FF:10856-111G1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005521 | |||
|accession_numbers=CAGE;DRX007945;DRR008817;DRZ000242;DRZ001627;DRZ011592;DRZ012977 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0102424 | |fonse_cell_line=FF:0102424 | ||
|fonse_cell_line_closure=FF:0102424 | |fonse_cell_line_closure=FF:0102424 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-95.CNhs13073.10856-111G1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10856-111G1 | |id=FF:10856-111G1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |||
|library_id=CNhs13073 | |||
|library_id_phase_based=2:CNhs13073 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10856 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10856 | |||
|name=mesothelioma cell line:Mero-95 | |name=mesothelioma cell line:Mero-95 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13073,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13073,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.201987983644717,0,0,0.312958156920472,0,-0.116902872794302,0.523890940987485,0,0,0,0,0,0,0,0,0,0,0,0.273495784624894,0,0.168155335256622,0,0,0.0789652127058945,0,0,0.406219326834561,0,0,0.188521755826187,0,0,0,0,0,0,0,0,0,0,0.0861048924880567,0,0.0938046685424063,0.103532346315946,0.0861048924880567,0,0,0,0,0,0,0.311606852825499,0,0,0,0,0,0.00258750661258839,0.219545796509064,0.267690740369302,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0483944261651549,0.0430524462440283,0,0,0.204218386704648,0.0254406908075604,0,0.364683101611907,0,0.0861048924880567,0.0598950741740823,0.235809253295131,0,0,0,0,0,0,0.0861048924880567,0,0,0,0,0,0,0,0,0,0,-0.0174083812165666,0.157930425411789,0,0,0.0093435198818596,0.0485628456259833,0,0,0.0861048924880567,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.0861048924880567,0.0598950741740823,0,0.0861048924880567,0.0861048924880567,0,0,0.0861048924880567,0,0,0.364683101611907,0,0,0.117504226326342,0.0405662370033488,-0.152607873146959,0.129980642101422,0,0,-0.0975027438421849,0,0,0,0,0,0.0861048924880567,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0.0430524462440283,0.227552643993895,0,0.0623800323539195,0.464680613814934,0,0,0,0,0.0415202125649239,0,-0.120879483793741,0.0033847241646394,0,-0.0425120566743979,-0.055712496781182,0,0,0,-0.465472853583378,0.654177487486048,0,0,0.501326471000809,-0.138297172316631,0,0,-0.391044581551635,0,-0.0752074956629358,-0.109463095779488,0,0.0861048924880567,0,0,0,0,0,0,0,0.0861048924880567,0.273495784624894,0,0,0.414598589542726,0.206036278213334,0,0.219545796509064,0.473276187006858,0,0.0226162629078788,0,0.0593863982210565,-0.215355730544778,-0.0241157301553327,-0.101607474928419,-0.0573623654561469,0,-0.144459301598125,-0.0996643893628663,0.215637262285091,-0.129500400544648,-0.147401849371139,0.174701382062059,0,-0.157857101270614,-0.0919208080980783,0.00609834133597135,-0.137869403210412,0.0215109958580488,-0.304261115377419,-0.0526928976805086,0,0,0.0804214989324856,-0.0904820414362412,0,0.118537472335179,0.223073056136291,-0.12074942884685,-0.070134394581191,-0.0729165171236551,0.0928948318856565,0.1848665417751,0.11329281604189,-0.0174295632708878,0.0528991934666046,0.385801970912886,0,0,0,0.0174542934468694,0.32269819309265,-0.0557510560349257,0.00805644472648219,-0.264431665301916,0.644843509535696,0.0923818866841828,0.0301330841019615,-0.0393987517435321,0.32147834560505,0,-0.0746000077687936,0.0861048924880567,0,0,0,0,0.135798086070538,-0.218013797425117,0.131827540056362,0,-0.0617172635780015,0.0730403200548609,0.0189051435246676,0,-0.0322288637030438,0.119307583994244,0,0.180642382410622,0,-0.138584961716675,-0.13658675180436,-0.00857360172582,0.0508813816151208,0.345529140477608,-0.098089486021223,-0.122841796361716,0.204218386704648,0.170745801771912,0.157930425411789,0.643113792927329,-0.0237053028206011,0.096553106606649,0.247649261288161,0.0849784823451851,-0.111437847865409,0,-0.0703386355999052,0,0.0878899458615507,0,-0.0538015427120796,0.0196413656705133,-0.439289374580686,-0.0600550275594178,0,0.0473827223819954,-0.384154970484541,0,0,0.00916256255796461,0.0861048924880567,-0.0642621908465826,0.0335446588900338,0.274865454394415,0.0138358878193659,0,-0.1804882360568,0,0,0.183713528879463,-0.0159302412553243,0,-0.0237966149589992,-0.105025691110778,-0.100038818092676,0.0419593519768547,0.157930425411789,0,0.0674874326203394,0,0,0.857492441589373,0,0.128789584233419,-0.095395916074967,0.0207424882698169,-0.108622809454255,0,0.0861048924880567,-0.177527765965176,0.0861048924880567,0.223158294421789,0,0.0861048924880567,-0.0700809580423484,0.156867671634761,0,0,0,-0.0520852769715935,0.0861048924880567,0,0,0,0,0,0,-0.144574933815752,0.358354440396616,0,0.0804645173470253,0,0,0,0.364683101611907,0.0861048924880567,-0.076151468393882,0,0.891972400474051,0.603928944146608,0.0344757555367228,0.0965283808326441,0,0,0,0,0.188252564735958,0.161446539517183,0,0.026067718914157,0,0,0.0861048924880567,0.0861048924880567,-3.60973011546278e-05,0,0,0,0.0430524462440283,0.100199968358125,0.269482421361205,0,0,0,0.471618506590262,0,0,0,0,-0.093907757546407,0,0,0.36766339886132,0,-0.09566088455811,0.191913905078053,0,-0.121040996610514,0.157141006541476,0.874345417700087,0,0,0.0601312138151621,0,0.256358984329257,0.0726659785667247,0,0,0.0316050402950942,0,0,0,0,0,0,0.00523128410930876,0.109772898254532,0,0,0,0,0.219545796509064,0,0,0,0,0,-0.220618345393295,0.311751910630922,0.0861048924880567,0,0,0,0,0,0,0.112641869233544,0.000982577028155299,0,0,0.0789652127058945,0,0,0,0,0,0.0327512834393763,0,0,0,0,0,0.267690740369302,0,0.0861048924880567,0,0,0.774286097350075,0,0,-0.191257239705457,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034611339376341,-0.0715046181000443,0,0,0,0,0,0,0,-0.116902872794302,0,0.273495784624894,0,0,-0.113884373708977,0.403975967289433,0,0,0.168699399835738,0,0.312958156920472,0,0,0,0,0,0.0861048924880567,0,0,0,0,0,0,0,0.0861048924880567,0,0,0,0,0,0,0,0.161796684955879,0,-0.129277090561121,0.0319961510351861,0,0,-0.189575906389014,0,0,0,0,0,0,0.0117120222155013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157930425411789,0,0,0,0,0,0.0430524462440283,0.00819440243894,0,0,0,0,0,0,0,0.406219326834561,0,0,-0.0489803635564978,0,0,0,0,0.186846772478189,0,0.041799502410676,0.119124595795659,0.000687491618552915,0,0,0,0.0984397720161053,0,0,0.0216642229827971,0.219545796509064,0.0911530379928874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168155335256622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0789652127058945,0,0,0,0,0,0,0,0.219545796509064,0.0430524462440283,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.440006889625707,0.284664633343268,0,0,0,0.461575516144144,0,0,0,0,0,0,0,0,0.0861048924880567,0,0,0,0,0,0,0,0,0,0,0,0.157930425411789,0,0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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=105.7 | |rna_weight_ug=105.7 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9100108 | |sample_cell_catalog=9100108 | ||
