e-06!GO:0044431;Golgi apparatus part;5.48004359093707e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.58884057521756e-06!GO:0019867;outer membrane;5.84476777623648e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.90295211289673e-06!GO:0044440;endosomal part;6.70936929344345e-06!GO:0010008;endosome membrane;6.70936929344345e-06!GO:0051187;cofactor catabolic process;7.23293002366835e-06!GO:0051246;regulation of protein metabolic process;7.41548783720069e-06!GO:0006752;group transfer coenzyme metabolic process;7.68183629501109e-06!GO:0048523;negative regulation of cellular process;8.33143929895527e-06!GO:0003697;single-stranded DNA binding;8.85670757669638e-06!GO:0031968;organelle outer membrane;9.5337747589845e-06!GO:0006099;tricarboxylic acid cycle;1.04634075670836e-05!GO:0046356;acetyl-CoA catabolic process;1.04634075670836e-05!GO:0046930;pore complex;1.0535908172983e-05!GO:0003899;DNA-directed RNA polymerase activity;1.18039022745539e-05!GO:0005667;transcription factor complex;1.26127766253986e-05!GO:0006084;acetyl-CoA metabolic process;1.40794831327542e-05!GO:0044262;cellular carbohydrate metabolic process;1.47356794881568e-05!GO:0048475;coated membrane;1.47853191343279e-05!GO:0030117;membrane coat;1.47853191343279e-05!GO:0008610;lipid biosynthetic process;1.48865894302443e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.57299194030039e-05!GO:0015630;microtubule cytoskeleton;1.62435482830838e-05!GO:0005741;mitochondrial outer membrane;1.86169128590669e-05!GO:0006916;anti-apoptosis;2.15483122591729e-05!GO:0009109;coenzyme catabolic process;2.24343763326324e-05!GO:0005773;vacuole;2.48403069271475e-05!GO:0000786;nucleosome;2.69435385477493e-05!GO:0003924;GTPase activity;2.81268144005144e-05!GO:0016607;nuclear speck;3.56775872030498e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.58593473857631e-05!GO:0019843;rRNA binding;3.80676835898813e-05!GO:0046474;glycerophospholipid biosynthetic process;4.19248758228121e-05!GO:0043069;negative regulation of programmed cell death;4.39488817904041e-05!GO:0006366;transcription from RNA polymerase II promoter;5.23852947476032e-05!GO:0043066;negative regulation of apoptosis;5.44892583889555e-05!GO:0000139;Golgi membrane;6.01144537912119e-05!GO:0016859;cis-trans isomerase activity;6.03423847307011e-05!GO:0031252;leading edge;6.24793553060454e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.54828746652007e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;8.66035299267029e-05!GO:0051329;interphase of mitotic cell cycle;8.67808783473413e-05!GO:0009165;nucleotide biosynthetic process;8.72968278262638e-05!GO:0000245;spliceosome assembly;8.95766262323658e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.13863129544276e-05!GO:0004298;threonine endopeptidase activity;9.26984866798118e-05!GO:0016023;cytoplasmic membrane-bound vesicle;9.53931551251842e-05!GO:0030867;rough endoplasmic reticulum membrane;9.88342075233089e-05!GO:0048519;negative regulation of biological process;0.000104826689004951!GO:0005791;rough endoplasmic reticulum;0.000107920551620208!GO:0051170;nuclear import;0.000113765311509244!GO:0051325;interphase;0.000117292893762101!GO:0006793;phosphorus metabolic process;0.000136256616402974!GO:0006796;phosphate metabolic process;0.000136256616402974!GO:0016568;chromatin modification;0.000138630054465137!GO:0000323;lytic vacuole;0.000139839116372053!GO:0005764;lysosome;0.000139839116372053!GO:0005905;coated pit;0.000142705391951781!GO:0016049;cell growth;0.000153082279461045!GO:0006118;electron transport;0.000153082279461045!GO:0031988;membrane-bound vesicle;0.000154370253244255!GO:0030176;integral to endoplasmic reticulum membrane;0.000156392394476813!GO:0016126;sterol biosynthetic process;0.000162264096920097!GO:0008361;regulation of cell size;0.000169777753698803!GO:0006606;protein import into nucleus;0.000179688549168189!GO:0015980;energy derivation by oxidation of organic compounds;0.000181753472929822!GO:0043623;cellular protein complex assembly;0.000182195413969081!GO:0043566;structure-specific DNA binding;0.000186928235588727!GO:0000314;organellar small ribosomal subunit;0.000187537105583987!GO:0005763;mitochondrial small ribosomal subunit;0.000187537105583987!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000193637865906364!GO:0033116;ER-Golgi intermediate compartment membrane;0.00019551849491949!GO:0016563;transcription activator activity;0.000200143443342364!GO:0008632;apoptotic program;0.000201076019140179!GO:0005770;late endosome;0.000203445493510238!GO:0016567;protein ubiquitination;0.000216131447326774!GO:0045786;negative regulation of progression through cell cycle;0.000228156098725565!GO:0016070;RNA metabolic process;0.000243919673778786!