FF:10854-111F8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005101 | |||
|accession_numbers=CAGE;DRX007943;DRR008815;DRZ000240;DRZ001625;DRZ011590;DRZ012975 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0102424 | |fonse_cell_line=FF:0102424 | ||
|fonse_cell_line_closure=FF:0102424 | |fonse_cell_line_closure=FF:0102424 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-83.CNhs13070.10854-111F8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10854-111F8 | |id=FF:10854-111F8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |||
|library_id=CNhs13070 | |||
|library_id_phase_based=2:CNhs13070 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10854 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10854 | |||
|name=mesothelioma cell line:Mero-83 | |name=mesothelioma cell line:Mero-83 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13070,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13070,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.035773264607702,0,0.035773264607702,0,0,0.117392974903815,0,-0.0906129624557986,0.259052072849274,0,0,0,0,0,0,0,0,0,0,0,0.23460721171067,0,0.0334261593892878,0,0,0,0,0,0.218962461090944,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66103393088235,0,-0.0526222328649439,0.0751786502063455,0,0,0,0,0,0,0,0.108741568666028,0,0,0,0,0,0.00843947568975265,0,0.289098109209312,0,0,-0.0257970979976929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0731110434542847,0.035773264607702,0,0,-0.0438424118690426,0.0736667497903388,0,0.071546529215404,0,0.186749169737715,-0.0264888220223024,0.24415753838576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.060600329314759,0.23460721171067,0,0,-0.0634716325850211,-0.177469588903801,0,0,0.071546529215404,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0264888220223024,0,0.186749169737715,0,0,0,0,0.071546529215404,0,0.071546529215404,0,0,0.0697414820734372,0,0.186947712130342,0.0432340272142436,0.035773264607702,0,-0.0799536614166786,0,0,0,0,0.071546529215404,0,0.071546529215404,0,0,0.00483672282629757,0,-0.0504125515893149,0,0,0.0419420478135019,0,0,-0.305472230898407,0,0.172603413429443,0.317746209374549,0,0.071546529215404,0,0,0.245042820219436,0,-0.0493329545783366,0.104029001414298,-0.0886549983239445,-0.350190616185493,0.0158340324342221,0,0,0,-0.500481481915886,0.0311516865279677,0,0,-0.121779851751874,-0.145576353952957,0,0,-0.319498052336231,0,0.0887603751031021,-0.0406020813289295,0,0.23355325071571,0,0,0,0,0,0,0,0,0.071546529215404,0,0,-0.0574934668214365,0.089951249316614,0.118108522714914,0.071546529215404,0.277711004990201,0,0.00739588994183438,0,0,0.287747774925783,-0.0730250083066578,0.0252532910453734,0.0242133349396838,0,-0.302389727009913,0.0553041719656885,-0.474129031047268,0.135295695292581,0.0872053623395318,0.126938637809154,0,0.105268512952102,0.179309404213568,0.035773264607702,0.124638823197269,0.0928385216049566,-0.391934750098725,0.121270984713437,0,0,0,-0.0410209976939233,0,0.00273911005472072,-0.173194357117772,0.0153872265151353,-0.268826884070919,0.106648712195371,0.0585735955381375,0.183108450383079,0.172681262122161,0.220249474268667,0,0.210807826504389,-0.0151222122287322,0,0,-0.055619939662315,0.270503040560232,-0.0936226375789786,0.071546529215404,-0.483977461810981,0.248576096281633,0.0693906549541906,0.0970148881188795,0.110940175260218,0,0,0.0084196222606937,0,0,0.174754409049936,0,0,0.00856368092264015,-0.261781138039965,0.212886910713746,0,0.0136547384762337,0.031019103849259,0.0332308850885885,0,-0.182910742515776,0.071546529215404,0,-0.014922799606035,0,0.0421622954903121,-0.250919396678822,-0.106626072362248,0.0757869703652736,0.0130997024035788,-0.23229015801872,-0.210198875993315,-0.0438424118690426,-0.266736329190526,0.129140936577391,-0.0165803032598837,0.0125809915371056,0.409270214309855,0.286083901706056,0,-0.0622186348707512,0,0.0499364441253929,0,-0.189271177100471,0,-0.493875660214953,0.0852489412488178,-0.367742845365282,0.0959242739344845,0,0.0274032388371687,-0.471210580414972,0.071546529215404,0.0563759185752489,0,0,-0.150367083334639,-0.199514190755572,-0.211650427864589,0.112845306869164,0,-0.129046227507307,0,0,0.350323808755958,0.0422349672258122,0,-0.0573423154928047,0.0164797785086617,-0.0376215223380777,-0.115971073434934,0.277711004990201,0,-0.645700337992725,0,0.071546529215404,0.392088859045912,-0.00788591654635762,0.132749869320984,-0.253326341486756,0.071546529215404,-0.108622809454255,0,0,0.0092214037725398,0,0.349590111626627,0,0,0.169680649880527,0.236252938952126,0,0,0,-0.0368055118782634,0,0,0,0,0,0,0,0.00267551991268244,0.143348445540563,0,0.237075698927251,0,0.071546529215404,0,0,0,0,0,0.277711004990201,0.665310028262359,0.0628777137060194,0.349735707238866,0,0,0,0,0.0188838091571957,-0.0164873923570083,0,0.145848298492569,0,0,0.071546529215404,0,-0.0861409897892114,0,0,0,0.066478294889431,-0.057730457053664,-0.0221668951900968,0,0,0,0.416768547556116,0,0,1.27666590007862,0,-0.0838731559506072,0,0.079265480027998,0.207543584801999,0,0.167249259738077,-0.0815818795468414,0,-0.118453876584425,-0.201865874779098,0.771194601453018,0,0,0.0163638732003134,0,0.112011049180923,-0.0875358060467638,0.0200780397265642,0.071546529215404,0,0,0,0,0,0,0,-0.214314512399756,0.17777637002483,0,0,0,0,0.132956589778862,0,0,0,0,0.132956589778862,-0.170431743473192,0.18548694833169,0.0158945016114356,0,0,0,0,0,0,-0.0241060230789031,0.0363847729717457,0.035773264607702,0,0,0,0,0,0,0,0.294644595317943,0,0,0,0,0,0.289098109209312,0,0,0,0.071546529215404,0.518104145698547,0,0,-0.0906129624557986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00963750374341453,-0.232212527368008,0,0,0,0,0,0,0,0.0420870591529112,0,0,0,0,0.163826631281224,0.071546529215404,0,0,0.340946087480135,0,0.117392974903815,0,0,0,0,0,0.0907897623641286,0.035773264607702,0,0,0,0,0,0,0,0,0,0,0.035773264607702,0,0,0,0.167538487672955,0.0393982084803652,-0.0086085338689591,0,0,0,-0.115324746777707,0,0,0,0,0,0,0.107515078466574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23460721171067,0,0,0,0,0,0.035773264607702,0.000915220802613645,0,0,0,0,0,0,0,0.218962461090944,0,0,-0.0920328098005262,0,0,0,0,0,0,0.124840246772063,0.355350784153883,0.0124537018899238,0,0,0,-0.054385572482455,0,0,0.0325355914811945,0,0.0661792023599609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0334261593892878,0,0,0,0,0,0,0,0,0,0,0,0,0.035773264607702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.071546529215404,0.035773264607702,0,0,0,0,0,0,0.059363221593441,0.071546529215404,0,0,0,0,0,0,0.132956589778862,0,0,0,0,0,0,0,0,0.035773264607702,0,0,0,0,0.071546529215404,0.236901889090363,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.132956589778862,0,0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0.071546529215404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0525478150081361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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=97 | |rna_weight_ug=97 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9100106 | |sample_cell_catalog=9100106 | ||