|sample_cell_line=Mero-95 | |sample_cell_line=Mero-95 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.98708099797327e-240!GO:0043226;organelle;1.86347590158772e-192!GO:0043231;intracellular membrane-bound organelle;3.04961053055681e-192!GO:0043229;intracellular organelle;3.96724129635117e-192!GO:0043227;membrane-bound organelle;3.96724129635117e-192!GO:0005737;cytoplasm;1.52334495777525e-183!GO:0044422;organelle part;5.73312194076377e-142!GO:0044446;intracellular organelle part;1.91819581869355e-140!GO:0044444;cytoplasmic part;5.73010403053358e-134!GO:0032991;macromolecular complex;4.62582648798862e-97!GO:0044237;cellular metabolic process;5.02448580029609e-90!GO:0044238;primary metabolic process;1.52924519080361e-88!GO:0030529;ribonucleoprotein complex;2.17405911905435e-84!GO:0043170;macromolecule metabolic process;1.9403053987086e-81!GO:0005634;nucleus;3.3737109229813e-76!GO:0005515;protein binding;6.35105228280836e-75!GO:0003723;RNA binding;2.79834921489146e-70!GO:0043233;organelle lumen;1.3332857488706e-69!GO:0031974;membrane-enclosed lumen;1.3332857488706e-69!GO:0044428;nuclear part;3.79001510140513e-69!GO:0005739;mitochondrion;4.3195270101641e-65!GO:0005840;ribosome;4.70989709720905e-52!GO:0006412;translation;1.88245858716635e-50!GO:0019538;protein metabolic process;1.96482353748332e-49!GO:0031090;organelle membrane;4.13193610820892e-49!GO:0043234;protein complex;4.54007352523104e-49!GO:0006396;RNA processing;3.40313862292607e-46!GO:0043283;biopolymer metabolic process;4.01597019016393e-46!GO:0003735;structural constituent of ribosome;7.13192047959202e-46!GO:0016043;cellular component organization and biogenesis;1.46481673256803e-45!GO:0044260;cellular macromolecule metabolic process;5.98300554292493e-44!GO:0033036;macromolecule localization;7.83201247337619e-44!GO:0044267;cellular protein metabolic process;1.19127821782146e-43!GO:0044429;mitochondrial part;1.83405901786461e-43!GO:0015031;protein transport;3.16606777076052e-43!GO:0033279;ribosomal subunit;1.34463358330965e-40!GO:0008104;protein localization;1.34463358330965e-40!GO:0044249;cellular biosynthetic process;1.86554836769196e-40!GO:0031981;nuclear lumen;2.17388567917732e-40!GO:0045184;establishment of protein localization;3.66499788392154e-40!GO:0005829;cytosol;7.3313208777392e-40!GO:0009058;biosynthetic process;9.33867658355852e-40!GO:0010467;gene expression;3.53063045795434e-39!GO:0031967;organelle envelope;1.1644765089997e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.37659107294554e-38!GO:0031975;envelope;2.1131138153517e-38!GO:0016071;mRNA metabolic process;9.22441313408748e-37!GO:0009059;macromolecule biosynthetic process;1.10581586434347e-36!GO:0043228;non-membrane-bound organelle;3.35812843013479e-34!GO:0043232;intracellular non-membrane-bound organelle;3.35812843013479e-34!GO:0065003;macromolecular complex assembly;1.48030013256783e-33!GO:0046907;intracellular transport;4.15638043174422e-33!GO:0008380;RNA splicing;7.32068803186675e-33!GO:0006397;mRNA processing;5.95407471146358e-31!GO:0022607;cellular component assembly;3.92678775318274e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.25015529151741e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.387249012648e-29!GO:0006996;organelle organization and biogenesis;1.83050503806521e-28!GO:0006886;intracellular protein transport;4.34318489912403e-28!GO:0006259;DNA metabolic process;3.74444883947725e-27!GO:0005740;mitochondrial envelope;9.60326484902702e-27!GO:0019866;organelle inner membrane;1.33508158274249e-25!GO:0031966;mitochondrial membrane;2.52674438816199e-25!GO:0000166;nucleotide binding;1.57194749330899e-24!GO:0044445;cytosolic part;2.74418764237611e-24!GO:0003676;nucleic acid binding;3.8717113618255e-24!GO:0005743;mitochondrial inner membrane;5.78210540529218e-24!GO:0005654;nucleoplasm;7.12973060682972e-24!GO:0007049;cell cycle;1.68136601160096e-23!GO:0005681;spliceosome;2.88365683323071e-23!GO:0006119;oxidative phosphorylation;5.60765048303917e-22!GO:0012505;endomembrane system;1.00851602034953e-21!GO:0016462;pyrophosphatase activity;3.06438867043929e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.8596579959502e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.2641734972048e-21!GO:0051649;establishment of cellular localization;6.43859917398082e-21!GO:0015934;large ribosomal subunit;7.23675502720716e-21!GO:0015935;small ribosomal subunit;7.55360047287704e-21!GO:0051641;cellular localization;1.42575916798977e-20!GO:0017111;nucleoside-triphosphatase activity;2.49329817813911e-20!GO:0005783;endoplasmic reticulum;2.8015384517616e-20!GO:0031980;mitochondrial lumen;4.04735326207615e-20!GO:0005759;mitochondrial matrix;4.04735326207615e-20!GO:0016874;ligase activity;1.47408959523276e-19!GO:0044451;nucleoplasm part;6.1309261158956e-19!GO:0005730;nucleolus;2.23224897481271e-18!GO:0044455;mitochondrial membrane part;2.48805246062869e-18!GO:0006457;protein folding;5.76600115298788e-18!GO:0048770;pigment granule;6.8560843459523e-18!GO:0042470;melanosome;6.8560843459523e-18!GO:0022402;cell cycle process;7.33147255960917e-18!GO:0006512;ubiquitin cycle;7.94016063702363e-18!GO:0022618;protein-RNA complex assembly;1.08253268591131e-17!GO:0032553;ribonucleotide binding;1.35512275877877e-17!GO:0032555;purine ribonucleotide binding;1.35512275877877e-17!GO:0017076;purine nucleotide binding;2.66391302307735e-17!GO:0008134;transcription factor binding;3.05793468822127e-17!GO:0044432;endoplasmic reticulum part;3.63331431425672e-17!GO:0043285;biopolymer catabolic process;1.13572841857898e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.61290717633909e-16!GO:0000278;mitotic cell cycle;1.84919321011542e-16!GO:0016070;RNA metabolic process;1.89305528078387e-16!GO:0044265;cellular macromolecule catabolic process;2.17892165914806e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.18730812013868e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.3979854535842e-15!GO:0008135;translation factor activity, nucleic acid binding;1.55375012745474e-15!GO:0019941;modification-dependent protein catabolic process;1.69118706973491e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.69118706973491e-15!GO:0005746;mitochondrial respiratory chain;1.79242605577902e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.03567105578822e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.5766534588664e-15!GO:0051186;cofactor metabolic process;2.7644460442487e-15!GO:0006974;response to DNA damage stimulus;2.7644460442487e-15!GO:0044257;cellular protein catabolic process;3.06815398919299e-15!GO:0005524;ATP binding;3.32227563031799e-15!GO:0032559;adenyl ribonucleotide binding;3.65815455539961e-15!GO:0009057;macromolecule catabolic process;5.10155132748632e-15!GO:0005694;chromosome;6.49643017605455e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.16122429008596e-15!GO:0030554;adenyl nucleotide binding;9.78135153947848e-15!GO:0005761;mitochondrial ribosome;1.00838797518733e-14!GO:0000313;organellar ribosome;1.00838797518733e-14!GO:0044427;chromosomal part;1.66229706345926e-14!GO:0030163;protein catabolic process;2.20745867746809e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.98782185171588e-14!GO:0003954;NADH dehydrogenase activity;2.98782185171588e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.98782185171588e-14!GO:0048193;Golgi vesicle transport;4.08823128221545e-14!GO:0006605;protein targeting;1.03465770832429e-13!GO:0005794;Golgi apparatus;1.07101445091138e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.4483872157258e-13!GO:0044248;cellular catabolic process;3.8878033706722e-13!GO:0005789;endoplasmic reticulum membrane;8.04141929027117e-13!GO:0043412;biopolymer modification;8.87607586681624e-13!GO:0051082;unfolded protein binding;1.33293310322096e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.52184704498807e-12!GO:0000375;RNA splicing, via transesterification reactions;1.52184704498807e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.52184704498807e-12!GO:0006281;DNA repair;1.55550732789726e-12!GO:0042623;ATPase activity, coupled;1.58558817612929e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.81173374316432e-12!GO:0042773;ATP synthesis coupled electron transport;1.81173374316432e-12!GO:0005635;nuclear envelope;1.91720957060087e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.16661739902863e-12!GO:0045271;respiratory chain complex