FF:11780-124A7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005426 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008060;DRR008932;DRZ000357;DRZ001742;DRZ011707;DRZ013092 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624,CL:0000815,CL:0000898,CL:0000792,CL:0002677 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001 | |||
|comment=Previously: CD4-positiveCD25-positiveCD45RA+ memory regulatory T cells, donor1. TODO: full classification | |comment=Previously: CD4-positiveCD25-positiveCD45RA+ memory regulatory T cells, donor1. TODO: full classification | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD4%252bCD25%252bCD45RA%252b%2520naive%2520regulatory%2520T%2520cells%252c%2520donor1.CNhs13238.11780-124A7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11780-124A7 | |id=FF:11780-124A7 | ||
|is_a=CL:0002677;;EFO:0002091;;FF:0000002;;FF:0000210 | |is_a=CL:0002677;;EFO:0002091;;FF:0000002;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs13238 | |||
|library_id_phase_based=2:CNhs13238 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11780 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11780 | |||
|name=CD4+CD25+CD45RA+ naive regulatory T cells, donor1 | |name=CD4+CD25+CD45RA+ naive regulatory T cells, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13238,LSID1006,release012,COMPLETED | |profile_hcage=CNhs13238,LSID1006,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=124 | |rna_box=124 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=0.9014 | |rna_weight_ug=0.9014 | ||
|sample_age=25 | |sample_age=25 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.19718615211081e-233!GO:0043227;membrane-bound organelle;2.37366393863356e-210!GO:0043231;intracellular membrane-bound organelle;5.20798910570098e-210!GO:0043226;organelle;9.75957363704467e-195!GO:0043229;intracellular organelle;4.51541837409794e-194!GO:0005737;cytoplasm;2.95843133798886e-125!GO:0005634;nucleus;4.57754716478243e-118!GO:0044422;organelle part;5.58770573200981e-115!GO:0044446;intracellular organelle part;2.93198744337644e-113!GO:0043170;macromolecule metabolic process;2.53900457775435e-105!GO:0044237;cellular metabolic process;7.13165571827657e-104!GO:0044238;primary metabolic process;3.40749323558007e-99!GO:0032991;macromolecular complex;5.80718993236546e-95!GO:0030529;ribonucleoprotein complex;3.94407744840877e-93!GO:0044444;cytoplasmic part;1.43864044683053e-86!GO:0003723;RNA binding;3.97908136849499e-83!GO:0044428;nuclear part;4.20076197094685e-82!GO:0043283;biopolymer metabolic process;1.03236393677219e-76!GO:0010467;gene expression;5.58890769318584e-73!GO:0043233;organelle lumen;1.12094689623262e-70!GO:0031974;membrane-enclosed lumen;1.12094689623262e-70!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.24761264779351e-66!GO:0006396;RNA processing;1.22061062653177e-58!GO:0005739;mitochondrion;2.3187999302419e-57!GO:0003676;nucleic acid binding;2.05098492525232e-53!GO:0006412;translation;7.69888441748774e-53!GO:0005840;ribosome;6.69746383913766e-52!GO:0031981;nuclear lumen;7.68093724907063e-51!GO:0016071;mRNA metabolic process;2.08896600205143e-47!GO:0003735;structural constituent of ribosome;9.37177505293916e-45!GO:0043234;protein complex;1.7151521173279e-44!GO:0019538;protein metabolic process;3.03668899078947e-44!GO:0044267;cellular protein metabolic process;2.2635353849781e-43!GO:0033036;macromolecule localization;3.01564209798579e-43!GO:0005515;protein binding;4.93659577581337e-43!GO:0016070;RNA metabolic process;1.33276664050463e-42!GO:0044260;cellular macromolecule metabolic process;2.1024492495812e-42!GO:0015031;protein transport;6.06169696230859e-42!GO:0008380;RNA splicing;1.10319016708868e-41!GO:0044429;mitochondrial part;9.14723493619785e-41!GO:0006397;mRNA processing;4.38306985320958e-40!GO:0033279;ribosomal subunit;5.18709511885128e-40!GO:0045184;establishment of protein localization;8.07995258008907e-40!GO:0008104;protein localization;1.8044483171054e-39!GO:0009059;macromolecule biosynthetic process;2.59468496988008e-39!GO:0031967;organelle envelope;4.28684583856682e-39!GO:0031975;envelope;9.46351924708739e-39!GO:0031090;organelle membrane;1.47188759026224e-36!GO:0006259;DNA metabolic process;2.65342203608976e-32!GO:0005681;spliceosome;4.08351703535935e-32!GO:0005829;cytosol;4.37172013375093e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.42052067436647e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.42909562145993e-31!GO:0005654;nucleoplasm;2.15087312931305e-31!GO:0044249;cellular biosynthetic process;1.92859723217943e-30!GO:0009058;biosynthetic process;1.76628769612521e-29!GO:0046907;intracellular transport;5.53107065721046e-29!GO:0065003;macromolecular complex assembly;3.24446790684393e-28!GO:0006886;intracellular protein transport;4.60869505936217e-28!GO:0016043;cellular component organization and biogenesis;1.03667889743226e-26!GO:0044445;cytosolic part;1.26913425601e-26!GO:0005740;mitochondrial envelope;5.17965865875889e-26!GO:0006512;ubiquitin cycle;9.5597875777463e-26!GO:0044451;nucleoplasm part;2.64872256429702e-25!GO:0031966;mitochondrial membrane;5.09177497794445e-25!GO:0019866;organelle inner membrane;6.47596759746332e-25!GO:0022607;cellular component assembly;1.2882106063701e-24!GO:0006996;organelle organization and biogenesis;4.98237523359943e-23!GO:0000166;nucleotide binding;6.67449503586108e-23!GO:0005743;mitochondrial inner membrane;1.69350481402279e-22!GO:0015935;small ribosomal subunit;1.98783028132397e-21!GO:0005730;nucleolus;5.00238398547717e-21!GO:0022618;protein-RNA complex assembly;4.8603580052584e-20!GO:0051641;cellular localization;7.04048088883685e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.37314399238631e-20!GO:0016462;pyrophosphatase activity;8.38051635801761e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.0613483598185e-19!GO:0015934;large ribosomal subunit;1.11913945777088e-19!GO:0017111;nucleoside-triphosphatase activity;1.50715682535131e-19!GO:0051649;establishment of cellular localization;1.74040093725521e-19!GO:0006119;oxidative phosphorylation;2.55535469065412e-19!GO:0016874;ligase activity;5.2029041335461e-19!GO:0044455;mitochondrial membrane part;9.20331220765929e-19!GO:0044265;cellular macromolecule catabolic process;9.59522966899336e-19!GO:0043228;non-membrane-bound organelle;9.59522966899336e-19!GO:0043232;intracellular non-membrane-bound organelle;9.59522966899336e-19!GO:0016604;nuclear body;2.70752835624798e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.87994473730214e-18!GO:0019941;modification-dependent protein catabolic process;5.23460123279278e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.23460123279278e-18!GO:0031980;mitochondrial lumen;5.23460123279278e-18!GO:0005759;mitochondrial matrix;5.23460123279278e-18!GO:0044257;cellular protein catabolic process;7.71983409475073e-18!GO:0006511;ubiquitin-dependent