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(Created page with "{{f5samples |id=FF:11396-118D1 |name=Smooth Muscle Cells - Colonic, donor3 |sample_id=11396 |rna_tube_id=118D1 |rna_box=118 |rna_position=D1 |sample_cell_lot=N/A |samp...")
 
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{{f5samples
{{f5samples
|id=FF:11396-118D1
|DRA_sample_Accession=CAGE@SAMD00004795
|name=Smooth Muscle Cells - Colonic, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004795
|sample_id=11396
|accession_numbers=CAGE;DRX008485;DRR009357;DRZ000782;DRZ002167;DRZ012132;DRZ013517
|rna_tube_id=118D1
|accession_numbers_RNASeq=sRNA-Seq;DRX037076;DRR041442;DRZ007084
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001155,UBERON:0001135,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0001555,UBERON:0000059,UBERON:0002204,UBERON:0005409,UBERON:0000383
|rna_position=D1
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002504,CL:1000279,CL:1000280
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=1147.00000
|rna_catalog_number=SC2945
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=colon
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.40200
|sample_note=
|profile_hcage=CNhs12007,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10006,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002504,CL:1000280
|ancestors_in_anatomy_facet=UBERON:0000059,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000119,UBERON:0000160,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001007,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001135,UBERON:0001155,UBERON:0001555,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004290,UBERON:0004921,UBERON:0005291,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000180,FF:0000181
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.39!244.34!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.78!71.98!FOXF1;;chr4:174451370..174451387,-!p1@HAND2!1.45!26.86!HAND2;;chr15:42749722..42749739,-!p2@ZFP106!1.43!46.06!ZFP106;;chr5:134369879..134369898,-!p2@PITX1!1.39!23.80!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.29!28.51!PITX1;;chr7:27224842..27224872,-!p1@HOXA11!1.27!17.55!HOXA11;;chr11:46299199..46299233,+!p1@CREB3L1!1.26!87.77!CREB3L1;;chr7:27192185..27192209,-!p1@HOXA3!1.18!14.26!HOXA3;;chr2:185463247..185463263,+!p1@ZNF804A!1.17!24.27!ZNF804A;;chr7:27224795..27224840,-!p2@HOXA11!1.17!13.67!HOXA11;;chr5:92918919..92918942,+!p1@NR2F1!1.15!58.79!NR2F1;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.19!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.28!TWIST1;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.75!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!1.07!10.84!HOXB6;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.32!TCF12;;chr19:46801639..46801699,+!p1@HIF3A!1.05!10.13!HIF3A;;chr11:46299539..46299620,+!p2@CREB3L1!1.01!15.90!CREB3L1;;chr10:101292684..101292706,+!p1@NKX2-3!1.01!9.31!NKX2-3;;chr7:27205136..27205164,-!p1@HOXA9!1.01!9.19!HOXA9;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.41!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!0.95!7.89!EBF2;;chr2:176969228..176969260,+!p1@HOXD11!0.93!7.42!HOXD11;;chr19:45260775..45260838,+!p5@BCL3!0.92!9.66!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.91!7.89!NR2F1;;chr14:62162285..62162296,+!p3@HIF1A!0.89!36.76!HIF1A;;chr17:46622114..46622138,-!p4@HOXB2!0.89!10.60!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.89!7.89!BNC1;;chr17:46667594..46667619,-!p1@HOXB3!0.89!6.72!HOXB3;;chr7:27205106..27205134,-!p2@HOXA9!0.88!6.60!HOXA9;;chr12:66218836..66218888,+!p1@HMGA2!0.87!64.09!