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000254659013757565!GO:0015399;primary active transmembrane transporter activity;0.000254659013757565!GO:0006778;porphyrin metabolic process;0.000254659013757565!GO:0033013;tetrapyrrole metabolic process;0.000254659013757565!GO:0005048;signal sequence binding;0.000274787949545421!GO:0032446;protein modification by small protein conjugation;0.000307700816897686!GO:0031410;cytoplasmic vesicle;0.000338718189195434!GO:0031982;vesicle;0.000371915080103049!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000377315894789729!GO:0006520;amino acid metabolic process;0.000385893994310141!GO:0030880;RNA polymerase complex;0.000403805626616413!GO:0003713;transcription coactivator activity;0.000407571045004313!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000410898922540681!GO:0008026;ATP-dependent helicase activity;0.000428128257465966!GO:0046467;membrane lipid biosynthetic process;0.000428128257465966!GO:0008033;tRNA processing;0.000439076039726401!GO:0019899;enzyme binding;0.000478609533481349!GO:0051789;response to protein stimulus;0.000487931020515526!GO:0006986;response to unfolded protein;0.000487931020515526!GO:0005813;centrosome;0.000526995759425478!GO:0043284;biopolymer biosynthetic process;0.000567547910497904!GO:0006403;RNA localization;0.000575133241984575!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000576295219890152!GO:0006979;response to oxidative stress;0.000578282323742082!GO:0016564;transcription repressor activity;0.000583211523676155!GO:0008250;oligosaccharyl transferase complex;0.000599955288153315!GO:0050657;nucleic acid transport;0.000602546770921564!GO:0051236;establishment of RNA localization;0.000602546770921564!GO:0050658;RNA transport;0.000602546770921564!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000605025572102041!GO:0043681;protein import into mitochondrion;0.000617116248974218!GO:0006626;protein targeting to mitochondrion;0.00063893239928718!GO:0004386;helicase activity;0.000656233689112062!GO:0051427;hormone receptor binding;0.000661518524782955!GO:0006414;translational elongation;0.00069104193850821!GO:0006839;mitochondrial transport;0.000728875427383417!GO:0001558;regulation of cell growth;0.000736440870439294!GO:0006779;porphyrin biosynthetic process;0.00076789132801168!GO:0033014;tetrapyrrole biosynthetic process;0.00076789132801168!GO:0042802;identical protein binding;0.000768013511237335!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000846634244461249!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00087269825452267!GO:0015002;heme-copper terminal oxidase activity;0.00087269825452267!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00087269825452267!GO:0004129;cytochrome-c oxidase activity;0.00087269825452267!GO:0046483;heterocycle metabolic process;0.000919245967285231!GO:0016310;phosphorylation;0.000956604919205998!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000996763299867869!GO:0000428;DNA-directed RNA polymerase complex;0.000996763299867869!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00100949312637536!GO:0006066;alcohol metabolic process;0.00103641759091134!GO:0005798;Golgi-associated vesicle;0.00103798838405616!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00104327317210502!GO:0007006;mitochondrial membrane organization and biogenesis;0.00107715084637738!GO:0042168;heme metabolic process;0.00115914805604865!GO:0031324;negative regulation of cellular metabolic process;0.00120779981806885!GO:0006695;cholesterol biosynthetic process;0.00122079848871682!GO:0030036;actin cytoskeleton organization and biogenesis;0.00124465319690975!GO:0035257;nuclear hormone receptor binding;0.00126049823386577!GO:0003714;transcription corepressor activity;0.00129982402406985!GO:0005769;early endosome;0.00131615197735367!GO:0005815;microtubule organizing center;0.00135370715815725!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00135706556950854!GO:0018196;peptidyl-asparagine modification;0.00138437941728403!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00138437941728403!GO:0006613;cotranslational protein targeting to membrane;0.00140027246805095!GO:0000151;ubiquitin ligase complex;0.00141646486406819!GO:0048522;positive regulation of cellular process;0.00150202412072219!GO:0006261;DNA-dependent DNA replication;0.00154693346657232!GO:0005819;spindle;0.00156175694372709!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00157854452917671!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00157854452917671!GO:0051920;peroxiredoxin activity;0.00164504274750955!GO:0046489;phosphoinositide biosynthetic process;0.00167732783587983!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00171398968727681!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00185320248996575!GO:0019318;hexose metabolic process;0.00185717769338485!GO:0043021;ribonucleoprotein binding;0.00185717769338485!GO:0015992;proton transport;0.00204537592878366!GO:0031902;late endosome membrane;0.00204838002413165!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00211763989018299!GO:0043488;regulation of mRNA stability;0.00218267794803288!GO:0043487;regulation of RNA stability;0.00218267794803288!GO:0005525;GTP binding;0.00218267794803288!GO:0006818;hydrogen transport;0.00219916736973115!GO:0043492;ATPase activity, coupled to movement of substances;0.00221659795824472!