protein catabolic process;8.1743844155192e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;8.62498940288529e-18!GO:0043285;biopolymer catabolic process;1.76378598912561e-17!GO:0043412;biopolymer modification;1.85075545646321e-17!GO:0008135;translation factor activity, nucleic acid binding;2.18489384453577e-17!GO:0006323;DNA packaging;4.34554476957398e-17!GO:0006605;protein targeting;4.43436468643537e-17!GO:0051276;chromosome organization and biogenesis;7.33691619087219e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.45414266108253e-17!GO:0012501;programmed cell death;8.32639068102292e-17!GO:0006915;apoptosis;8.57380483022264e-17!GO:0008134;transcription factor binding;1.18110900128977e-16!GO:0008219;cell death;5.10277827931543e-16!GO:0016265;death;5.10277827931543e-16!GO:0006974;response to DNA damage stimulus;5.39390800287988e-16!GO:0006913;nucleocytoplasmic transport;1.15283041342921e-15!GO:0050794;regulation of cellular process;1.50586872122802e-15!GO:0051169;nuclear transport;1.979348086764e-15!GO:0016607;nuclear speck;1.97970885173583e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.35009612831766e-15!GO:0032553;ribonucleotide binding;2.43858950156162e-15!GO:0032555;purine ribonucleotide binding;2.43858950156162e-15!GO:0006457;protein folding;2.58254424160145e-15!GO:0009057;macromolecule catabolic process;2.87751799352427e-15!GO:0042623;ATPase activity, coupled;4.04118835062019e-15!GO:0006464;protein modification process;4.52186620342838e-15!GO:0005746;mitochondrial respiratory chain;5.01763238342835e-15!GO:0016887;ATPase activity;6.30929454999375e-15!GO:0019222;regulation of metabolic process;6.76001078744568e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.35432693953535e-15!GO:0000375;RNA splicing, via transesterification reactions;7.35432693953535e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.35432693953535e-15!GO:0017076;purine nucleotide binding;1.27337159444745e-14!GO:0043687;post-translational protein modification;2.74981077447403e-14!GO:0006281;DNA repair;4.89396272888886e-14!GO:0031965;nuclear membrane;1.59434416602965e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.62515809662134e-13!GO:0003954;NADH dehydrogenase activity;1.62515809662134e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.62515809662134e-13!GO:0005635;nuclear envelope;1.64995370616101e-13!GO:0030163;protein catabolic process;2.20006819698792e-13!GO:0031323;regulation of cellular metabolic process;2.22633768750465e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.42623005857545e-13!GO:0005694;chromosome;3.0226468366293e-13!GO:0008270;zinc ion binding;3.08493799631293e-13!GO:0006350;transcription;4.76422107827804e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.80805763660392e-13!GO:0042254;ribosome biogenesis and assembly;5.10616839788787e-13!GO:0003743;translation initiation factor activity;6.29221079076662e-13!GO:0004386;helicase activity;7.22132865088607e-13!GO:0006413;translational initiation;1.12178990929442e-12!GO:0012505;endomembrane system;1.45528571299322e-12!GO:0005524;ATP binding;1.50461781340745e-12!GO:0005761;mitochondrial ribosome;1.92956472487151e-12!GO:0000313;organellar ribosome;1.92956472487151e-12!GO:0044453;nuclear membrane part;2.32729945013332e-12!GO:0016568;chromatin modification;3.43027052194153e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.96237592718422e-12!GO:0042773;ATP synthesis coupled electron transport;3.96237592718422e-12!GO:0065004;protein-DNA complex assembly;4.86092994723642e-12!GO:0044248;cellular catabolic process;5.23939442167995e-12!GO:0032559;adenyl ribonucleotide binding;5.51036629875601e-12!GO:0008026;ATP-dependent helicase activity;6.33011512605712e-12!GO:0017038;protein import;9.73333752380272e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.0457624469606e-11!GO:0045271;respiratory chain complex I;1.0457624469606e-11!GO:0005747;mitochondrial respiratory chain complex I;1.0457624469606e-11!GO:0010468;regulation of gene expression;1.2220495863124e-11!GO:0007049;cell cycle;1.35594646646699e-11!GO:0006333;chromatin assembly or disassembly;1.43350931276075e-11!GO:0044427;chromosomal part;2.65771245842853e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.93527021554725e-11!GO:0030554;adenyl nucleotide binding;3.22625999360556e-11!GO:0042981;regulation of apoptosis;3.71723612644673e-11!GO:0006446;regulation of translational initiation;3.77237610042002e-11!GO:0005643;nuclear pore;3.96160999304375e-11!GO:0051082;unfolded protein binding;4.04574995613532e-11!GO:0043067;regulation of programmed cell death;5.5698681676839e-11!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.2359399260782e-11!GO:0006403;RNA localization;6.5380080656045e-11!GO:0050657;nucleic acid transport;6.74979034699504e-11!GO:0051236;establishment of RNA localization;6.74979034699504e-11!GO:0050658;RNA transport;6.74979034699504e-11!GO:0032774;RNA biosynthetic process;1.03788345295105e-10!GO:0006351;transcription, DNA-dependent;1.43387046470136e-10!GO:0008639;small protein conjugating enzyme activity;1.50258760834231e-10!GO:0003712;transcription cofactor activity;1.58455876008944e-10!GO:0004842;ubiquitin-protein ligase activity;1.98090201497002e-10!GO:0019787;small conjugating protein ligase activity;4.66439544496094e-10!GO:0050789;regulation of biological process;5.55618514588307e-10!GO:0046914;transition metal ion binding;7.48981451409952e-10!GO:0016072;rRNA metabolic process;7.78268323387625e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.07917221866245e-09!GO:0009719;response to endogenous stimulus;1.10396292412479e-09!GO:0051186;cofactor metabolic process;1.15748943289863e-09!GO:0006364;rRNA processing;1.19394645868996e-09!GO:0045449;regulation of transcription;1.47309775752803e-09!GO:0000785;chromatin;1.68189958516554e-09!GO:0048193;Golgi vesicle transport;1.73812391962327e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.7850620989931e-09!GO:0051028;mRNA transport;3.35292352403159e-09!GO:0006399;tRNA metabolic process;3.52687424474762e-09!GO:0065002;intracellular protein transport across a membrane;4.05729245044306e-09!GO:0046930;pore complex;4.72781411155578e-09!GO:0048770;pigment granule;5.48618566881675e-09!GO:0042470;melanosome;5.48618566881675e-09!GO:0043566;structure-specific DNA binding;5.58421242774191e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.99440950645113e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.7901595155737e-09!GO:0022402;cell cycle process;1.17310304260425e-08!GO:0006355;regulation of transcription, DNA-dependent;1.23677569557381e-08!GO:0019829;cation-transporting ATPase activity;1.54517568275278e-08!GO:0006334;nucleosome assembly;2.06994438510001e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.21928084120605e-08!GO:0003677;DNA binding;2.33217179677316e-08!GO:0009259;ribonucleotide