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!0.87!6.36!SOX11;;chr2:66662281..66662308,+!p1@MEIS1!0.86!22.97!MEIS1;;chr8:49833948..49833973,-!p2@SNAI2!0.85!41.47!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.38!TWIST2;;chr14:62162258..62162269,+!p2@HIF1A!0.84!60.20!HIF1A;;chr15:37392724..37392757,-!p1@MEIS2!0.84!28.98!MEIS2;;chr7:27213893..27213954,-!p1@HOXA10!0.84!5.89!HOXA10;;chr12:66218212..66218244,+!p5@HMGA2!0.83!8.60!HMGA2;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.72!HOXB2;;chr17:1959369..1959388,+!p2@HIC1!0.80!14.96!HIC1;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.14!GATA6;;chr17:59477233..59477263,+!p1@TBX2!0.76!15.79!TBX2;;chr2:121493425..121493474,+!p1@GLI2!0.76!11.19!GLI2;;chr9:16870659..16870675,-!p2@BNC2!0.76!6.01!BNC2;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.38!SNAI2;;chr2:19558373..19558392,-!p1@OSR1!0.73!12.96!OSR1;;chr2:66662249..66662267,+!p2@MEIS1!0.72!18.14!MEIS1;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.55!TWIST1;;chr17:46675558..46675577,-!p2@HOXB6!0.72!4.24!HOXB6;;chr2:176969179..176969226,+!p2@HOXD11!0.72!4.24!HOXD11;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.60!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.70!4.01!EBF3;;chr9:16870710..16870763,-!p1@BNC2!0.69!7.19!BNC2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.48!TCF4;;chr20:50721803..50721857,-!p2@ZFP64!0.68!6.36!ZFP64;;chr7:27196267..27196311,-!p1@HOXA7!0.68!3.77!HOXA7;;chr2:239756739..239756755,+!p2@TWIST2!0.67!6.72!TWIST2;;chr17:46675420..46675465,-!p3@HOXB6!0.67!4.36!HOXB6;;chr5:92918894..92918912,+!p2@NR2F1!0.66!13.19!NR2F1;;chr17:59477275..59477286,+!p3@TBX2!0.66!4.95!TBX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.66!3.89!GLIS1;;chr11:46299443..46299459,+!p4@CREB3L1!0.66!3.53!CREB3L1;;chr8:106330656..106330684,+!p1@ZFPM2!0.65!10.25!ZFPM2;;chr11:61520075..61520136,+!p1@C11orf9!0.65!8.13!C11orf9;;chr5:92919375..92919438,+!p6@NR2F1!0.65!3.77!NR2F1;;chr12:66218904..66218913,+!p11@HMGA2!0.65!3.42!HMGA2;;chr1:164528410..164528428,+!p1@PBX1!0.64!29.45!PBX1;;chr17:59477197..59477212,+!p2@TBX2!0.64!6.36!TBX2;;chr18:19749386..19749404,+!p2@GATA6!0.64!5.18!GATA6;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.95!HOXB7;;chr17:1958388..1958404,+!p1@HIC1!0.63!24.50!HIC1;;chr7:42276787..42276815,-!p1@GLI3!0.63!9.90!GLI3;;chr1:164528445..164528459,+!p2@PBX1!0.62!11.31!PBX1;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.78!HOXB2;;chr12:66218573..66218596,+!p7@HMGA2!0.62!5.07!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.01!TBX18;;chr17:46622205..46622218,-!p3@HOXB2!0.62!3.77!HOXB2;;chr12:24715376..24715432,-!p1@SOX5!0.61!4.12!SOX5;;chr17:46667628..46667642,-!p2@HOXB3!0.61!3.06!HOXB3;;chr6:45390025..45390076,+!p2@RUNX2!0.60!8.25!RUNX2;;chr2:66662895..66662907,+!p3@MEIS1!0.59!3.77!MEIS1;;chr14:62162224..62162254,+!p1@HIF1A!0.58!500.70!HIF1A;;chr2:121493492..121493537,+!p2@GLI2!0.58!5.18!GLI2;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.36!HOXB7;;chr15:37392094..37392116,-!p6@MEIS2!0.58!3.65!MEIS2;;chr4:174451350..174451363,-!p3@HAND2!0.58!2.83!HAND2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.58!2.83!PEG3;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.73!TOX2;;chr5:92919100..92919135,+!p3@NR2F1!0.57!3.42!NR2F1;;chr11:32457075..32457095,-!p1@WT1!0.57!2.71!WT1;;chr8:48650715..48650735,-!p1@CEBPD!0.5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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000280;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
