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(Created page with "{{f5samples |id=FF:10787-110H4 |name=rhabdomyosarcoma cell line:KYM-1, biol_rep1 |sample_id=10787 |rna_tube_id=110H4 |rna_box=110 |rna_position=H4 |sample_cell_lot= |s...")
 
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{{f5samples
{{f5samples
|id=FF:10787-110H4
|DRA_sample_Accession=CAGE@SAMD00005269
|name=rhabdomyosarcoma cell line:KYM-1, biol_rep1
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005269
|sample_id=10787
|accession_numbers=CAGE;DRX007993;DRR008865;DRZ000290;DRZ001675;DRZ011640;DRZ013025
|rna_tube_id=110H4
|accession_numbers_RNASeq=RNA-Seq;DRX057140;DRR062899;DRZ007975
|rna_box=110
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_position=H4
|sample_cell_lot=
|sample_cell_catalog=jcrb0627
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=neck
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=9 months
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=2.13000
|rna_od260/280=2.05000
|sample_cell_type=unclassifiable
|sample_cell_line=KYM-1
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=rhabdomyosarcoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=36.09198
|rna_concentration=1.33674
|sample_note=
|profile_hcage=CNhs11877,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115
|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:4
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400,FF:0102267
|sample_description=
|comment=
 
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr10:48355030..48355090,+!p1@ZNF488!2.06!144.95!ZNF488;;chr4:174451370..174451387,-!p1@HAND2!2.04!108.10!HAND2;;chr12:66218598..66218645,+!p2@HMGA2!1.87!317.46!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.80!161.92!HMGA2;;chr13:72441315..72441454,-!p1@DACH1!1.80!121.36!DACH1;;chr13:72441074..72441172,-!p2@DACH1!1.80!61.84!DACH1;;chr17:41739283..41739297,-!p1@MEOX1!1.80!61.72!MEOX1;;chr3:12330560..12330579,+!p1@PPARG!1.68!53.35!PPARG;;chr2:172967621..172967637,-!p1@DLX2!1.67!118.68!DLX2;;chr15:96869511..96869525,+!p16@NR2F2!1.67!50.10!NR2F2;;chr19:1753498..1753519,+!p1@ONECUT3!1.66!44.75!ONECUT3;;chr2:172949484..172949522,+!p1@DLX1!1.64!43.13!DLX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!50.22!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.62!41.15!HOXB6;;chr8:11561684..11561751,+!p1@GATA4!1.61!39.75!GATA4;;chr12:66218212..66218244,+!p5@HMGA2!1.57!51.96!HMGA2;;chr9:126774018..126774055,+!p1@LHX2!1.57!36.15!LHX2;;chr17:35294075..35294102,+!p1@ENST00000559335!1.54!33.94!LHX1;;chr12:66218183..66218209,+!p4@HMGA2!1.53!61.49!HMGA2;;chr11:32457075..32457095,-!p1@WT1!1.52!32.32!WT1;;chr17:59477233..59477263,+!p1@TBX2!1.47!85.20!TBX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.44!26.39!HOXC5;;chr5:92919375..92919438,+!p6@NR2F1!1.42!27.55!NR2F1;;chr10:102505327..102505344,+!p1@PAX2!1.41!24.88!PAX2;;chr5:169532896..169532904,+!p1@FOXI1!1.41!24.64!FOXI1;;chr10:94449703..94449718,+!p1@HHEX!1.39!87.65!HHEX;;chr13:100623375..100623425,-!p1@ZIC5!1.39!23.71!ZIC5;;chr9:126773880..126773895,+!p2@LHX2!1.39!23.60!LHX2;;chr10:102891048..102891078,+!p1@TLX1!1.39!23.48!TLX1;;chr2:172950227..172950249,+!p2@DLX1!1.39!23.48!DLX1;;chr4:4861385..4861398,+!p1@MSX1!1.38!66.26!MSX1;;chr13:100634031..100634045,+!p1@ZIC2!1.38!23.02!ZIC2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.37!22.32!SEBOX;;chr17:70117153..70117174,+!p1@SOX9!1.35!211.68!SOX9;;chr12:66218573..66218596,+!p7@HMGA2!1.35!31.50!HMGA2;;chr17:41622765..41622821,-!p2@ETV4!1.34!31.50!ETV4;;chr12:26277817..26277863,-!p2@BHLHE41!1.32!26.97!BHLHE41;;chr14:21994337..21994442,-!p1@SALL2!1.31!53.12!SALL2;;chr20:50179368..50179392,-!p2@NFATC2!1.30!24.53!NFATC2;;chr12:66218836..66218888,+!p1@HMGA2!1.29!169.36!HMGA2;;chr17:59477197..59477212,+!p2@TBX2!1.28!31.15!TBX2;;chr17:59477275..59477286,+!p3@TBX2!1.28!23.95!TBX2;;chr2:172967242..172967265,-!p2@DLX2!1.27!17.78!DLX2;;chr12:54348655..54348693,+!p1@HOXC12!1.27!17.78!HOXC12;;chr12:54393880..54393962,+!p1@HOXC9!1.23!16.16!HOXC9;;chr4:174450089..174450153,-!p2@HAND2!1.23!16.16!HAND2;;chr4:299227..299272,-!p1@ZNF732!1.23!15.93!ZNF732;;chr8:37963466..37963506,+!p3@ASH2L!1.21!19.18!ASH2L;;chr20:31350184..31350200,+!p1@DNMT3B!1.20!30.57!DNMT3B;;chr7:73038839..73038862,-!p1@MLXIPL!1.20!15.00!MLXIPL;;chr17:41622731..41622764,-!p5@ETV4!1.20!14.76!ETV4;;chr9:126774058..126774081,+!p3@LHX2!1.20!14.76!LHX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.19!15.46!GLIS1;;chr15:68115672..68115691,+!p1@SKOR1!1.19!14.41!SKOR1;;chr5:92918919..92918942,+!p1@NR2F1!1.18!63.00!NR2F1;;chr6:10412600..10412637,-!p1@TFAP2A!1.18!23.71!TFAP2A;;chr19:13134772..13134822,+!p2@NFIX!1.17!20.23!NFIX;;chr12:66218443..66218461,+!p8@HMGA2!1.17!17.55!HMGA2;;chr10:102891168..102891197,+!p3@TLX1!1.17!13.72!TLX1;;chr12:54379029..54379057,+!p2@HOXC10!1.16!13.60!HOXC10;;chr17:46703687..46703740,-!p1@HOXB9!1.16!13.48!HOXB9;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!13.25!TFAP2A;;chr2:172967276..172967296,-!p3@DLX2!1.15!13.02!DLX2;;chr12:26277956..26277980,-!p1@BHLHE41!1.14!45.92!BHLHE41;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.14!12.67!SEBOX;;chr2:172967353..172967365,-!p5@DLX2!1.13!12.55!DLX2;;chr7:27192185..27192209,-!p1@HOXA3!1.13!12.44!HOXA3;;chr12:66218378..66218401,+!p6@HMGA2!1.12!19.06!HMGA2;;chr2:172967323..172967336,-!p4@DLX2!1.11!11.97!DLX2;;chr15:37392094..37392116,-!p6@MEIS2!1.10!14.41!MEIS2;;chr6:10412392..10412409,-!p4@TFAP2A!1.10!13.25!TFAP2A;;chr10:70320074..70320106,+!p1@TET1!1.08!22.09!TET1;;chr5:92919100..92919135,+!p3@NR2F1!1.08!13.37!NR2F1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.08!10.93!ZBED1;;chr2:157189180..157189290,-!p1@NR4A2!1.07!56.73!NR4A2;;chr20:50721803..50721857,-!p2@ZFP64!1.07!17.09!ZFP64;;chr12:24715376..24715432,-!p1@SOX5!1.07!13.72!SOX5;;chr12:54366894..54366922,+!p2@HOXC11!1.07!10.81!HOXC11;;chr12:66218152..66218174,+!p10@HMGA2!1.06!11.39!HMGA2;;chr7:27153454..27153469,-!p2@HOXA3!1.06!10.46!HOXA3;;chr16:29818199..29818216,+!p11@MAZ!1.05!16.86!MAZ;;chr4:174451350..174451363,-!p3@HAND2!1.05!10.11!HAND2;;chr8:99956662..99956684,+!p1@OSR2!1.04!15.46!OSR2;;chr15:37391588..37391604,-!p11@MEIS2!1.04!12.90!MEIS2;;chr17:46622205..46622218,-!p3@HOXB2!1.03!11.16!HOXB2;;chr10:102505493..102505546,+!p2@PAX2!1.03!9.65!PAX2;;chr17:46622070..46622109,-!p1@HOXB2!1.02!21.27!HOXB2;;chr2:200323414..200323455,-!p1@SATB2!1.02!20.34!SATB2;;chr8:11561453..11561466,+!p2@GATA4!1.02!9.53!GATA4;;chr12:57853634..57853662,+!p2@GLI1!1.02!9.42!GLI1;;chr12:66218420..66218439,+!p12@HMGA2!1.02!9.42!HMGA2;;chr2:12149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|fonse_cell_line=FF:0100400
|fonse_cell_line=FF:0100400
|fonse_cell_line_closure=FF:0100400
|fonse_cell_line_closure=FF:0100400
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aKYM-1.CNhs11877.10787-110H4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aKYM-1.CNhs11877.10787-110H4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aKYM-1.CNhs11877.10787-110H4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aKYM-1.CNhs11877.10787-110H4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aKYM-1.CNhs11877.10787-110H4.hg38.nobarcode.ctss.bed.gz
|id=FF:10787-110H4
|is_a=EFO:0002091;;FF:0000210;;FF:0102267
|is_obsolete=
|library_id=CNhs11877
|library_id_phase_based=2:CNhs11877
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10787
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10787
|name=rhabdomyosarcoma cell line:KYM-1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11877,LSID830,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=110
|rna_catalog_number=
|rna_concentration=1.33674
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.13
|rna_od260/280=2.05