metabolic process;2.78765789909326e-08!GO:0051726;regulation of cell cycle;3.00480737479157e-08!GO:0031497;chromatin assembly;3.23701421438209e-08!GO:0003713;transcription coactivator activity;3.97278412167128e-08!GO:0009260;ribonucleotide biosynthetic process;3.99517931799518e-08!GO:0000074;regulation of progression through cell cycle;4.42638468650776e-08!GO:0003697;single-stranded DNA binding;5.19617643443014e-08!GO:0051170;nuclear import;6.05430094868688e-08!GO:0016881;acid-amino acid ligase activity;6.16217674712297e-08!GO:0006164;purine nucleotide biosynthetic process;1.01467338533498e-07!GO:0006606;protein import into nucleus;1.12096703028495e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.12096703028495e-07!GO:0008565;protein transporter activity;1.1975608513792e-07!GO:0006732;coenzyme metabolic process;1.35588361583908e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.51235499960055e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.63219606833131e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.64740278630333e-07!GO:0009060;aerobic respiration;1.70387149545296e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.99010948924122e-07!GO:0006163;purine nucleotide metabolic process;2.41933884086892e-07!GO:0016787;hydrolase activity;2.44082860385788e-07!GO:0000151;ubiquitin ligase complex;3.12918096160356e-07!GO:0006366;transcription from RNA polymerase II promoter;3.69137201311014e-07!GO:0016779;nucleotidyltransferase activity;3.87167412847553e-07!GO:0009150;purine ribonucleotide metabolic process;3.94749969059398e-07!GO:0005794;Golgi apparatus;4.00023531549091e-07!GO:0004298;threonine endopeptidase activity;7.13660590937952e-07!GO:0006793;phosphorus metabolic process;7.14970380904314e-07!GO:0006796;phosphate metabolic process;7.14970380904314e-07!GO:0015986;ATP synthesis coupled proton transport;7.46965720780074e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.46965720780074e-07!GO:0051168;nuclear export;7.60564329308561e-07!GO:0032446;protein modification by small protein conjugation;8.37190792933232e-07!GO:0000245;spliceosome assembly;9.23048255205363e-07!GO:0016563;transcription activator activity;1.16881755343638e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.26343135900075e-06!GO:0045333;cellular respiration;1.32766725923905e-06!GO:0006260;DNA replication;1.48748679298967e-06!GO:0005768;endosome;1.6588330621903e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.67785793924384e-06!GO:0007005;mitochondrion organization and biogenesis;1.95428050567559e-06!GO:0016740;transferase activity;1.97402143236574e-06!GO:0043069;negative regulation of programmed cell death;2.04077772465293e-06!GO:0016567;protein ubiquitination;2.04077772465293e-06!GO:0044432;endoplasmic reticulum part;2.08792567870916e-06!GO:0016564;transcription repressor activity;2.1119838802521e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.21627720985566e-06!GO:0003724;RNA helicase activity;2.21627720985566e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.45681734982793e-06!GO:0045786;negative regulation of progression through cell cycle;2.8451633524937e-06!GO:0016192;vesicle-mediated transport;2.84622510996914e-06!GO:0043066;negative regulation of apoptosis;2.92182871731973e-06!GO:0006916;anti-apoptosis;3.40707388989507e-06!GO:0006754;ATP biosynthetic process;3.5284242789962e-06!GO:0006753;nucleoside phosphate metabolic process;3.5284242789962e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.5284242789962e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.5284242789962e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.74028263646639e-06!GO:0015399;primary active transmembrane transporter activity;3.74028263646639e-06!GO:0051188;cofactor biosynthetic process;3.80989676284138e-06!GO:0009056;catabolic process;4.18313383723318e-06!GO:0045259;proton-transporting ATP synthase complex;4.2014370713814e-06!GO:0007243;protein kinase cascade;4.20317759489042e-06!GO:0048523;negative regulation of cellular process;4.22930117591679e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.13944786295042e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.46393922481574e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.46393922481574e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.60143477517143e-06!GO:0004812;aminoacyl-tRNA ligase activity;5.60143477517143e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.60143477517143e-06!GO:0009141;nucleoside triphosphate metabolic process;5.94384543925523e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.03006770288419e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.0489326872735e-06!GO:0016310;phosphorylation;6.35599524434362e-06!GO:0065009;regulation of a molecular function;6.35599524434362e-06!GO:0009055;electron carrier activity;6.97313342917818e-06!GO:0065007;biological regulation;6.99832331981127e-06!GO:0046034;ATP metabolic process;7.66892504708165e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.67341833479401e-06!GO:0009144;purine nucleoside triphosphate metabolic process;7.67341833479401e-06!GO:0031324;negative regulation of cellular metabolic process;8.16527017860854e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.00003167582552e-05!GO:0005783;endoplasmic reticulum;1.03087588856528e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.10690921289757e-05!GO:0006401;RNA catabolic process;1.11529968393044e-05!GO:0019899;enzyme binding;1.21105148618121e-05!GO:0006099;tricarboxylic acid cycle;1.23422609289057e-05!GO:0046356;acetyl-CoA catabolic process;1.23422609289057e-05!GO:0051246;regulation of protein metabolic process;1.2652320702913e-05!GO:0043038;amino acid activation;1.28447893916524e-05!GO:0006418;tRNA aminoacylation for protein translation;1.28447893916524e-05!GO:0043039;tRNA aminoacylation;1.28447893916524e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.44907516678138e-05!GO:0005789;endoplasmic reticulum membrane;1.6341192786993e-05!GO:0006084;acetyl-CoA metabolic process;1.72712371217741e-05!GO:0006613;cotranslational protein targeting to membrane;2.57320984081273e-05!GO:0008186;RNA-dependent ATPase activity;3.29241943759102e-05!GO:0006402;mRNA catabolic process;3.45385547177915e-05!GO:0009108;coenzyme biosynthetic process;3.69319950749302e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.42592909465456e-05!GO:0005525;GTP binding;4.61054660563732e-05!GO:0003899;DNA-directed RNA polymerase activity;5.33764015034016e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.48392102926781e-05!GO:0043492;ATPase activity, coupled to movement of substances;5.67147871970024e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;5.80789045507925e-05!GO:0016363;nuclear matrix;7.12198941945839e-05!GO:0000786;nucleosome;7.75714314811718e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;7.76970144922237e-05!GO:0003690;double-stranded