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|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor3.CNhs12007.11396-118D1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Colonic%252c%2520donor3.CNhs12007.11396-118D1.hg38.nobarcode.ctss.bed.gz
|id=FF:11396-118D1
|is_a=EFO:0002091;;FF:0000181
|is_obsolete=
|library_id=CNhs12007
|library_id_phase_based=2:CNhs12007
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11396
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.TAGCTT.11396
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11396
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.TAGCTT.11396
|name=Smooth Muscle Cells - Colonic, donor3
|namespace=FANTOM5
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|rna_box=118
|rna_catalog_number=SC2945
|rna_concentration=0.402
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1147
|rna_od260/230=
|rna_od260/280=
|rna_position=D1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118D1
|rna_weight_ug=10
|rnaseq_library_id=SRhi10006.TAGCTT
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.63081029982322e-247!GO:0005737;cytoplasm;8.40918744370436e-206!GO:0043226;organelle;1.75960710776993e-192!GO:0043231;intracellular membrane-bound organelle;3.01078007561825e-192!GO:0043229;intracellular organelle;3.01078007561825e-192!GO:0043227;membrane-bound organelle;6.47708411430303e-192!GO:0044422;organelle part;1.57812661322274e-150!GO:0044444;cytoplasmic part;4.58013400992812e-149!GO:0044446;intracellular organelle part;4.69590266865371e-149!GO:0032991;macromolecular complex;4.29307872109308e-99!GO:0044238;primary metabolic process;3.45158666691777e-90!GO:0044237;cellular metabolic process;4.30796419506816e-90!GO:0030529;ribonucleoprotein complex;1.9819854218953e-89!GO:0043170;macromolecule metabolic process;6.95037888821111e-79!GO:0005515;protein binding;5.89630982863903e-77!GO:0005739;mitochondrion;3.22703209556356e-75!GO:0043233;organelle lumen;4.57599490132708e-74!GO:0031974;membrane-enclosed lumen;4.57599490132708e-74!GO:0044428;nuclear part;1.07376338154707e-71!GO:0005634;nucleus;4.37706553084323e-68!GO:0003723;RNA binding;1.75058279878601e-66!GO:0005840;ribosome;4.41045984738283e-56!GO:0031090;organelle membrane;1.21556745949471e-55!GO:0019538;protein metabolic process;1.99714174081143e-53!GO:0016043;cellular component organization and biogenesis;3.32360968395046e-52!GO:0006412;translation;2.55831893587861e-51!GO:0044429;mitochondrial part;1.30491385407061e-49!GO:0003735;structural constituent of ribosome;7.73030360795655e-49!GO:0043234;protein complex;9.74222573028622e-49!GO:0044260;cellular macromolecule metabolic process;9.12385930083243e-48!GO:0009058;biosynthetic process;1.14023170925373e-47!GO:0044267;cellular protein metabolic process;7.37741459666724e-47!GO:0006396;RNA processing;1.07744768512303e-46!GO:0031967;organelle envelope;4.35860645262252e-46!GO:0031975;envelope;9.50186663250571e-46!GO:0015031;protein transport;4.21824925440662e-44!GO:0033036;macromolecule localization;3.04772763807278e-43!GO:0044249;cellular biosynthetic process;3.21980192097702e-43!GO:0033279;ribosomal subunit;9.01164036891715e-42!GO:0031981;nuclear lumen;1.67588387773141e-41!GO:0045184;establishment of protein localization;2.11022331330834e-40!GO:0009059;macromolecule biosynthetic process;3.11552908324254e-40!GO:0008104;protein localization;4.51261643486505e-40!GO:0005829;cytosol;7.41343388461711e-40!GO:0043283;biopolymer metabolic process;1.05941929571077e-39!GO:0046907;intracellular transport;2.81067662723765e-36!GO:0016071;mRNA metabolic process;2.84192693652785e-36!GO:0065003;macromolecular complex assembly;1.20097675785035e-34!GO:0010467;gene expression;1.39199320421089e-34!GO:0006996;organelle