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00222361367530957!GO:0030133;transport vesicle;0.00226067355888724!GO:0005996;monosaccharide metabolic process;0.00230257252979217!GO:0048037;cofactor binding;0.00237471265239838!GO:0005774;vacuolar membrane;0.00239982465255037!GO:0065009;regulation of a molecular function;0.00240704675349755!GO:0050662;coenzyme binding;0.00247861513751478!GO:0004576;oligosaccharyl transferase activity;0.00249444022314717!GO:0006595;polyamine metabolic process;0.00250521169210248!GO:0005684;U2-dependent spliceosome;0.002590884563372!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0027815473763204!GO:0006807;nitrogen compound metabolic process;0.00284076111558187!GO:0005885;Arp2/3 protein complex;0.00297230134278277!GO:0030132;clathrin coat of coated pit;0.00306092025569784!GO:0003684;damaged DNA binding;0.00311835693102684!GO:0006740;NADPH regeneration;0.00316860245730618!GO:0006098;pentose-phosphate shunt;0.00316860245730618!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00316860245730618!GO:0006783;heme biosynthetic process;0.00346137694769353!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00356966488667455!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00356966488667455!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00356966488667455!GO:0016741;transferase activity, transferring one-carbon groups;0.00358882237885759!GO:0008168;methyltransferase activity;0.0039216556344717!GO:0016125;sterol metabolic process;0.00410376808093883!GO:0016044;membrane organization and biogenesis;0.00413030627565874!GO:0007010;cytoskeleton organization and biogenesis;0.00414605487257656!GO:0005657;replication fork;0.00426807079082297!GO:0051028;mRNA transport;0.00437716790957458!GO:0006650;glycerophospholipid metabolic process;0.00473805169563275!GO:0008637;apoptotic mitochondrial changes;0.0049914115628953!GO:0044437;vacuolar part;0.00538476636491658!GO:0017166;vinculin binding;0.00567111852994789!GO:0008652;amino acid biosynthetic process;0.00580164466088526!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00594665864369752!GO:0022890;inorganic cation transmembrane transporter activity;0.00625725468987186!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00643866814664112!GO:0004177;aminopeptidase activity;0.00643866814664112!GO:0009892;negative regulation of metabolic process;0.00647478760367637!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00666640618338593!GO:0003724;RNA helicase activity;0.00674017733662675!GO:0009308;amine metabolic process;0.00699188607186783!GO:0006519;amino acid and derivative metabolic process;0.00700016350155616!GO:0040008;regulation of growth;0.00723421545355594!GO:0006612;protein targeting to membrane;0.00725110467697183!GO:0006401;RNA catabolic process;0.00725115989270823!GO:0030029;actin filament-based process;0.00734562571849087!GO:0030027;lamellipodium;0.00749823932961142!GO:0016272;prefoldin complex;0.00758164619570492!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00768923630783643!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0078545119575944!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00800920555736374!GO:0005765;lysosomal membrane;0.00822458741203852!GO:0006007;glucose catabolic process;0.00848985166563421!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00859406972564458!GO:0051252;regulation of RNA metabolic process;0.00873301323613499!GO:0006509;membrane protein ectodomain proteolysis;0.00875762856577278!GO:0033619;membrane protein proteolysis;0.00875762856577278!GO:0019206;nucleoside kinase activity;0.00892092561004543!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00911324317206214!GO:0030145;manganese ion binding;0.00918025665534464!GO:0006739;NADP metabolic process;0.00925268563378646!GO:0007050;cell cycle arrest;0.00927442196916935!GO:0007040;lysosome organization and biogenesis;0.00932385639227399!GO:0006733;oxidoreduction coenzyme metabolic process;0.00939076913898215!GO:0048468;cell development;0.00949694968695145!GO:0031072;heat shock protein binding;0.00954350842170167!GO:0044255;cellular lipid metabolic process;0.00954350842170167!GO:0051287;NAD binding;0.00994067893247859!GO:0032561;guanyl ribonucleotide binding;0.0105017910356116!GO:0019001;guanyl nucleotide binding;0.0105017910356116!GO:0051168;nuclear export;0.0107409067478429!GO:0006402;mRNA catabolic process;0.0107414812620343!GO:0030658;transport vesicle membrane;0.0107895956757115!GO:0006289;nucleotide-excision repair;0.0107895956757115!GO:0000075;cell cycle checkpoint;0.0109816270326531!GO:0006506;GPI anchor biosynthetic process;0.011046241339444!GO:0016860;intramolecular oxidoreductase activity;0.0110552485271413!GO:0000082;G1/S transition of mitotic cell cycle;0.0110690818289071!GO:0008139;nuclear localization sequence binding;0.0112448562166928!GO:0030663;COPI coated vesicle membrane;0.0114697015058568!GO:0030126;COPI vesicle coat;0.0114697015058568!GO:0030118;clathrin coat;0.0114697015058568!GO:0005874;microtubule;0.0114697015058568!