DNA binding;8.379793152484e-05!GO:0009109;coenzyme catabolic process;8.71596952886565e-05!GO:0048519;negative regulation of biological process;9.50283211397005e-05!GO:0005793;ER-Golgi intermediate compartment;9.97043002144074e-05!GO:0004004;ATP-dependent RNA helicase activity;0.000106256574918859!GO:0008168;methyltransferase activity;0.000106256574918859!GO:0030120;vesicle coat;0.000106256574918859!GO:0030662;coated vesicle membrane;0.000106256574918859!GO:0016741;transferase activity, transferring one-carbon groups;0.000111843274711778!GO:0005762;mitochondrial large ribosomal subunit;0.000111843274711778!GO:0000315;organellar large ribosomal subunit;0.000111843274711778!GO:0006261;DNA-dependent DNA replication;0.000115344222504132!GO:0006917;induction of apoptosis;0.000126800371971273!GO:0016481;negative regulation of transcription;0.000131060235888971!GO:0016251;general RNA polymerase II transcription factor activity;0.00013456019235903!GO:0043623;cellular protein complex assembly;0.000135012266004257!GO:0003924;GTPase activity;0.000142766803802762!GO:0009892;negative regulation of metabolic process;0.000165549829678567!GO:0006352;transcription initiation;0.000168771357927703!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000174906040204267!GO:0006461;protein complex assembly;0.00017965772537434!GO:0012502;induction of programmed cell death;0.00018062304779905!GO:0008234;cysteine-type peptidase activity;0.000185321310833963!GO:0008033;tRNA processing;0.000192921634202413!GO:0043065;positive regulation of apoptosis;0.00020270141157236!GO:0003729;mRNA binding;0.000203245225471302!GO:0006752;group transfer coenzyme metabolic process;0.00020695673386418!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000210219616604842!GO:0000314;organellar small ribosomal subunit;0.00022400727176647!GO:0005763;mitochondrial small ribosomal subunit;0.00022400727176647!GO:0051187;cofactor catabolic process;0.000226475592581786!GO:0006417;regulation of translation;0.00024473865758034!GO:0048475;coated membrane;0.000254358469881721!GO:0030117;membrane coat;0.000254358469881721!GO:0005813;centrosome;0.000273349476354517!GO:0043021;ribonucleoprotein binding;0.00027659309167257!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00027868105186669!GO:0043681;protein import into mitochondrion;0.000283277924766779!GO:0043068;positive regulation of programmed cell death;0.00029138653196845!GO:0006612;protein targeting to membrane;0.000306809740287542!GO:0051427;hormone receptor binding;0.000318523402848406!GO:0005769;early endosome;0.000329121341712428!GO:0008654;phospholipid biosynthetic process;0.000371019138762244!GO:0000278;mitotic cell cycle;0.000374222575810331!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000400777444674275!GO:0008632;apoptotic program;0.000410491459516761!GO:0005770;late endosome;0.000445189208350745!GO:0004527;exonuclease activity;0.000458892503108313!GO:0007242;intracellular signaling cascade;0.000496765879207378!GO:0005885;Arp2/3 protein complex;0.000507742089825996!GO:0030384;phosphoinositide metabolic process;0.000538335659595616!GO:0032561;guanyl ribonucleotide binding;0.000539100604028929!GO:0019001;guanyl nucleotide binding;0.000539100604028929!GO:0035257;nuclear hormone receptor binding;0.000574921502471324!GO:0046489;phosphoinositide biosynthetic process;0.000593302828692952!GO:0006611;protein export from nucleus;0.000602089695927945!GO:0060090;molecular adaptor activity;0.000616329729914184!GO:0006310;DNA recombination;0.000620185995196464!GO:0031326;regulation of cellular biosynthetic process;0.00068364980098637!GO:0006383;transcription from RNA polymerase III promoter;0.000685294047573634!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000716716024493048!GO:0044431;Golgi apparatus part;0.000732612398006072!GO:0031072;heat shock protein binding;0.000732612398006072!GO:0044452;nucleolar part;0.000756074515896611!GO:0006891;intra-Golgi vesicle-mediated transport;0.0008351856442766!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000841937588805773!GO:0005667;transcription factor complex;0.000894904854072035!GO:0004674;protein serine/threonine kinase activity;0.000902016784477009!GO:0004518;nuclease activity;0.000903110779412212!GO:0016197;endosome transport;0.000991298245321148!GO:0044440;endosomal part;0.00106991327096656!GO:0010008;endosome membrane;0.00106991327096656!GO:0019843;rRNA binding;0.00107298220665058!GO:0051087;chaperone binding;0.00112504048672075!GO:0005815;microtubule organizing center;0.00112957456981978!GO:0007264;small GTPase mediated signal transduction;0.00119190041943037!GO:0006414;translational elongation;0.00122069413850504!GO:0003714;transcription corepressor activity;0.00125646708805871!GO:0006405;RNA export from nucleus;0.00146467755825283!GO:0006607;NLS-bearing substrate import into nucleus;0.00177093665353923!GO:0006338;chromatin remodeling;0.00177724798409543!GO:0051539;4 iron, 4 sulfur cluster binding;0.0017782151277802!GO:0005684;U2-dependent spliceosome;0.00189477591057317!GO:0019783;small conjugating protein-specific protease activity;0.00215670656235143!GO:0003746;translation elongation factor activity;0.00217979452232321!GO:0046474;glycerophospholipid biosynthetic process;0.00217979452232321!GO:0009117;nucleotide metabolic process;0.00221064731111931!GO:0006818;hydrogen transport;0.00222400901065731!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00223455681672645!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00223455681672645!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00223455681672645!GO:0007006;mitochondrial membrane organization and biogenesis;0.00230552025685234!GO:0015992;proton transport;0.00238933909073225!GO:0032259;methylation;0.00246715412996696!GO:0031625;ubiquitin protein ligase binding;0.00246715412996696!GO:0003678;DNA helicase activity;0.00254546851571517!GO:0005773;vacuole;0.0027203285209879!GO:0009889;regulation of biosynthetic process;0.00273347192549456!GO:0050790;regulation of catalytic activity;0.00283083388081053!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0029112171052429!GO:0004532;exoribonuclease activity;0.0029749927695495!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0029749927695495!GO:0004843;ubiquitin-specific protease activity;0.00303095796357806!GO:0022890;inorganic cation transmembrane transporter activity;0.00310334798416787!GO:0015631;tubulin binding;0.00314057434463811!GO:0046966;thyroid hormone receptor binding;0.00317912029446901!GO:0048500;signal recognition particle;0.00327439505328872!GO:0006650;glycerophospholipid metabolic process;0.00342742088859103!GO:0051252;regulation of RNA metabolic process;0.00349060980247746!GO:0019867;outer membrane;0.00352528767498489!GO:0005637;nuclear inner membrane;0.00369478845020379!GO:0007265;Ras protein signal transduction;0.00369813262322203!GO:0016584;nucleosome positioning;0.00373144556006219!GO:0006626;protein targeting to mitochondrion;0.00378074603807387!GO:0006839;mitochondrial transport;0.00389523831558452!GO:0005741;mitochondrial outer membrane;0.0040422526692243!