|rna_position=H4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=110H4
|rna_weight_ug=36.09198
|rnaseq_library_id=RDhi10083
|sample_age=9 months
|sample_category=cell lines
|sample_cell_catalog=jcrb0627
|sample_cell_line=KYM-1
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|sample_description=
|sample_dev_stage=
|sample_disease=rhabdomyosarcoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.40074110276403e-283!GO:0043231;intracellular membrane-bound organelle;3.43536568011679e-244!GO:0043227;membrane-bound organelle;3.63029631632477e-244!GO:0043226;organelle;6.44181612791032e-240!GO:0043229;intracellular organelle;3.52177546596244e-239!GO:0044422;organelle part;3.66933598652134e-171!GO:0044446;intracellular organelle part;1.19241867521563e-169!GO:0005737;cytoplasm;1.57693413723763e-166!GO:0044444;cytoplasmic part;1.03435502478318e-122!GO:0032991;macromolecular complex;3.06110571016547e-122!GO:0005634;nucleus;1.10571098035561e-120!GO:0044237;cellular metabolic process;5.2937555793061e-106!GO:0044238;primary metabolic process;1.73851950587879e-104!GO:0043170;macromolecule metabolic process;3.80783488535757e-103!GO:0043233;organelle lumen;1.90691247536164e-94!GO:0031974;membrane-enclosed lumen;1.90691247536164e-94!GO:0030529;ribonucleoprotein complex;2.22322067980537e-93!GO:0044428;nuclear part;2.59126966623514e-93!GO:0003723;RNA binding;5.2748036384108e-86!GO:0005739;mitochondrion;4.34821539664223e-83!GO:0043283;biopolymer metabolic process;5.1123479445784e-66!GO:0043234;protein complex;7.52082103877257e-65!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.08427648385636e-65!GO:0010467;gene expression;5.83102985530516e-60!GO:0006396;RNA processing;1.05749486523942e-59!GO:0005515;protein binding;4.52689470805774e-58!GO:0031981;nuclear lumen;2.87782595010261e-57!GO:0044429;mitochondrial part;3.57912491450215e-55!GO:0005840;ribosome;3.67909274344575e-53!GO:0006412;translation;2.76033887029961e-50!GO:0006259;DNA metabolic process;1.05110754697665e-48!GO:0031967;organelle envelope;2.74088165356113e-48!GO:0031090;organelle membrane;3.90914033561843e-48!GO:0003676;nucleic acid binding;4.62360935127011e-48!GO:0031975;envelope;6.75063493784509e-48!GO:0016071;mRNA metabolic process;1.48139642799504e-47!GO:0016043;cellular component organization and biogenesis;1.48139642799504e-47!GO:0003735;structural constituent of ribosome;2.40289182374859e-46!GO:0019538;protein metabolic process;1.38008894762306e-43!GO:0008380;RNA splicing;1.68386720553196e-43!GO:0015031;protein transport;1.09055171280865e-42!GO:0033036;macromolecule localization;6.64084907900741e-42!GO:0033279;ribosomal subunit;3.72864417351598e-41!GO:0043228;non-membrane-bound organelle;4.14244284184878e-41!GO:0043232;intracellular non-membrane-bound organelle;4.14244284184878e-41!GO:0006397;mRNA processing;6.68725760103881e-41!GO:0006996;organelle organization and biogenesis;1.87410469558693e-40!GO:0044249;cellular biosynthetic process;4.18955734767973e-40!GO:0044267;cellular protein metabolic process;1.39375323099871e-38!GO:0045184;establishment of protein localization;1.84177992378316e-38!GO:0044260;cellular macromolecule metabolic process;1.89393822667177e-38!GO:0046907;intracellular transport;2.95494183701353e-38!GO:0065003;macromolecular complex assembly;3.0170692347058e-38!GO:0008104;protein localization;2.90735628086893e-37!GO:0005829;cytosol;3.70085531565805e-37!GO:0009058;biosynthetic process;6.52300511106344e-36!GO:0005654;nucleoplasm;1.56510274552333e-35!GO:0005740;mitochondrial envelope;6.82340815598705e-35!GO:0009059;macromolecule biosynthetic process;9.00765421617796e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.39871964211014e-34!GO:0019866;organelle inner membrane;4.49988811913356e-33!GO:0016070;RNA metabolic process;4.55001094450421e-33!GO:0022607;cellular component assembly;7.71340020213895e-33!GO:0000166;nucleotide binding;9.06272350057937e-33!GO:0031966;mitochondrial membrane;1.50610292282769e-32!GO:0007049;cell cycle;1.70619354309673e-32!GO:0006886;intracellular protein transport;8.7190234824221e-31!GO:0005743;mitochondrial inner membrane;1.50479014955682e-30!GO:0005681;spliceosome;2.63937995707238e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.83910504950161e-29!GO:0044451;nucleoplasm part;4.47059858082878e-29!GO:0000278;mitotic cell cycle;1.99630051683728e-27!GO:0005694;chromosome;8.0871504507879e-27!GO:0016462;pyrophosphatase activity;8.54586490263485e-27!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.12719938537776e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;1.65849288702755e-26!GO:0017111;nucleoside-triphosphatase activity;1.65991542863344e-26!GO:0006974;response to DNA damage stimulus;1.76440423412803e-26!GO:0051649;establishment of cellular localization;4.9035945976624e-26!GO:0022402;cell cycle process;5.85894170835796e-26!GO:0051641;cellular localization;2.01191655177379e-25!GO:0044427;chromosomal part;2.82718925302713e-25!GO:0006281;DNA repair;3.1170901551457e-25!GO:0031980;mitochondrial lumen;1.33569545002719e-24!GO:0005759;mitochondrial matrix;1.33569545002719e-24!GO:0044455;mitochondrial membrane part;5.94289476224747e-24!GO:0051276;chromosome organization and biogenesis;9.11036603666509e-24!GO:0000087;M phase of mitotic cell cycle;9.34339258006516e-24!GO:0006119;oxidative phosphorylation;9.36353517181773e-24!GO:0044445;cytosolic part;9.44013247273921e-24!GO:0007067;mitosis;2.65782965789937e-23!GO:0022403;cell cycle phase;1.93664377954888e-22!GO:0006512;ubiquitin cycle;4.17027494923814e-22!GO:0005730;nucleolus;4.45577619588232e-22!GO:0006260;DNA replication;7.78196170163489e-22!GO:0032553;ribonucleotide binding;1.24124300259416e-21!GO:0032555;purine ribonucleotide binding;1.24124300259416e-21!GO:0015934;large ribosomal subunit;1.59154544343303e-21!GO:0017076;purine nucleotide binding;3.15572228150629e-21!GO:0000279;M phase;5.30863345748529e-21!GO:0044265;cellular macromolecule catabolic process;6.73219223907367e-21!GO:0015935;small ribosomal subunit;9.11842995949505e-21!GO:0006457;protein folding;6.92829187126375e-20!GO:0043285;biopolymer catabolic process;1.90428358006113e-19!GO:0016887;ATPase activity;2.94305520564856e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;4.02762476000924e-19!GO:0019941;modification-dependent protein catabolic process;6.17815008282342e-19!GO:0043632;modification-dependent macromolecule catabolic process;6.17815008282342e-19!GO:0016874;ligase activity;7.42510717832545e-19!GO:0051301;cell division;8.25573845156793e-19!GO:0009719;response to endogenous stimulus;9.3927795550788e-19!GO:0006511;ubiquitin-dependent protein catabolic process;9.41060147051932e-19!GO:0044257;cellular protein catabolic process;1.00922919722869e-18!GO:0005524;ATP binding;1.02344974643259e-18!GO:0022618;protein-RNA complex assembly;1.1039676542713e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;1.67296809907228e-18!GO:0009057;macromolecule catabolic process;2.15710796324995e-18!GO:0032559;adenyl ribonucleotide binding;2.2095611909382e-18!GO:0006323;DNA packaging;8.45508719924701e-18!GO:0030554;adenyl nucleotide binding;8.550580017473e-18!GO:0005746;mitochondrial respiratory chain;9.93889543282601e-18!GO:0042623;ATPase activity, coupled;1.07219349249549e-17!GO:0012505;endomembrane system;1.30803724965041e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.72599180688332e-17!GO:0044248;cellular catabolic process;1.35222987666345e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.9383345474836e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.84189511479874e-16!GO:0003954;NADH dehydrogenase activity;2.84189511479874e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.84189511479874e-16!GO:0042254;ribosome biogenesis and