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0114697015058568!GO:0044452;nucleolar part;0.0115529260478166!GO:0006383;transcription from RNA polymerase III promoter;0.0116713350608017!GO:0015631;tubulin binding;0.0116902766603143!GO:0006950;response to stress;0.0118952445786624!GO:0000049;tRNA binding;0.0119953796637259!GO:0006497;protein amino acid lipidation;0.0122452718772825!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0124231549865882!GO:0003729;mRNA binding;0.012539581889055!GO:0048471;perinuclear region of cytoplasm;0.0130312642608199!GO:0030137;COPI-coated vesicle;0.0132047093557206!GO:0005975;carbohydrate metabolic process;0.0142982742894465!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.014312087052086!GO:0031418;L-ascorbic acid binding;0.014312087052086!GO:0006268;DNA unwinding during replication;0.0143810237572769!GO:0019798;procollagen-proline dioxygenase activity;0.0145036803303492!GO:0006790;sulfur metabolic process;0.0145177983069594!GO:0016481;negative regulation of transcription;0.0146980859178556!GO:0005758;mitochondrial intermembrane space;0.0148422535836602!GO:0048518;positive regulation of biological process;0.0149672056695152!GO:0006767;water-soluble vitamin metabolic process;0.0152566011124652!GO:0032508;DNA duplex unwinding;0.0153720859862327!GO:0032392;DNA geometric change;0.0153720859862327!GO:0051348;negative regulation of transferase activity;0.0156155450349184!GO:0033559;unsaturated fatty acid metabolic process;0.0156504084112519!GO:0006636;unsaturated fatty acid biosynthetic process;0.0156504084112519!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0158438137171437!GO:0033673;negative regulation of kinase activity;0.0158562153501385!GO:0006469;negative regulation of protein kinase activity;0.0158562153501385!GO:0042158;lipoprotein biosynthetic process;0.016102186361716!GO:0007033;vacuole organization and biogenesis;0.0162809151316621!GO:0030041;actin filament polymerization;0.0164461315155558!GO:0043189;H4/H2A histone acetyltransferase complex;0.01648577079461!GO:0045941;positive regulation of transcription;0.0165419029552242!GO:0006505;GPI anchor metabolic process;0.0165612230210111!GO:0051087;chaperone binding;0.0165612230210111!GO:0007088;regulation of mitosis;0.016665507747936!GO:0048487;beta-tubulin binding;0.0175343558088159!GO:0001726;ruffle;0.0176938803704569!GO:0000059;protein import into nucleus, docking;0.0180471842345499!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0182420659040732!GO:0030134;ER to Golgi transport vesicle;0.0182814159616522!GO:0008094;DNA-dependent ATPase activity;0.0183289801509988!GO:0030119;AP-type membrane coat adaptor complex;0.0184177865063049!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0185147230210054!GO:0022415;viral reproductive process;0.0191585723212993!GO:0006749;glutathione metabolic process;0.0192008033318174!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0192842593783748!GO:0007051;spindle organization and biogenesis;0.0192842593783748!GO:0051539;4 iron, 4 sulfur cluster binding;0.0200339639004083!GO:0000096;sulfur amino acid metabolic process;0.020443904061762!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0204674369927191!GO:0000123;histone acetyltransferase complex;0.0206506292542462!GO:0006629;lipid metabolic process;0.0207794911644068!GO:0035035;histone acetyltransferase binding;0.0210732082674705!GO:0003756;protein disulfide isomerase activity;0.0216078727577898!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0216078727577898!GO:0030659;cytoplasmic vesicle membrane;0.0216078727577898!GO:0035258;steroid hormone receptor binding;0.0219016662430357!GO:0031272;regulation of pseudopodium formation;0.0219016662430357!GO:0031269;pseudopodium formation;0.0219016662430357!GO:0031344;regulation of cell projection organization and biogenesis;0.0219016662430357!GO:0031268;pseudopodium organization and biogenesis;0.0219016662430357!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0219016662430357!GO:0031274;positive regulation of pseudopodium formation;0.0219016662430357!GO:0030660;Golgi-associated vesicle membrane;0.0219016662430357!GO:0045893;positive regulation of transcription, DNA-dependent;0.0219016662430357!