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00410889997184255!GO:0008022;protein C-terminus binding;0.00418820610716769!GO:0048471;perinuclear region of cytoplasm;0.00436089933605249!GO:0045892;negative regulation of transcription, DNA-dependent;0.00447515817960774!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00449035051915512!GO:0031968;organelle outer membrane;0.00461600426546831!GO:0003711;transcription elongation regulator activity;0.0047301155532795!GO:0006289;nucleotide-excision repair;0.00481779251044853!GO:0005669;transcription factor TFIID complex;0.00491576754471532!GO:0004221;ubiquitin thiolesterase activity;0.00497065041801226!GO:0008312;7S RNA binding;0.0051137911715743!GO:0007050;cell cycle arrest;0.00524917135470202!GO:0042101;T cell receptor complex;0.00525030879338461!GO:0016859;cis-trans isomerase activity;0.00528924562970961!GO:0005657;replication fork;0.00530538747850182!GO:0033116;ER-Golgi intermediate compartment membrane;0.00530649580002951!GO:0043488;regulation of mRNA stability;0.00542703487466581!GO:0043487;regulation of RNA stability;0.00542703487466581!GO:0051789;response to protein stimulus;0.00559226873524679!GO:0006986;response to unfolded protein;0.00559226873524679!GO:0043414;biopolymer methylation;0.00559964346073426!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00570807056782397!GO:0008047;enzyme activator activity;0.00583020348839749!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0058812465883126!GO:0015002;heme-copper terminal oxidase activity;0.0058812465883126!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0058812465883126!GO:0004129;cytochrome-c oxidase activity;0.0058812465883126!GO:0051059;NF-kappaB binding;0.00609940244591595!GO:0000139;Golgi membrane;0.00610666231253664!GO:0005048;signal sequence binding;0.0061641250851691!GO:0008408;3'-5' exonuclease activity;0.00617307391138561!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00628929991638062!GO:0045047;protein targeting to ER;0.00628929991638062!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00631724249473762!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00631724249473762!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00672149577081555!GO:0048487;beta-tubulin binding;0.00691641553112852!GO:0001667;ameboidal cell migration;0.00708047216560804!GO:0032027;myosin light chain binding;0.00708047216560804!GO:0030518;steroid hormone receptor signaling pathway;0.00730016904918637!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00742869264214999!GO:0005083;small GTPase regulator activity;0.00777173397441938!GO:0000323;lytic vacuole;0.00790865629756345!GO:0005764;lysosome;0.00790865629756345!GO:0006302;double-strand break repair;0.00790865629756345!GO:0042110;T cell activation;0.00837000518352086!GO:0005798;Golgi-associated vesicle;0.00840229136477497!GO:0030695;GTPase regulator activity;0.00867715560251563!GO:0008017;microtubule binding;0.00876484903354588!GO:0042802;identical protein binding;0.00876484903354588!GO:0050811;GABA receptor binding;0.00883072595123899!GO:0003684;damaged DNA binding;0.00893886578934737!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00896744549603393!GO:0009116;nucleoside metabolic process;0.00899418732106433!GO:0009615;response to virus;0.00923091468822867!GO:0000178;exosome (RNase complex);0.00926563996574346!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00927489673728494!GO:0022403;cell cycle phase;0.00986665691613769!GO:0051540;metal cluster binding;0.00990198259027576!GO:0051536;iron-sulfur cluster binding;0.00990198259027576!GO:0030880;RNA polymerase complex;0.0101518945263578!GO:0006497;protein amino acid lipidation;0.0101622708895653!GO:0016272;prefoldin complex;0.0101622708895653!GO:0030521;androgen receptor signaling pathway;0.0102302540088836!GO:0005070;SH3/SH2 adaptor activity;0.010339326133305!GO:0006376;mRNA splice site selection;0.010339326133305!GO:0000389;nuclear mRNA 3'-splice site recognition;0.010339326133305!GO:0032508;DNA duplex unwinding;0.0104181571456676!GO:0032392;DNA geometric change;0.0104181571456676!GO:0015980;energy derivation by oxidation of organic compounds;0.010490662125827!GO:0006506;GPI anchor biosynthetic process;0.0107081288601807!GO:0005774;vacuolar membrane;0.0109679791071997!GO:0008094;DNA-dependent ATPase activity;0.0111176094575812!GO:0046467;membrane lipid biosynthetic process;0.0111257775660823!GO:0022415;viral reproductive process;0.0111530284095208!GO:0047485;protein N-terminus binding;0.0111812436800435!GO:0001772;immunological synapse;0.0113192981329494!GO:0019901;protein kinase binding;0.0117857807703257!GO:0008624;induction of apoptosis by extracellular signals;0.0119571330898684!GO:0016790;thiolester hydrolase activity;0.0123790217776459!GO:0006505;GPI anchor metabolic process;0.0127749119877568!GO:0048522;positive regulation of cellular process;0.0127983029286282!GO:0043621;protein self-association;0.013028130244647!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0133183928312562!GO:0043022;ribosome binding;0.0135093531208955!GO:0050852;T cell receptor signaling pathway;0.0138198640288204!GO:0008139;nuclear localization sequence binding;0.014138850292785!GO:0009967;positive regulation of signal transduction;0.014283121774893!GO:0016853;isomerase activity;0.0145737606667352!GO:0000119;mediator complex;0.0146129512000066!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0148292823568661!GO:0008276;protein methyltransferase activity;0.0150281623934253!GO:0003682;chromatin binding;0.0160939689278428!GO:0000049;tRNA binding;0.0166426961125815!GO:0006595;polyamine metabolic process;0.0168422221582539!GO:0008097;5S rRNA binding;0.0171832701253534!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.01723491506731!GO:0000428;DNA-directed RNA polymerase complex;0.01723491506731!GO:0030522;intracellular receptor-mediated signaling pathway;0.01725672256978!GO:0015630;microtubule cytoskeleton;0.0176100851034794!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0176684406192395!GO:0019900;kinase binding;0.0177643739281351!GO:0051098;regulation of binding;0.0178062787377385!GO:0009165;nucleotide biosynthetic process;0.0179894909454409!GO:0031461;cullin-RING ubiquitin ligase complex;0.0180160732352989!