|sample_cell_line=Mero-83 | |sample_cell_line=Mero-83 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.22919412680655e-256!GO:0043226;organelle;5.39766914678715e-211!GO:0043229;intracellular organelle;2.0832095705458e-210!GO:0043227;membrane-bound organelle;6.54381378939188e-208!GO:0043231;intracellular membrane-bound organelle;6.54381378939188e-208!GO:0005737;cytoplasm;2.15672851707419e-183!GO:0044422;organelle part;3.18506078530397e-152!GO:0044446;intracellular organelle part;2.70891319730896e-150!GO:0044444;cytoplasmic part;1.99826429458201e-129!GO:0032991;macromolecular complex;1.47562133380148e-105!GO:0044237;cellular metabolic process;1.78966326673182e-92!GO:0044238;primary metabolic process;4.28631738303767e-92!GO:0005634;nucleus;7.04589974373322e-91!GO:0030529;ribonucleoprotein complex;1.3465541078824e-90!GO:0043170;macromolecule metabolic process;6.12475337590471e-90!GO:0005515;protein binding;1.79177545849075e-81!GO:0044428;nuclear part;2.65518754056064e-79!GO:0003723;RNA binding;4.95851131684091e-77!GO:0043233;organelle lumen;1.36975566106126e-76!GO:0031974;membrane-enclosed lumen;1.36975566106126e-76!GO:0005739;mitochondrion;8.20477800110418e-65!GO:0043283;biopolymer metabolic process;1.0321977414193e-55!GO:0005840;ribosome;9.37853669561697e-54!GO:0019538;protein metabolic process;1.6476804565629e-53!GO:0016043;cellular component organization and biogenesis;1.67957622642588e-53!GO:0043234;protein complex;2.33745010472314e-53!GO:0006412;translation;1.0946862715294e-52!GO:0006396;RNA processing;8.81389549763386e-52!GO:0031090;organelle membrane;5.70523626518088e-50!GO:0031981;nuclear lumen;1.59808199018822e-49!GO:0044260;cellular macromolecule metabolic process;1.22316215869617e-48!GO:0044267;cellular protein metabolic process;1.22316215869617e-48!GO:0003735;structural constituent of ribosome;1.02922411196807e-46!GO:0033036;macromolecule localization;8.46238988440281e-46!GO:0010467;gene expression;8.77844272835524e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.07890768876785e-45!GO:0015031;protein transport;3.3464574517044e-43!GO:0044429;mitochondrial part;3.62528363661743e-42!GO:0008104;protein localization;1.33178809005899e-41!GO:0033279;ribosomal subunit;3.55036584462703e-41!GO:0045184;establishment of protein localization;6.7027005783933e-41!GO:0044249;cellular biosynthetic process;1.15239941012808e-40!GO:0031967;organelle envelope;2.30258381032268e-40!GO:0005829;cytosol;5.21491763712182e-40!GO:0031975;envelope;5.63185221027821e-40!GO:0009058;biosynthetic process;1.37001275151397e-39!GO:0009059;macromolecule biosynthetic process;4.61511711617653e-39!GO:0016071;mRNA metabolic process;5.18277701808211e-39!GO:0043228;non-membrane-bound organelle;1.45943093967471e-38!GO:0043232;intracellular non-membrane-bound organelle;1.45943093967471e-38!GO:0046907;intracellular transport;4.43352376992827e-38!GO:0008380;RNA splicing;7.48639918169486e-37!GO:0006996;organelle organization and biogenesis;2.32771122230965e-36!GO:0006397;mRNA processing;4.45314221334012e-35!GO:0006259;DNA metabolic process;3.03471928674718e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.35739669709497e-34!GO:0065003;macromolecular complex assembly;1.45794448762241e-32!GO:0000166;nucleotide binding;1.53742749703576e-31!GO:0006886;intracellular protein transport;1.08020699136112e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.61535199570714e-30!GO:0022607;cellular component assembly;3.11854340218032e-29!GO:0005654;nucleoplasm;5.72663562444186e-29!GO:0003676;nucleic acid binding;1.10504363887118e-28!GO:0007049;cell cycle;6.54807865787295e-28!GO:0005740;mitochondrial envelope;1.28570320778194e-27!GO:0031966;mitochondrial membrane;8.86001213589202e-26!GO:0019866;organelle inner membrane;1.13564550300363e-25!GO:0051641;cellular localization;1.31894956220335e-25!GO:0051649;establishment of cellular localization;3.3616360886257e-25!GO:0005681;spliceosome;4.58359413243686e-25!GO:0044445;cytosolic part;8.51343665918289e-25!GO:0016462;pyrophosphatase activity;3.15251380292595e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.33630789945335e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;4.12005313762972e-24!GO:0017111;nucleoside-triphosphatase activity;6.81819457037422e-24!GO:0005743;mitochondrial inner membrane;1.27534880174945e-23!GO:0012505;endomembrane system;1.18817581326171e-22!GO:0044451;nucleoplasm part;1.51950099904332e-22!GO:0032553;ribonucleotide binding;1.80979390957072e-22!GO:0032555;purine ribonucleotide binding;1.80979390957072e-22!GO:0006119;oxidative phosphorylation;5.53687518037855e-22!GO:0017076;purine nucleotide binding;7.62627539872099e-22!GO:0005730;nucleolus;1.48280400605148e-21!GO:0016874;ligase activity;1.60421324524928e-21!GO:0015935;small ribosomal subunit;3.28999825197805e-21!GO:0015934;large ribosomal subunit;4.45313138242287e-21!GO:0022402;cell cycle process;4.99747043928178e-21!GO:0005783;endoplasmic reticulum;2.73769884889888e-20!GO:0016070;RNA metabolic process;3.27780743329368e-20!GO:0006974;response to DNA damage stimulus;3.87817719615281e-20!GO:0000278;mitotic cell cycle;6.21415696999342e-20!GO:0005524;ATP binding;6.38541291535713e-20!GO:0044455;mitochondrial membrane part;1.35130625044826e-19!GO:0006457;protein folding;1.55062728236541e-19!GO:0032559;adenyl ribonucleotide binding;2.59661906014433e-19!GO:0022618;protein-RNA complex assembly;5.82959454459039e-19!GO:0006512;ubiquitin cycle;1.21795925400894e-18!GO:0030554;adenyl nucleotide binding;1.68159254392537e-18!GO:0031980;mitochondrial lumen;1.42514305565739e-17!GO:0005759;mitochondrial matrix;1.42514305565739e-17!GO:0006281;DNA repair;2.22427843254996e-17!GO:0043412;biopolymer modification;4.87086008264125e-17!GO:0000502;proteasome complex (sensu Eukaryota);6.90310820865891e-17!GO:0044432;endoplasmic reticulum part;7.66189604617448e-17!GO:0044265;cellular macromolecule catabolic process;9.42583074750828e-17!GO:0005694;chromosome;1.06308634846961e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.88884061755829e-16!GO:0019941;modification-dependent protein catabolic process;3.36656432576728e-16!GO:0043632;modification-dependent macromolecule catabolic process;3.36656432576728e-16!GO:0043285;biopolymer catabolic process;3.50545436777666e-16!GO:0044257;cellular protein catabolic process;3.89685653568519e-16!GO:0006511;ubiquitin-dependent protein catabolic process;7.01460996542017e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.28031284975877e-16!GO:0008135;translation factor activity, nucleic acid binding;8.0662053802481e-16!GO:0042254;ribosome biogenesis and assembly;8.13335841707224e-16!GO:0005746;mitochondrial respiratory chain;8.61035566785945e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.070533641338e-15!GO:0051301;cell division;1.09914058756793e-15!GO:0008134;transcription factor binding;1.17439442073766e-15!GO:0006464;protein modification process;2.43746039324834e-15!GO:0048193;Golgi vesicle transport;3.61852023071629e-15!GO:0005794;Golgi apparatus;3.69063162581214e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.63993162201749e-15!GO:0044427;chromosomal part;6.23232325549421e-15!GO:0048770;pigment granule;6.8360030976731e-15!GO:0042470;melanosome;6.8360030976731e-15!GO:0007067;mitosis;7.61426948063e-15!GO:0000087;M phase of mitotic cell cycle;7.69236376914222e-15!GO:0006605;protein targeting;8.53536730516005e-15!GO:0016887;ATPase activity;1.02451763679183e-14!GO:0009719;response to endogenous stimulus;1.04357468152189e-14!GO:0022403;cell cycle phase;1.38771481057695e-14!GO:0005761;mitochondrial ribosome;1.56621539752503e-14!GO:0000313;organellar ribosome;1.56621539752503e-14!GO:0042623;ATPase activity, coupled;1.88425782009301e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.99683907431837e-14!GO:0003954;NADH dehydrogenase activity;1.99683907431837e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.99683907431837e-14!GO:0009057;macromolecule catabolic process;2.72839001213955e-14!GO:0006260;DNA replication;3.00606366158313e-14!GO:0051276;chromosome organization and biogenesis;3.52930560453788e-14!GO:0044453;nuclear membrane part;8.06292937919472e-14!GO:0051082;unfolded protein binding;1.03865498231418e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.31262460507699e-13!GO:0000375;RNA splicing, via transesterification reactions;1.31262460507699e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.31262460507699e-13!GO:0030163;protein catabolic process;2.06511549236337e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.3014469324194e-13!GO:0031965;nuclear membrane;2.46133560629322e-13!GO:0005635;nuclear envelope;2.59549229525118e-13!GO:0043687;post-translational protein modification;4.42600544599305e-13!GO:0051186;cofactor metabolic process;5.20203672415947e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.26803644632055e-13!GO:0042773;ATP