organization and biogenesis;1.90437865137596e-34!GO:0008380;RNA splicing;5.5689667317511e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.99851556610979e-34!GO:0043228;non-membrane-bound organelle;3.70413035193169e-33!GO:0043232;intracellular non-membrane-bound organelle;3.70413035193169e-33!GO:0005740;mitochondrial envelope;4.91136830044132e-32!GO:0006397;mRNA processing;3.42899433481946e-31!GO:0022607;cellular component assembly;3.74212122801331e-31!GO:0031966;mitochondrial membrane;3.66620407684066e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.03796751680736e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.76161037962444e-30!GO:0019866;organelle inner membrane;1.12487846790817e-29!GO:0006886;intracellular protein transport;1.67081983737209e-29!GO:0005743;mitochondrial inner membrane;1.06054540929141e-27!GO:0006259;DNA metabolic process;2.98935363253479e-27!GO:0005654;nucleoplasm;2.23093313616645e-25!GO:0007049;cell cycle;1.06002705899292e-24!GO:0012505;endomembrane system;2.6339475462026e-24!GO:0005681;spliceosome;6.71514547604472e-24!GO:0044445;cytosolic part;1.19962152301916e-23!GO:0051649;establishment of cellular localization;1.41029538300305e-23!GO:0051641;cellular localization;2.63876405999496e-23!GO:0005783;endoplasmic reticulum;3.45483784790126e-23!GO:0006119;oxidative phosphorylation;4.49092179682359e-23!GO:0000166;nucleotide binding;7.3850378316868e-23!GO:0015934;large ribosomal subunit;2.21243921074114e-22!GO:0031980;mitochondrial lumen;1.1437873161657e-21!GO:0005759;mitochondrial matrix;1.1437873161657e-21!GO:0044455;mitochondrial membrane part;3.40723003289357e-21!GO:0006457;protein folding;5.38813873409796e-21!GO:0015935;small ribosomal subunit;1.74023903658695e-20!GO:0044451;nucleoplasm part;2.82939942136221e-20!GO:0048770;pigment granule;6.93963826591802e-20!GO:0042470;melanosome;6.93963826591802e-20!GO:0016462;pyrophosphatase activity;4.95717130115919e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.86592408242521e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;9.68306446186388e-19!GO:0022402;cell cycle process;1.62740657933889e-18!GO:0044432;endoplasmic reticulum part;2.22564852206859e-18!GO:0005746;mitochondrial respiratory chain;2.5773591767361e-18!GO:0017111;nucleoside-triphosphatase activity;3.05559515849325e-18!GO:0000278;mitotic cell cycle;7.08258387642704e-18!GO:0003676;nucleic acid binding;1.05897262562006e-17!GO:0051186;cofactor metabolic process;1.55479622237626e-17!GO:0022618;protein-RNA complex assembly;2.38736955768074e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.21800947601882e-17!GO:0005794;Golgi apparatus;8.67987281405824e-17!GO:0005730;nucleolus;1.2204517157895e-16!GO:0005761;mitochondrial ribosome;2.796516210369e-16!GO:0000313;organellar ribosome;2.796516210369e-16!GO:0043285;biopolymer catabolic process;3.81384277680356e-16!GO:0000502;proteasome complex (sensu Eukaryota);3.98996685104558e-16!GO:0016874;ligase activity;5.66014628017612e-16!GO:0006974;response to DNA damage stimulus;5.91227450015587e-16!GO:0050136;NADH dehydrogenase (quinone) activity;6.16997564848783e-16!GO:0003954;NADH dehydrogenase activity;6.16997564848783e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.16997564848783e-16!GO:0032553;ribonucleotide binding;7.45707883523599e-16!GO:0032555;purine ribonucleotide binding;7.45707883523599e-16!GO:0044265;cellular macromolecule catabolic process;1.07285212460701e-15!GO:0017076;purine nucleotide binding;1.1694474158785e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.23339326122602e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.67862479419649e-15!GO:0044248;cellular