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0221612374958973!GO:0031543;peptidyl-proline dioxygenase activity;0.0223231844128832!GO:0030125;clathrin vesicle coat;0.0223231844128832!GO:0030665;clathrin coated vesicle membrane;0.0223231844128832!GO:0030508;thiol-disulfide exchange intermediate activity;0.0225409001824393!GO:0004518;nuclease activity;0.0226500275209504!GO:0008186;RNA-dependent ATPase activity;0.022691939606128!GO:0007346;regulation of progression through mitotic cell cycle;0.0229065954130177!GO:0005100;Rho GTPase activator activity;0.0235016241052993!GO:0008047;enzyme activator activity;0.023593135794818!GO:0009303;rRNA transcription;0.0241258989126258!GO:0006458;'de novo' protein folding;0.0242632799531256!GO:0051084;'de novo' posttranslational protein folding;0.0242632799531256!GO:0051540;metal cluster binding;0.0243241747716214!GO:0051536;iron-sulfur cluster binding;0.0243241747716214!GO:0030308;negative regulation of cell growth;0.024551569326405!GO:0006643;membrane lipid metabolic process;0.024700606944616!GO:0006891;intra-Golgi vesicle-mediated transport;0.0248259728328897!GO:0009112;nucleobase metabolic process;0.0259040014632042!GO:0045792;negative regulation of cell size;0.0259040014632042!GO:0050178;phenylpyruvate tautomerase activity;0.0262751331743146!GO:0030127;COPII vesicle coat;0.0265637106265029!GO:0012507;ER to Golgi transport vesicle membrane;0.0265637106265029!GO:0043281;regulation of caspase activity;0.0265637106265029!GO:0005869;dynactin complex;0.0271186918840368!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0273414995644537!GO:0031970;organelle envelope lumen;0.0276149917122136!GO:0035267;NuA4 histone acetyltransferase complex;0.0279773398287359!GO:0030131;clathrin adaptor complex;0.0280248239277227!GO:0032981;mitochondrial respiratory chain complex I assembly;0.028358134762454!GO:0010257;NADH dehydrogenase complex assembly;0.028358134762454!GO:0033108;mitochondrial respiratory chain complex assembly;0.028358134762454!GO:0031301;integral to organelle membrane;0.0289474954107844!GO:0006644;phospholipid metabolic process;0.029910945292554!GO:0000084;S phase of mitotic cell cycle;0.0299711295511745!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0302599230397775!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0302599230397775!GO:0046365;monosaccharide catabolic process;0.0307046285618904!GO:0006220;pyrimidine nucleotide metabolic process;0.0307427249814226!GO:0008538;proteasome activator activity;0.0312682697365055!GO:0006352;transcription initiation;0.0319102908667789!GO:0008629;induction of apoptosis by intracellular signals;0.0327068909361221!GO:0000209;protein polyubiquitination;0.0330157505528635!GO:0004364;glutathione transferase activity;0.0338099602120661!GO:0050790;regulation of catalytic activity;0.0339160554913666!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0342402777383426!GO:0008203;cholesterol metabolic process;0.0348185129723543!GO:0043065;positive regulation of apoptosis;0.0348185129723543!GO:0004860;protein kinase inhibitor activity;0.0350753331761441!GO:0000118;histone deacetylase complex;0.0352133356170306!GO:0015036;disulfide oxidoreductase activity;0.0352133356170306!GO:0046426;negative regulation of JAK-STAT cascade;0.0353223068656238!GO:0007021;tubulin folding;0.035368332922406!GO:0005637;nuclear inner membrane;0.0354773337035783!GO:0031901;early endosome membrane;0.0355409611246416!GO:0003746;translation elongation factor activity;0.0357404836291412!GO:0016407;acetyltransferase activity;0.0357718662432335!GO:0006611;protein export from nucleus;0.0357988313645969!GO:0030433;ER-associated protein catabolic process;0.0357988313645969!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0357988313645969!GO:0006769;nicotinamide metabolic process;0.03603959811978!GO:0006730;one-carbon compound metabolic process;0.0361036060655482!GO:0031124;mRNA 3'-end processing;0.0362217678162174!GO:0043068;positive regulation of programmed cell death;0.0378685806975258!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0379188459144307!GO:0043433;negative regulation of transcription factor activity;0.0380820140133897!GO:0019320;hexose catabolic process;0.0381863164724889!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0383462289391907!GO:0045936;negative regulation of phosphate metabolic process;0.0394034071782992!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0395693929274859!GO:0043154;negative regulation of caspase activity;0.040395550186877!GO:0031529;ruffle organization and biogenesis;0.0406409675931332!GO:0003711;transcription elongation regulator activity;0.0406945827552386!GO:0046519;sphingoid metabolic process;0.0407124940805104!GO:0009451;RNA modification;0.0412047038525058!GO:0001836;release of cytochrome c from mitochondria;0.041549318339455!GO:0000775;chromosome, pericentric region;0.0421457883094398!GO:0000287;magnesium ion binding;0.0423969865379188!GO:0016835;carbon-oxygen lyase activity;0.0423969865379188!GO:0045926;negative regulation of growth;0.0423969865379188!GO:0044438;microbody part;0.0427940711293907!GO:0044439;peroxisomal part;0.0427940711293907!GO:0006368;RNA elongation from RNA polymerase II promoter;0.042950441234522!GO:0006541;glutamine metabolic process;0.0432818975815973!GO:0030833;regulation of actin filament polymerization;0.0432818975815973!GO:0004004;ATP-dependent RNA helicase activity;0.0433511907081045!GO:0051059;NF-kappaB binding;0.044228984715055!GO:0006596;polyamine biosynthetic process;0.044228984715055!GO:0048500;signal recognition particle;0.0451768453423955!GO:0005862;muscle thin filament tropomyosin;0.0453900194931556!GO:0046128;purine ribonucleoside metabolic process;0.0455280320629959!GO:0042278;purine nucleoside metabolic process;0.0455280320629959!GO:0043022;ribosome binding;0.045598880304734!GO:0030384;phosphoinositide metabolic process;0.0456728409540898!GO:0005881;cytoplasmic microtubule;0.0456785638642273!