synthesis coupled electron transport;5.26803644632055e-13!GO:0016192;vesicle-mediated transport;5.26803644632055e-13!GO:0003743;translation initiation factor activity;7.57287591961661e-13!GO:0005789;endoplasmic reticulum membrane;8.09861719245176e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.23293316329975e-12!GO:0045271;respiratory chain complex I;1.23293316329975e-12!GO:0005747;mitochondrial respiratory chain complex I;1.23293316329975e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.43906326440741e-12!GO:0044248;cellular catabolic process;1.9027656379053e-12!GO:0004386;helicase activity;2.14947716410593e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.40342245520009e-12!GO:0006413;translational initiation;5.96450468478611e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;1.15673657682167e-11!GO:0016604;nuclear body;1.19963025989028e-11!GO:0008026;ATP-dependent helicase activity;1.5357830186295e-11!GO:0000279;M phase;1.55151890113269e-11!GO:0008639;small protein conjugating enzyme activity;1.69049355894179e-11!GO:0005643;nuclear pore;2.51280859242087e-11!GO:0006913;nucleocytoplasmic transport;2.63949395618786e-11!GO:0006399;tRNA metabolic process;2.72529580339414e-11!GO:0006323;DNA packaging;4.1617599655592e-11!GO:0004842;ubiquitin-protein ligase activity;4.24935419521599e-11!GO:0051726;regulation of cell cycle;5.95358344837635e-11!GO:0051169;nuclear transport;7.35469989431849e-11!GO:0006364;rRNA processing;8.32154339143235e-11!GO:0000074;regulation of progression through cell cycle;8.64384617061135e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.70266590195509e-11!GO:0019787;small conjugating protein ligase activity;1.06170825262742e-10!GO:0016072;rRNA metabolic process;1.41574980323725e-10!GO:0012501;programmed cell death;2.04910639129896e-10!GO:0003712;transcription cofactor activity;2.0684451277454e-10!GO:0006915;apoptosis;3.31464647721925e-10!GO:0009259;ribonucleotide metabolic process;3.33134396307228e-10!GO:0008565;protein transporter activity;3.57357975460725e-10!GO:0065002;intracellular protein transport across a membrane;4.05798347931511e-10!GO:0006446;regulation of translational initiation;4.12978253883264e-10!GO:0050657;nucleic acid transport;4.6386110998498e-10!GO:0051236;establishment of RNA localization;4.6386110998498e-10!GO:0050658;RNA transport;4.6386110998498e-10!GO:0006403;RNA localization;4.75867103556306e-10!GO:0006366;transcription from RNA polymerase II promoter;5.15421353520895e-10!GO:0009055;electron carrier activity;6.10498606408639e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.43374508173685e-10!GO:0006163;purine nucleotide metabolic process;9.32736758804496e-10!GO:0005793;ER-Golgi intermediate compartment;9.78677271578669e-10!GO:0016607;nuclear speck;1.11238372521554e-09!GO:0046930;pore complex;1.28387681592475e-09!GO:0016881;acid-amino acid ligase activity;1.52961447036995e-09!GO:0006732;coenzyme metabolic process;1.81700331611189e-09!GO:0009260;ribonucleotide biosynthetic process;3.13143735873274e-09!GO:0008219;cell death;3.23762722116482e-09!GO:0016265;death;3.23762722116482e-09!GO:0015630;microtubule cytoskeleton;3.30459431342892e-09!GO:0065004;protein-DNA complex assembly;3.62330158542906e-09!GO:0006164;purine nucleotide biosynthetic process;3.72504167785232e-09!GO:0009150;purine ribonucleotide metabolic process;4.46294840783862e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.87151131089792e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.87151131089792e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.87151131089792e-09!GO:0050794;regulation of cellular process;5.95183249299253e-09!GO:0006461;protein complex assembly;6.37207798186716e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.84472028526842e-09!GO:0000785;chromatin;7.86655922653776e-09!GO:0043038;amino acid activation;8.08018824920851e-09!GO:0006418;tRNA aminoacylation for protein translation;8.08018824920851e-09!GO:0043039;tRNA aminoacylation;8.08018824920851e-09!GO:0048523;negative regulation of cellular process;9.0692746769878e-09!GO:0043566;structure-specific DNA binding;1.14698083431828e-08!GO:0003697;single-stranded DNA binding;1.38124507280769e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.42714789403311e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.77351149520166e-08!GO:0006333;chromatin assembly or disassembly;1.82368301974824e-08!GO:0009141;nucleoside triphosphate metabolic process;1.87138176501888e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.28052404364683e-08!GO:0015986;ATP synthesis coupled proton transport;2.67356186189473e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.67356186189473e-08!GO:0009060;aerobic respiration;2.89658810893399e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.89658810893399e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.89658810893399e-08!GO:0051028;mRNA transport;3.57959036492808e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.00826919385687e-08!GO:0046034;ATP metabolic process;7.03494117303688e-08!GO:0017038;protein import;7.17926264875055e-08!GO:0015078;hydrogen ion transmembrane transporter activity;7.76547969291081e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.08249632363789e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.08249632363789e-08!GO:0007005;mitochondrion organization and biogenesis;1.005088233273e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.21459620071329e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.39686607068103e-07!GO:0016568;chromatin modification;1.40294023058023e-07!GO:0048475;coated membrane;1.62498080597022e-07!GO:0030117;membrane coat;1.62498080597022e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.84176062367404e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.84176062367404e-07!GO:0019829;cation-transporting ATPase activity;1.92985353881331e-07!GO:0051188;cofactor biosynthetic process;2.05957891850254e-07!GO:0048519;negative regulation of biological process;2.32262078342273e-07!GO:0030120;vesicle coat;2.39263308373987e-07!GO:0030662;coated vesicle membrane;2.39263308373987e-07!GO:0043623;cellular protein complex assembly;2.96105022292938e-07!GO:0045333;cellular respiration;3.26719208213645e-07!GO:0006754;ATP biosynthetic process;3.66446691054761e-07!GO:0006753;nucleoside phosphate metabolic process;3.66446691054761e-07!GO:0051246;regulation of protein metabolic process;4.1536112923705e-07!GO:0003924;GTPase activity;4.56627115731643e-07!GO:0043067;regulation of programmed cell death;4.87312447873599e-07!GO:0042981;regulation of apoptosis;5.45156761848595e-07!GO:0016779;nucleotidyltransferase activity;5.45156761848595e-07!GO:0016740;transferase activity;6.12052937618355e-07!GO:0005667;transcription factor complex;6.77874495851852e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.99599467083015e-07!GO:0030532;small nuclear ribonucleoprotein complex;7.51161971892159e-07!GO:0045259;proton-transporting ATP synthase complex;8.24213236437126e-07!GO:0044431;Golgi apparatus part;8.88843968107497e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.03754163668098e-07!GO:0009056;catabolic process;1.21700285797899e-06!GO:0009117;nucleotide metabolic process;1.29981185493873e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.32184824995148e-06!GO:0000151;ubiquitin ligase complex;1.42459359890766e-06!GO:0006793;phosphorus metabolic process;1.43695240721776e-06!GO:0006796;phosphate metabolic process;1.43695240721776e-06!GO:0000245;spliceosome assembly;1.48169508787462e-06!GO:0005819;spindle;1.63734453915435e-06!GO:0006099;tricarboxylic acid cycle;1.76338966989899e-06!GO:0046356;acetyl-CoA catabolic process;1.76338966989899e-06!GO:0008654;phospholipid biosynthetic process;2.25102314169457e-06!GO:0032446;protein modification by small protein conjugation;2.40972346362343e-06!GO:0016310;phosphorylation;2.57328620167938e-06!GO:0051427;hormone