catabolic process;1.82463112968733e-15!GO:0019941;modification-dependent protein catabolic process;2.34630443695103e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.34630443695103e-15!GO:0008135;translation factor activity, nucleic acid binding;2.92600594071679e-15!GO:0044257;cellular protein catabolic process;3.12440307716349e-15!GO:0006605;protein targeting;3.40999516455746e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.82955947509979e-15!GO:0009057;macromolecule catabolic process;7.1750172619161e-15!GO:0005635;nuclear envelope;7.55139732772162e-15!GO:0030163;protein catabolic process;7.57085635385842e-15!GO:0006512;ubiquitin cycle;8.17668174655751e-15!GO:0048193;Golgi vesicle transport;8.73829145470914e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.11447630649072e-14!GO:0005694;chromosome;3.12956339581715e-14!GO:0051082;unfolded protein binding;4.12743408836196e-14!GO:0042775;organelle ATP synthesis coupled electron transport;4.80542471370582e-14!GO:0042773;ATP synthesis coupled electron transport;4.80542471370582e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.88248706351208e-14!GO:0045271;respiratory chain complex I;5.88248706351208e-14!GO:0005747;mitochondrial respiratory chain complex I;5.88248706351208e-14!GO:0006732;coenzyme metabolic process;6.38028377815069e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.68738340395749e-14!GO:0008134;transcription factor binding;1.18389733266942e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.84620619669042e-13!GO:0022403;cell cycle phase;2.11810490349273e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.26871454223642e-13!GO:0042254;ribosome biogenesis and assembly;2.54701071156144e-13!GO:0044427;chromosomal part;3.09191530898347e-13!GO:0000087;M phase of mitotic cell cycle;4.5363111243507e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;4.75502997178599e-13!GO:0000375;RNA splicing, via transesterification reactions;4.75502997178599e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.75502997178599e-13!GO:0016192;vesicle-mediated transport;5.5103719315584e-13!GO:0005524;ATP binding;5.60029404249117e-13!GO:0051301;cell division;5.99717929695437e-13!GO:0031965;nuclear membrane;6.2280013981624e-13!GO:0007067;mitosis;6.43582952352891e-13!GO:0005789;endoplasmic reticulum membrane;6.92807053473864e-13!GO:0032559;adenyl ribonucleotide binding;7.08000934800725e-13!GO:0016070;RNA metabolic process;9.0687870780651e-13!GO:0009055;electron carrier activity;1.16871462844229e-12!GO:0030554;adenyl nucleotide binding;1.52904259519886e-12!GO:0043412;biopolymer modification;2.02563490673933e-12!GO:0006281;DNA repair;2.10943024910097e-12!GO:0005793;ER-Golgi intermediate compartment;2.2316885779061e-12!GO:0003743;translation initiation factor activity;3.82608452194644e-12!GO:0009719;response to endogenous stimulus;4.18721165403615e-12!GO:0051276;chromosome organization and biogenesis;5.3592373172517e-12!GO:0044453;nuclear membrane part;1.28188329817512e-11!GO:0006464;protein modification process;3.7602168594514e-11!GO:0009259;ribonucleotide metabolic process;4.30954412900803e-11!GO:0006260;DNA replication;5.70527153316769e-11!GO:0006413;translational initiation;5.79415286458639e-11!GO:0016604;nuclear body;6.73892291415096e-11!GO:0006163;purine nucleotide metabolic process;7.69024770774152e-11!GO:0006913;nucleocytoplasmic transport;8.19697092378312e-11!GO:0000074;regulation of progression through cell cycle;1.33483552459502e-10!GO:0012501;programmed cell death;1.49202971486739e-10!GO:0051726;regulation of cell cycle;1.5802047418605e-10!GO:0051169;nuclear