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0457089974590617!GO:0006672;ceramide metabolic process;0.0465344355372674!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0468504343678195!GO:0004680;casein kinase activity;0.0475028576687675!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0482080090560004!GO:0030911;TPR domain binding;0.0482081070934217!GO:0031625;ubiquitin protein ligase binding;0.0482386151929302!GO:0005832;chaperonin-containing T-complex;0.0482386151929302!GO:0003678;DNA helicase activity;0.0488369197696421!GO:0046164;alcohol catabolic process;0.0490539790193973 | |||
|sample_id=11607 | |sample_id=11607 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=NR5A1,2:1.83492076144;RXRA_VDR{dimer}:1.53045400439;TFCP2:1.44820743094;STAT5{A,B}:1.37619584944;EBF1:1.33010908413;ZNF238:1.32814785276;ZNF423:1.28657058624;HES1:1.24014043357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.21358037768;GZF1:1.10806465524;GTF2A1,2:1.08166025218;TFAP4:1.03119679078;PBX1:0.897824488157;ESRRA:0.896521249723;HOX{A5,B5}:0.874832074876;bHLH_family:0.8643329232;TLX1..3_NFIC{dimer}:0.79790939408;LHX3,4:0.780119093895;GLI1..3:0.766413139092;ZNF148:0.761256259161;NKX2-2,8:0.716630690983;RXR{A,B,G}:0.680980613964;HAND1,2:0.640085843402;GFI1B:0.595804197381;POU2F1..3:0.555563993931;PAX5:0.544452300441;NFE2L1:0.532067077945;ESR1:0.51889285202;TAL1_TCF{3,4,12}:0.503474095798;ZBTB6:0.457495344844;AR:0.439759771461;NR1H4:0.438424794961;XCPE1{core}:0.398748683903;TP53:0.375941882639;MTF1:0.356848001328;HNF4A_NR2F1,2:0.33526857269;BACH2:0.32575955181;HIC1:0.30698354614;TBP:0.292313240911;TFAP2{A,C}:0.29022713254;TBX4,5:0.280653653677;POU1F1:0.270967849862;TOPORS:0.263570994563;CRX:0.252043803003;NR3C1:0.250557115123;POU5F1:0.241566690922;NFE2L2:0.241245852997;PPARG:0.240629017226;GFI1:0.237590543179;IKZF1:0.223179073645;TFAP2B:0.212676725498;FOS_FOS{B,L1}_JUN{B,D}:0.203814007718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.199419312763;RREB1:0.18213377158;PAX1,9:0.177151267597;NANOG:0.167298647102;LMO2:0.160715639734;HNF1A:0.131326107375;CEBPA,B_DDIT3:0.12785262913;NFE2:0.123534859596;REST:0.119856334846;TEAD1:0.107796364661;PRRX1,2:0.107739127024;HOX{A6,A7,B6,B7}:0.105627546339;ZIC1..3:0.100518997905;MYB:0.0876058316612;SP1:0.0729256653791;GTF2I:0.0692198497435;KLF4:0.0670420848612;MYOD1:0.044425031123;HMX1:0.0295339095419;TFDP1:0.0216015135355;MYBL2:0.0187787602569;NFY{A,B,C}:0.0142544055252;UFEwm:0.0114465466305;GATA6:-0.00566347185418;ATF6:-0.00566380047683;NFIX:-0.00993094668653;ALX4:-0.0143740151891;EN1,2:-0.0175329431832;HLF:-0.02252000405;SPZ1:-0.0235687347418;SOX{8,9,10}:-0.0321521014921;VSX1,2:-0.0688052603896;POU3F1..4:-0.0692289715655;NHLH1,2:-0.111339985481;NKX2-3_NKX2-5:-0.115855768225;SOX5:-0.131811315611;RORA:-0.133717329626;FOSL2:-0.137635043679;HOXA9_MEIS1:-0.141418152485;NR6A1:-0.147997407407;SOX17:-0.166622676265;MEF2{A,B,C,D}:-0.169821593769;NANOG{mouse}:-0.177108538099;PAX3,7:-0.178915321966;POU6F1:-0.185022858294;LEF1_TCF7_TCF7L1,2:-0.197678861663;E2F1..5:-0.201242206643;RUNX1..3:-0.20984883514;HOX{A4,D4}:-0.211491588921;FOXL1:-0.220757812233;YY1:-0.233647063992;CUX2:-0.240481459527;NFATC1..3:-0.241431763426;NFKB1_REL_RELA:-0.251559594264;DBP:-0.26113811625;NKX3-1:-0.274688922684;OCT4_SOX2{dimer}:-0.281455188193;FOX{I1,J2}:-0.285910118843;RFX1:-0.29448572514;ZNF143:-0.31561315796;SRF:-0.320740826939;FOXD3:-0.332019515103;SNAI1..3:-0.336458847336;BREu{core}:-0.344712927632;STAT2,4,6:-0.350051309701;ONECUT1,2:-0.356652846605;GCM1,2:-0.414433529639;NKX6-1,2:-0.439515175419;ETS1,2:-0.445464003872;T:-0.458331943684;FOXQ1:-0.467872291262;PATZ1:-0.468302013863;HIF1A:-0.47926373097;FOX{F1,F2,J1}:-0.500824360334;XBP1:-0.508177226566;ADNP_IRX_SIX_ZHX:-0.519301003712;AHR_ARNT_ARNT2:-0.537192667361;SMAD1..7,9:-0.546398807724;PAX6:-0.552707414745;MZF1:-0.558216719811;SPIB:-0.55926085652;NKX2-1,4:-0.560591075123;MYFfamily:-0.563894980482;JUN:-0.56782859837;NFIL3:-0.572737531313;FOXA2:-0.579916318855;SPI1:-0.581446985593;MED-1{core}:-0.591540616242;TEF:-0.592167163609;EGR1..3:-0.598575278091;EP300:-0.619572265986;CDC5L:-0.648060179085;FOXP3:-0.65569247439;TGIF1:-0.659752651323;PRDM1:-0.672954425633;ATF2:-0.691496993389;NKX3-2:-0.716036927832;ZEB1:-0.720010593687;TLX2:-0.721445264173;FOXM1:-0.746453567439;MTE{core}:-0.748086744992;NRF1:-0.754344370129;ATF5_CREB3:-0.768331567673;PITX1..3:-0.774042220738;MAFB:-0.794997487178;MAZ:-0.835499528104;RFX2..5_RFXANK_RFXAP:-0.83794627462;CREB1:-0