assembly;3.21455551176682e-16!GO:0005761;mitochondrial ribosome;4.11756218961462e-16!GO:0000313;organellar ribosome;4.11756218961462e-16!GO:0031965;nuclear membrane;6.41972590073323e-16!GO:0044453;nuclear membrane part;7.59502075232921e-16!GO:0030163;protein catabolic process;8.26283645600558e-16!GO:0006605;protein targeting;1.02257821990624e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.57087086062698e-15!GO:0000375;RNA splicing, via transesterification reactions;1.57087086062698e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.57087086062698e-15!GO:0016604;nuclear body;2.22075010118586e-15!GO:0008135;translation factor activity, nucleic acid binding;2.39451140740556e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.34211938705881e-15!GO:0051082;unfolded protein binding;6.79490730864265e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.86732134225445e-14!GO:0042773;ATP synthesis coupled electron transport;1.86732134225445e-14!GO:0000785;chromatin;2.43780287567096e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.39835971408713e-14!GO:0065004;protein-DNA complex assembly;3.53727214370193e-14!GO:0030964;NADH dehydrogenase complex (quinone);3.88341318230799e-14!GO:0045271;respiratory chain complex I;3.88341318230799e-14!GO:0005747;mitochondrial respiratory chain complex I;3.88341318230799e-14!GO:0006333;chromatin assembly or disassembly;4.62015450210993e-14!GO:0004386;helicase activity;4.62015450210993e-14!GO:0044432;endoplasmic reticulum part;4.88215345186427e-14!GO:0005635;nuclear envelope;5.18856192853254e-14!GO:0005783;endoplasmic reticulum;5.84716602062721e-14!GO:0048193;Golgi vesicle transport;8.19786311301168e-14!GO:0006403;RNA localization;8.31616774528082e-14!GO:0051186;cofactor metabolic process;8.90929302707454e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.21661155556832e-13!GO:0008134;transcription factor binding;1.68285965836663e-13!GO:0050657;nucleic acid transport;1.68732921121371e-13!GO:0051236;establishment of RNA localization;1.68732921121371e-13!GO:0050658;RNA transport;1.68732921121371e-13!GO:0005643;nuclear pore;1.72821733650627e-13!GO:0048770;pigment granule;5.55367210012021e-13!GO:0042470;melanosome;5.55367210012021e-13!GO:0006399;tRNA metabolic process;6.46076140437795e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.07893763106956e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.26520928954349e-12!GO:0065002;intracellular protein transport across a membrane;1.55720047080606e-12!GO:0015630;microtubule cytoskeleton;2.80040703648163e-12!GO:0043412;biopolymer modification;3.45066569842077e-12!GO:0008026;ATP-dependent helicase activity;5.88783052330394e-12!GO:0016607;nuclear speck;6.2463726325394e-12!GO:0003743;translation initiation factor activity;8.01459972495106e-12!GO:0051028;mRNA transport;1.15727711677653e-11!GO:0006261;DNA-dependent DNA replication;1.61017169406223e-11!GO:0006413;translational initiation;3.11507276536922e-11!GO:0046930;pore complex;3.48898473311015e-11!GO:0006732;coenzyme metabolic process;4.35267679206494e-11!GO:0006364;rRNA processing;7.66678582943828e-11!GO:0016568;chromatin modification;8.38636062084805e-11!GO:0006446;regulation of translational initiation;9.53779617518919e-11!GO:0006366;transcription from RNA polymerase II promoter;9.76770214782808e-11!GO:0006913;nucleocytoplasmic transport;1.39011012391995e-10!GO:0006163;purine nucleotide metabolic process;1.81364439664809e-10!GO:0016072;rRNA metabolic process;2.08453583160435e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.52840301376161e-10!GO:0000074;regulation of progression through cell cycle;2.59618124275908e-10!GO:0051726;regulation of cell cycle;2.68443178660855e-10!GO:0006334;nucleosome assembly;2.70370080535125e-10!GO:0006461;protein complex assembly;3.25069850456227e-10!GO:0051169;nuclear transport;3.28798523512293e-10!GO:0031497;chromatin assembly;3.63728063589586e-10!GO:0000775;chromosome, pericentric region;3.925291981938e-10!GO:0043687;post-translational protein modification;4.47506876758471e-10!GO:0006164;purine nucleotide biosynthetic process;4.95689313134205e-10!GO:0006464;protein modification process;5.11260625472929e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.11260625472929e-10!GO:0004812;aminoacyl-tRNA ligase activity;5.11260625472929e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.11260625472929e-10!GO:0008565;protein transporter activity;6.29266872922767e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.8914826369908e-10!GO:0005819;spindle;1.04697271512564e-09!GO:0043038;amino acid activation;1.09617327193594e-09!GO:0006418;tRNA aminoacylation for protein translation;1.09617327193594e-09!GO:0043039;tRNA aminoacylation;1.09617327193594e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.19078268889319e-09!GO:0009259;ribonucleotide metabolic process;1.28633256196379e-09!GO:0009056;catabolic process;1.44250237062203e-09!GO:0003712;transcription cofactor activity;1.56623312656194e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.61924800550117e-09!GO:0050794;regulation of cellular process;1.97081602827444e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.11796296730243e-09!GO:0009150;purine ribonucleotide metabolic process;2.15258782609125e-09!GO:0008639;small protein conjugating enzyme activity;2.32830079797119e-09!GO:0005789;endoplasmic reticulum membrane;2.56810826749525e-09!GO:0005794;Golgi apparatus;2.83905383249012e-09!GO:0016192;vesicle-mediated transport;2.8884704602826e-09!GO:0019787;small conjugating protein ligase activity;2.99129008289553e-09!GO:0004842;ubiquitin-protein ligase activity;3.59518023410488e-09!GO:0005813;centrosome;4.04025141187343e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.66140773495356e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.96179036782473e-09!GO:0045333;cellular respiration;6.77670023841864e-09!GO:0005815;microtubule organizing center;7.12124737070518e-09!GO:0003697;single-stranded DNA binding;8.77445441726098e-09!GO:0043566;structure-specific DNA binding;9.62187665416078e-09!GO:0009055;electron carrier activity;1.19078796504587e-08!GO:0009260;ribonucleotide biosynthetic process;1.27482891918747e-08!GO:0015986;ATP synthesis coupled proton transport;1.3005401326651e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.3005401326651e-08!GO:0009060;aerobic respiration;2.43415594392492e-08!GO:0019222;regulation of metabolic process;2.43463901187094e-08!GO:0007005;mitochondrion organization and biogenesis;2.48262932123443e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.70058472259114e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.78686098596577e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.78686098596577e-08!GO:0009141;nucleoside triphosphate metabolic process;2.98992336366953e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.04475932058171e-08!GO:0005667;transcription factor complex;3.70864686966937e-08!GO:0051188;cofactor biosynthetic process;5.19223404571318e-08!GO:0032446;protein modification by small protein conjugation;5.90469813274394e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.90469813274394e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.90469813274394e-08!GO:0017038;protein import;5.90469813274394e-08!GO:0016779;nucleotidyltransferase activity;6.05557649722091e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.30045221859366e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.30045221859366e-08!GO:0016881;acid-amino acid ligase activity;6.8922936872344e-08!GO:0019829;cation-transporting ATPase activity;8.61245130057965e-08!GO:0008094;DNA-dependent ATPase activity;9.45870223454792e-08!GO:0007051;spindle organization and biogenesis;1.18456075263025e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.23204905087924e-07!GO:0016567;protein