I;2.16661739902863e-12!GO:0005747;mitochondrial respiratory chain complex I;2.16661739902863e-12!GO:0012501;programmed cell death;2.27762291273356e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.28846905519668e-12!GO:0042254;ribosome biogenesis and assembly;3.29842850765361e-12!GO:0016887;ATPase activity;4.65857677794104e-12!GO:0006915;apoptosis;4.76368962672305e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.95929540865416e-12!GO:0016192;vesicle-mediated transport;7.59481194254387e-12!GO:0022403;cell cycle phase;7.59583592457758e-12!GO:0003712;transcription cofactor activity;7.8420754682734e-12!GO:0006464;protein modification process;1.22583195376188e-11!GO:0000087;M phase of mitotic cell cycle;1.54163138301521e-11!GO:0006732;coenzyme metabolic process;1.59478013788645e-11!GO:0051276;chromosome organization and biogenesis;1.63875246065402e-11!GO:0007067;mitosis;2.29076894986069e-11!GO:0051301;cell division;2.48169534736899e-11!GO:0003743;translation initiation factor activity;2.54347168925009e-11!GO:0006413;translational initiation;2.82584607069004e-11!GO:0006260;DNA replication;4.22709032801157e-11!GO:0044453;nuclear membrane part;5.03325533675833e-11!GO:0008219;cell death;5.66406771064029e-11!GO:0016265;death;5.66406771064029e-11!GO:0031965;nuclear membrane;6.0749954712409e-11!GO:0009055;electron carrier activity;7.38312908564502e-11!GO:0006399;tRNA metabolic process;8.81115179597832e-11!GO:0009259;ribonucleotide metabolic process;1.45545160288634e-10!GO:0000074;regulation of progression through cell cycle;1.67388339130864e-10!GO:0051726;regulation of cell cycle;1.6762044107723e-10!GO:0006913;nucleocytoplasmic transport;1.78476607129497e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.02682312529176e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.41850846670888e-10!GO:0008639;small protein conjugating enzyme activity;3.45055984644286e-10!GO:0006163;purine nucleotide metabolic process;4.08530191654719e-10!GO:0051169;nuclear transport;4.23973818041239e-10!GO:0006461;protein complex assembly;6.05382784631433e-10!GO:0043687;post-translational protein modification;7.1070719505065e-10!GO:0004842;ubiquitin-protein ligase activity;8.68918917613955e-10!GO:0009150;purine ribonucleotide metabolic process;9.46573048867631e-10!GO:0009719;response to endogenous stimulus;9.5164938984639e-10!GO:0006446;regulation of translational initiation;9.55861739360067e-10!GO:0019787;small conjugating protein ligase activity;1.18093072592752e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.3273802042444e-09!GO:0006366;transcription from RNA polymerase II promoter;1.74743323989611e-09!GO:0004386;helicase activity;1.83756750719722e-09!GO:0006164;purine nucleotide biosynthetic process;1.99228267827756e-09!GO:0008565;protein transporter activity;2.19271221460877e-09!GO:0065004;protein-DNA complex assembly;2.19323227369666e-09!GO:0009260;ribonucleotide biosynthetic process;2.19566579658143e-09!GO:0016604;nuclear body;2.90975026729452e-09!GO:0005643;nuclear pore;3.43668508075885e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.66495481132825e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.90073412226888e-09!GO:0008026;ATP-dependent helicase activity;4.37094550581351e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.42403653263067e-09!GO:0006323;DNA packaging;4.72437587247792e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.78543815875654e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.78543815875654e-09!GO:0009141;nucleoside triphosphate metabolic process;5.1115519782374e-09!GO:0005793;ER-Golgi intermediate compartment;5.49002176528514e-09!GO:0009060;aerobic respiration;5.82210473571181e-09!GO:0006333;chromatin assembly or disassembly;6.65928995558899e-09!GO:0000785;chromatin;6.8256472745495e-09!GO:0000279;M phase;8.20802117380751e-09!GO:0015986;ATP synthesis coupled proton transport;8.31925368725368e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.31925368725368e-09!GO:0051188;cofactor biosynthetic process;1.02597770357353e-08!GO:0016881;acid-amino acid ligase activity;1.07048605383519e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.34239882681274e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.34239882681274e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.60134825425173e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.60134825425173e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.60134825425173e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.72939933030853e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.72939933030853e-08!GO:0065002;intracellular protein transport across a membrane;1.8024862610674e-08!GO:0009056;catabolic process;3.32665014142623e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.63517779480215e-08!GO:0045333;cellular respiration;4.23308558641274e-08!GO:0043038;amino acid activation;4.50853854350608e-08!GO:0006418;tRNA aminoacylation for protein translation;4.50853854350608e-08!GO:0043039;tRNA aminoacylation;4.50853854350608e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.69409873407695e-08!GO:0046034;ATP metabolic process;4.7623687623243e-08!GO:0003697;single-stranded DNA binding;4.83010678804802e-08!GO:0043067;regulation of programmed cell death;4.90618278594028e-08!GO:0046930;pore complex;5.42894907525758e-08!GO:0019829;cation-transporting ATPase activity;5.47755046187178e-08!GO:0042981;regulation of apoptosis;5.47755046187178e-08!GO:0006364;rRNA processing;5.98701689230912e-08!GO:0050657;nucleic acid transport;9.77039930234574e-08!GO:0051236;establishment of RNA localization;9.77039930234574e-08!GO:0050658;RNA transport;9.77039930234574e-08!GO:0030120;vesicle coat;9.90397135789935e-08!GO:0030662;coated vesicle membrane;9.90397135789935e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.02355092666356e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.0246779814516e-07!GO:0016072;rRNA metabolic process;1.03844047743855e-07!GO:0050794;regulation of cellular process;1.08010495024121e-07!GO:0006403;RNA localization;1.18810604158788e-07!GO:0048523;negative regulation of cellular process;1.21335454547284e-07!GO:0006754;ATP biosynthetic process;1.43284180376306e-07!GO:0006753;nucleoside phosphate metabolic process;1.43284180376306e-07!GO:0016607;nuclear speck;1.54188939458892e-07!GO:0017038;protein import;2.01724638045786e-07!GO:0006099;tricarboxylic acid cycle;2.09019901424682e-07!GO:0046356;acetyl-CoA catabolic process;2.09019901424682e-07!GO:0005768;endosome;2.11989443248445e-07!GO:0048475;coated membrane;2.47533509917241e-07!GO:0030117;membrane coat;2.47533509917241e-07!GO:0006334;nucleosome assembly;3.69334187263181e-07!GO:0016491;oxidoreductase activity;4.21607625779931e-07!GO:0003714;transcription corepressor activity;4.97915672881577e-07!GO:0007005;mitochondrion organization and biogenesis;4.99359685079242e-07!GO:0003924;GTPase activity;5.18650163649709e-07!GO:0004298;threonine endopeptidase activity;5.19811107975715e-07!GO:0015630;microtubule cytoskeleton;5.3564420196052e-07!GO:0009108;coenzyme biosynthetic process;5.57813086495701e-07!GO:0043069;negative regulation of programmed cell death;5.68518834213264e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.6999422400165e-07!GO:0005773;vacuole;8.6999422400165e-07!GO:0006084;acetyl-CoA metabolic process;1.04739655783844e-06!GO:0051187;cofactor catabolic process;1.22755766939102e-06!GO:0031497;chromatin assembly;1.30610704232901e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.33419209677581e-06!GO:0043066;negative regulation of apoptosis;1.33419209677581e-06!GO:0016564;transcription repressor activity;1.55825593307904e-06!GO:0043566;structure-specific DNA