transport;2.0376859358045e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.07790433554204e-10!GO:0000279;M phase;2.08654657496132e-10!GO:0006461;protein complex assembly;2.1919709272763e-10!GO:0006915;apoptosis;2.5854701436648e-10!GO:0006446;regulation of translational initiation;2.68769533052555e-10!GO:0009150;purine ribonucleotide metabolic process;2.89432954598874e-10!GO:0065004;protein-DNA complex assembly;3.88161718206484e-10!GO:0008565;protein transporter activity;3.91248214834418e-10!GO:0006164;purine nucleotide biosynthetic process;5.0326361607534e-10!GO:0006399;tRNA metabolic process;6.09173778861727e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.127018329084e-10!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.31687924769762e-10!GO:0006323;DNA packaging;7.26519987738832e-10!GO:0009260;ribonucleotide biosynthetic process;8.7008832906696e-10!GO:0043687;post-translational protein modification;9.19034212323364e-10!GO:0009056;catabolic process;9.75688566816606e-10!GO:0009060;aerobic respiration;1.18241031122416e-09!GO:0008219;cell death;1.61307913307904e-09!GO:0016265;death;1.61307913307904e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.85911051803511e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.92090235254845e-09!GO:0009141;nucleoside triphosphate metabolic process;2.29571445928464e-09!GO:0045333;cellular respiration;2.99420439322358e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.48675734195684e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.49017166935564e-09!GO:0009144;purine nucleoside triphosphate metabolic process;3.49017166935564e-09!GO:0065002;intracellular protein transport across a membrane;4.42669842860937e-09!GO:0005643;nuclear pore;4.57124830941834e-09!GO:0003712;transcription cofactor activity;4.68703184730327e-09!GO:0017038;protein import;5.24462769019732e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.42621983125475e-09!GO:0042623;ATPase activity, coupled;6.58717274101535e-09!GO:0016491;oxidoreductase activity;6.7120307540023e-09!GO:0051188;cofactor biosynthetic process;6.99271072690333e-09!GO:0006364;rRNA processing;8.49785045083805e-09!GO:0008639;small protein conjugating enzyme activity;9.77331350375782e-09!GO:0016887;ATPase activity;1.00480221001379e-08!GO:0048523;negative regulation of cellular process;1.1097071891992e-08!GO:0004386;helicase activity;1.35353922530944e-08!GO:0016607;nuclear speck;1.41139872288387e-08!GO:0006333;chromatin assembly or disassembly;1.57026624702768e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.57131422385739e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.57131422385739e-08!GO:0009117;nucleotide metabolic process;1.69416964641565e-08!GO:0000785;chromatin;1.90555604210697e-08!GO:0004842;ubiquitin-protein ligase activity;1.91461350525618e-08!GO:0015986;ATP synthesis coupled proton transport;2.19471704726127e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.19471704726127e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.32067705250898e-08!GO:0019787;small conjugating protein ligase activity;2.55967538395278e-08!GO:0016072;rRNA metabolic process;2.6239192846973e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.85286691680309e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.85286691680309e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.91306211400712e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.91306211400712e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.91306211400712e-08!GO:0051246;regulation of protein metabolic process;3.51640213421052e-08!GO:0006099;tricarboxylic acid cycle;4.40274810289584e-08!GO:0046356;acetyl-CoA