ubiquitination;1.29251975155035e-07!GO:0006754;ATP biosynthetic process;1.48712912752252e-07!GO:0006753;nucleoside phosphate metabolic process;1.48712912752252e-07!GO:0046034;ATP metabolic process;1.97110868874866e-07!GO:0005788;endoplasmic reticulum lumen;2.08257561329659e-07!GO:0030120;vesicle coat;2.40614934977802e-07!GO:0030662;coated vesicle membrane;2.40614934977802e-07!GO:0045259;proton-transporting ATP synthase complex;2.90483062154417e-07!GO:0000245;spliceosome assembly;3.0482248236188e-07!GO:0006350;transcription;3.07295293100426e-07!GO:0003899;DNA-directed RNA polymerase activity;3.08093628482018e-07!GO:0016469;proton-transporting two-sector ATPase complex;3.09183979318829e-07!GO:0000151;ubiquitin ligase complex;5.266131396662e-07!GO:0016740;transferase activity;6.0201369394931e-07!GO:0005793;ER-Golgi intermediate compartment;6.37849746050138e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.71537490087554e-07!GO:0006752;group transfer coenzyme metabolic process;7.49802618262502e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.25843165650325e-07!GO:0006099;tricarboxylic acid cycle;9.11279781112901e-07!GO:0046356;acetyl-CoA catabolic process;9.11279781112901e-07!GO:0031323;regulation of cellular metabolic process;9.90739821434301e-07!GO:0012501;programmed cell death;1.03428303168678e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.13092774182372e-06!GO:0006084;acetyl-CoA metabolic process;1.20401199863699e-06!GO:0006915;apoptosis;1.53162983462892e-06!GO:0003677;DNA binding;1.69896669689037e-06!GO:0048475;coated membrane;1.77172310357727e-06!GO:0030117;membrane coat;1.77172310357727e-06!GO:0016787;hydrolase activity;1.83418455133965e-06!GO:0051329;interphase of mitotic cell cycle;2.06077636794622e-06!GO:0005657;replication fork;2.20684156135509e-06!GO:0051052;regulation of DNA metabolic process;2.71257885089258e-06!GO:0004298;threonine endopeptidase activity;3.12262681066675e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.35118000143361e-06!GO:0051427;hormone receptor binding;3.82397616334591e-06!GO:0016563;transcription activator activity;3.89142036259281e-06!GO:0003684;damaged DNA binding;4.00890190645183e-06!GO:0003724;RNA helicase activity;4.09309116691433e-06!GO:0009109;coenzyme catabolic process;4.25464571742922e-06!GO:0009108;coenzyme biosynthetic process;4.34447417837571e-06!GO:0005762;mitochondrial large ribosomal subunit;4.34447417837571e-06!GO:0000315;organellar large ribosomal subunit;4.34447417837571e-06!GO:0007017;microtubule-based process;4.8919016353915e-06!GO:0008219;cell death;5.20968162235756e-06!GO:0016265;death;5.20968162235756e-06!GO:0043623;cellular protein complex assembly;6.05438635447488e-06!GO:0050789;regulation of biological process;6.40879429626377e-06!GO:0003924;GTPase activity;7.28809759290546e-06!GO:0003682;chromatin binding;7.5462255130592e-06!GO:0005798;Golgi-associated vesicle;7.61478978459464e-06!GO:0000075;cell cycle checkpoint;8.14868981426423e-06!GO:0035257;nuclear hormone receptor binding;8.24838817952863e-06!GO:0009117;nucleotide metabolic process;9.5363036112188e-06!GO:0006613;cotranslational protein targeting to membrane;1.11167144228855e-05!GO:0051168;nuclear export;1.20609103027401e-05!GO:0010468;regulation of gene expression;1.30239708297974e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.30697967605078e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.35878959972198e-05!GO:0015399;primary active transmembrane transporter activity;1.35878959972198e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.44670740796786e-05!GO:0000786;nucleosome;1.5748760322213e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.67680766430254e-05!GO:0016363;nuclear matrix;1.71417689195619e-05!GO:0051325;interphase;1.7431534956527e-05!GO:0006302;double-strand break repair;1.9076301214181e-05!GO:0032774;RNA biosynthetic process;1.98876250745102e-05!GO:0000776;kinetochore;2.05157174140125e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;2.23935358804529e-05!GO:0006351;transcription, DNA-dependent;2.61059202901459e-05!GO:0051187;cofactor catabolic process;2.63697391797873e-05!GO:0016564;transcription repressor activity;2.81440604203803e-05!GO:0000314;organellar small ribosomal subunit;3.11982247789955e-05!GO:0005763;mitochondrial small ribosomal subunit;3.11982247789955e-05!GO:0051170;nuclear import;3.37150566642588e-05!GO:0006626;protein targeting to mitochondrion;3.39391186633754e-05!GO:0005525;GTP binding;4.2020208504026e-05!GO:0044452;nucleolar part;4.86314435004073e-05!GO:0016741;transferase activity, transferring one-carbon groups;4.86774530974595e-05!GO:0048523;negative regulation of cellular process;5.39508898399335e-05!GO:0008168;methyltransferase activity;5.60139535779331e-05!GO:0006839;mitochondrial transport;5.81103230969411e-05!GO:0005874;microtubule;5.90533619655441e-05!GO:0030880;RNA polymerase complex;5.9156557376882e-05!GO:0006606;protein import into nucleus;6.63487041165718e-05!GO:0005768;endosome;7.16010081418242e-05!GO:0051246;regulation of protein metabolic process;7.48841558369477e-05!GO:0016491;oxidoreductase activity;8.01622915244863e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.03174645815097e-05!GO:0003713;transcription coactivator activity;8.03174645815097e-05!GO:0003729;mRNA binding;8.61946832237893e-05!GO:0006383;transcription from RNA polymerase III promoter;9.37873043382858e-05!GO:0045454;cell redox homeostasis;9.64878864900807e-05!GO:0006352;transcription initiation;9.81510373605534e-05!GO:0007059;chromosome segregation;0.000102275828979353!GO:0008654;phospholipid biosynthetic process;0.000110956146837367!GO:0008033;tRNA processing;0.000111870911592989!GO:0000059;protein import into nucleus, docking;0.000113411715631959!GO:0015980;energy derivation by oxidation of organic compounds;0.000124150562900905!GO:0045786;negative regulation of progression through cell cycle;0.00012564075619993!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000143486621226707!GO:0000428;DNA-directed RNA polymerase complex;0.000143486621226707!GO:0016251;general RNA polymerase II transcription factor activity;0.000152724710722881!GO:0006402;mRNA catabolic process;0.000154558843701683!GO:0043681;protein import into mitochondrion;0.000155769888339999!GO:0015631;tubulin binding;0.000170788384710626!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000171033736005957!GO:0031988;membrane-bound vesicle;0.000171033736005957!GO:0016859;cis-trans isomerase activity;0.000172710710433371!GO:0003714;transcription corepressor activity;0.000185036086056825!GO:0003690;double-stranded DNA binding;0.000186290808826221!GO:0008186;RNA-dependent ATPase activity;0.000187006338520461!GO:0030658;transport vesicle membrane;0.000195336941487214!GO:0006916;anti-apoptosis;0.000201138148929025!GO:0043492;ATPase activity, coupled to movement of substances;0.000207298817581903!GO:0016853;isomerase activity;0.000215032311447941!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000216590042727525!GO:0016023;cytoplasmic membrane-bound vesicle;0.000217670338917581!GO:0032561;guanyl ribonucleotide binding;0.000218498832764259!GO:0019001;guanyl nucleotide binding;0.000218498832764259!GO:0003678;DNA helicase activity;0.000219435217962992!GO:0030867;rough endoplasmic reticulum membrane;0.000219465620035343!GO:0006612;protein targeting to membrane;0.000248842139140963!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000253769437717145!