binding;1.56699847344566e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.68514814936189e-06!GO:0009117;nucleotide metabolic process;1.70695758126243e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.11590681234326e-06!GO:0045259;proton-transporting ATP synthase complex;2.44297079196056e-06!GO:0009109;coenzyme catabolic process;2.46897054964887e-06!GO:0006916;anti-apoptosis;2.60158215901228e-06!GO:0005667;transcription factor complex;2.82597866742804e-06!GO:0043623;cellular protein complex assembly;2.82750739434241e-06!GO:0051246;regulation of protein metabolic process;2.95854565594927e-06!GO:0000245;spliceosome assembly;3.03991489702874e-06!GO:0031988;membrane-bound vesicle;3.21914120624138e-06!GO:0016740;transferase activity;3.30038615792045e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.41355069955627e-06!GO:0016787;hydrolase activity;3.57519613388209e-06!GO:0016779;nucleotidyltransferase activity;3.84519297608511e-06!GO:0051028;mRNA transport;4.35775702015478e-06!GO:0032446;protein modification by small protein conjugation;4.76707643319585e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.79679892329873e-06!GO:0006752;group transfer coenzyme metabolic process;5.83804286497149e-06!GO:0016567;protein ubiquitination;6.24662993567553e-06!GO:0005788;endoplasmic reticulum lumen;6.41769500491322e-06!GO:0045786;negative regulation of progression through cell cycle;6.47941239775606e-06!GO:0048519;negative regulation of biological process;7.48033730143935e-06!GO:0044431;Golgi apparatus part;9.44431625700583e-06!GO:0006793;phosphorus metabolic process;9.9294216883537e-06!GO:0006796;phosphate metabolic process;9.9294216883537e-06!GO:0005762;mitochondrial large ribosomal subunit;1.03737897436129e-05!GO:0000315;organellar large ribosomal subunit;1.03737897436129e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.38291257006491e-05!GO:0006613;cotranslational protein targeting to membrane;1.38299346894597e-05!GO:0008654;phospholipid biosynthetic process;1.44426893776222e-05!GO:0051789;response to protein stimulus;1.65091372302128e-05!GO:0006986;response to unfolded protein;1.65091372302128e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.76539252380504e-05!GO:0000323;lytic vacuole;1.83475276111391e-05!GO:0005764;lysosome;1.83475276111391e-05!GO:0003713;transcription coactivator activity;1.85789407118573e-05!GO:0051329;interphase of mitotic cell cycle;1.91947668281899e-05!GO:0000151;ubiquitin ligase complex;1.96232294671519e-05!GO:0003724;RNA helicase activity;2.10288232288586e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.25891705000801e-05!GO:0005798;Golgi-associated vesicle;2.63922158355133e-05!GO:0016568;chromatin modification;2.66748602434747e-05!GO:0016310;phosphorylation;2.70996952267434e-05!GO:0051170;nuclear import;2.75462432981493e-05!GO:0005813;centrosome;2.81330894940241e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.13864088813779e-05!GO:0031982;vesicle;3.37433418130409e-05!GO:0050789;regulation of biological process;3.39301924467363e-05!GO:0051325;interphase;3.60825613900348e-05!GO:0031410;cytoplasmic vesicle;4.18239105618339e-05!GO:0016853;isomerase activity;4.47634449582126e-05!GO:0051427;hormone receptor binding;4.77297499109269e-05!GO:0019843;rRNA binding;5.2377953854773e-05!GO:0030867;rough endoplasmic reticulum membrane;5.2377953854773e-05!GO:0015980;energy derivation by oxidation of organic compounds;5.42621509235004e-05!GO:0005815;microtubule organizing center;5.85879858838134e-05!GO:0051168;nuclear export;6.42561530594787e-05!GO:0006612;protein targeting to membrane;6.9534554987699e-05!GO:0006091;generation of precursor metabolites and energy;7.11190887433688e-05!GO:0006606;protein import into nucleus;7.21393319673231e-05!GO:0044440;endosomal part;7.6279028390711e-05!GO:0010008;endosome membrane;7.6279028390711e-05!GO:0031252;leading edge;8.04721885521236e-05!GO:0035257;nuclear hormone receptor binding;9.58996084175064e-05!GO:0005770;late endosome;0.000104085871935721!GO:0005048;signal sequence binding;0.00010575466787054!GO:0005905;coated pit;0.000113386586741233!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00011444291609029!GO:0015399;primary active transmembrane transporter activity;0.00011444291609029!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00011444291609029!GO:0005819;spindle;0.000124033973883927!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000130423684948059!GO:0000314;organellar small ribosomal subunit;0.000130423684948059!GO:0005763;mitochondrial small ribosomal subunit;0.000130423684948059!GO:0045454;cell redox homeostasis;0.000140789215891195!GO:0005525;GTP binding;0.000142468649119188!GO:0006414;translational elongation;0.00015123290953675!GO:0008186;RNA-dependent ATPase activity;0.000156021883841618!GO:0043021;ribonucleoprotein binding;0.00017681982884306!GO:0005657;replication fork;0.000198549044878685!GO:0000775;chromosome, pericentric region;0.000205039918963174!GO:0000139;Golgi membrane;0.000220081116132343!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00022849566653561!GO:0003899;DNA-directed RNA polymerase activity;0.000264389372851395!GO:0033116;ER-Golgi intermediate compartment membrane;0.000282771043638329!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000291999797193163!GO:0008361;regulation of cell size;0.000341959900077564!GO:0016563;transcription activator activity;0.000363803348321934!GO:0000786;nucleosome;0.000370878580059785!GO:0003729;mRNA binding;0.000370878580059785!GO:0007051;spindle organization and biogenesis;0.000373512540109199!GO:0004004;ATP-dependent RNA helicase activity;0.000425404243117!GO:0008250;oligosaccharyl transferase complex;0.000435747747859828!GO:0008033;tRNA processing;0.000436277198448632!GO:0031324;negative regulation of cellular metabolic process;0.000437739142921084!GO:0006261;DNA-dependent DNA replication;0.000443416271081586!GO:0016049;cell growth;0.000485903395437749!GO:0005769;early endosome;0.000493979057929819!GO:0003684;damaged DNA binding;0.000521939940203185!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000527805705498877!GO:0030659;cytoplasmic vesicle membrane;0.000536107970257735!GO:0032561;guanyl ribonucleotide binding;0.000579637484720103!GO:0019001;guanyl nucleotide binding;0.000579637484720103!GO:0005885;Arp2/3 protein complex;0.000588053962840388!GO:0004576;oligosaccharyl transferase activity;0.000654114696252043!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00075814413240801!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000794355700677416!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000802492238014409!GO:0030133;transport vesicle;0.000819203744797699!GO:0051920;peroxiredoxin activity;0.000819203744797699!GO:0030663;COPI coated vesicle membrane;0.000893994560389173!GO:0030126;COPI vesicle coat;0.000893994560389173!GO:0019222;regulation of metabolic process;0.000936511351787091!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000978801845234036!GO:0016363;nuclear matrix;0.000978801845234036!GO:0016859;cis-trans isomerase activity;0.000990986126612238!GO:0001558;regulation of cell growth;0.000994229008800302!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00102759780518264!GO:0046474;glycerophospholipid biosynthetic process;0.0010987423296666!GO:0043492;ATPase activity, coupled to movement of substances;0.00115749451029523!GO:0043681;protein import into mitochondrion;0.00116610894011209!GO:0030137;COPI-coated vesicle;0.00120472782934261!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00122635658717238!GO:0006818;hydrogen transport;0.0012441519299916!GO:0048487;beta-tubulin binding;0.00130295959498862!GO:0018196;peptidyl-asparagine modification;0.00132545849617021!