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.018056480543244!GO:0000175;3'-5'-exoribonuclease activity;0.0182313788521463!GO:0000738;DNA catabolic process, exonucleolytic;0.0184764324318495!GO:0006914;autophagy;0.0184764324318495!GO:0051251;positive regulation of lymphocyte activation;0.0186662525345616!GO:0031902;late endosome membrane;0.0188744221460652!GO:0006354;RNA elongation;0.0190418615370875!GO:0005665;DNA-directed RNA polymerase II, core complex;0.01984889449049!GO:0005869;dynactin complex;0.0200636040467248!GO:0051052;regulation of DNA metabolic process;0.0202457636965991!GO:0032200;telomere organization and biogenesis;0.0204353981040206!GO:0000723;telomere maintenance;0.0204353981040206!GO:0030658;transport vesicle membrane;0.0204353981040206!GO:0007004;telomere maintenance via telomerase;0.0204464604295942!GO:0044437;vacuolar part;0.0205364506906182!GO:0005765;lysosomal membrane;0.0205851754276894!GO:0000059;protein import into nucleus, docking;0.020890104567523!GO:0044438;microbody part;0.0214310985981528!GO:0044439;peroxisomal part;0.0214310985981528!GO:0051090;regulation of transcription factor activity;0.0214557620202026!GO:0051301;cell division;0.022723827904595!GO:0016585;chromatin remodeling complex;0.0228872031508678!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0232979507202674!GO:0010257;NADH dehydrogenase complex assembly;0.0232979507202674!GO:0033108;mitochondrial respiratory chain complex assembly;0.0232979507202674!GO:0040029;regulation of gene expression, epigenetic;0.0247569497317255!GO:0051329;interphase of mitotic cell cycle;0.0247569497317255!GO:0007034;vacuolar transport;0.0249124416813309!GO:0045603;positive regulation of endothelial cell differentiation;0.0249290259595784!GO:0045947;negative regulation of translational initiation;0.0261418540909281!GO:0046822;regulation of nucleocytoplasmic transport;0.0261902216726696!GO:0042158;lipoprotein biosynthetic process;0.0264480605727907!GO:0016788;hydrolase activity, acting on ester bonds;0.0264515964859509!GO:0004722;protein serine/threonine phosphatase activity;0.0264712075003374!GO:0000287;magnesium ion binding;0.0265917916537003!GO:0006919;caspase activation;0.0269236781445388!GO:0042809;vitamin D receptor binding;0.0274856403847887!GO:0009112;nucleobase metabolic process;0.0278259666115289!GO:0016605;PML body;0.0283010686741431!GO:0000087;M phase of mitotic cell cycle;0.0284015863439396!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0286601289962008!GO:0000096;sulfur amino acid metabolic process;0.0287583213762796!GO:0000776;kinetochore;0.0287583213762796!GO:0007021;tubulin folding;0.028799609528201!GO:0005521;lamin binding;0.0293001645330051!GO:0016791;phosphoric monoester hydrolase activity;0.0299616755541296!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0300338679753866!GO:0051336;regulation of hydrolase activity;0.0303010826938251!GO:0043087;regulation of GTPase activity;0.0305720455668921!GO:0004659;prenyltransferase activity;0.0309292840755919!GO:0051920;peroxiredoxin activity;0.0313750271664802!GO:0004003;ATP-dependent DNA helicase activity;0.0313750271664802!GO:0009966;regulation of signal transduction;0.0314861467848928!GO:0030137;COPI-coated vesicle;0.0324571014975909!GO:0030118;clathrin coat;0.0324858855387826!GO:0008180;signalosome;0.0334858274556695!GO:0005832;chaperonin-containing T-complex;0.0335193824529637!GO:0007067;mitosis;0.0341524189969062!GO:0031903;microbody membrane;0.0342923896931187!GO:0005778;peroxisomal membrane;0.0342923896931187!GO:0046128;purine ribonucleoside metabolic process;0.035169997477501!GO:0042278;purine nucleoside metabolic process;0.035169997477501!GO:0030258;lipid modification;0.0352311273719056!GO:0005777;peroxisome;0.0355416873957815!GO:0042579;microbody;0.0355416873957815!GO:0006268;DNA unwinding during replication;0.0358623877622162!GO:0009451;RNA modification;0.0359275674922382!GO:0030663;COPI coated vesicle membrane;0.0360570821807042!GO:0030126;COPI vesicle coat;0.0360570821807042!GO:0042608;T cell receptor binding;0.036155136876472!GO:0000781;chromosome, telomeric region;0.0369644058839355!GO:0005732;small nucleolar ribonucleoprotein complex;0.0370069891887156!GO:0031647;regulation of protein stability;0.0370069891887156!GO:0022406;membrane docking;0.0375526263953896!GO:0048278;vesicle docking;0.0375526263953896!GO:0003725;double-stranded RNA binding;0.0381278679194592!GO:0000118;histone deacetylase complex;0.0383282043725477!GO:0051325;interphase;0.0387045071633762!GO:0019976;interleukin-2 binding;0.0387045071633762!GO:0004911;interleukin-2 receptor activity;0.0387045071633762!GO:0030660;Golgi-associated vesicle membrane;0.0388736384111605!GO:0051235;maintenance of localization;0.0388978869364839!GO:0045309;protein phosphorylated amino acid binding;0.0389276787576666!GO:0031901;early endosome membrane;0.0389970411748128!GO:0000303;response to superoxide;0.0390435828482737!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0398236507466622!GO:0000090;mitotic anaphase;0.0401822323552032!GO:0051322;anaphase;0.0401822323552032!GO:0031124;mRNA 3'-end processing;0.0405712110562772!GO:0008287;protein serine/threonine phosphatase complex;0.0407227727987183!GO:0002820;negative regulation of adaptive immune response;0.0407941217009275!GO:0002823;negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0407941217009275!GO:0006904;vesicle docking during exocytosis;0.0411083439839089!GO:0008213;protein amino acid alkylation;0.0416705193866177!GO:0006479;protein amino acid methylation;0.0416705193866177!GO:0046519;sphingoid metabolic process;0.0418159770963312!GO:0043596;nuclear replication fork;0.0419038409052367!GO:0043433;negative regulation of transcription factor activity;0.0419038409052367!GO:0001784;phosphotyrosine binding;0.0419626075621157!GO:0006144;purine base metabolic process;0.0420022992008265!GO:0015923;mannosidase activity;0.0429410754959654!GO:0017091;AU-rich element binding;0.0430675653638252!GO:0050779;RNA destabilization;0.0430675653638252!GO:0000289;poly(A) tail shortening;0.0430675653638252!GO:0043281;regulation of caspase activity;0.0441351025855872!GO:0016311;dephosphorylation;0.0442376263996857!GO:0006672;ceramide metabolic process;0.044327605610021!GO:0050870;positive regulation of T cell activation;0.0443600143934426!GO:0006406;mRNA export from nucleus;0.0445024375743326!GO:0016569;covalent chromatin modification;0.0445447685207354!GO:0042393;histone binding;0.0448016099491668!GO:0006013;mannose metabolic process;0.0449111439293973!GO:0033673;negative regulation of kinase activity;0.0449111439293973!GO:0006469;negative regulation of protein kinase activity;0.0449111439293973!GO:0000209;protein polyubiquitination;0.0449301116085369!GO:0046649;lymphocyte activation;0.0461463640405056!GO:0016279;protein-lysine N-methyltransferase activity;0.0467148802521001!GO:0018024;histone-lysine N-methyltransferase activity;0.0467148802521001!GO:0016278;lysine N-methyltransferase activity;0.0467148802521001!GO:0051219;phosphoprotein binding;0.0467858347357441!GO:0046426;negative regulation of JAK-STAT cascade;0.0479093424688764!GO:0016570;histone modification;0.0480792240593271!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0481143622199282!GO:0005096;GTPase activator activity;0.0497054692014038!GO:0016407;acetyltransferase activity;0.0497054692014038!GO:0006308;DNA catabolic process;0.0497054692014038 | |||