receptor binding;2.90840011348239e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.04621311299124e-06!GO:0003724;RNA helicase activity;3.64859286740954e-06!GO:0016567;protein ubiquitination;3.70029062240965e-06!GO:0005768;endosome;4.08981267540951e-06!GO:0000775;chromosome, pericentric region;4.17128018149553e-06!GO:0004298;threonine endopeptidase activity;4.37564557475417e-06!GO:0006334;nucleosome assembly;4.54655086747022e-06!GO:0031988;membrane-bound vesicle;4.80655879470468e-06!GO:0006261;DNA-dependent DNA replication;5.04146745498333e-06!GO:0050789;regulation of biological process;5.11959600125662e-06!GO:0006084;acetyl-CoA metabolic process;5.33684719558182e-06!GO:0005813;centrosome;6.13148889257286e-06!GO:0016563;transcription activator activity;6.42199919587757e-06!GO:0016787;hydrolase activity;6.441582723255e-06!GO:0035257;nuclear hormone receptor binding;6.91454978934565e-06!GO:0031497;chromatin assembly;7.00060126852916e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.07766613724781e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.08060190002327e-06!GO:0043069;negative regulation of programmed cell death;7.2922546110101e-06!GO:0006916;anti-apoptosis;7.61744081184596e-06!GO:0016023;cytoplasmic membrane-bound vesicle;8.18243880243424e-06!GO:0005815;microtubule organizing center;8.46870609224265e-06!GO:0005525;GTP binding;8.74591346514863e-06!GO:0031324;negative regulation of cellular metabolic process;8.74591346514863e-06!GO:0009108;coenzyme biosynthetic process;9.13900496661908e-06!GO:0005762;mitochondrial large ribosomal subunit;9.76358903732322e-06!GO:0000315;organellar large ribosomal subunit;9.76358903732322e-06!GO:0006613;cotranslational protein targeting to membrane;1.1601656434092e-05!GO:0051170;nuclear import;1.19826410635054e-05!GO:0043066;negative regulation of apoptosis;1.21803503300062e-05!GO:0051325;interphase;1.25257365460171e-05!GO:0006752;group transfer coenzyme metabolic process;1.33406599180654e-05!GO:0045786;negative regulation of progression through cell cycle;1.35567697122862e-05!GO:0007051;spindle organization and biogenesis;1.41236626062485e-05!GO:0003713;transcription coactivator activity;1.55732600846823e-05!GO:0006606;protein import into nucleus;1.73601723023416e-05!GO:0051329;interphase of mitotic cell cycle;1.79728345118998e-05!GO:0005788;endoplasmic reticulum lumen;1.88026641888731e-05!GO:0051187;cofactor catabolic process;2.01470989209198e-05!GO:0019222;regulation of metabolic process;2.24665965654914e-05!GO:0005798;Golgi-associated vesicle;2.28076505486785e-05!GO:0009109;coenzyme catabolic process;2.41533718534639e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.52244421486196e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.68457699581756e-05!GO:0016491;oxidoreductase activity;2.80167710482745e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.61804483848125e-05!GO:0016564;transcription repressor activity;3.96479017112147e-05!GO:0016363;nuclear matrix;4.13329367037179e-05!GO:0043021;ribonucleoprotein binding;4.36543191315257e-05!GO:0051168;nuclear export;4.41577378270251e-05!GO:0031982;vesicle;4.44203470297963e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.25840361505571e-05!GO:0003682;chromatin binding;6.46486440353432e-05!GO:0000139;Golgi membrane;6.66803282513511e-05!GO:0005048;signal sequence binding;6.84406991967742e-05!GO:0003899;DNA-directed RNA polymerase activity;6.91938174438856e-05!GO:0044452;nucleolar part;7.91643695857313e-05!GO:0032561;guanyl ribonucleotide binding;7.96570245051125e-05!GO:0019001;guanyl nucleotide binding;7.96570245051125e-05!GO:0031410;cytoplasmic vesicle;7.98137447639867e-05!GO:0007010;cytoskeleton organization and biogenesis;8.17890854248994e-05!GO:0030867;rough endoplasmic reticulum membrane;8.63973854359223e-05!GO:0003714;transcription corepressor activity;9.2759487996488e-05!GO:0006414;translational elongation;0.000100292353018531!GO:0003684;damaged DNA binding;0.000112004003543538!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00011788582392037!GO:0031252;leading edge;0.000121546624364391!GO:0016853;isomerase activity;0.00012286985526272!GO:0008094;DNA-dependent ATPase activity;0.000123834463296386!GO:0019843;rRNA binding;0.000124188050179568!GO:0008186;RNA-dependent ATPase activity;0.000125383922510931!GO:0009892;negative regulation of metabolic process;0.000134204211142797!GO:0046474;glycerophospholipid biosynthetic process;0.000142557601509666!GO:0005769;early endosome;0.000152243412031993!GO:0000314;organellar small ribosomal subunit;0.00016650551169058!GO:0005763;mitochondrial small ribosomal subunit;0.00016650551169058!GO:0045454;cell redox homeostasis;0.00018177008266592!GO:0016481;negative regulation of transcription;0.00018418464211435!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00018535286538108!GO:0015399;primary active transmembrane transporter activity;0.00018535286538108!GO:0033116;ER-Golgi intermediate compartment membrane;0.000199194555999424!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000212190799086667!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000214219525756811!GO:0003729;mRNA binding;0.00021948628834114!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00021948628834114!GO:0005905;coated pit;0.00021948628834114!GO:0016859;cis-trans isomerase activity;0.000224230098403312!GO:0003690;double-stranded DNA binding;0.000224856648662219!GO:0006626;protein targeting to mitochondrion;0.000265353447681974!GO:0046489;phosphoinositide biosynthetic process;0.000265512475769183!GO:0015980;energy derivation by oxidation of organic compounds;0.000314771650555652!GO:0006612;protein targeting to membrane;0.000324512372738554!GO:0005885;Arp2/3 protein complex;0.000337807079916943!GO:0046467;membrane lipid biosynthetic process;0.000344365614629594!GO:0004004;ATP-dependent RNA helicase activity;0.00035735729793823!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000378353784771825!GO:0000075;cell cycle checkpoint;0.000405530450927745!GO:0005874;microtubule;0.000416407386381148!GO:0005657;replication fork;0.000419802188296869!GO:0009165;nucleotide biosynthetic process;0.000451630198682652!GO:0019899;enzyme binding;0.000514809463075606!GO:0005791;rough endoplasmic reticulum;0.000514809463075606!GO:0000776;kinetochore;0.000554334685397847!GO:0051789;response to protein stimulus;0.000557953114716475!GO:0006986;response to unfolded protein;0.000557953114716475!GO:0000059;protein import into nucleus, docking;0.000557953114716475!GO:0048471;perinuclear region of cytoplasm;0.000613375187495295!GO:0006383;transcription from RNA polymerase III promoter;0.000616008969855934!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000674816037009727!GO:0008250;oligosaccharyl transferase complex;0.000678331986894584!GO:0042802;identical protein binding;0.000699961473779511!GO:0008361;regulation of cell size;0.000706165808983015!GO:0004674;protein serine/threonine kinase activity;0.000708078615986621!GO:0044440;endosomal part;0.000708428223612778!GO:0010008;endosome membrane;0.000708428223612778!GO:0016197;endosome transport;0.000716210814373908!GO:0008033;tRNA processing;0.000726687957374638!GO:0004576;oligosaccharyl transferase activity;0.00078364475378205!GO:0003678;DNA helicase activity;0.000857703959986063!GO:0005770;late endosome;0.000861641289693108!GO:0048522;positive regulation of cellular process;0.000883036337928111!GO:0051252;regulation of RNA metabolic process;0.000886416366792549!GO:0006091;generation of precursor metabolites and energy;0.000910953140441088!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000913392394700529!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000913392394700529!