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00132545849617021!GO:0006626;protein targeting to mitochondrion;0.00132545849617021!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00135607893894242!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00135607893894242!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00135607893894242!GO:0015992;proton transport;0.0013633714586473!GO:0048471;perinuclear region of cytoplasm;0.00147193734294293!GO:0046489;phosphoinositide biosynthetic process;0.00149141794131386!GO:0007243;protein kinase cascade;0.0015326450691388!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00156533591550159!GO:0006839;mitochondrial transport;0.00160626842511326!GO:0006402;mRNA catabolic process;0.00161023958872056!GO:0006891;intra-Golgi vesicle-mediated transport;0.00179054009684715!GO:0009165;nucleotide biosynthetic process;0.00181314317076029!GO:0051252;regulation of RNA metabolic process;0.0019348295382074!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00217675153841444!GO:0008094;DNA-dependent ATPase activity;0.00224113276215548!GO:0046467;membrane lipid biosynthetic process;0.00230873959121999!GO:0044433;cytoplasmic vesicle part;0.00238993892857423!GO:0051287;NAD binding;0.00244324351590845!GO:0019899;enzyme binding;0.00244663748721978!GO:0006383;transcription from RNA polymerase III promoter;0.00252654770246474!GO:0015631;tubulin binding;0.00253699184055205!GO:0003690;double-stranded DNA binding;0.00269975587070381!GO:0006401;RNA catabolic process;0.00294254846672909!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00294254846672909!GO:0050662;coenzyme binding;0.00296972302310942!GO:0030132;clathrin coat of coated pit;0.00304611280684782!GO:0006302;double-strand break repair;0.0031325853867109!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00326112591878112!GO:0000082;G1/S transition of mitotic cell cycle;0.00327268780807563!GO:0006509;membrane protein ectodomain proteolysis;0.00327268780807563!GO:0033619;membrane protein proteolysis;0.00327268780807563!GO:0000075;cell cycle checkpoint;0.00332777830964402!GO:0048522;positive regulation of cellular process;0.00340793908806876!GO:0051540;metal cluster binding;0.0034343009635616!GO:0051536;iron-sulfur cluster binding;0.0034343009635616!GO:0030658;transport vesicle membrane;0.00364039221030385!GO:0003746;translation elongation factor activity;0.00364507470672262!GO:0019867;outer membrane;0.00366569410189758!GO:0009892;negative regulation of metabolic process;0.00367616300311251!GO:0044452;nucleolar part;0.00377534119956486!GO:0031968;organelle outer membrane;0.00388110061669326!GO:0008139;nuclear localization sequence binding;0.00393123833589547!GO:0042802;identical protein binding;0.00403666224111206!GO:0000049;tRNA binding;0.00403666224111206!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00405076474993949!GO:0006520;amino acid metabolic process;0.00407953713528108!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00413571881507287!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00413571881507287!GO:0048500;signal recognition particle;0.00416575980837648!GO:0035258;steroid hormone receptor binding;0.0042083708533462!GO:0003682;chromatin binding;0.00428771111245427!GO:0016044;membrane organization and biogenesis;0.00433461687857615!GO:0030036;actin cytoskeleton organization and biogenesis;0.00435623331362198!GO:0012506;vesicle membrane;0.00447191864389222!GO:0051087;chaperone binding;0.0045588330553975!GO:0030134;ER to Golgi transport vesicle;0.00473964144218773!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00485899323527028!GO:0007006;mitochondrial membrane organization and biogenesis;0.00504198576124692!GO:0016481;negative regulation of transcription;0.00510047107113917!GO:0008632;apoptotic program;0.00512732404119497!GO:0019752;carboxylic acid metabolic process;0.00525877507346393!GO:0046483;heterocycle metabolic process;0.00533783233847087!GO:0030118;clathrin coat;0.00533783233847087!GO:0006672;ceramide metabolic process;0.00546250102401386!GO:0030027;lamellipodium;0.00554881134684156!GO:0005791;rough endoplasmic reticulum;0.00558913508258668!GO:0007010;cytoskeleton organization and biogenesis;0.00564146629019528!GO:0006497;protein amino acid lipidation;0.00576956976591962!GO:0043284;biopolymer biosynthetic process;0.00578615249859723!GO:0044262;cellular carbohydrate metabolic process;0.00584161265116894!GO:0017166;vinculin binding;0.00604338484752805!GO:0016272;prefoldin complex;0.00604338484752805!GO:0006405;RNA export from nucleus;0.00608119643676981!GO:0005684;U2-dependent spliceosome;0.00617193984517058!GO:0006082;organic acid metabolic process;0.00617193984517058!GO:0005874;microtubule;0.00634879023953508!GO:0031072;heat shock protein binding;0.00645777461446562!GO:0006352;transcription initiation;0.00693903723831242!GO:0030127;COPII vesicle coat;0.00697676623345047!GO:0012507;ER to Golgi transport vesicle membrane;0.00697676623345047!GO:0006289;nucleotide-excision repair;0.00705321280933285!GO:0016197;endosome transport;0.00730943442659402!GO:0003711;transcription elongation regulator activity;0.00730943442659402!GO:0006611;protein export from nucleus;0.00790981712900248!GO:0006595;polyamine metabolic process;0.00792253866176131!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00802347594682717!GO:0045047;protein targeting to ER;0.00802347594682717!GO:0043488;regulation of mRNA stability;0.00809966205138527!GO:0043487;regulation of RNA stability;0.00809966205138527!GO:0051539;4 iron, 4 sulfur cluster binding;0.00827195157141631!GO:0000776;kinetochore;0.00847531036483523!GO:0000059;protein import into nucleus, docking;0.00857602771680179!GO:0008312;7S RNA binding;0.00861294053754408!GO:0000096;sulfur amino acid metabolic process;0.00863958425799828!GO:0003702;RNA polymerase II transcription factor activity;0.00879441081909377!GO:0006506;GPI anchor biosynthetic process;0.00887972313781673!GO:0006284;base-excision repair;0.00901146147910853!GO:0004177;aminopeptidase activity;0.00903825807078081!GO:0004674;protein serine/threonine kinase activity;0.00922350080880975!GO:0030880;RNA polymerase complex;0.00953847108617072!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00953847108617072!GO:0030521;androgen receptor signaling pathway;0.00975913041176337!GO:0030660;Golgi-associated vesicle membrane;0.00985155037876799!GO:0007088;regulation of mitosis;0.00985989624102981!GO:0030176;integral to endoplasmic reticulum membrane;0.0100613371485071!GO:0032508;DNA duplex unwinding;0.0108520731493915!GO:0032392;DNA geometric change;0.0108520731493915!GO:0007040;lysosome organization and biogenesis;0.0108619641075283!GO:0007050;cell cycle arrest;0.0109967313717253!GO:0030119;AP-type membrane coat adaptor complex;0.0113570168877399!GO:0050681;androgen receptor binding;0.0113662087600993!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0115246493248629!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0115586429391016!GO:0046519;sphingoid metabolic process;0.0115784340903998!GO:0031970;organelle envelope lumen;0.0116683629084333!GO:0031124;mRNA 3'-end processing;0.0118837262355007!GO:0043022;ribosome binding;0.012012677569375!GO:0005741;mitochondrial outer membrane;0.0120206769207635!GO:0001726;ruffle;0.0124386369307177!GO:0003678;DNA helicase activity;0.0125574772607308!GO:0030384;phosphoinositide metabolic process;0.0126251085790788!GO:0043065;positive regulation of apoptosis;0.0127263718433533!GO:0048037;cofactor binding;0.0128749570389414!GO:0006505;GPI anchor metabolic process;0.0131776833701026!GO:0006144;purine base metabolic process;0.0133643782368943!GO:0040008;regulation of growth;0.0136635599987956!GO:0009112;nucleobase metabolic process;0.0137089610376571!GO:0008180;signalosome;0.0137114211939868!GO:0006778;porphyrin metabolic process;0.0139018846853668!GO:0033013;tetrapyrrole metabolic process;0.0139018846853668!GO:0008092;cytoskeletal protein binding;0.014327825430806!GO:0005832;chaperonin-containing T-complex;0.0145860885168636!