|sample_id=11780 | |sample_id=11780 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=PAX3,7:3.94179005963;CREB1:3.54504173135;FOX{D1,D2}:3.05735576468;ATF4:2.84688859586;TLX2:2.78972411509;FOXO1,3,4:2.69688914624;ATF5_CREB3:2.58729912772;FOX{F1,F2,J1}:2.54065566135;BPTF:2.53274585007;RUNX1..3:2.49453431394;ELF1,2,4:2.32145000166;ELK1,4_GABP{A,B1}:2.0226157355;HIF1A:2.021996272;FOXN1:1.90625075121;PDX1:1.90567679946;ETS1,2:1.86433395804;DMAP1_NCOR{1,2}_SMARC:1.84489750261;HMX1:1.76084149385;PBX1:1.70107771169;ATF2:1.67422418805;RORA:1.56933241087;RFX2..5_RFXANK_RFXAP:1.54678521909;PAX6:1.53598798672;JUN:1.50098690866;CDX1,2,4:1.4564407069;PAX2:1.42662291107;FOX{I1,J2}:1.38821133327;LEF1_TCF7_TCF7L1,2:1.34913932952;ATF6:1.27354866456;SPI1:1.25920499594;BREu{core}:1.00074735062;STAT1,3:0.967532216247;T:0.935776785226;SOX2:0.902244990473;TGIF1:0.867063138919;IRF1,2:0.853640031607;ZBTB16:0.853353381424;AHR_ARNT_ARNT2:0.81080611433;RFX1:0.795846538481;SPIB:0.793418077534;SPZ1:0.782394701807;ZEB1:0.770324956744;GATA6:0.702816594686;NFATC1..3:0.662482744609;NKX6-1,2:0.655489878114;CRX:0.595009634733;YY1:0.520745802649;AR:0.49775784643;POU1F1:0.496677033846;NANOG{mouse}:0.484531420711;SNAI1..3:0.470187451971;CUX2:0.453596602565;NFKB1_REL_RELA:0.45110871117;MAFB:0.393498417331;SOX5:0.380375049002;EP300:0.366932588024;NRF1:0.358114930701;NFIX:0.343762199841;NKX3-1:0.340742916623;NFIL3:0.319085540914;HAND1,2:0.317475282693;IKZF2:0.299337186472;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.296026753226;FOXQ1:0.287387980427;POU2F1..3:0.269349258947;SREBF1,2:0.267068825952;IRF7:0.251143825012;HES1:0.249877475881;TBX4,5:0.244655074482;NKX2-1,4:0.232340327133;FOXP1:0.225628835474;HOX{A6,A7,B6,B7}:0.210521803746;LMO2:0.207148362027;NANOG:0.162459350177;MYOD1:0.118676478556;PAX4:0.115827952175;MYB:0.0778193374898;NFY{A,B,C}:0.0550649668606;FOXA2:0.0322574911481;VSX1,2:0.023348754959;ALX1:-0.0238724575745;NR5A1,2:-0.0373235732458;AIRE:-0.0848632792325;HBP1_HMGB_SSRP1_UBTF:-0.0870169073085;NKX2-2,8:-0.0976348771784;ZNF143:-0.126179623262;EGR1..3:-0.135095270652;TAL1_TCF{3,4,12}:-0.15174080466;FOSL2:-0.188245637535;PITX1..3:-0.219928260238;NFE2L1:-0.236254979313;RBPJ:-0.236680546477;E2F1..5:-0.247156649749;HLF:-0.274006129712;OCT4_SOX2{dimer}:-0.274065557886;ALX4:-0.365073808061;HNF4A_NR2F1,2:-0.365159703742;PAX5:-0.374194225104;SMAD1..7,9:-0.413184419745;HNF1A:-0.420094737775;STAT2,4,6:-0.481645278184;ZNF384:-0.483494746626;FOS_FOS{B,L1}_JUN{B,D}:-0.502405787692;NHLH1,2:-0.51274605626;PRRX1,2:-0.528370080791;EVI1:-0.53369130597;STAT5{A,B}:-0.543087795273;ADNP_IRX_SIX_ZHX:-0.55502161608;GFI1:-0.562720667224;CEBPA,B_DDIT3:-0.589522329271;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.614237026438;FOXP3:-0.642919063554;MYFfamily:-0.652895056702;RREB1:-0.655819560842;PPARG:-0.671935993017;MEF2{A,B,C,D}:-0.676301283735;GCM1,2:-0.687562175175;DBP:-0.69777525856;BACH2:-0.699009534333;GLI1..3:-0.756066684711;ONECUT1,2:-0.765260051007;NFE2:-0.783460477305;MTF1:-0.799007903222;MED-1{core}:-0.825054176104;ZFP161:-0.832217612859;GFI1B:-0.838471282647;bHLH_family:-0.867539024755;SOX{8,9,10}:-0.871432681271;FOXD3:-0.893669094097;ZNF148:-0.923845766407;SOX17:-0.925262864648;HMGA1,2:-0.944400707297;ARID5B:-0.96193204363;SRF:-0.976400364752;LHX3,4:-1.03414396279;TOPORS:-1.08449752615;MTE{core}:-1.09297696215;POU3F1..4:-1.10325428524;SP1:-1.10838931527;PRDM1:-1.15132586678;REST:-1.15521846498;ZBTB6:-1.17421315887;RXRA_VDR{dimer}:-1.17520810995;GATA4:-1.20059083548;NR6A1:-1.22354931286;PATZ1:-1.22566084029;ZNF238:-1.24387570051;PAX8:-1.24725535519;MZF1:-1.25129866317;NR1H4:-1.27612631613;ZNF423:-1.30144453649;UFEwm:-1.31371558688;XCPE1{core}:-1.34043409564;FOXL1:-1.34828898517;MYBL2:-1.35442168356;FOXM1:-1.37248412022;NR3C1:-1.39052748731;TP53:-1.41469424805;HOX{A5,B5}:-1.43931739586;TFAP4:-1.44918711899;XBP1:-1.45015051352;POU5F1:-1.46112134938;MAZ:-1.474228093;TBP:-1.48398238058;NFE2L2:-1.48411895528;NKX2-3_NKX2-5:-1.4849256945;TFCP2:-1.58584168053;GTF2A1,2:-1.60215225426;ESR1:-1.61880383931;RXR{A,B,G}:-1.62437889676;TEAD1:-1.65231824115;EBF1:-1.65415917472;TFAP2B:-1.65923354402;ESRRA:-1.66639353537;HIC1:-1.68937786066;EN1,2:-1.70184126911;GTF2I:-1.7050117355;HOXA9_MEIS1:-1.73048504376;TFDP1:-1.75828272637;HOX{A4,D4}:-1.79732980138;KLF4:-1.80127142513;POU6F1:-1.83645339128;CDC5L:-1.89265018819;TLX1..3_NFIC{dimer}:-1.91829277707;TFAP2{A,C}:-1.93675025689;GZF1:-2.05119633814;ZIC1..3:-2.07775888651;HSF1,2:-2.08517693476;TEF:-2.31224866997;NKX3-2:-2.36363675743;PAX1,9:-2.40152551012;IKZF1:-3.14574734465 | |top_motifs=PAX3,7:3.94179005963;CREB1:3.54504173135;FOX{D1,D2}:3.05735576468;ATF4:2.84688859586;TLX2:2.78972411509;FOXO1,3,4:2.69688914624;ATF5_CREB3:2.58729912772;FOX{F1,F2,J1}:2.54065566135;BPTF:2.53274585007;RUNX1..3:2.49453431394;ELF1,2,4:2.32145000166;ELK1,4_GABP{A,B1}:2.0226157355;HIF1A:2.021996272;FOXN1:1.90625075121;PDX1:1.90567679946;ETS1,2:1.86433395804;DMAP1_NCOR{1,2}_SMARC:1.84489750261;HMX1:1.76084149385;PBX1:1.70107771169;ATF2:1.67422418805;RORA:1.56933241087;RFX2..5_RFXANK_RFXAP:1.54678521909;PAX6:1.53598798672;JUN:1.50098690866;CDX1,2,4:1.4564407069;PAX2:1.42662291107;FOX{I1,J2}:1.38821133327;LEF1_TCF7_TCF7L1,2:1.34913932952;ATF6:1.27354866456;SPI1:1.25920499594;BREu{core}:1.00074735062;STAT1,3:0.967532216247;T:0.935776785226;SOX2:0.902244990473;TGIF1:0.867063138919;IRF1,2:0.853640031607;ZBTB16:0.853353381424;AHR_ARNT_ARNT2:0.81080611433;RFX1:0.795846538481;SPIB:0.793418077534;SPZ1:0.782394701807;ZEB1:0.770324956744;GATA6:0.702816594686;NFATC1..3:0.662482744609;NKX6-1,2:0.655489878114;CRX:0.595009634733;YY1:0.520745802649;AR:0.49775784643;POU1F1:0.496677033846;NANOG{mouse}:0.484531420711;SNAI1..3:0.470187451971;CUX2:0.453596602565;NFKB1_REL_RELA:0.45110871117;MAFB:0.393498417331;SOX5:0.380375049002;EP300:0.366932588024;NRF1:0.358114930701;NFIX:0.343762199841;NKX3-1:0.340742916623;NFIL3:0.319085540914;HAND1,2:0.317475282693;IKZF2:0.299337186472;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.296026753226;FOXQ1:0.287387980427;POU2F1..3:0.269349258947;SREBF1,2:0.267068825952;IRF7:0.251143825012;HES1:0.249877475881;TBX4,5:0.244655074482;NKX2-1,4:0.232340327133;FOXP1:0.225628835474;HOX{A6,A7,B6,B7}:0.210521803746;LMO2:0.207148362027;NANOG:0.162459350177;MYOD1:0.118676478556;PAX4:0.115827952175;MYB:0.0778193374898;NFY{A,B,C}:0.0550649668606;FOXA2:0.0322574911481;VSX1,2:0.023348754959;ALX1:-0.0238724575745;NR5A1,2:-0.0373235732458;AIRE:-0.0848632792325;HBP1_HMGB_SSRP1_UBTF:-0.0870169073085;NKX2-2,8:-0.0976348771784;ZNF143:-0.126179623262;EGR1..3:-0.135095