.853001124061;ARID5B:-0.855369603746;PAX8:-0.858419442681;SOX2:-0.865447209803;ZNF384:-0.872618730016;HSF1,2:-0.876650612883;AIRE:-0.883237476071;ELK1,4_GABP{A,B1}:-0.907147324908;DMAP1_NCOR{1,2}_SMARC:-0.935507477807;CDX1,2,4:-0.938450810554;HBP1_HMGB_SSRP1_UBTF:-0.955141179114;IRF1,2:-0.96182520641;PAX2:-0.967557445245;EVI1:-0.978191028188;GATA4:-0.980592981737;ELF1,2,4:-0.997056134082;IRF7:-1.03359271661;FOXO1,3,4:-1.03863064702;FOX{D1,D2}:-1.08300881711;PAX4:-1.08520627123;ZFP161:-1.08850301726;FOXP1:-1.09375508582;ALX1:-1.12111061304;ATF4:-1.26484538545;ZBTB16:-1.29917925632;IKZF2:-1.40279219917;STAT1,3:-1.41728549501;HMGA1,2:-1.45328038227;BPTF:-1.49775930872;PDX1:-1.52996906084;SREBF1,2:-1.70827028175;FOXN1:-2.09708180385;RBPJ:-2.21403206784 | |top_motifs=NR5A1,2:1.83492076144;RXRA_VDR{dimer}:1.53045400439;TFCP2:1.44820743094;STAT5{A,B}:1.37619584944;EBF1:1.33010908413;ZNF238:1.32814785276;ZNF423:1.28657058624;HES1:1.24014043357;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.21358037768;GZF1:1.10806465524;GTF2A1,2:1.08166025218;TFAP4:1.03119679078;PBX1:0.897824488157;ESRRA:0.896521249723;HOX{A5,B5}:0.874832074876;bHLH_family:0.8643329232;TLX1..3_NFIC{dimer}:0.79790939408;LHX3,4:0.780119093895;GLI1..3:0.766413139092;ZNF148:0.761256259161;NKX2-2,8:0.716630690983;RXR{A,B,G}:0.680980613964;HAND1,2:0.640085843402;GFI1B:0.595804197381;POU2F1..3:0.555563993931;PAX5:0.544452300441;NFE2L1:0.532067077945;ESR1:0.51889285202;TAL1_TCF{3,4,12}:0.503474095798;ZBTB6:0.457495344844;AR:0.439759771461;NR1H4:0.438424794961;XCPE1{core}:0.398748683903;TP53:0.375941882639;MTF1:0.356848001328;HNF4A_NR2F1,2:0.33526857269;BACH2:0.32575955181;HIC1:0.30698354614;TBP:0.292313240911;TFAP2{A,C}:0.29022713254;TBX4,5:0.280653653677;POU1F1:0.270967849862;TOPORS:0.263570994563;CRX:0.252043803003;NR3C1:0.250557115123;POU5F1:0.241566690922;NFE2L2:0.241245852997;PPARG:0.240629017226;GFI1:0.237590543179;IKZF1:0.223179073645;TFAP2B:0.212676725498;FOS_FOS{B,L1}_JUN{B,D}:0.203814007718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.199419312763;RREB1:0.18213377158;PAX1,9:0.177151267597;NANOG:0.167298647102;LMO2:0.160715639734;HNF1A:0.131326107375;CEBPA,B_DDIT3:0.12785262913;NFE2:0.123534859596;REST:0.119856334846;TEAD1:0.107796364661;PRRX1,2:0.107739127024;HOX{A6,A7,B6,B7}:0.105627546339;ZIC1..3:0.100518997905;MYB:0.0876058316612;SP1:0.0729256653791;GTF2I:0.0692198497435;KLF4:0.0670420848612;MYOD1:0.044425031123;HMX1:0.0295339095419;TFDP1:0.0216015135355;MYBL2:0.0187787602569;NFY{A,B,C}:0.0142544055252;UFEwm:0.0114465466305;GATA6:-0.00566347185418;ATF6:-0.00566380047683;NFIX:-0.00993094668653;ALX4:-0.0143740151891;EN1,2:-0.0175329431832;HLF:-0.02252000405;SPZ1:-0.0235687347418;SOX{8,9,10}:-0.0321521014921;VSX1,2:-0.0688052603896;POU3F1..4:-0.0692289715655;NHLH1,2:-0.111339985481;NKX2-3_NKX2-5:-0.115855768225;SOX5:-0.131811315611;RORA:-0.133717329626;FOSL2:-0.137635043679;HOXA9_MEIS1:-0.141418152485;NR6A1:-0.147997407407;SOX17:-0.166622676265;MEF2{A,B,C,D}:-0.169821593769;NANOG{mouse}:-0.177108538099;PAX3,7:-0.178915321966;POU6F1:-0.185022858294;LEF1_TCF7_TCF7L1,2:-0.197678861663;E2F1..5:-0.201242206643;RUNX1..3:-0.20984883514;HOX{A4,D4}:-0.211491588921;FOXL1:-0.220757812233;YY1:-0.233647063992;CUX2:-0.240481459527;NFATC1..3:-0.241431763426;NFKB1_REL_RELA:-0.251559594264;DBP:-0.26113811625;NKX3-1:-0.274688922684;OCT4_SOX2{dimer}:-0.281455188193;FOX{I1,J2}:-0.285910118843;RFX1:-0.29448572514;ZNF143:-0.31561315796;SRF:-0.320740826939;FOXD3:-0.332019515103;SNAI1..3:-0.336458847336;BREu{core}:-0.344712927632;STAT2,4,6:-0.350051309701;ONECUT1,2:-0.356652846605;GCM1,2:-0.414433529639;NKX6-1,2:-0.439515175419;ETS1,2:-0.445464003872;T:-0.458331943684;FOXQ1:-0.467872291262;PATZ1:-0.468302013863;HIF1A:-0.47926373097;FOX{F1,F2,J1}:-0.500824360334;XBP1:-0.508177226566;ADNP_IRX_SIX_ZHX:-0.519301003712;AHR_ARNT_ARNT2:-0.537192667361;SMAD1..7,9:-0.546398807724;PAX6:-0.552707414745;MZF1:-0.558216719811;SPIB:-0.55926085652;NKX2-1,4:-0.560591075123;MYFfamily:-0.563894980482;JUN:-0.56782859837;NFIL3:-0.572737531313;FOXA2:-0.579916318855;SPI1:-0.581446985593;MED-1{core}:-0.591540616242;TEF:-0.592167163609;EGR1..3:-0.598575278091;EP300:-0.619572265986;CDC5L:-0.648060179085;FOXP3:-0.65569247439;TGIF1:-0.659752651323;PRDM1:-0.672954425633;ATF2:-0.691496993389;NKX3-2:-0.716036927832;ZEB1:-0.720010593687;TLX2:-0.721445264173;FOXM1:-0.746453567439;MTE{core}:-0.748086744992;NRF1:-0.754344370129;ATF5_CREB3:-0.768331567673;PITX1..3:-0.774042220738;MAFB:-0.794997487178;MAZ:-0.835499528104;RFX2..5_RFXANK_RFXAP:-0.83794627462;CREB1:-0.853001124061;ARID5B:-0.855369603746;PAX8:-0.858419442681;SOX2:-0.865447209803;ZNF384:-0.872618730016;HSF1,2:-0.876650612883;AIRE:-0.883237476071;ELK1,4_GABP{A,B1}:-0.907147324908;DMAP1_NCOR{1,2}_SMARC:-0.935507477807;CDX1,2,4:-0.938450810554;HBP1_HMGB_SSRP1_UBTF:-0.955141179114;IRF1,2:-0.96182520641;PAX2:-0.967557445245;EVI1:-0.978191028188;GATA4:-0.980592981737;ELF1,2,4:-0.997056134082;IRF7:-1.03359271661;FOXO1,3,4:-1.03863064702;FOX{D1,D2}:-1.08300881711;PAX4:-1.08520627123;ZFP161:-1.08850301726;FOXP1:-1.09375508582;ALX1:-1.12111061304;ATF4:-1.26484538545;ZBTB16:-1.29917925632;IKZF2:-1.40279219917;STAT1,3:-1.41728549501;HMGA1,2:-1.45328038227;BPTF:-1.49775930872;PDX1:-1.52996906084;SREBF1,2:-1.70827028175;FOXN1:-2.09708180385;RBPJ:-2.21403206784 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11607-120I5;search_select_hide=table117:FF:11607-120I5 | |||