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0148634525698096!GO:0000428;DNA-directed RNA polymerase complex;0.0148634525698096!GO:0030131;clathrin adaptor complex;0.0149048712467488!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0152873950208053!GO:0007052;mitotic spindle organization and biogenesis;0.0156255299977357!GO:0005637;nuclear inner membrane;0.0156583489844315!GO:0006650;glycerophospholipid metabolic process;0.0157421649343873!GO:0007059;chromosome segregation;0.0161052350621204!GO:0000339;RNA cap binding;0.0164861114474995!GO:0042158;lipoprotein biosynthetic process;0.0165496062879765!GO:0007033;vacuole organization and biogenesis;0.0167560571417287!GO:0043068;positive regulation of programmed cell death;0.0167560571417287!GO:0006268;DNA unwinding during replication;0.0170817993012122!GO:0008610;lipid biosynthetic process;0.0172688907022148!GO:0006740;NADPH regeneration;0.0174514564522188!GO:0006098;pentose-phosphate shunt;0.0174514564522188!GO:0065007;biological regulation;0.0174654173404855!GO:0006378;mRNA polyadenylation;0.0177965929801623!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0180122880079122!GO:0008022;protein C-terminus binding;0.0184781995440313!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0188173782570198!GO:0007093;mitotic cell cycle checkpoint;0.0197392649875839!GO:0043596;nuclear replication fork;0.0197497328138164!GO:0005862;muscle thin filament tropomyosin;0.0201099830085352!GO:0016126;sterol biosynthetic process;0.0202652087854619!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.020272918968534!GO:0015002;heme-copper terminal oxidase activity;0.020272918968534!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.020272918968534!GO:0004129;cytochrome-c oxidase activity;0.020272918968534!GO:0009116;nucleoside metabolic process;0.0203582855839192!GO:0008234;cysteine-type peptidase activity;0.020369593848661!GO:0051101;regulation of DNA binding;0.0204808171436133!GO:0030125;clathrin vesicle coat;0.0206144144460985!GO:0030665;clathrin coated vesicle membrane;0.0206144144460985!GO:0030029;actin filament-based process;0.0209625777983229!GO:0005869;dynactin complex;0.021277103277697!GO:0030496;midbody;0.0218523404791353!GO:0031529;ruffle organization and biogenesis;0.0221232613593783!GO:0000209;protein polyubiquitination;0.0223093944063378!GO:0016251;general RNA polymerase II transcription factor activity;0.0224773378137856!GO:0006984;ER-nuclear signaling pathway;0.0226287037440696!GO:0042168;heme metabolic process;0.0228896174103905!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0234320948007151!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0236223613469189!GO:0031901;early endosome membrane;0.0237316493080534!GO:0006310;DNA recombination;0.0237316493080534!GO:0005774;vacuolar membrane;0.0238718167964916!GO:0006220;pyrimidine nucleotide metabolic process;0.0240300382531647!GO:0030149;sphingolipid catabolic process;0.0242723180253211!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0243524072018259!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0257743187857999!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0259590224589343!GO:0016584;nucleosome positioning;0.0263452340638983!GO:0016301;kinase activity;0.0263452340638983!GO:0046983;protein dimerization activity;0.0272303550393795!GO:0008652;amino acid biosynthetic process;0.0274693234918963!GO:0008601;protein phosphatase type 2A regulator activity;0.0277136304028922!GO:0005758;mitochondrial intermembrane space;0.0277883793436192!GO:0047485;protein N-terminus binding;0.0279219248676768!GO:0051052;regulation of DNA metabolic process;0.0287594789140648!GO:0031371;ubiquitin conjugating enzyme complex;0.0287844005837301!GO:0031323;regulation of cellular metabolic process;0.0288540631713186!GO:0009303;rRNA transcription;0.029557083407951!GO:0008538;proteasome activator activity;0.0297578697359793!GO:0048468;cell development;0.0298810016331076!GO:0004527;exonuclease activity;0.031600010833615!GO:0045045;secretory pathway;0.0317277647138514!GO:0016741;transferase activity, transferring one-carbon groups;0.0331705624046394!GO:0006779;porphyrin biosynthetic process;0.0331705624046394!GO:0033014;tetrapyrrole biosynthetic process;0.0331705624046394!GO:0030518;steroid hormone receptor signaling pathway;0.0332020778977359!GO:0006376;mRNA splice site selection;0.0332748856710212!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0332748856710212!GO:0008168;methyltransferase activity;0.033760210578759!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0339338993168896!GO:0031902;late endosome membrane;0.0342102524763827!GO:0022890;inorganic cation transmembrane transporter activity;0.0342102524763827!GO:0007021;tubulin folding;0.0342102524763827!GO:0006350;transcription;0.0347673317453178!GO:0005784;translocon complex;0.0353412538720461!GO:0007030;Golgi organization and biogenesis;0.0355358268641715!GO:0065009;regulation of a molecular function;0.0357129587684527!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0357589052326634!GO:0008287;protein serine/threonine phosphatase complex;0.0361993841948099!GO:0006979;response to oxidative stress;0.0363122459763955!GO:0009081;branched chain family amino acid metabolic process;0.0366800453187707!GO:0003756;protein disulfide isomerase activity;0.037078550972576!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.037078550972576!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0378919501419868!GO:0004197;cysteine-type endopeptidase activity;0.0383983742197711!GO:0033559;unsaturated fatty acid metabolic process;0.0383983742197711!GO:0006636;unsaturated fatty acid biosynthetic process;0.0383983742197711!GO:0006739;NADP metabolic process;0.0390881839399498!GO:0030911;TPR domain binding;0.0393917935487558!GO:0032200;telomere organization and biogenesis;0.0395490409393784!GO:0000723;telomere maintenance;0.0395490409393784!GO:0003923;GPI-anchor transamidase activity;0.0395490409393784!GO:0016255;attachment of GPI anchor to protein;0.0395490409393784!GO:0042765;GPI-anchor transamidase complex;0.0395490409393784!GO:0060166;olfactory pit development;0.0395490409393784!GO:0021768;nucleus accumbens development;0.0395490409393784!GO:0002072;optic cup morphogenesis involved in camera-type eye development;0.0395490409393784!GO:0050811;GABA receptor binding;0.0396340012339299!GO:0006892;post-Golgi vesicle-mediated transport;0.0403690908562379!GO:0035035;histone acetyltransferase binding;0.0403690908562379!GO:0008383;manganese superoxide dismutase activity;0.0404300645245826!GO:0001315;age-dependent response to reactive oxygen species;0.0404300645245826!GO:0007346;regulation of progression through mitotic cell cycle;0.0411157963445999!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.041124155730023!GO:0004448;isocitrate dehydrogenase activity;0.0411984625696011!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0418935201910091!GO:0000228;nuclear chromosome;0.0423069138576303!GO:0006643;membrane lipid metabolic process;0.0434836059375683!GO:0032984;macromolecular complex disassembly;0.0450021121211949!