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000913392394700529!GO:0031968;organelle outer membrane;0.000928580608938111!GO:0016049;cell growth;0.000938697178525967!GO:0006891;intra-Golgi vesicle-mediated transport;0.000957732503221703!GO:0006497;protein amino acid lipidation;0.000957732503221703!GO:0006401;RNA catabolic process;0.000964486440567024!GO:0006352;transcription initiation;0.00100989066132284!GO:0051052;regulation of DNA metabolic process;0.00113725007486341!GO:0001558;regulation of cell growth;0.00115345802864343!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00118522291064143!GO:0006302;double-strand break repair;0.00120963519913106!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00120963519913106!GO:0019867;outer membrane;0.00124474235779135!GO:0006402;mRNA catabolic process;0.00125485730265681!GO:0031323;regulation of cellular metabolic process;0.00132586273773675!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00133047033911328!GO:0005773;vacuole;0.00133979251057444!GO:0006839;mitochondrial transport;0.00136420003483486!GO:0006310;DNA recombination;0.00136445990326048!GO:0008022;protein C-terminus binding;0.00152987569099648!GO:0018196;peptidyl-asparagine modification;0.00155825626777289!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00155825626777289!GO:0043284;biopolymer biosynthetic process;0.00163108050033271!GO:0043681;protein import into mitochondrion;0.00163652592064607!GO:0051920;peroxiredoxin activity;0.00167221016291447!GO:0007243;protein kinase cascade;0.00172888314633471!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00176569056343644!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00176569056343644!GO:0006650;glycerophospholipid metabolic process;0.0017938915815535!GO:0030521;androgen receptor signaling pathway;0.00193516869719405!GO:0008139;nuclear localization sequence binding;0.00205392479990084!GO:0035258;steroid hormone receptor binding;0.00205875355643435!GO:0043492;ATPase activity, coupled to movement of substances;0.00210159232702781!GO:0048500;signal recognition particle;0.0021211251761032!GO:0042158;lipoprotein biosynthetic process;0.00215157313839326!GO:0007006;mitochondrial membrane organization and biogenesis;0.00218576818321413!GO:0030036;actin cytoskeleton organization and biogenesis;0.00227283399973786!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00227513410026494!GO:0006289;nucleotide-excision repair;0.00228975088336136!GO:0006818;hydrogen transport;0.00248956783097268!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00250483988844456!GO:0030663;COPI coated vesicle membrane;0.00253025500490056!GO:0030126;COPI vesicle coat;0.00253025500490056!GO:0015992;proton transport;0.00260938658668865!GO:0030132;clathrin coat of coated pit;0.00266317899134242!GO:0000323;lytic vacuole;0.00266826415666219!GO:0005764;lysosome;0.00266826415666219!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00273798977601665!GO:0030134;ER to Golgi transport vesicle;0.00277874732920381!GO:0006509;membrane protein ectodomain proteolysis;0.00279701123179123!GO:0033619;membrane protein proteolysis;0.00279701123179123!GO:0006506;GPI anchor biosynthetic process;0.00279701123179123!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00281273378876129!GO:0030658;transport vesicle membrane;0.0029208444174409!GO:0007052;mitotic spindle organization and biogenesis;0.0029445435002622!GO:0030118;clathrin coat;0.00299835468315904!GO:0006405;RNA export from nucleus;0.00299835468315904!GO:0030384;phosphoinositide metabolic process;0.00305577770195177!GO:0015631;tubulin binding;0.00323878042467447!GO:0000786;nucleosome;0.00324922558496802!GO:0030880;RNA polymerase complex;0.00324922558496802!GO:0007017;microtubule-based process;0.00326310823876952!GO:0007059;chromosome segregation;0.00330731638353192!GO:0051540;metal cluster binding;0.00332152491428021!GO:0051536;iron-sulfur cluster binding;0.00332152491428021!GO:0000082;G1/S transition of mitotic cell cycle;0.00338491957338181!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00357150311282191!GO:0045045;secretory pathway;0.00367050295093962!GO:0006284;base-excision repair;0.0040004228471392!GO:0006505;GPI anchor metabolic process;0.00408044657215319!GO:0016044;membrane organization and biogenesis;0.00415283568718216!GO:0005741;mitochondrial outer membrane;0.00418691661651401!GO:0030137;COPI-coated vesicle;0.00425777598476419!GO:0030176;integral to endoplasmic reticulum membrane;0.00454423740571714!GO:0048487;beta-tubulin binding;0.00454600259904582!GO:0051087;chaperone binding;0.00459227691806457!GO:0030659;cytoplasmic vesicle membrane;0.00465483915703783!GO:0046966;thyroid hormone receptor binding;0.00471911208669592!GO:0005637;nuclear inner membrane;0.00473257395150998!GO:0030133;transport vesicle;0.00481640189259162!GO:0006595;polyamine metabolic process;0.00495425083397685!GO:0043624;cellular protein complex disassembly;0.00509339502336141!GO:0051539;4 iron, 4 sulfur cluster binding;0.00520993141068837!GO:0030127;COPII vesicle coat;0.00522293500376726!GO:0012507;ER to Golgi transport vesicle membrane;0.00522293500376726!GO:0065007;biological regulation;0.00526415873666438!GO:0008312;7S RNA binding;0.00548030906657324!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00548030906657324!GO:0045047;protein targeting to ER;0.00548030906657324!GO:0030660;Golgi-associated vesicle membrane;0.0055188124724576!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00553676323149692!GO:0007040;lysosome organization and biogenesis;0.00553794271818026!GO:0040008;regulation of growth;0.00560913607783273!GO:0006144;purine base metabolic process;0.00566553407846231!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00572232150730361!GO:0016272;prefoldin complex;0.0058188287717804!GO:0032508;DNA duplex unwinding;0.00629025198018043!GO:0032392;DNA geometric change;0.00629025198018043!GO:0048468;cell development;0.00629349978327743!GO:0000910;cytokinesis;0.00629813986406223!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00637759363354418!GO:0000428;DNA-directed RNA polymerase complex;0.00637759363354418!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00637759363354418!GO:0006350;transcription;0.00642885277774223!GO:0030518;steroid hormone receptor signaling pathway;0.00645294364027427!GO:0019206;nucleoside kinase activity;0.0064849303131612!GO:0043488;regulation of mRNA stability;0.00663015975839023!GO:0043487;regulation of RNA stability;0.00663015975839023!GO:0005684;U2-dependent spliceosome;0.00695113216080685!GO:0043022;ribosome binding;0.00726142099620704!GO:0000339;RNA cap binding;0.00734074434785554!GO:0005876;spindle microtubule;0.00734074434785554!GO:0007088;regulation of mitosis;0.00747175700027304!GO:0044433;cytoplasmic vesicle part;0.00759893094216393!GO:0012506;vesicle membrane;0.00768416045013984!GO:0016301;kinase activity;0.00776745905913574!GO:0017166;vinculin binding;0.00778663401862119!GO:0007093;mitotic cell cycle checkpoint;0.00798523941299158!GO:0016251;general RNA polymerase II transcription factor activity;0.00810843762990945!GO:0008180;signalosome;0.00825973309632913!GO:0031124;mRNA 3'-end processing;0.00897317120138141!GO:0031072;heat shock protein binding;0.00915793116034308!GO:0006338;chromatin remodeling;0.00928286041717243!GO:0004527;exonuclease activity;0.00928286041717243!GO:0006611;protein export from nucleus;0.00965033132232582!GO:0004003;ATP-dependent DNA helicase activity;0.00982839704776331!GO:0000049;tRNA binding;0.00985173773855222!GO:0032984;macromolecular complex disassembly;0.00985173773855222!GO:0045941;positive regulation of transcription;0.00986284739668386!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00994222909691964!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0101462980464787!GO:0051287;NAD binding;0.0102236126371617!GO:0022890;inorganic cation transmembrane transporter activity;0.0104316365880177!GO:0006892;post-Golgi vesicle-mediated transport;0.010476565357492!GO:0045893;positive regulation of transcription, DNA-dependent;0.0106234677439687!GO:0030119;AP-type membrane coat adaptor complex;0.0106234677439687!GO:0007033;vacuole organization and biogenesis;0.0107853873753371!GO:0009112;nucleobase metabolic process;0.0107861710638658!GO:0030029;actin filament-based process;0.0109338601946083!GO:0005832;chaperonin-containing T-complex;0.0110476263939378!GO:0005862;muscle thin filament tropomyosin;0.011221488358407!