}} | }} | ||
Latest revision as of 18:11, 4 June 2020
| Name: | Keratocytes, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12095 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12095
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12095
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.315 |
| 10 | 10 | 0.919 |
| 100 | 100 | 0.4 |
| 101 | 101 | 0.768 |
| 102 | 102 | 0.856 |
| 103 | 103 | 0.157 |
| 104 | 104 | 0.187 |
| 105 | 105 | 0.0639 |
| 106 | 106 | 0.114 |
| 107 | 107 | 0.0804 |
| 108 | 108 | 0.389 |
| 109 | 109 | 0.0282 |
| 11 | 11 | 0.0127 |
| 110 | 110 | 0.0796 |
| 111 | 111 | 0.555 |
| 112 | 112 | 0.35 |
| 113 | 113 | 0.297 |
| 114 | 114 | 0.507 |
| 115 | 115 | 0.805 |
| 116 | 116 | 0.133 |
| 117 | 117 | 0.416 |
| 118 | 118 | 0.647 |
| 119 | 119 | 0.355 |
| 12 | 12 | 0.43 |
| 120 | 120 | 0.171 |
| 121 | 121 | 0.594 |
| 122 | 122 | 0.815 |
| 123 | 123 | 0.812 |
| 124 | 124 | 0.593 |
| 125 | 125 | 0.706 |
| 126 | 126 | 0.666 |
| 127 | 127 | 0.218 |
| 128 | 128 | 0.0495 |
| 129 | 129 | 0.373 |
| 13 | 13 | 0.357 |
| 130 | 130 | 0.319 |
| 131 | 131 | 0.819 |
| 132 | 132 | 0.126 |
| 133 | 133 | 0.457 |
| 134 | 134 | 0.27 |
| 135 | 135 | 0.748 |
| 136 | 136 | 0.999 |
| 137 | 137 | 0.172 |
| 138 | 138 | 0.699 |
| 139 | 139 | 0.413 |
| 14 | 14 | 0.934 |
| 140 | 140 | 0.267 |
| 141 | 141 | 0.55 |
| 142 | 142 | 0.0889 |
| 143 | 143 | 0.0303 |
| 144 | 144 | 0.571 |
| 145 | 145 | 0.136 |
| 146 | 146 | 0.156 |
| 147 | 147 | 0.235 |
| 148 | 148 | 0.128 |
| 149 | 149 | 0.0477 |
| 15 | 15 | 0.371 |
| 150 | 150 | 0.421 |
| 151 | 151 | 0.396 |
| 152 | 152 | 0.145 |
| 153 | 153 | 0.914 |
| 154 | 154 | 0.457 |
| 155 | 155 | 0.5 |
| 156 | 156 | 0.11 |
| 157 | 157 | 0.0836 |
| 158 | 158 | 0.343 |
| 159 | 159 | 0.829 |
| 16 | 16 | 0.257 |
| 160 | 160 | 0.0441 |
| 161 | 161 | 0.159 |
| 162 | 162 | 0.141 |
| 163 | 163 | 0.666 |
| 164 | 164 | 0.494 |
| 165 | 165 | 0.327 |
| 166 | 166 | 0.728 |
| 167 | 167 | 0.303 |
| 168 | 168 | 0.489 |
| 169 | 169 | 0.039 |
| 17 | 17 | 0.148 |
| 18 | 18 | 0.0684 |
| 19 | 19 | 0.105 |
| 2 | 2 | 0.217 |
| 20 | 20 | 0.604 |
| 21 | 21 | 0.738 |
| 22 | 22 | 0.0791 |
| 23 | 23 | 0.116 |
| 24 | 24 | 0.381 |
| 25 | 25 | 0.749 |
| 26 | 26 | 0.0571 |
| 27 | 27 | 0.124 |
| 28 | 28 | 0.315 |
| 29 | 29 | 0.644 |
| 3 | 3 | 0.304 |
| 30 | 30 | 0.22 |
| 31 | 31 | 0.396 |
| 32 | 32 | 5.81595e-4 |
| 33 | 33 | 0.888 |
| 34 | 34 | 0.222 |
| 35 | 35 | 0.84 |
| 36 | 36 | 0.571 |
| 37 | 37 | 0.208 |
| 38 | 38 | 0.221 |
| 39 | 39 | 0.607 |
| 4 | 4 | 0.249 |
| 40 | 40 | 0.0472 |
| 41 | 41 | 0.713 |
| 42 | 42 | 0.563 |
| 43 | 43 | 0.135 |
| 44 | 44 | 0.713 |
| 45 | 45 | 0.351 |
| 46 | 46 | 0.0877 |
| 47 | 47 | 0.175 |
| 48 | 48 | 0.105 |
| 49 | 49 | 0.121 |
| 5 | 5 | 0.479 |
| 50 | 50 | 0.501 |
| 51 | 51 | 0.201 |
| 52 | 52 | 0.565 |
| 53 | 53 | 0.908 |
| 54 | 54 | 0.259 |
| 55 | 55 | 0.521 |
| 56 | 56 | 0.226 |
| 57 | 57 | 0.3 |
| 58 | 58 | 0.819 |
| 59 | 59 | 0.0397 |
| 6 | 6 | 0.948 |
| 60 | 60 | 0.265 |
| 61 | 61 | 0.485 |
| 62 | 62 | 0.745 |
| 63 | 63 | 0.13 |
| 64 | 64 | 0.0525 |
| 65 | 65 | 0.0176 |
| 66 | 66 | 0.308 |
| 67 | 67 | 0.841 |
| 68 | 68 | 0.0383 |
| 69 | 69 | 0.0382 |
| 7 | 7 | 0.546 |
| 70 | 70 | 0.0254 |
| 71 | 71 | 0.177 |
| 72 | 72 | 0.973 |
| 73 | 73 | 0.0563 |
| 74 | 74 | 0.689 |
| 75 | 75 | 0.674 |
| 76 | 76 | 0.7 |
| 77 | 77 | 0.0241 |
| 78 | 78 | 0.748 |
| 79 | 79 | 0.159 |
| 8 | 8 | 0.0185 |
| 80 | 80 | 0.827 |
| 81 | 81 | 0.302 |
| 82 | 82 | 0.376 |
| 83 | 83 | 0.695 |
| 84 | 84 | 0.467 |
| 85 | 85 | 0.0903 |
| 86 | 86 | 0.874 |
| 87 | 87 | 0.176 |
| 88 | 88 | 0.305 |
| 89 | 89 | 0.0322 |
| 9 | 9 | 0.161 |
| 90 | 90 | 0.807 |
| 91 | 91 | 0.26 |
| 92 | 92 | 0.303 |
| 93 | 93 | 0.135 |
| 94 | 94 | 0.12 |
| 95 | 95 | 0.0988 |
| 96 | 96 | 0.178 |
| 97 | 97 | 0.866 |
| 98 | 98 | 0.146 |
| 99 | 99 | 0.0103 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12095
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000084 human keratocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002363 (keratocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0000020 (sense organ)
0003566 (head connective tissue)
0003891 (stroma)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000964 (cornea)
0001777 (substantia propria of cornea)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0010409 (eye surface)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000084 (human keratocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)
CL:0000008 (migratory cranial neural crest cell)