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0450021121211949!GO:0010257;NADH dehydrogenase complex assembly;0.0450021121211949!GO:0033108;mitochondrial respiratory chain complex assembly;0.0450021121211949!GO:0045792;negative regulation of cell size;0.0452031489471256!GO:0043624;cellular protein complex disassembly;0.045329737989508!GO:0031123;RNA 3'-end processing;0.045465109137579!GO:0030503;regulation of cell redox homeostasis;0.0454868915784968!GO:0004518;nuclease activity;0.0458264493109762!GO:0044454;nuclear chromosome part;0.0459703847397984!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0463184607888996!GO:0007004;telomere maintenance via telomerase;0.0464689463758466!GO:0006904;vesicle docking during exocytosis;0.0464689463758466!GO:0022406;membrane docking;0.0465250039175802!GO:0048278;vesicle docking;0.0465250039175802!GO:0007017;microtubule-based process;0.0465250039175802!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0465250039175802!GO:0006519;amino acid and derivative metabolic process;0.0465818765586337!GO:0009451;RNA modification;0.0475128496842483!GO:0043433;negative regulation of transcription factor activity;0.0476683955049711!GO:0000159;protein phosphatase type 2A complex;0.0476683955049711!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0476683955049711!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0476683955049711!GO:0019206;nucleoside kinase activity;0.0477952897206694!GO:0016407;acetyltransferase activity;0.0477952897206694!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0479568686012544!GO:0042393;histone binding;0.0481218761459572!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0481243161149101!GO:0006950;response to stress;0.0482568976719386!GO:0004185;serine carboxypeptidase activity;0.0482568976719386!GO:0006807;nitrogen compound metabolic process;0.0483321298566256!GO:0044437;vacuolar part;0.0484539566872522!GO:0032507;maintenance of cellular protein localization;0.0484800571423074!GO:0042770;DNA damage response, signal transduction;0.0486936596355204!GO:0046966;thyroid hormone receptor binding;0.0490644883729862!GO:0030308;negative regulation of cell growth;0.0493564543737701!GO:0030508;thiol-disulfide exchange intermediate activity;0.0496254112611014 | |||
|sample_id=10856 | |sample_id=10856 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=mesothelium | |sample_tissue=mesothelium | ||
|top_motifs=bHLH_family:1.83514996867;HOX{A5,B5}:1.58362781535;GZF1:1.26147194293;TEAD1:1.20760922509;HSF1,2:1.16506423154;LMO2:1.12312772388;ZNF384:1.1217271027;AIRE:1.06091608843;XCPE1{core}:1.01592574859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.954866789291;TEF:0.858554019136;TOPORS:0.772013373012;PAX6:0.755415254397;POU1F1:0.712330415982;EP300:0.693763402898;NR3C1:0.670748046672;ADNP_IRX_SIX_ZHX:0.662733083085;ELK1,4_GABP{A,B1}:0.657166097656;PAX4:0.644117106719;E2F1..5:0.643489038946;TFAP2B:0.559056593587;EVI1:0.554678789293;TP53:0.531574334237;NFE2L1:0.527238781737;TLX1..3_NFIC{dimer}:0.519419094362;ARID5B:0.4955181904;ZEB1:0.486437353429;EBF1:0.45376051929;FOXM1:0.451276948367;STAT2,4,6:0.439889563846;LHX3,4:0.415550088054;ZNF423:0.404250690154;UFEwm:0.379290320955;RXR{A,B,G}:0.367185509583;SPZ1:0.357158356381;SNAI1..3:0.322456282055;HLF:0.318108461859;PAX1,9:0.302651484347;ZNF143:0.298725074217;MAZ:0.265706158123;HNF4A_NR2F1,2:0.259916050374;GLI1..3:0.254690865869;STAT1,3:0.24021279424;EN1,2:0.23815572277;ZBTB16:0.23559580016;ESR1:0.234066209815;RFX1:0.224316560843;HIF1A:0.218849882034;PRRX1,2:0.205063523591;HIC1:0.199071555398;SOX17:0.190067749432;GFI1B:0.184895416586;MTE{core}:0.183037686787;LEF1_TCF7_TCF7L1,2:0.158969631244;TFDP1:0.158264314851;PAX5:0.155483547716;NR6A1:0.148306694766;GTF2A1,2:0.145989079072;SMAD1..7,9:0.133486109922;MTF1:0.124974712805;SP1:0.121645359418;NKX6-1,2:0.118407781465;GFI1:0.113464905306;NRF1:0.102253204471;SREBF1,2:0.0976915841994;SOX2:0.0906987714527;REST:0.0852615132364;IRF7:0.0844715448407;ESRRA:0.0778122628943;ATF4:0.0775266070125;NKX3-2:0.0732915143289;IKZF1:0.0686810089592;NFY{A,B,C}:0.0629437909324;KLF4:0.0602928479021;PRDM1:0.0585159424107;TFAP2{A,C}:0.0482926938342;TAL1_TCF{3,4,12}:0.0371234047645;ONECUT1,2:0.0358383266148;PAX8:0.0350408332996;ZBTB6:0.0342990465229;GATA4:0.0286400842479;NKX3-1:0.0110088049255;GTF2I:0.00860806276193;TFCP2:0.00386010659258;MZF1:-0.0171936724841;TBP:-0.0254436296187;EGR1..3:-0.0370709960564;POU5F1:-0.0423065548584;HNF1A:-0.0529462064882;BACH2:-0.0636547234248;MAFB:-0.0669302699319;HES1:-0.0701085659648;CEBPA,B_DDIT3:-0.0843121154837;TLX2:-0.0845762611806;FOSL2:-0.0963190892463;FOXQ1:-0.101653014062;FOX{D1,D2}:-0.117038767489;IRF1,2:-0.119449448371;FOS_FOS{B,L1}_JUN{B,D}:-0.145659145122;DMAP1_NCOR{1,2}_SMARC:-0.149202066707;CDC5L:-0.152195280793;BREu{core}:-0.153759226574;ZNF148:-0.176883504825;RREB1:-0.193469981532;PPARG:-0.195564647674;MYBL2:-0.195698085156;MED-1{core}:-0.196211490916;NFATC1..3:-0.20077885698;HMX1:-0.201025749824;NFE2:-0.20489081933;FOXD3:-0.217705616109;HMGA1,2:-0.230538885955;PATZ1:-0.236868569772;ZIC1..3:-0.240662459209;GATA6:-0.261259303154;STAT5{A,B}:-0.271524832147;FOXP1:-0.29828038848;NFE2L2:-0.301335978124;NFKB1_REL_RELA:-0.306149394593;CDX1,2,4:-0.333010081352;PBX1:-0.334857966657;AR:-0.334910912905;IKZF2:-0.340981365948;NFIL3:-0.343525256278;OCT4_SOX2{dimer}:-0.344281759668;FOXL1:-0.357838222948;MYFfamily:-0.366529180174;ATF2:-0.406180776959;ATF6:-0.410043440242;YY1:-0.416171985042;GCM1,2:-0.432756122712;HOX{A4,D4}:-0.436232115075;FOX{I1,J2}:-0.437779951753;POU3F1..4:-0.446868502327;DBP:-0.446931769671;MEF2{A,B,C,D}:-0.454615811959;MYOD1:-0.458736485314;RUNX1..3:-0.468273044175;ZFP161:-0.469978828806;SPIB:-0.471152979239;RFX2..5_RFXANK_RFXAP:-0.491204839007;ELF1,2,4:-0.511726034909;FOX{F1,F2,J1}:-0.520691669612;RORA:-0.524865665699;NHLH1,2:-0.53639174351;PITX1..3:-0.53933975871;NANOG{mouse}:-0.539886767326;HBP1_HMGB_SSRP1_UBTF:-0.544975358007;MYB:-0.55057960158;ALX4:-0.550843535662;AHR_ARNT_ARNT2:-0.560726551018;CUX2:-0.564048257199;T:-0.572115590796;RXRA_VDR{dimer}:-0.58488262901;ETS1,2:-0.604496301086;RBPJ:-0.618352149182;SOX{8,9,10}:-0.634330272472;ALX1:-0.646285583651;TBX4,5:-0.657086678673;HAND1,2:-0.660145673271;SPI1:-0.663311014404;ZNF238:-0.667016614725;ATF5_CREB3:-0.671231922346;NKX2-3_NKX2-5:-0.672234778955;CRX:-0.677047447753;FOXN1:-0.685535082288;PAX2:-0.716612040848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.732665754197;POU2F1..3:-0.738828685354;NANOG:-0.749339801726;SRF:-0.756551421936;TFAP4:-0.775657537487;NR1H4:-0.791587316904;FOXP3:-0.796607196217;XBP1:-0.812869933755;BPTF:-0.823982228714;HOX{A6,A7,B6,B7}:-0.83407877149;FOXO1,3,4:-0.859243649636;PAX3,7:-0.864678639507;VSX1,2:-0.90894413886;SOX5:-0.914499820377;NKX2-2,8:-0.927053356146;CREB1:-0.955556561189;NFIX:-1.00460983252;NKX2-1,4:-1.01355919338;FOXA2:-1.0274476094;HOXA9_MEIS1:-1.03184800167;NR5A1,2:-1.06007623152;POU6F1:-1.09104837311;JUN:-1.16006784916;TGIF1:-1.18971100605;PDX1:-1.57387268234 | |top_motifs=bHLH_family:1.83514996867;HOX{A5,B5}:1.58362781535;GZF1:1.26147194293;TEAD1:1.20760922509;HSF1,2:1.16506423154;LMO2:1.12312772388;ZNF384:1.1217271027;AIRE:1.06091608843;XCPE1{core}:1.01592574859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.954866789291;TEF:0.858554019136;TOPORS:0.772013373012;PAX6:0.755415254397;POU1F1:0.712330415982;EP300:0.693763402898;NR3C1:0.670748046672;ADNP_IRX_SIX_ZHX:0.662733083085;ELK1,4_GABP{A,B1}:0.657166097656;PAX4:0.644117106719;E2F1..5:0.643489038946;TFAP2B:0.559056593587;EVI1:0.554678789293;TP53:0.531574334237;NFE2L1:0.527238781737;TLX1..3_NFIC{dimer}:0.519419094362;ARID5B:0.4955181904;ZEB1:0.486437353429;EBF1:0.45376051929;FOXM1:0.451276948367;STAT2,4,6:0.439889563846;LHX3,4:0.415550088054;ZNF423:0.404250690154;UFEwm:0.379290320955;RXR{A,B,G}:0.367185509583;SPZ1:0.357158356381;SNAI1..3:0.322456282055;HLF:0.318108461859;PAX1,9:0.302651484347;ZNF143:0.298725074217;MAZ:0.265706158123;HNF4A_NR2F1,2:0.259916050374;GLI1..3:0.254690865869;STAT1,3:0.24021279424;EN1,2:0.23815572277;ZBTB16:0.23559580016;ESR1:0.234066209815;RFX1:0.224316560843;HIF1A:0.218849882034;PRRX1,2:0.205063523591;HIC1:0.199071555398;SOX17:0.190067749432;GFI1B:0.184895416586;MTE{core}:0.183037686787;LEF1_TCF7_TCF7L1,2:0.158969631244;TFDP1:0.158264314851;PAX5:0.155483547716;NR6A1:0.148306694766;GTF2A1,2:0.145989079072;SMAD1..7,9:0.133486109922;MTF1:0.124974712805;SP1:0.121645359418;NKX6-1,2:0.118407781465;GFI1:0.113464905306;NRF1:0.102253204471;SREBF1,2:0.0976915841994;SOX2:0.0906987714527;REST:0.0852615132364;IRF7:0.0844715448407;ESRRA:0.0778122628943;ATF4:0.0775266070125;NKX3-2:0.0732915143289;IKZF1:0.0686810089592;NFY{A,B,C}:0.0629437909324;KLF4:0.0602928479021;PRDM1:0.0585159424107;TFAP2{A,C}:0.0482926938342;TAL1_TCF{3,4,12}:0.0371234047645;ONECUT1,2:0.0358383266148;PAX8:0.0350408332996;ZBTB6:0.0342990465229;GATA4:0.0286400842479;NKX3-1:0.0110088049255;GTF2I:0.00860806276193;TFCP2:0.00386010659258;MZF1:-0.0171936724841;TBP:-0.0254436296187;EGR1..3:-0.0370709960564;POU5F1:-0.0423065548584;HNF1A:-0.0529462064882;BACH2:-0.0636547234248;MAFB:-0.0669302699319;HES1:-0.0701085659648;CEBPA,B_DDIT3:-0.0843121154837;TLX2:-0.0845762611806;FOSL2:-0.0963190892463;FOXQ1:-0.101653014062;FOX{D1,D2}:-0.117038767489;IRF1,2:-0.119449448371;FOS_FOS{B,L1}_JUN{B,D}:-0.145659145122;DMAP1_NCOR{1,2}_SMARC:-0.149202066707;CDC5L:-0.152195280793;BREu{core}:-0.153759226574;ZNF148:-0.176883504825;RREB1:-0.193469981532;PPARG:-0.195564647674;MYBL2:-0.195698085156;MED-1{core}:-0.196211490916;NFATC1..3:-0.20077885698;HMX1:-0.201025749824;NFE2:-0.20489081933;FOXD3:-0.217705616109;HMGA1,2:-0.230538885955;PATZ1:-0.236868569772;ZIC1..3:-0.240662459209;GATA6:-0.261259303154;STAT5{A,B}:-0.271524832147;FOXP1:-0.29828038848;NFE2L2:-0.301335978124;NFKB1_REL_RELA:-0.306149394593;CDX1,2,4:-0.333010081352;PBX1:-0.334857966657;AR:-0.334910912905;IKZF2:-0.340981365948;NFIL3:-0.343525256278;OCT4_SOX2{dimer}:-0.344281759668;FOXL1:-0.357838222948;MYFfamily:-0.366529180174;ATF2:-0.406180776959;ATF6:-0.410043440242;YY1:-0.416171985042;GCM1,2:-0.432756122712;HOX{A4,D4}:-0.436232115075;FOX{I1,J2}:-0.437779951753;POU3F1..4:-0.446868502327;DBP:-0.446931769671;MEF2{A,B,C,D}:-0.454615811959;MYOD1:-0.458736485314;RUNX1..3:-0.468273044175;ZFP161:-0.469978828806;SPIB:-0.471152979239;RFX2..5_RFXANK_RFXAP:-0.491204839007;ELF1,2,4:-0.511726034909;FOX{F1,F2,J1}:-0.520691669612;RORA:-0.524865665699;NHLH1,2:-0.53639174351;PITX1..3:-0.53933975871;NANOG{mouse}:-0.539886767326;HBP1_HMGB_SSRP1_UBTF:-0.544975358007;MYB:-0.55057960158;ALX4:-0.550843535662;AHR_ARNT_ARNT2:-0.560726551018;CUX2:-0.564048257199;T:-0.572115590796;RXRA_VDR{dimer}:-0.58488262901;ETS1,2:-0.604496301086;RBPJ:-0.618352149182;SOX{8,9,10}:-0.634330272472;ALX1:-0.646285583651;TBX4,5:-0.657086678673;HAND1,2:-0.660145673271;SPI1:-0.663311014404;ZNF238:-0.667016614725;ATF5_CREB3:-0.671231922346;NKX2-3_NKX2-5:-0.672234778955;CRX:-0.677047447753;FOXN1:-0.685535082288;PAX2:-0.716612040848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.732665754197;POU2F1..3:-0.738828685354;NANOG:-0.749339801726;SRF:-0.756551421936;TFAP4:-0.775657537487;NR1H4:-0.791587316904;FOXP3:-0.796607196217;XBP1:-0.812869933755;BPTF:-0.823982228714;HOX{A6,A7,B6,B7}:-0.83407877149;FOXO1,3,4:-0.859243649636;PAX3,7:-0.864678639507;VSX1,2:-0.90894413886;SOX5:-0.914499820377;NKX2-2,8:-0.927053356146;CREB1:-0.955556561189;NFIX:-1.00460983252;NKX2-1,4:-1.01355919338;FOXA2:-1.0274476094;HOXA9_MEIS1:-1.03184800167;NR5A1,2:-1.06007623152;POU6F1:-1.09104837311;JUN:-1.16006784916;TGIF1:-1.18971100605;PDX1:-1.57387268234 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10856-111G1;search_select_hide=table117:FF:10856-111G1 | |||
}} | }} | ||
Latest revision as of 16:24, 3 June 2020
| Name: | mesothelioma cell line:Mero-95 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13073 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13073
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13073
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.191 |
| 10 | 10 | 0.0905 |
| 100 | 100 | 0.136 |
| 101 | 101 | 0.448 |
| 102 | 102 | 0.443 |
| 103 | 103 | 0.575 |
| 104 | 104 | 0.754 |
| 105 | 105 | 0.273 |
| 106 | 106 | 0.115 |
| 107 | 107 | 0.97 |
| 108 | 108 | 0.336 |
| 109 | 109 | 0.82 |
| 11 | 11 | 0.276 |
| 110 | 110 | 0.685 |
| 111 | 111 | 0.0213 |
| 112 | 112 | 0.118 |
| 113 | 113 | 0.0148 |
| 114 | 114 | 0.476 |
| 115 | 115 | 0.507 |
| 116 | 116 | 0.787 |
| 117 | 117 | 0.33 |
| 118 | 118 | 0.882 |
| 119 | 119 | 0.526 |
| 12 | 12 | 0.144 |
| 120 | 120 | 0.923 |
| 121 | 121 | 0.321 |
| 122 | 122 | 0.537 |
| 123 | 123 | 0.0806 |
| 124 | 124 | 0.131 |
| 125 | 125 | 0.322 |
| 126 | 126 | 0.248 |
| 127 | 127 | 0.664 |
| 128 | 128 | 0.023 |
| 129 | 129 | 0.608 |
| 13 | 13 | 0.649 |
| 130 | 130 | 0.903 |
| 131 | 131 | 0.576 |
| 132 | 132 | 0.566 |
| 133 | 133 | 0.438 |
| 134 | 134 | 0.0677 |
| 135 | 135 | 0.0115 |
| 136 | 136 | 0.161 |
| 137 | 137 | 0.127 |
| 138 | 138 | 0.67 |
| 139 | 139 | 0.00467 |
| 14 | 14 | 0.552 |
| 140 | 140 | 0.845 |
| 141 | 141 | 0.13 |
| 142 | 142 | 0.973 |
| 143 | 143 | 0.0537 |
| 144 | 144 | 0.936 |
| 145 | 145 | 0.00869 |
| 146 | 146 | 0.653 |
| 147 | 147 | 0.618 |
| 148 | 148 | 0.422 |
| 149 | 149 | 0.816 |
| 15 | 15 | 0.409 |
| 150 | 150 | 0.267 |
| 151 | 151 | 0.909 |
| 152 | 152 | 0.024 |
| 153 | 153 | 0.368 |
| 154 | 154 | 0.988 |
| 155 | 155 | 0.311 |
| 156 | 156 | 0.187 |
| 157 | 157 | 0.7 |
| 158 | 158 | 0.0274 |
| 159 | 159 | 0.193 |
| 16 | 16 | 0.778 |
| 160 | 160 | 0.63 |
| 161 | 161 | 0.887 |
| 162 | 162 | 0.465 |
| 163 | 163 | 0.141 |
| 164 | 164 | 0.0627 |
| 165 | 165 | 0.23 |
| 166 | 166 | 0.572 |
| 167 | 167 | 0.472 |
| 168 | 168 | 0.0891 |
| 169 | 169 | 0.451 |
| 17 | 17 | 0.507 |
| 18 | 18 | 0.297 |
| 19 | 19 | 0.163 |
| 2 | 2 | 0.801 |
| 20 | 20 | 0.804 |
| 21 | 21 | 0.688 |
| 22 | 22 | 0.979 |
| 23 | 23 | 0.163 |
| 24 | 24 | 0.68 |
| 25 | 25 | 0.567 |
| 26 | 26 | 0.379 |
| 27 | 27 | 0.886 |
| 28 | 28 | 0.784 |
| 29 | 29 | 0.256 |
| 3 | 3 | 0.197 |
| 30 | 30 | 0.657 |
| 31 | 31 | 0.85 |
| 32 | 32 | 0.337 |
| 33 | 33 | 0.967 |
| 34 | 34 | 0.769 |
| 35 | 35 | 0.0826 |
| 36 | 36 | 0.312 |
| 37 | 37 | 0.574 |
| 38 | 38 | 0.689 |
| 39 | 39 | 0.695 |
| 4 | 4 | 0.25 |
| 40 | 40 | 0.485 |
| 41 | 41 | 8.41784e-4 |
| 42 | 42 | 0.402 |
| 43 | 43 | 0.0296 |
| 44 | 44 | 0.979 |
| 45 | 45 | 0.557 |
| 46 | 46 | 0.252 |
| 47 | 47 | 0.868 |
| 48 | 48 | 1 |
| 49 | 49 | 0.011 |
| 5 | 5 | 0.0574 |
| 50 | 50 | 0.764 |
| 51 | 51 | 0.904 |
| 52 | 52 | 0.839 |
| 53 | 53 | 0.531 |
| 54 | 54 | 0.969 |
| 55 | 55 | 0.321 |
| 56 | 56 | 0.978 |
| 57 | 57 | 0.868 |
| 58 | 58 | 0.109 |
| 59 | 59 | 0.677 |
| 6 | 6 | 0.412 |
| 60 | 60 | 0.173 |
| 61 | 61 | 0.867 |
| 62 | 62 | 0.0482 |
| 63 | 63 | 0.525 |
| 64 | 64 | 0.385 |
| 65 | 65 | 0.232 |
| 66 | 66 | 0.639 |
| 67 | 67 | 0.167 |
| 68 | 68 | 0.947 |
| 69 | 69 | 0.686 |
| 7 | 7 | 0.387 |
| 70 | 70 | 0.101 |
| 71 | 71 | 0.862 |
| 72 | 72 | 0.387 |
| 73 | 73 | 0.202 |
| 74 | 74 | 0.692 |
| 75 | 75 | 0.419 |
| 76 | 76 | 0.487 |
| 77 | 77 | 0.636 |
| 78 | 78 | 0.238 |
| 79 | 79 | 0.574 |
| 8 | 8 | 0.81 |
| 80 | 80 | 0.0271 |
| 81 | 81 | 0.264 |
| 82 | 82 | 0.458 |
| 83 | 83 | 0.999 |
| 84 | 84 | 0.261 |
| 85 | 85 | 0.0439 |
| 86 | 86 | 0.0747 |
| 87 | 87 | 0.0811 |
| 88 | 88 | 0.26 |
| 89 | 89 | 0.996 |
| 9 | 9 | 0.136 |
| 90 | 90 | 0.0113 |
| 91 | 91 | 0.114 |
| 92 | 92 | 0.0376 |
| 93 | 93 | 0.897 |
| 94 | 94 | 0.304 |
| 95 | 95 | 0.414 |
| 96 | 96 | 0.0351 |
| 97 | 97 | 0.73 |
| 98 | 98 | 0.226 |
| 99 | 99 | 0.0083 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13073
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