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0116029373230581!GO:0006268;DNA unwinding during replication;0.0116193834039483!GO:0003702;RNA polymerase II transcription factor activity;0.0122976701960633!GO:0031625;ubiquitin protein ligase binding;0.0122976701960633!GO:0046483;heterocycle metabolic process;0.0126519311288207!GO:0007050;cell cycle arrest;0.0126568208221354!GO:0006417;regulation of translation;0.0126939433130261!GO:0006275;regulation of DNA replication;0.0128357201608497!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0128505546969719!GO:0001726;ruffle;0.0134224556036752!GO:0008632;apoptotic program;0.0138300195853173!GO:0031901;early endosome membrane;0.0138300195853173!GO:0005869;dynactin complex;0.0140983242937527!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0142806439633843!GO:0050681;androgen receptor binding;0.0145148757854507!GO:0003711;transcription elongation regulator activity;0.014614801571603!GO:0043241;protein complex disassembly;0.0147551057246646!GO:0030032;lamellipodium biogenesis;0.0147551057246646!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0148484706659221!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0148922642218305!GO:0015002;heme-copper terminal oxidase activity;0.0148922642218305!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0148922642218305!GO:0004129;cytochrome-c oxidase activity;0.0148922642218305!GO:0016741;transferase activity, transferring one-carbon groups;0.0149277872874692!GO:0006220;pyrimidine nucleotide metabolic process;0.0152499897706289!GO:0006378;mRNA polyadenylation;0.016111617960113!GO:0010468;regulation of gene expression;0.0162223945762668!GO:0007021;tubulin folding;0.0162558147943057!GO:0004177;aminopeptidase activity;0.016912305967947!GO:0065009;regulation of a molecular function;0.0173494697712149!GO:0008168;methyltransferase activity;0.0177156069332752!GO:0008092;cytoskeletal protein binding;0.0183430261886228!GO:0045892;negative regulation of transcription, DNA-dependent;0.0183430261886228!GO:0030131;clathrin adaptor complex;0.0184069014463125!GO:0005758;mitochondrial intermembrane space;0.0185750743243467!GO:0008047;enzyme activator activity;0.0190639283297464!GO:0044262;cellular carbohydrate metabolic process;0.0192696517789775!GO:0008287;protein serine/threonine phosphatase complex;0.0193002118530452!GO:0043065;positive regulation of apoptosis;0.0198282076186355!GO:0050662;coenzyme binding;0.0200582419902128!GO:0005669;transcription factor TFIID complex;0.0202417325059148!GO:0048518;positive regulation of biological process;0.020566854248493!GO:0003746;translation elongation factor activity;0.0211244811096375!GO:0007346;regulation of progression through mitotic cell cycle;0.0213630550252857!GO:0047485;protein N-terminus binding;0.0215611444064301!GO:0006376;mRNA splice site selection;0.0215611444064301!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0215611444064301!GO:0043068;positive regulation of programmed cell death;0.0223057970740069!GO:0006740;NADPH regeneration;0.0223057970740069!GO:0006098;pentose-phosphate shunt;0.0223057970740069!GO:0030125;clathrin vesicle coat;0.0227404995859577!GO:0030665;clathrin coated vesicle membrane;0.0227404995859577!GO:0000792;heterochromatin;0.0228265720114349!GO:0032906;transforming growth factor-beta2 production;0.0228885762997684!GO:0032909;regulation of transforming growth factor-beta2 production;0.0228885762997684!GO:0000287;magnesium ion binding;0.0232156637529414!GO:0009116;nucleoside metabolic process;0.0233159451930488!GO:0007264;small GTPase mediated signal transduction;0.0233159451930488!GO:0006520;amino acid metabolic process;0.0233339130282089!GO:0006643;membrane lipid metabolic process;0.0233339130282089!GO:0043189;H4/H2A histone acetyltransferase complex;0.0233617989082114!GO:0008637;apoptotic mitochondrial changes;0.0233646467304497!GO:0006778;porphyrin metabolic process;0.0240693404410929!GO:0033013;tetrapyrrole metabolic process;0.0240693404410929!GO:0009303;rRNA transcription;0.0241712956900723!GO:0031123;RNA 3'-end processing;0.0247533348384687!GO:0016584;nucleosome positioning;0.0247854452794796!GO:0008538;proteasome activator activity;0.0247854452794796!GO:0035267;NuA4 histone acetyltransferase complex;0.0248519433374502!GO:0032940;secretion by cell;0.0248592651684727!GO:0032200;telomere organization and biogenesis;0.0263244624260741!GO:0000723;telomere maintenance;0.0263244624260741!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0265410921167173!GO:0031970;organelle envelope lumen;0.0265533336425242!GO:0019752;carboxylic acid metabolic process;0.0270360862010324!GO:0000209;protein polyubiquitination;0.0271097652827718!GO:0004532;exoribonuclease activity;0.0275173747421312!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0275173747421312!GO:0033673;negative regulation of kinase activity;0.0278355920831335!GO:0006469;negative regulation of protein kinase activity;0.0278355920831335!GO:0022411;cellular component disassembly;0.0278840463684448!GO:0051348;negative regulation of transferase activity;0.0287940713852814!GO:0033559;unsaturated fatty acid metabolic process;0.0291534762579449!GO:0006636;unsaturated fatty acid biosynthetic process;0.0291534762579449!GO:0046519;sphingoid metabolic process;0.0292653289772689!GO:0045792;negative regulation of cell size;0.0294050052157846!GO:0008017;microtubule binding;0.0294410079678633!GO:0031529;ruffle organization and biogenesis;0.0294743933930852!GO:0000781;chromosome, telomeric region;0.0296599818549424!GO:0006082;organic acid metabolic process;0.0297707911622394!GO:0008610;lipid biosynthetic process;0.0308563334427598!GO:0003923;GPI-anchor transamidase activity;0.0308563334427598!GO:0016255;attachment of GPI anchor to protein;0.0308563334427598!GO:0042765;GPI-anchor transamidase complex;0.0308563334427598!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0311080491351631!GO:0000152;nuclear ubiquitin ligase complex;0.0316963478895376!GO:0008408;3'-5' exonuclease activity;0.0319305527775536!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0321432284597059!GO:0006607;NLS-bearing substrate import into nucleus;0.0321432284597059!GO:0003725;double-stranded RNA binding;0.0331086560942023!GO:0030522;intracellular receptor-mediated signaling pathway;0.0333265056752051!GO:0007004;telomere maintenance via telomerase;0.0334343801044793!GO:0000030;mannosyltransferase activity;0.033586089109594!GO:0031326;regulation of cellular biosynthetic process;0.0340068341411906!GO:0004518;nuclease activity;0.0340716127921745!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0342221328968765!GO:0007034;vacuolar transport;0.0342811782762529!GO:0030308;negative regulation of cell growth;0.0343166656627425!GO:0018193;peptidyl-amino acid modification;0.0348051896022946!GO:0006695;cholesterol biosynthetic process;0.0351305613517784!GO:0006672;ceramide metabolic process;0.0351976477581514!GO:0005096;GTPase activator activity;0.0355777232568028!GO:0005092;GDP-dissociation inhibitor activity;0.0355852395942694!GO:0005784;translocon complex;0.0359179709513275!GO:0016407;acetyltransferase activity;0.0360908456795284!GO:0006779;porphyrin biosynthetic process;0.0367618844253001!GO:0033014;tetrapyrrole biosynthetic process;0.0367618844253001!GO:0006458;'de novo' protein folding;0.0370475381649439!GO:0051084;'de novo' posttranslational protein folding;0.0370475381649439!GO:0003756;protein disulfide isomerase activity;0.0373255574069997!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0373255574069997!GO:0033239;negative regulation of amine metabolic process;0.0374534465080665!GO:0045763;negative regulation of amino acid metabolic process;0.0374534465080665!