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000261238709970488!GO:0006091;generation of precursor metabolites and energy;0.000263043937534745!GO:0006401;RNA catabolic process;0.00026664262974019!GO:0043069;negative regulation of programmed cell death;0.000276303742686256!GO:0006414;translational elongation;0.000277388528626995!GO:0045449;regulation of transcription;0.00028992732251569!GO:0043021;ribonucleoprotein binding;0.00029849817211652!GO:0016310;phosphorylation;0.000316169447109445!GO:0007052;mitotic spindle organization and biogenesis;0.000322761065588208!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000347480552277449!GO:0005876;spindle microtubule;0.000347480552277449!GO:0006793;phosphorus metabolic process;0.000354872757743381!GO:0006796;phosphate metabolic process;0.000354872757743381!GO:0008250;oligosaccharyl transferase complex;0.000370074390366356!GO:0007093;mitotic cell cycle checkpoint;0.000370083337357274!GO:0031982;vesicle;0.000403221627388295!GO:0031324;negative regulation of cellular metabolic process;0.000422388392416975!GO:0032508;DNA duplex unwinding;0.000428064599283445!GO:0032392;DNA geometric change;0.000428064599283445!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000428064599283445!GO:0005770;late endosome;0.000434860859914114!GO:0006284;base-excision repair;0.000439995696607188!GO:0030660;Golgi-associated vesicle membrane;0.000444965254136531!GO:0004576;oligosaccharyl transferase activity;0.000474924823657809!GO:0006310;DNA recombination;0.000487969593575071!GO:0044431;Golgi apparatus part;0.000498022598992395!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000507996502814401!GO:0043066;negative regulation of apoptosis;0.00050802760428154!GO:0004004;ATP-dependent RNA helicase activity;0.000530925365626031!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000548539423265524!GO:0031968;organelle outer membrane;0.00056827575619028!GO:0007088;regulation of mitosis;0.000577011932727342!GO:0006275;regulation of DNA replication;0.000585105681810816!GO:0048519;negative regulation of biological process;0.000592065736794199!GO:0031410;cytoplasmic vesicle;0.000622256917148512!GO:0005885;Arp2/3 protein complex;0.000626874939907376!GO:0030133;transport vesicle;0.000627319499728506!GO:0031970;organelle envelope lumen;0.000708197946889396!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000750872609394374!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000750872609394374!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000750872609394374!GO:0005048;signal sequence binding;0.000750872609394374!GO:0048471;perinuclear region of cytoplasm;0.000756596567822708!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00075800299870218!GO:0000922;spindle pole;0.000759010236066801!GO:0005684;U2-dependent spliceosome;0.000760021962557703!GO:0000082;G1/S transition of mitotic cell cycle;0.000762132011336195!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000784761676981579!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000784761676981579!GO:0019867;outer membrane;0.000838238953612088!GO:0009165;nucleotide biosynthetic process;0.000853402981856296!GO:0018196;peptidyl-asparagine modification;0.000853402981856296!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000853402981856296!GO:0007006;mitochondrial membrane organization and biogenesis;0.000880369178032224!GO:0005758;mitochondrial intermembrane space;0.000925301266843675!GO:0044440;endosomal part;0.000938427990387925!GO:0010008;endosome membrane;0.000938427990387925!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000938427990387925!GO:0006270;DNA replication initiation;0.00103201762621552!GO:0006268;DNA unwinding during replication;0.00103255638749563!GO:0050662;coenzyme binding;0.00104475299029601!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00105959152671504!GO:0006818;hydrogen transport;0.00111381221642186!GO:0051920;peroxiredoxin activity;0.00118040329548206!GO:0046474;glycerophospholipid biosynthetic process;0.00133666529632401!GO:0048500;signal recognition particle;0.00135432429801417!GO:0005741;mitochondrial outer membrane;0.00139914656228446!GO:0045045;secretory pathway;0.00143040773193918!GO:0006338;chromatin remodeling;0.00143445542507105!GO:0005637;nuclear inner membrane;0.0014506708514483!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00147300126857337!GO:0006355;regulation of transcription, DNA-dependent;0.00150948298266516!GO:0006405;RNA export from nucleus;0.00156151333607342!GO:0030659;cytoplasmic vesicle membrane;0.00159927648336343!GO:0043067;regulation of programmed cell death;0.00164309774211601!GO:0051789;response to protein stimulus;0.00167338896038926!GO:0006986;response to unfolded protein;0.00167338896038926!GO:0012506;vesicle membrane;0.00167338896038926!GO:0044433;cytoplasmic vesicle part;0.00168642459123901!GO:0000049;tRNA binding;0.00170600558083859!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00170759512042317!GO:0015992;proton transport;0.00176936947492217!GO:0006289;nucleotide-excision repair;0.00177362079702878!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00186770487432645!GO:0032259;methylation;0.0019408500144516!GO:0042981;regulation of apoptosis;0.00195754461017803!GO:0008017;microtubule binding;0.00197712590255196!GO:0007010;cytoskeleton organization and biogenesis;0.00204465065914345!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00205777122881956!GO:0035258;steroid hormone receptor binding;0.00215255175208652!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00227214303927038!GO:0006891;intra-Golgi vesicle-mediated transport;0.00237996904972303!GO:0051087;chaperone binding;0.00239444631780555!GO:0008312;7S RNA binding;0.00239559732101977!GO:0008234;cysteine-type peptidase activity;0.00253513201053348!GO:0030134;ER to Golgi transport vesicle;0.00257503958311058!GO:0031072;heat shock protein binding;0.00257870595333257!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00260206853968953!GO:0031124;mRNA 3'-end processing;0.00263361343941099!GO:0009892;negative regulation of metabolic process;0.0026364836201275!GO:0006144;purine base metabolic process;0.00264856044640347!GO:0008022;protein C-terminus binding;0.00268575923369554!GO:0003711;transcription elongation regulator activity;0.00277019749962007!GO:0005769;early endosome;0.00291054466572016!GO:0033116;ER-Golgi intermediate compartment membrane;0.00292596077378995!GO:0046489;phosphoinositide biosynthetic process;0.00297181990562667!GO:0000819;sister chromatid segregation;0.00309624372840859!GO:0006595;polyamine metabolic process;0.00309624372840859!GO:0046483;heterocycle metabolic process;0.00314252979178117!GO:0051252;regulation of RNA metabolic process;0.00321997276037493!GO:0004527;exonuclease activity;0.00322094734391068!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00322425516936918!GO:0045047;protein targeting to ER;0.00322425516936918!GO:0032200;telomere organization and biogenesis;0.00330415611455274!GO:0000723;telomere maintenance;0.00330415611455274!GO:0000070;mitotic sister chromatid segregation;0.00343544049594409!GO:0016790;thiolester hydrolase activity;0.00345676865000079!GO:0043596;nuclear replication fork;0.00358441905908256!GO:0019783;small conjugating protein-specific protease activity;0.00366155865256448!GO:0000725;recombinational repair;0.00368482823062568!GO:0000724;double-strand break repair via homologous recombination;0.00368482823062568!GO:0019752;carboxylic acid metabolic process;0.00370493039382239!GO:0003702;RNA polymerase II transcription factor activity;0.00374475223134549!GO:0030127;COPII vesicle coat;0.00377371978911237!GO:0012507;ER to Golgi transport vesicle membrane;0.00377371978911237!GO:0048037;cofactor binding;0.00377783863088802!GO:0030027;lamellipodium;0.0038296681350383!GO:0022890;inorganic cation transmembrane transporter activity;0.00402907473801392!GO:0006082;organic acid metabolic process;0.00425237790669549!