270652;TAL1_TCF{3,4,12}:-0.15174080466;FOSL2:-0.188245637535;PITX1..3:-0.219928260238;NFE2L1:-0.236254979313;RBPJ:-0.236680546477;E2F1..5:-0.247156649749;HLF:-0.274006129712;OCT4_SOX2{dimer}:-0.274065557886;ALX4:-0.365073808061;HNF4A_NR2F1,2:-0.365159703742;PAX5:-0.374194225104;SMAD1..7,9:-0.413184419745;HNF1A:-0.420094737775;STAT2,4,6:-0.481645278184;ZNF384:-0.483494746626;FOS_FOS{B,L1}_JUN{B,D}:-0.502405787692;NHLH1,2:-0.51274605626;PRRX1,2:-0.528370080791;EVI1:-0.53369130597;STAT5{A,B}:-0.543087795273;ADNP_IRX_SIX_ZHX:-0.55502161608;GFI1:-0.562720667224;CEBPA,B_DDIT3:-0.589522329271;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.614237026438;FOXP3:-0.642919063554;MYFfamily:-0.652895056702;RREB1:-0.655819560842;PPARG:-0.671935993017;MEF2{A,B,C,D}:-0.676301283735;GCM1,2:-0.687562175175;DBP:-0.69777525856;BACH2:-0.699009534333;GLI1..3:-0.756066684711;ONECUT1,2:-0.765260051007;NFE2:-0.783460477305;MTF1:-0.799007903222;MED-1{core}:-0.825054176104;ZFP161:-0.832217612859;GFI1B:-0.838471282647;bHLH_family:-0.867539024755;SOX{8,9,10}:-0.871432681271;FOXD3:-0.893669094097;ZNF148:-0.923845766407;SOX17:-0.925262864648;HMGA1,2:-0.944400707297;ARID5B:-0.96193204363;SRF:-0.976400364752;LHX3,4:-1.03414396279;TOPORS:-1.08449752615;MTE{core}:-1.09297696215;POU3F1..4:-1.10325428524;SP1:-1.10838931527;PRDM1:-1.15132586678;REST:-1.15521846498;ZBTB6:-1.17421315887;RXRA_VDR{dimer}:-1.17520810995;GATA4:-1.20059083548;NR6A1:-1.22354931286;PATZ1:-1.22566084029;ZNF238:-1.24387570051;PAX8:-1.24725535519;MZF1:-1.25129866317;NR1H4:-1.27612631613;ZNF423:-1.30144453649;UFEwm:-1.31371558688;XCPE1{core}:-1.34043409564;FOXL1:-1.34828898517;MYBL2:-1.35442168356;FOXM1:-1.37248412022;NR3C1:-1.39052748731;TP53:-1.41469424805;HOX{A5,B5}:-1.43931739586;TFAP4:-1.44918711899;XBP1:-1.45015051352;POU5F1:-1.46112134938;MAZ:-1.474228093;TBP:-1.48398238058;NFE2L2:-1.48411895528;NKX2-3_NKX2-5:-1.4849256945;TFCP2:-1.58584168053;GTF2A1,2:-1.60215225426;ESR1:-1.61880383931;RXR{A,B,G}:-1.62437889676;TEAD1:-1.65231824115;EBF1:-1.65415917472;TFAP2B:-1.65923354402;ESRRA:-1.66639353537;HIC1:-1.68937786066;EN1,2:-1.70184126911;GTF2I:-1.7050117355;HOXA9_MEIS1:-1.73048504376;TFDP1:-1.75828272637;HOX{A4,D4}:-1.79732980138;KLF4:-1.80127142513;POU6F1:-1.83645339128;CDC5L:-1.89265018819;TLX1..3_NFIC{dimer}:-1.91829277707;TFAP2{A,C}:-1.93675025689;GZF1:-2.05119633814;ZIC1..3:-2.07775888651;HSF1,2:-2.08517693476;TEF:-2.31224866997;NKX3-2:-2.36363675743;PAX1,9:-2.40152551012;IKZF1:-3.14574734465 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11780-124A7;search_select_hide=table117:FF:11780-124A7 | |||
}} | }} | ||
Latest revision as of 18:19, 4 June 2020
| Name: | CD4+CD25+CD45RA+ naive regulatory T cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13238 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13238
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13238
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.699 |
| 10 | 10 | 0.0238 |
| 100 | 100 | 0.615 |
| 101 | 101 | 0.488 |
| 102 | 102 | 0.654 |
| 103 | 103 | 0.873 |
| 104 | 104 | 0.866 |
| 105 | 105 | 0.371 |
| 106 | 106 | 0.705 |
| 107 | 107 | 1.49079e-4 |
| 108 | 108 | 0.391 |
| 109 | 109 | 0.278 |
| 11 | 11 | 0.511 |
| 110 | 110 | 0.853 |
| 111 | 111 | 0.873 |
| 112 | 112 | 0.974 |
| 113 | 113 | 0.694 |
| 114 | 114 | 0.997 |
| 115 | 115 | 0.359 |
| 116 | 116 | 0.0613 |
| 117 | 117 | 0.00361 |
| 118 | 118 | 0.352 |
| 119 | 119 | 0.0766 |
| 12 | 12 | 0.826 |
| 120 | 120 | 0.954 |
| 121 | 121 | 0.805 |
| 122 | 122 | 0.567 |
| 123 | 123 | 0.0281 |
| 124 | 124 | 0.71 |
| 125 | 125 | 0.224 |
| 126 | 126 | 0.914 |
| 127 | 127 | 0.982 |
| 128 | 128 | 0.0988 |
| 129 | 129 | 0.886 |
| 13 | 13 | 0.543 |
| 130 | 130 | 0.543 |
| 131 | 131 | 0.256 |
| 132 | 132 | 0.296 |
| 133 | 133 | 0.965 |
| 134 | 134 | 0.843 |
| 135 | 135 | 0.912 |
| 136 | 136 | 0.755 |
| 137 | 137 | 0.0492 |
| 138 | 138 | 0.445 |
| 139 | 139 | 0.198 |
| 14 | 14 | 0.764 |
| 140 | 140 | 0.27 |
| 141 | 141 | 0.642 |
| 142 | 142 | 0.54 |
| 143 | 143 | 0.0101 |
| 144 | 144 | 0.813 |
| 145 | 145 | 0.308 |
| 146 | 146 | 0.792 |
| 147 | 147 | 0.0197 |
| 148 | 148 | 0.659 |
| 149 | 149 | 0.41 |
| 15 | 15 | 0.401 |
| 150 | 150 | 0.861 |
| 151 | 151 | 0.902 |
| 152 | 152 | 0.241 |
| 153 | 153 | 0.871 |
| 154 | 154 | 0.553 |
| 155 | 155 | 0.0107 |
| 156 | 156 | 0.911 |
| 157 | 157 | 0.54 |
| 158 | 158 | 0.00486 |
| 159 | 159 | 0.589 |
| 16 | 16 | 0.373 |
| 160 | 160 | 0.13 |
| 161 | 161 | 0.788 |
| 162 | 162 | 0.00676 |
| 163 | 163 | 0.666 |
| 164 | 164 | 0.111 |
| 165 | 165 | 0.874 |
| 166 | 166 | 0.214 |
| 167 | 167 | 0.0838 |
| 168 | 168 | 0.88 |
| 169 | 169 | 0.0921 |
| 17 | 17 | 0.519 |
| 18 | 18 | 0.686 |
| 19 | 19 | 0.0429 |
| 2 | 2 | 0.226 |
| 20 | 20 | 0.296 |
| 21 | 21 | 0.841 |
| 22 | 22 | 0.374 |
| 23 | 23 | 0.27 |
| 24 | 24 | 0.646 |
| 25 | 25 | 0.101 |
| 26 | 26 | 0.961 |
| 27 | 27 | 0.806 |
| 28 | 28 | 0.581 |
| 29 | 29 | 0.0323 |
| 3 | 3 | 0.462 |
| 30 | 30 | 0.156 |
| 31 | 31 | 0.616 |
| 32 | 32 | 0.0273 |
| 33 | 33 | 0.126 |
| 34 | 34 | 0.339 |
| 35 | 35 | 0.475 |
| 36 | 36 | 0.0354 |
| 37 | 37 | 0.572 |
| 38 | 38 | 0.767 |
| 39 | 39 | 0.178 |
| 4 | 4 | 0.775 |
| 40 | 40 | 0.814 |
| 41 | 41 | 0.0803 |
| 42 | 42 | 0.253 |
| 43 | 43 | 0.733 |
| 44 | 44 | 0.977 |
| 45 | 45 | 0.188 |
| 46 | 46 | 0.84 |
| 47 | 47 | 0.36 |
| 48 | 48 | 0.682 |
| 49 | 49 | 0.322 |
| 5 | 5 | 0.666 |
| 50 | 50 | 0.513 |
| 51 | 51 | 0.969 |
| 52 | 52 | 0.273 |
| 53 | 53 | 0.678 |
| 54 | 54 | 0.834 |
| 55 | 55 | 0.829 |
| 56 | 56 | 0.747 |
| 57 | 57 | 0.756 |
| 58 | 58 | 0.18 |
| 59 | 59 | 0.518 |
| 6 | 6 | 0.692 |
| 60 | 60 | 0.9 |
| 61 | 61 | 0.0885 |
| 62 | 62 | 0.287 |
| 63 | 63 | 0.765 |
| 64 | 64 | 0.695 |
| 65 | 65 | 0.629 |
| 66 | 66 | 0.927 |
| 67 | 67 | 0.841 |
| 68 | 68 | 0.483 |
| 69 | 69 | 0.956 |
| 7 | 7 | 0.466 |
| 70 | 70 | 0.271 |
| 71 | 71 | 0.209 |
| 72 | 72 | 0.12 |
| 73 | 73 | 0.915 |
| 74 | 74 | 0.69 |
| 75 | 75 | 0.00675 |
| 76 | 76 | 0.0498 |
| 77 | 77 | 0.00563 |
| 78 | 78 | 0.358 |
| 79 | 79 | 0.345 |
| 8 | 8 | 0.346 |
| 80 | 80 | 0.0205 |
| 81 | 81 | 0.674 |
| 82 | 82 | 0.432 |
| 83 | 83 | 0.99 |
| 84 | 84 | 0.613 |
| 85 | 85 | 0.226 |
| 86 | 86 | 0.2 |
| 87 | 87 | 0.826 |
| 88 | 88 | 0.996 |
| 89 | 89 | 0.0403 |
| 9 | 9 | 0.909 |
| 90 | 90 | 0.188 |
| 91 | 91 | 0.962 |
| 92 | 92 | 0.666 |
| 93 | 93 | 0.849 |
| 94 | 94 | 0.312 |
| 95 | 95 | 0.0101 |
| 96 | 96 | 0.638 |
| 97 | 97 | 0.301 |
| 98 | 98 | 0.377 |
| 99 | 99 | 6.80335e-6 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13238
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002677 naive regulatory T cell
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
0000815 (regulatory T cell)
0000898 (naive T cell)
0000792 (CD4-positive, CD25-positive, alpha-beta regulatory T cell)
0002677 (naive regulatory T cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)