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0374534465080665!GO:0022415;viral reproductive process;0.0383701298206215!GO:0043130;ubiquitin binding;0.0386076283749223!GO:0032182;small conjugating protein binding;0.0386076283749223!GO:0008601;protein phosphatase type 2A regulator activity;0.038719523269732!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0388964718505486!GO:0007030;Golgi organization and biogenesis;0.0396126790369633!GO:0043596;nuclear replication fork;0.0398456232400669!GO:0009889;regulation of biosynthetic process;0.03994028651188!GO:0008097;5S rRNA binding;0.0399545270529676!GO:0000922;spindle pole;0.040785390190324!GO:0046112;nucleobase biosynthetic process;0.0413801483063505!GO:0042393;histone binding;0.0415686597360225!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0424479846767825!GO:0010257;NADH dehydrogenase complex assembly;0.0424479846767825!GO:0033108;mitochondrial respiratory chain complex assembly;0.0424479846767825!GO:0045334;clathrin-coated endocytic vesicle;0.0434896704085083!GO:0006360;transcription from RNA polymerase I promoter;0.043507156284237!GO:0008320;protein transmembrane transporter activity;0.0450265815399379!GO:0046426;negative regulation of JAK-STAT cascade;0.0452680063575704!GO:0042026;protein refolding;0.0453674698018589!GO:0000178;exosome (RNase complex);0.045541298998903!GO:0048146;positive regulation of fibroblast proliferation;0.0457516548631388!GO:0042168;heme metabolic process;0.0457536686307594!GO:0006979;response to oxidative stress;0.0467967104860671!GO:0022884;macromolecule transmembrane transporter activity;0.0474233434067241!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0474233434067241!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0479228378967574!GO:0000123;histone acetyltransferase complex;0.0483228206858411!GO:0030433;ER-associated protein catabolic process;0.048394393257579!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.048394393257579!GO:0043414;biopolymer methylation;0.0484432058474234!GO:0016126;sterol biosynthetic process;0.048605374513764!GO:0030911;TPR domain binding;0.0487940328954583!GO:0009262;deoxyribonucleotide metabolic process;0.0489031166382124!GO:0006984;ER-nuclear signaling pathway;0.04891381338361!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0491823822031189!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0491823822031189!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0499602975072028 | |||
|sample_id=10854 | |sample_id=10854 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=mesothelium | |sample_tissue=mesothelium | ||
|top_motifs=POU1F1:1.83062969111;FOX{I1,J2}:1.68096674936;AIRE:1.55462489335;PAX4:1.24207283213;ARID5B:1.20536633613;ZNF384:1.13823183175;NR3C1:1.05753973581;EVI1:1.00855879361;RXR{A,B,G}:0.974865003627;HSF1,2:0.965938800105;TEAD1:0.951258190261;bHLH_family:0.951218505334;LMO2:0.936216453307;STAT5{A,B}:0.934956368302;HOX{A5,B5}:0.886478070453;UFEwm:0.873509299177;TP53:0.852893172856;NRF1:0.846302050908;GATA4:0.824255614248;ONECUT1,2:0.770023626455;HOXA9_MEIS1:0.747486509925;ELK1,4_GABP{A,B1}:0.738675079833;PPARG:0.706999162341;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.675486872438;NKX6-1,2:0.667167456715;ZIC1..3:0.622421681772;RXRA_VDR{dimer}:0.611116393749;FOXQ1:0.601678391448;NKX2-2,8:0.588538377256;ZNF143:0.567521058211;MYB:0.554904818908;TFDP1:0.530654150344;KLF4:0.527640035607;E2F1..5:0.517399350817;ADNP_IRX_SIX_ZHX:0.485577931664;CDX1,2,4:0.479353149793;PITX1..3:0.474994525178;PAX8:0.473658953246;ZBTB16:0.46526948967;LHX3,4:0.458965873981;IKZF1:0.455962544708;RFX1:0.433843009195;GZF1:0.432905228349;NFE2L1:0.424960280269;FOXD3:0.420379714067;GTF2A1,2:0.414009465845;PRRX1,2:0.389075425382;BREu{core}:0.370315618464;POU3F1..4:0.361571619839;TEF:0.298295302821;ZBTB6:0.290772410999;ZFP161:0.290424358814;TFAP2B:0.24705052953;NKX2-1,4:0.246704147729;MYOD1:0.245272488641;FOXM1:0.238375980432;HMX1:0.231100442032;BACH2:0.174929358708;PAX1,9:0.163035582473;EP300:0.160176484366;PAX6:0.157512624086;ALX4:0.150683515774;NKX3-1:0.150431242364;HIF1A:0.143699664036;NR6A1:0.136676906526;LEF1_TCF7_TCF7L1,2:0.127907170604;TOPORS:0.124891752834;GTF2I:0.114377341639;MYBL2:0.11343130383;TLX1..3_NFIC{dimer}:0.10056678921;HMGA1,2:0.0995488628706;CRX:0.0826072232837;HNF4A_NR2F1,2:0.0825859804075;FOXN1:0.0685773897326;YY1:0.0581593517751;AR:0.0426453482525;GFI1B:0.0275488304387;FOS_FOS{B,L1}_JUN{B,D}:0.0262151852754;EN1,2:0.0216773643311;RBPJ:0.0192187001128;FOXA2:0.0170310755101;MZF1:0.0163605175762;NFIX:0.0139548337489;PAX5:0.0128929990472;GFI1:0.00617349409984;TFCP2:0.00389683387297;ATF6:-0.00265940336788;TFAP2{A,C}:-0.00603299211014;OCT4_SOX2{dimer}:-0.0233703882061;PRDM1:-0.0240079090138;NR1H4:-0.0455396281941;IKZF2:-0.0624016575478;NFY{A,B,C}:-0.0669385438698;HOX{A4,D4}:-0.0739251109284;NFE2:-0.0754649668812;ZNF148:-0.0825185916598;FOXP1:-0.0848352261255;FOXL1:-0.0890391249871;HBP1_HMGB_SSRP1_UBTF:-0.0895757792385;RREB1:-0.0936273432741;HES1:-0.112052016576;MED-1{core}:-0.116191093353;HLF:-0.116563383491;BPTF:-0.13919772536;SOX2:-0.142316913303;AHR_ARNT_ARNT2:-0.151976451679;FOSL2:-0.15874513704;XBP1:-0.161910497574;ESR1:-0.177785309093;MAZ:-0.179868200778;HAND1,2:-0.182481604412;CDC5L:-0.204342288968;SNAI1..3:-0.207538014326;HIC1:-0.211705991424;STAT1,3:-0.21305998685;CUX2:-0.225902650119;MTE{core}:-0.23879530464;EGR1..3:-0.268554065346;IRF1,2:-0.271875345247;DMAP1_NCOR{1,2}_SMARC:-0.28233843503;SRF:-0.284950077772;MAFB:-0.28847698326;SPZ1:-0.305064558634;FOXP3:-0.308011597183;TBP:-0.314532626186;ELF1,2,4:-0.315703900544;NFE2L2:-0.322849346247;NANOG:-0.330486276268;VSX1,2:-0.343776163005;NFKB1_REL_RELA:-0.346606470164;NKX3-2:-0.346826836082;NFATC1..3:-0.347458331639;T:-0.366618049528;SOX17:-0.382952236479;ATF5_CREB3:-0.392195753334;IRF7:-0.397549389771;SPIB:-0.401943805828;GCM1,2:-0.404726518178;HNF1A:-0.407235391372;ALX1:-0.415398052618;ZEB1:-0.430934150008;SOX{8,9,10}:-0.432071647326;MYFfamily:-0.43732058547;ESRRA:-0.439074982327;PDX1:-0.442235514805;SMAD1..7,9:-0.445469795776;RFX2..5_RFXANK_RFXAP:-0.446104439218;EBF1:-0.463085820077;TAL1_TCF{3,4,12}:-0.468173664155;CEBPA,B_DDIT3:-0.483327205998;MTF1:-0.485350358298;TBX4,5:-0.485912430177;POU2F1..3:-0.495189737086;NKX2-3_NKX2-5:-0.50173098202;PATZ1:-0.504438593719;PAX3,7:-0.506748159084;RUNX1..3:-0.508546394209;STAT2,4,6:-0.52016282715;POU5F1:-0.554414977399;NFIL3:-0.559032456803;MEF2{A,B,C,D}:-0.565014762357;ZNF423:-0.574599749738;REST:-0.594343863405;SPI1:-0.595597301473;ETS1,2:-0.627473078388;SP1:-0.628300911059;GATA6:-0.629182116489;XCPE1{core}:-0.643186670262;ATF2:-0.654451151722;SREBF1,2:-0.666626589473;DBP:-0.668252199932;NHLH1,2:-0.668256610419;FOXO1,3,4:-0.671336812149;NR5A1,2:-0.692391160175;ATF4:-0.753129787029;FOX{D1,D2}:-0.774491589597;PAX2:-0.774996239425;PBX1:-0.87442811365;TLX2:-0.889399099675;POU6F1:-0.903977867269;GLI1..3:-0.935887204996;CREB1:-0.957245201418;ZNF238:-0.960048209499;FOX{F1,F2,J1}:-1.03888793586;NANOG{mouse}:-1.04650740787;TFAP4:-1.09068576497;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16431119196;HOX{A6,A7,B6,B7}:-1.19358350973;SOX5:-1.19744530978;TGIF1:-1.21293147274;RORA:-1.24583515816;JUN:-1.29000820698 | |top_motifs=POU1F1:1.83062969111;FOX{I1,J2}:1.68096674936;AIRE:1.55462489335;PAX4:1.24207283213;ARID5B:1.20536633613;ZNF384:1.13823183175;NR3C1:1.05753973581;EVI1:1.00855879361;RXR{A,B,G}:0.974865003627;HSF1,2:0.965938800105;TEAD1:0.951258190261;bHLH_family:0.951218505334;LMO2:0.936216453307;STAT5{A,B}:0.934956368302;HOX{A5,B5}:0.886478070453;UFEwm:0.873509299177;TP53:0.852893172856;NRF1:0.846302050908;GATA4:0.824255614248;ONECUT1,2:0.770023626455;HOXA9_MEIS1:0.747486509925;ELK1,4_GABP{A,B1}:0.738675079833;PPARG:0.706999162341;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.675486872438;NKX6-1,2:0.667167456715;ZIC1..3:0.622421681772;RXRA_VDR{dimer}:0.611116393749;FOXQ1:0.601678391448;NKX2-2,8:0.588538377256;ZNF143:0.567521058211;MYB:0.554904818908;TFDP1:0.530654150344;KLF4:0.527640035607;E2F1..5:0.517399350817;ADNP_IRX_SIX_ZHX:0.485577931664;CDX1,2,4:0.479353149793;PITX1..3:0.474994525178;PAX8:0.473658953246;ZBTB16:0.46526948967;LHX3,4:0.458965873981;IKZF1:0.455962544708;RFX1:0.433843009195;GZF1:0.432905228349;NFE2L1:0.424960280269;FOXD3:0.420379714067;GTF2A1,2:0.414009465845;PRRX1,2:0.389075425382;BREu{core}:0.370315618464;POU3F1..4:0.361571619839;TEF:0.298295302821;ZBTB6:0.290772410999;ZFP161:0.290424358814;TFAP2B:0.24705052953;NKX2-1,4:0.246704147729;MYOD1:0.245272488641;FOXM1:0.238375980432;HMX1:0.231100442032;BACH2:0.174929358708;PAX1,9:0.163035582473;EP300:0.160176484366;PAX6:0.157512624086;ALX4:0.150683515774;NKX3-1:0.150431242364;HIF1A:0.143699664036;NR6A1:0.136676906526;LEF1_TCF7_TCF7L1,2:0.127907170604;TOPORS:0.124891752834;GTF2I:0.114377341639;MYBL2:0.11343130383;TLX1..3_NFIC{dimer}:0.10056678921;HMGA1,2:0.0995488628706;CRX:0.0826072232837;HNF4A_NR2F1,2:0.0825859804075;FOXN1:0.0685773897326;YY1:0.0581593517751;AR:0.0426453482525;GFI1B:0.0275488304387;FOS_FOS{B,L1}_JUN{B,D}:0.0262151852754;EN1,2:0.0216773643311;RBPJ:0.0192187001128;FOXA2:0.0170310755101;MZF1:0.0163605175762;NFIX:0.0139548337489;PAX5:0.0128929990472;GFI1:0.00617349409984;TFCP2:0.00389683387297;ATF6:-0.00265940336788;TFAP2{A,C}:-0.00603299211014;OCT4_SOX2{dimer}:-0.0233703882061;PRDM1:-0.0240079090138;NR1H4:-0.0455396281941;IKZF2:-0.0624016575478;NFY{A,B,C}:-0.0669385438698;HOX{A4,D4}:-0.0739251109284;NFE2:-0.0754649668812;ZNF148:-0.0825185916598;FOXP1:-0.0848352261255;FOXL1:-0.0890391249871;HBP1_HMGB_SSRP1_UBTF:-0.0895757792385;RREB1:-0.0936273432741;HES1:-0.112052016576;MED-1{core}:-0.116191093353;HLF:-0.116563383491;BPTF:-0.13919772536;SOX2:-0.142316913303;AHR_ARNT_ARNT2:-0.151976451679;FOSL2:-0.15874513704;XBP1:-0.161910497574;ESR1:-0.177785309093;MAZ:-0.179868200778;HAND1,2:-0.182481604412;CDC5L:-0.204342288968;SNAI1..3:-0.207538014326;HIC1:-0.211705991424;STAT1,3:-0.21305998685;CUX2:-0.225902650119;MTE{core}:-0.23879530464;EGR1..3:-0.268554065346;IRF1,2:-0.271875345247;DMAP1_NCOR{1,2}_SMARC:-0.28233843503;SRF:-0.284950077772;MAFB:-0.28847698326;SPZ1:-0.305064558634;FOXP3:-0.308011597183;TBP:-0.314532626186;ELF1,2,4:-0.315703900544;NFE2L2:-0.322849346247;NANOG:-0.330486276268;VSX1,2:-0.343776163005;NFKB1_REL_RELA:-0.346606470164;NKX3-2:-0.346826836082;NFATC1..3:-0.347458331639;T:-0.366618049528;SOX17:-0.382952236479;ATF5_CREB3:-0.392195753334;IRF7:-0.397549389771;SPIB:-0.401943805828;GCM1,2:-0.404726518178;HNF1A:-0.407235391372;ALX1:-0.415398052618;ZEB1:-0.430934150008;SOX{8,9,10}:-0.432071647326;MYFfamily:-0.43732058547;ESRRA:-0.439074982327;PDX1:-0.442235514805;SMAD1..7,9:-0.445469795776;RFX2..5_RFXANK_RFXAP:-0.446104439218;EBF1:-0.463085820077;TAL1_TCF{3,4,12}:-0.468173664155;CEBPA,B_DDIT3:-0.483327205998;MTF1:-0.485350358298;TBX4,5:-0.485912430177;POU2F1..3:-0.495189737086;NKX2-3_NKX2-5:-0.50173098202;PATZ1:-0.504438593719;PAX3,7:-0.506748159084;RUNX1..3:-0.508546394209;STAT2,4,6:-0.52016282715;POU5F1:-0.554414977399;NFIL3:-0.559032456803;MEF2{A,B,C,D}:-0.565014762357;ZNF423:-0.574599749738;REST:-0.594343863405;SPI1:-0.595597301473;ETS1,2:-0.627473078388;SP1:-0.628300911059;GATA6:-0.629182116489;XCPE1{core}:-0.643186670262;ATF2:-0.654451151722;SREBF1,2:-0.666626589473;DBP:-0.668252199932;NHLH1,2:-0.668256610419;FOXO1,3,4:-0.671336812149;NR5A1,2:-0.692391160175;ATF4:-0.753129787029;FOX{D1,D2}:-0.774491589597;PAX2:-0.774996239425;PBX1:-0.87442811365;TLX2:-0.889399099675;POU6F1:-0.903977867269;GLI1..3:-0.935887204996;CREB1:-0.957245201418;ZNF238:-0.960048209499;FOX{F1,F2,J1}:-1.03888793586;NANOG{mouse}:-1.04650740787;TFAP4:-1.09068576497;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16431119196;HOX{A6,A7,B6,B7}:-1.19358350973;SOX5:-1.19744530978;TGIF1:-1.21293147274;RORA:-1.24583515816;JUN:-1.29000820698 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10854-111F8;search_select_hide=table117:FF:10854-111F8 | |||
}} | }} | ||
Latest revision as of 15:10, 3 June 2020
| Name: | mesothelioma cell line:Mero-83 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13070 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13070
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13070
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.899 |
| 10 | 10 | 0.872 |
| 100 | 100 | 0.093 |
| 101 | 101 | 0.377 |
| 102 | 102 | 0.748 |
| 103 | 103 | 0.0866 |
| 104 | 104 | 0.458 |
| 105 | 105 | 0.00803 |
| 106 | 106 | 0.0013 |
| 107 | 107 | 0.104 |
| 108 | 108 | 0.743 |
| 109 | 109 | 0.455 |
| 11 | 11 | 0.392 |
| 110 | 110 | 0.945 |
| 111 | 111 | 0.776 |
| 112 | 112 | 0.428 |
| 113 | 113 | 0.0149 |
| 114 | 114 | 0.609 |
| 115 | 115 | 0.744 |
| 116 | 116 | 0.904 |
| 117 | 117 | 0.754 |
| 118 | 118 | 0.0984 |
| 119 | 119 | 0.648 |
| 12 | 12 | 0.1 |
| 120 | 120 | 0.0463 |
| 121 | 121 | 0.327 |
| 122 | 122 | 0.5 |
| 123 | 123 | 0.181 |
| 124 | 124 | 0.0226 |
| 125 | 125 | 0.929 |
| 126 | 126 | 0.139 |
| 127 | 127 | 0.677 |
| 128 | 128 | 1.29755e-4 |
| 129 | 129 | 0.255 |
| 13 | 13 | 0.95 |
| 130 | 130 | 0.996 |
| 131 | 131 | 0.531 |
| 132 | 132 | 0.334 |
| 133 | 133 | 1 |
| 134 | 134 | 0.332 |
| 135 | 135 | 0.0174 |
| 136 | 136 | 0.308 |
| 137 | 137 | 0.324 |
| 138 | 138 | 0.469 |
| 139 | 139 | 0.709 |
| 14 | 14 | 0.218 |
| 140 | 140 | 0.997 |
| 141 | 141 | 0.142 |
| 142 | 142 | 0.164 |
| 143 | 143 | 0.609 |
| 144 | 144 | 0.656 |
| 145 | 145 | 0.732 |
| 146 | 146 | 0.493 |
| 147 | 147 | 0.624 |
| 148 | 148 | 0.145 |
| 149 | 149 | 0.903 |
| 15 | 15 | 0.853 |
| 150 | 150 | 0.712 |
| 151 | 151 | 0.593 |
| 152 | 152 | 0.0669 |
| 153 | 153 | 0.652 |
| 154 | 154 | 0.885 |
| 155 | 155 | 0.15 |
| 156 | 156 | 0.462 |
| 157 | 157 | 0.719 |
| 158 | 158 | 0.0418 |
| 159 | 159 | 0.597 |
| 16 | 16 | 0.836 |
| 160 | 160 | 0.94 |
| 161 | 161 | 0.391 |
| 162 | 162 | 0.198 |
| 163 | 163 | 0.994 |
| 164 | 164 | 0.0134 |
| 165 | 165 | 0.573 |
| 166 | 166 | 0.477 |
| 167 | 167 | 0.188 |
| 168 | 168 | 0.707 |
| 169 | 169 | 0.254 |
| 17 | 17 | 0.894 |
| 18 | 18 | 0.756 |
| 19 | 19 | 0.506 |
| 2 | 2 | 0.294 |
| 20 | 20 | 0.304 |
| 21 | 21 | 0.00852 |
| 22 | 22 | 0.0702 |
| 23 | 23 | 0.281 |
| 24 | 24 | 0.177 |
| 25 | 25 | 0.538 |
| 26 | 26 | 0.427 |
| 27 | 27 | 0.741 |
| 28 | 28 | 0.977 |
| 29 | 29 | 0.411 |
| 3 | 3 | 0.827 |
| 30 | 30 | 0.46 |
| 31 | 31 | 0.914 |
| 32 | 32 | 0.365 |
| 33 | 33 | 0.893 |
| 34 | 34 | 0.143 |
| 35 | 35 | 0.968 |
| 36 | 36 | 0.67 |
| 37 | 37 | 0.861 |
| 38 | 38 | 0.894 |
| 39 | 39 | 0.659 |
| 4 | 4 | 0.684 |
| 40 | 40 | 0.764 |
| 41 | 41 | 0.0446 |
| 42 | 42 | 0.549 |
| 43 | 43 | 0.0682 |
| 44 | 44 | 0.796 |
| 45 | 45 | 0.242 |
| 46 | 46 | 0.872 |
| 47 | 47 | 0.943 |
| 48 | 48 | 0.663 |
| 49 | 49 | 0.0927 |
| 5 | 5 | 0.688 |
| 50 | 50 | 0.861 |
| 51 | 51 | 0.802 |
| 52 | 52 | 0.0345 |
| 53 | 53 | 0.375 |
| 54 | 54 | 0.725 |
| 55 | 55 | 0.786 |
| 56 | 56 | 0.81 |
| 57 | 57 | 0.296 |
| 58 | 58 | 0.275 |
| 59 | 59 | 0.133 |
| 6 | 6 | 0.968 |
| 60 | 60 | 0.0241 |
| 61 | 61 | 0.815 |
| 62 | 62 | 0.736 |
| 63 | 63 | 0.772 |
| 64 | 64 | 0.266 |
| 65 | 65 | 0.473 |
| 66 | 66 | 0.11 |
| 67 | 67 | 0.984 |
| 68 | 68 | 0.878 |
| 69 | 69 | 0.335 |
| 7 | 7 | 0.315 |
| 70 | 70 | 0.904 |
| 71 | 71 | 0.265 |
| 72 | 72 | 0.155 |
| 73 | 73 | 0.266 |
| 74 | 74 | 0.993 |
| 75 | 75 | 0.551 |
| 76 | 76 | 0.466 |
| 77 | 77 | 0.47 |
| 78 | 78 | 0.601 |
| 79 | 79 | 0.571 |
| 8 | 8 | 0.59 |
| 80 | 80 | 0.0664 |
| 81 | 81 | 0.729 |
| 82 | 82 | 0.752 |
| 83 | 83 | 0.642 |
| 84 | 84 | 0.105 |
| 85 | 85 | 0.0432 |
| 86 | 86 | 0.493 |
| 87 | 87 | 0.925 |
| 88 | 88 | 0.728 |
| 89 | 89 | 0.911 |
| 9 | 9 | 0.117 |
| 90 | 90 | 0.126 |
| 91 | 91 | 0.49 |
| 92 | 92 | 0.00888 |
| 93 | 93 | 0.692 |
| 94 | 94 | 0.65 |
| 95 | 95 | 0.659 |
| 96 | 96 | 0.854 |
| 97 | 97 | 0.63 |
| 98 | 98 | 0.62 |
| 99 | 99 | 0.14 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13070
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