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00431639540426285!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00435454376259945!GO:0009451;RNA modification;0.00438463681808607!GO:0004843;ubiquitin-specific protease activity;0.0044971185798767!GO:0016481;negative regulation of transcription;0.00455036679966163!GO:0000339;RNA cap binding;0.00457325181110523!GO:0042393;histone binding;0.00458675913610246!GO:0004518;nuclease activity;0.00460534942871074!GO:0016584;nucleosome positioning;0.00490556522462175!GO:0051287;NAD binding;0.00505253264171282!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00521121667535024!GO:0065007;biological regulation;0.00523660315757743!GO:0004003;ATP-dependent DNA helicase activity;0.00525333532166653!GO:0043414;biopolymer methylation;0.00530957958769646!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00574102194411471!GO:0015002;heme-copper terminal oxidase activity;0.00574102194411471!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00574102194411471!GO:0004129;cytochrome-c oxidase activity;0.00574102194411471!GO:0030663;COPI coated vesicle membrane;0.0058200888417496!GO:0030126;COPI vesicle coat;0.0058200888417496!GO:0042158;lipoprotein biosynthetic process;0.0058200888417496!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00595288521169984!GO:0000096;sulfur amino acid metabolic process;0.00608842148225647!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00628121846232037!GO:0006378;mRNA polyadenylation;0.00628208672582432!GO:0006611;protein export from nucleus;0.00646790380301375!GO:0009112;nucleobase metabolic process;0.00657986746969453!GO:0004221;ubiquitin thiolesterase activity;0.0067808723089879!GO:0019899;enzyme binding;0.00683929079131996!GO:0006520;amino acid metabolic process;0.00697778130297935!GO:0030521;androgen receptor signaling pathway;0.00710608671623216!GO:0000792;heterochromatin;0.00736296165801055!GO:0008139;nuclear localization sequence binding;0.00773281069691015!GO:0003725;double-stranded RNA binding;0.00791543038853156!GO:0000139;Golgi membrane;0.00797346920220432!GO:0008180;signalosome;0.00804581946867703!GO:0006497;protein amino acid lipidation;0.00811643241125312!GO:0030118;clathrin coat;0.00819049019337301!GO:0031123;RNA 3'-end processing;0.00820047005782575!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00820047005782575!GO:0044450;microtubule organizing center part;0.00836106513268168!GO:0000209;protein polyubiquitination;0.0084512738425614!GO:0006730;one-carbon compound metabolic process;0.00857051858013231!GO:0000781;chromosome, telomeric region;0.00865122357545179!GO:0006740;NADPH regeneration;0.00916567334008439!GO:0006098;pentose-phosphate shunt;0.00916567334008439!GO:0043488;regulation of mRNA stability;0.0092214631034948!GO:0043487;regulation of RNA stability;0.0092214631034948!GO:0005669;transcription factor TFIID complex;0.00924745933891306!GO:0016272;prefoldin complex;0.00931501896111175!GO:0030176;integral to endoplasmic reticulum membrane;0.00939001681383619!GO:0008632;apoptotic program;0.0102289542945641!GO:0019843;rRNA binding;0.0103800120108951!GO:0005832;chaperonin-containing T-complex;0.0105383607167949!GO:0043601;nuclear replisome;0.0108965936039359!GO:0030894;replisome;0.0108965936039359!GO:0042802;identical protein binding;0.0109029201802846!GO:0046966;thyroid hormone receptor binding;0.0110367715615036!GO:0046426;negative regulation of JAK-STAT cascade;0.0113383275772529!GO:0005791;rough endoplasmic reticulum;0.0115120125048358!GO:0030137;COPI-coated vesicle;0.0118643825051294!GO:0006007;glucose catabolic process;0.012218718491037!GO:0043284;biopolymer biosynthetic process;0.0125028168115213!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0128687209399812!GO:0016407;acetyltransferase activity;0.0130026791440691!GO:0000910;cytokinesis;0.013078382279974!GO:0007004;telomere maintenance via telomerase;0.0131482669460912!GO:0000152;nuclear ubiquitin ligase complex;0.0132550496137041!GO:0006672;ceramide metabolic process;0.0132608127742217!GO:0043022;ribosome binding;0.0133822213692277!GO:0003756;protein disulfide isomerase activity;0.0136010438219475!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0136010438219475!GO:0006376;mRNA splice site selection;0.0137108900739388!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0137108900739388!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0137576908399321!GO:0033673;negative regulation of kinase activity;0.0138244967677567!GO:0006469;negative regulation of protein kinase activity;0.0138244967677567!GO:0031252;leading edge;0.0139627575396635!GO:0035267;NuA4 histone acetyltransferase complex;0.0141475769246418!GO:0046128;purine ribonucleoside metabolic process;0.0142221900384778!GO:0042278;purine nucleoside metabolic process;0.0142221900384778!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0142381394352999!GO:0030125;clathrin vesicle coat;0.0142381394352999!GO:0030665;clathrin coated vesicle membrane;0.0142381394352999!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0143109487056329!GO:0009303;rRNA transcription;0.0143465521363986!GO:0046467;membrane lipid biosynthetic process;0.0146828055714698!GO:0006220;pyrimidine nucleotide metabolic process;0.0148673301236844!GO:0003746;translation elongation factor activity;0.0148673301236844!GO:0005869;dynactin complex;0.0154508686849794!GO:0008276;protein methyltransferase activity;0.0155903983046078!GO:0004674;protein serine/threonine kinase activity;0.0161132123240493!GO:0030518;steroid hormone receptor signaling pathway;0.0172552482754898!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0173613295832953!GO:0030132;clathrin coat of coated pit;0.0175810591954482!GO:0006779;porphyrin biosynthetic process;0.0181143713039616!GO:0033014;tetrapyrrole biosynthetic process;0.0181143713039616!GO:0022406;membrane docking;0.0183023765080041!GO:0048278;vesicle docking;0.0183023765080041!GO:0048487;beta-tubulin binding;0.018524779944198!GO:0051348;negative regulation of transferase activity;0.018524779944198!GO:0043189;H4/H2A histone acetyltransferase complex;0.0188414839526385!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0190863499370254!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0190863499370254!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0190863499370254!GO:0046519;sphingoid metabolic process;0.0193596284321406!GO:0016569;covalent chromatin modification;0.0194664104282628!GO:0017166;vinculin binding;0.019734517715312!GO:0043130;ubiquitin binding;0.0205037543888111!GO:0032182;small conjugating protein binding;0.0205037543888111!GO:0030320;cellular monovalent inorganic anion homeostasis;0.020636876648865!GO:0055083;monovalent inorganic anion homeostasis;0.020636876648865!GO:0055064;chloride ion homeostasis;0.020636876648865!GO:0030644;cellular chloride ion homeostasis;0.020636876648865!GO:0006506;GPI anchor biosynthetic process;0.020636876648865!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.020636876648865!GO:0051540;metal cluster binding;0.0207702952852992!GO:0051536;iron-sulfur cluster binding;0.0207702952852992!GO:0004532;exoribonuclease activity;0.0212286572364514!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0212286572364514!GO:0019238;cyclohydrolase activity;0.0212500655006755!GO:0000123;histone acetyltransferase complex;0.0212832148161288!GO:0007021;tubulin folding;0.0214914928750269!GO:0005092;GDP-dissociation inhibitor activity;0.0237449172244391!GO:0046983;protein dimerization activity;0.0238835499307255!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0239136475281827!GO:0008287;protein serine/threonine phosphatase complex;0.0247402397505801!GO:0031577;spindle checkpoint;0.0249688979792352!GO:0008652;amino acid biosynthetic process;0.0249688979792352!GO:0006278;RNA-dependent DNA replication;0.025179499061314!GO:0045941;positive regulation of transcription;0.0258051000645703!GO:0006892;post-Golgi vesicle-mediated transport;0.0260330560950607!GO:0006505;GPI anchor metabolic process;0.0264606349023505!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0268130405592767!GO:0008538;proteasome activator activity;0.0270952771150371!GO:0006400;tRNA modification;0.0270952771150371!GO:0040029;regulation of gene expression, epigenetic;0.0271416406745723!GO:0031371;ubiquitin conjugating enzyme complex;0.027153292168772!GO:0005881;cytoplasmic microtubule;0.0272033001426688!GO:0000228;nuclear chromosome;0.0274750640863193!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0276831922550962!GO:0045039;protein import into mitochondrial inner membrane;0.0276831922550962!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0278216445140147!GO:0009081;branched chain family amino acid metabolic process;0.0278653687880935!GO:0000178;exosome (RNase complex);0.0281419787144737!GO:0004722;protein serine/threonine phosphatase activity;0.0289837465129921!GO:0008415;acyltransferase activity;0.0291869933919387!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0293369914990263!GO:0005663;DNA replication factor C complex;0.0295110692459811!GO:0003887;DNA-directed DNA polymerase activity;0.0298449208234098!GO:0006596;polyamine biosynthetic process;0.0298898084673259!GO:0045893;positive regulation of transcription, DNA-dependent;0.0300395721958359!GO:0051128;regulation of cellular component organization and biogenesis;0.030540605905141!GO:0005680;anaphase-promoting complex;0.030577264602506!GO:0000726;non-recombinational repair;0.0309254534807324!GO:0044454;nuclear chromosome part;0.0314021918058664!GO:0007050;cell cycle arrest;0.0316416971657386!GO:0006904;vesicle docking during exocytosis;0.032242346686268!GO:0001832;blastocyst growth;0.0322693986844338!GO:0043631;RNA polyadenylation;0.0324670410009654!GO:0046982;protein heterodimerization activity;0.0324843145161163!GO:0009119;ribonucleoside metabolic process;0.0325429606509887!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0330193134625474!GO:0000097;sulfur amino acid biosynthetic process;0.0334494880229309!GO:0030140;trans-Golgi network transport vesicle;0.0347526364179996!GO:0005784;translocon complex;0.0352382572634385!GO:0005875;microtubule associated complex;0.0352649012511454!GO:0051539;4 iron, 4 sulfur cluster binding;0.0354952780716348!GO:0065009;regulation of a molecular function;0.0358898882328357!GO:0004523;ribonuclease H activity;0.0358898882328357!GO:0006783;heme biosynthetic process;0.0360815210366476!GO:0043624;cellular protein complex disassembly;0.0373409958947338!GO:0009066;aspartate family amino acid metabolic process;0.0374817049040581!GO:0045892;negative regulation of transcription, DNA-dependent;0.0374817049040581!GO:0030119;AP-type membrane coat adaptor complex;0.037811391849399!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0378741076829175!GO:0007264;small GTPase mediated signal transduction;0.0379943277521784!GO:0000118;histone deacetylase complex;0.0385090829932916!GO:0030911;TPR domain binding;0.0387465530398726!GO:0022884;macromolecule transmembrane transporter activity;0.0389003666310017!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0389003666310017!GO:0008320;protein transmembrane transporter activity;0.0390728116097336!GO:0016585;chromatin remodeling complex;0.0390728116097336!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0395840933201456!GO:0006308;DNA catabolic process;0.0399244873442392!GO:0030384;phosphoinositide metabolic process;0.0405518124731907!GO:0031625;ubiquitin protein ligase binding;0.0406244807444457!GO:0016746;transferase activity, transferring acyl groups;0.0406377678975703!GO:0051053;negative regulation of DNA metabolic process;0.0408482206828168!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.041612861830552!GO:0012510;trans-Golgi network transport vesicle membrane;0.041612861830552!GO:0042026;protein refolding;0.0416910135780454!GO:0017134;fibroblast growth factor binding;0.0420918979950338!GO:0006778;porphyrin metabolic process;0.0430239217808815!GO:0033013;tetrapyrrole metabolic process;0.0430239217808815!GO:0032940;secretion by cell;0.0443478432016896!GO:0006301;postreplication repair;0.0445495936018813!GO:0008097;5S rRNA binding;0.0452218278442286!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0452830095135949!GO:0004300;enoyl-CoA hydratase activity;0.0453462591312501!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0453904511564147!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0453904511564147!GO:0045815;positive regulation of gene expression, epigenetic;0.0453904511564147!GO:0005773;vacuole;0.0459872808289033!GO:0031529;ruffle organization and biogenesis;0.0460892640241274!GO:0031570;DNA integrity checkpoint;0.0468365139841472!GO:0006519;amino acid and derivative metabolic process;0.047209346349421!GO:0009113;purine base biosynthetic process;0.0477068172750798!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0477932353254657!GO:0010257;NADH dehydrogenase complex assembly;0.0477932353254657!GO:0033108;mitochondrial respiratory chain complex assembly;0.0477932353254657!GO:0008537;proteasome activator complex;0.048295971497929!GO:0031902;late endosome membrane;0.0483483196279408!GO:0042769;DNA damage response, detection of DNA damage;0.0484685178619757!GO:0009067;aspartate family amino acid biosynthetic process;0.0495118935007943
|sample_id=10787
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=neck
|top_motifs=VSX1,2:2.88606492891;PDX1:2.80725612372;POU1F1:2.21156246466;NKX2-1,4:2.0746203796;PBX1:1.9818727196;PITX1..3:1.91727403365;RORA:1.86730468971;PAX4:1.8596927012;PAX8:1.80164552664;NRF1:1.63137160693;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.59019033304;HOX{A4,D4}:1.58860315789;POU3F1..4:1.55775628757;E2F1..5:1.46040508349;EN1,2:1.41088012344;NFY{A,B,C}:1.40100275321;IKZF2:1.39029573507;CDX1,2,4:1.36568331751;TOPORS:1.36176933494;ONECUT1,2:1.31944772463;HOX{A5,B5}:1.31348423062;YY1:1.31149386191;FOXP1:1.27178832496;FOXD3:1.24234449868;RFX1:1.19097483503;HOX{A6,A7,B6,B7}:1.15054853896;GFI1:1.13244695363;ZNF384:1.12553807584;PRRX1,2:1.1078293894;AIRE:1.07190481802;ZNF143:1.02581482176;ZBTB16:1.02397558631;RFX2..5_RFXANK_RFXAP:1.02093277679;DBP:1.00879205062;FOXQ1:0.999579405582;ELK1,4_GABP{A,B1}:0.996812496271;FOXA2:0.946123046698;TEF:0.927238223593;NKX2-3_NKX2-5:0.920528487354;SOX{8,9,10}:0.892069456105;POU2F1..3:0.878170029641;MYB:0.876877261323;CUX2:0.848422551774;LEF1_TCF7_TCF7L1,2:0.771867883883;CDC5L:0.757145124636;FOXP3:0.752004206979;CRX:0.740947668625;ALX1:0.725916710098;HOXA9_MEIS1:0.722747222933;ADNP_IRX_SIX_ZHX:0.705946940363;ARID5B:0.695709306842;PAX3,7:0.684685754663;ZIC1..3:0.659461604887;MZF1:0.619816914236;NR5A1,2:0.552035759972;ZBTB6:0.53405085956;AHR_ARNT_ARNT2:0.514868089181;OCT4_SOX2{dimer}:0.509618307888;STAT5{A,B}:0.505965696181;RXR{A,B,G}:0.466653863921;GTF2A1,2:0.459943611339;NR3C1:0.450820602865;EVI1:0.445113327516;RXRA_VDR{dimer}:0.440157595818;RBPJ:0.361282640381;BREu{core}:0.353775729589;TGIF1:0.344081105023;NKX3-1:0.342814736505;HIF1A:0.339291795818;SOX17:0.338556978774;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.323288643928;HSF1,2:0.279097115927;PATZ1:0.240248804942;IKZF1:0.200151285677;POU5F1:0.168594434879;GFI1B:0.134719449644;POU6F1:0.133809849222;LHX3,4:0.125592443197;HMGA1,2:0.116896085084;DMAP1_NCOR{1,2}_SMARC:0.112475074731;HAND1,2:0.108636735168;CREB1:0.105132546791;NKX3-2:0.0968220585123;ZEB1:0.0900486374116;SNAI1..3:0.0357135138051;HNF4A_NR2F1,2:0.0330031063993;NKX6-1,2:0.0155705216034;FOXM1:-0.000957755540653;NANOG:-0.0123550215041;T:-0.0192207202919;TLX1..3_NFIC{dimer}:-0.0383922412789;NR6A1:-0.0396779571978;TFDP1:-0.0413500516363;GATA6:-0.04799521336;PAX1,9:-0.0593031527182;HNF1A:-0.0918613850144;PPARG:-0.094693120996;AR:-0.106454028834;UFEwm:-0.137714214717;FOXL1:-0.177972386139;KLF4:-0.186727990124;RUNX1..3:-0.20338476031;HIC1:-0.217771972888;EGR1..3:-0.230502219907;TP53:-0.246726598007;ATF5_CREB3:-0.252556778831;ZFP161:-0.316285882138;TLX2:-0.319004707646;GTF2I:-0.323697031949;XCPE1{core}:-0.330957549572;MEF2{A,B,C,D}:-0.338042425889;EBF1:-0.346637447965;REST:-0.368315258072;SREBF1,2:-0.371084992149;NFKB1_REL_RELA:-0.380214069679;NFE2L2:-0.380888299632;TEAD1:-0.396060757181;SPIB:-0.401851717528;ATF4:-0.40551564578;FOSL2:-0.410494472113;NKX2-2,8:-0.423351971355;BACH2:-0.425335594971;MYBL2:-0.426380693042;NHLH1,2:-0.438046646233;FOX{I1,J2}:-0.459180923898;STAT1,3:-0.492931867323;HBP1_HMGB_SSRP1_UBTF:-0.517116643722;IRF7:-0.518852236512;IRF1,2:-0.533534636314;ALX4:-0.548414406469;GATA4:-0.560774270857;PAX6:-0.569507336921;FOS_FOS{B,L1}_JUN{B,D}:-0.570758926284;JUN:-0.57641537679;MED-1{core}:-0.577486101992;ELF1,2,4:-0.579143932235;FOX{D1,D2}:-0.581660775893;MTF1:-0.587142102087;SOX5:-0.613474253004;NANOG{mouse}:-0.63702453906;TBP:-0.64073899907;STAT2,4,6:-0.641384647526;MYFfamily:-0.647526999687;FOXN1:-0.66216469701;bHLH_family:-0.693615183681;PRDM1:-0.710688863146;SPI1:-0.727644283583;LMO2:-0.728347037916;PAX5:-0.74118879731;NFIX:-0.761879167817;RREB1:-0.771992611143;HLF:-0.776695592743;ZNF148:-0.784695719242;SOX2:-0.797297767917;TAL1_TCF{3,4,12}:-0.79890749103;HES1:-0.806441747972;TFAP2{A,C}:-0.807490461684;NFIL3:-0.81253617614;SPZ1:-0.820918091057;MAZ:-0.83756137323;ATF6:-0.852297203906;CEBPA,B_DDIT3:-0.864398128411;XBP1:-0.87180287944;NFE2:-0.871916634494;ETS1,2:-0.877271794197;ESRRA:-0.889472205244;SMAD1..7,9:-0.890864152101;SP1:-0.911271345786;SRF:-0.918251025385;GCM1,2:-0.928441482301;FOXO1,3,4:-0.951451078113;GLI1..3:-0.976242879087;ZNF238:-1.02630449057;FOX{F1,F2,J1}:-1.02792376188;ATF2:-1.04983633333;ZNF423:-1.05701567139;HMX1:-1.07089630244;PAX2:-1.08165772039;MYOD1:-1.14755228748;TFAP2B:-1.15105518994;BPTF:-1.15453526341;EP300:-1.17302214897;NR1H4:-1.22469461857;ESR1:-1.2310461728;NFE2L1:-1.27882824428;GZF1:-1.27890411681;MTE{core}:-1.35391004757;MAFB:-1.40138600637;NFATC1..3:-1.48611190746;TFCP2:-1.54437788314;TBX4,5:-1.59178616813;TFAP4:-1.86052145023
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10787-110H4;search_select_hide=table117:FF:10787-110H4
}}
}}

Latest revision as of 15:04, 3 June 2020

Name:rhabdomyosarcoma cell line:KYM-1
Species:Human (Homo sapiens)
Library ID:CNhs11877
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueneck
dev stageNA
sexfemale
age9 months
cell typeunclassifiable
cell lineKYM-1
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005269
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11877 CAGE DRX007993 DRR008865
Accession ID Hg19

Library idBAMCTSS
CNhs11877 DRZ000290 DRZ001675
Accession ID Hg38

Library idBAMCTSS
CNhs11877 DRZ011640 DRZ013025
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005269
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10083 RNA-Seq DRX057140 DRR062899
Accession ID Hg19

Library idBAMCTSS
RDhi10083 DRZ007975


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0.841
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.316
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.579
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0025
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0443
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.17
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0791
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.131
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0359
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.46
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0288
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0146
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0285
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.57
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.00486
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.166
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11877

Jaspar motifP-value
MA0002.23.66828e-4
MA0003.10.134
MA0004.10.648
MA0006.10.169
MA0007.10.47
MA0009.10.417
MA0014.10.747
MA0017.10.44
MA0018.20.437
MA0019.10.00286
MA0024.12.93344e-5
MA0025.10.0761
MA0027.10.256
MA0028.10.00393
MA0029.10.968
MA0030.10.0929
MA0031.10.136
MA0035.20.23
MA0038.10.0914
MA0039.20.956
MA0040.10.0839
MA0041.10.258
MA0042.10.487
MA0043.10.29
MA0046.10.235
MA0047.20.275
MA0048.10.256
MA0050.10.164
MA0051.10.215
MA0052.18.80084e-4
MA0055.10.0105
MA0057.10.527
MA0058.10.745
MA0059.10.368
MA0060.11.84505e-9
MA0061.10.0579
MA0062.20.0368
MA0065.20.532
MA0066.10.589
MA0067.10.151
MA0068.10.839
MA0069.10.934
MA0070.10.223
MA0071.10.499
MA0072.10.525
MA0073.10.483
MA0074.10.573
MA0076.10.00427
MA0077.10.115
MA0078.10.132
MA0079.20.218
MA0080.23.6022e-11
MA0081.10.0615
MA0083.14.86893e-4
MA0084.10.106
MA0087.10.0964
MA0088.10.00724
MA0090.10.173
MA0091.10.0228
MA0092.10.305
MA0093.10.549
MA0099.28.20581e-12
MA0100.10.0624
MA0101.10.33
MA0102.22.83908e-4
MA0103.10.935
MA0104.20.0514
MA0105.10.584
MA0106.10.819
MA0107.10.0911
MA0108.22.86017e-4
MA0111.10.851
MA0112.20.0364
MA0113.10.0545
MA0114.10.148
MA0115.10.0819
MA0116.10.37
MA0117.10.715
MA0119.10.674
MA0122.10.824
MA0124.10.463
MA0125.10.616
MA0131.10.0557
MA0135.10.0328
MA0136.12.30547e-8
MA0137.20.183
MA0138.20.215
MA0139.10.408
MA0140.10.537
MA0141.10.751
MA0142.10.813
MA0143.10.0269
MA0144.10.0489
MA0145.10.0248
MA0146.10.782
MA0147.10.0127
MA0148.10.455
MA0149.10.45
MA0150.10.00116
MA0152.10.558
MA0153.10.00515
MA0154.10.278
MA0155.10.517
MA0156.11.92145e-4
MA0157.10.0143
MA0159.10.782
MA0160.10.52
MA0162.10.166
MA0163.10.26
MA0164.10.788
MA0258.10.279
MA0259.10.0199



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11877

Novel motifP-value
10.665
100.467
1000.261
1010.994
1020.993
1030.168
1040.683
1050.577
1061.03178e-4
1070.0302
1080.262
1090.897
110.768
1100.326
1110.847
1120.164
1130.0774
1140.381
1150.596
1160.442
1170.0612
1180.465
1190.681
120.344
1200.815
1210.215
1220.286
1230.0301
1240.627
1250.488
1260.862
1270.216
1280.122
1290.117
130.398
1300.652
1310.14
1320.479
1330.886
1340.549
1350.0675
1360.731
1370.282
1380.377
1390.252
140.315
1400.336
1410.529
1420.388
1430.0172
1440.873
1450.874
1460.484
1470.377
1480.174
1490.0229
150.424
1500.968
1510.123
1520.00677
1530.822
1540.777
1550.995
1560.708
1570.651
1580.192
1590.223
160.844
1600.975
1610.115
1620.395
1630.919
1640.438
1650.0429
1660.261
1670.57
1680.101
1690.184
170.333
180.166
190.499
20.109
200.278
210.72
220.261
230.00113
240.294
250.711
260.451
270.102
280.831
290.596
30.437
300.0996
310.721
320.105
330.795
340.24
350.589
360.975
370.587
380.625
390.291
40.798
400.857
410.0354
420.137
430.189
440.972
450.103
460.838
470.681
480.938
490.817
50.259
500.53
510.59
520.0375
530.844
540.483
550.625
560.624
570.297
580.273
590.0645
60.397
600.011
610.818
620.205
630.269
640.698
650.379
660.0468
670.988
680.148
690.809
70.802
700.263
710.751
720.576
730.0862
740.47
750.179
760.696
770.344
780.442
790.069
80.807
800.0336
810.767
820.058
830.286
840.479
850.0879
860.996
870.89
880.821
890.445
90.0434
900.395
910.168
920.213
930.217
940.311
950.184
960.671
970.71
980.83
990.665



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11877


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0102267 (rhabdomyosarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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