catabolic process;4.40274810289584e-08!GO:0046930;pore complex;4.75899966860058e-08!GO:0046034;ATP metabolic process;4.85786652872208e-08!GO:0043038;amino acid activation;5.05264495931548e-08!GO:0006418;tRNA aminoacylation for protein translation;5.05264495931548e-08!GO:0043039;tRNA aminoacylation;5.05264495931548e-08!GO:0003924;GTPase activity;5.08692420000412e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.43951345194509e-08!GO:0019829;cation-transporting ATPase activity;5.87901486505654e-08!GO:0007005;mitochondrion organization and biogenesis;6.83555336282296e-08!GO:0030120;vesicle coat;7.21956553957984e-08!GO:0030662;coated vesicle membrane;7.21956553957984e-08!GO:0005788;endoplasmic reticulum lumen;8.31232924951959e-08!GO:0015630;microtubule cytoskeleton;8.70988555885872e-08!GO:0051187;cofactor catabolic process;9.81000248010285e-08!GO:0048475;coated membrane;1.20750071527827e-07!GO:0030117;membrane coat;1.20750071527827e-07!GO:0006334;nucleosome assembly;1.23909337941156e-07!GO:0008026;ATP-dependent helicase activity;1.2975483040032e-07!GO:0050657;nucleic acid transport;1.32805395510892e-07!GO:0051236;establishment of RNA localization;1.32805395510892e-07!GO:0050658;RNA transport;1.32805395510892e-07!GO:0006403;RNA localization;1.34426710903794e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.42858188656374e-07!GO:0009109;coenzyme catabolic process;1.52251094361648e-07!GO:0006084;acetyl-CoA metabolic process;1.55801251293815e-07!GO:0016740;transferase activity;2.11922686555358e-07!GO:0006366;transcription from RNA polymerase II promoter;2.25693794358385e-07!GO:0016853;isomerase activity;2.35314569857211e-07!GO:0005768;endosome;2.61118640976645e-07!GO:0016881;acid-amino acid ligase activity;3.2787271905829e-07!GO:0006754;ATP biosynthetic process;3.692821895322e-07!GO:0006753;nucleoside phosphate metabolic process;3.692821895322e-07!GO:0009108;coenzyme biosynthetic process;3.96051714143314e-07!GO:0003697;single-stranded DNA binding;4.21250920087443e-07!GO:0044431;Golgi apparatus part;4.24681597441088e-07!GO:0048519;negative regulation of biological process;4.68659374347013e-07!GO:0031497;chromatin assembly;5.08273424287312e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.15594780779773e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.78500159160469e-07!GO:0050794;regulation of cellular process;8.9202355668496e-07!GO:0043067;regulation of programmed cell death;9.79426735808756e-07!GO:0042981;regulation of apoptosis;1.01208522941865e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.05515215968018e-06!GO:0031988;membrane-bound vesicle;1.09455459663011e-06!GO:0045259;proton-transporting ATP synthase complex;1.28221037760904e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.32322285228834e-06!GO:0043566;structure-specific DNA binding;1.33379646184278e-06!GO:0016787;hydrolase activity;1.3856703478569e-06!GO:0043069;negative regulation of programmed cell death;1.44254073091301e-06!GO:0031252;leading edge;1.4868453355068e-06!GO:0006793;phosphorus metabolic process;1.83955402832416e-06!GO:0006796;phosphate metabolic process;1.83955402832416e-06!GO:0006752;group transfer coenzyme metabolic process;2.02712071785176e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.09441059716706e-06!GO:0005762;mitochondrial large ribosomal subunit;2.11261720468756e-06!GO:0000315;organellar large ribosomal subunit;2.11261720468756e-06!GO:0043066;negative regulation of apoptosis;2.29883370755342e-06!GO:0016859;cis-trans isomerase activity;2.33652141396593e-06!GO:0051170;nuclear import;2.35667044011283e-06!GO:0031982;vesicle;3.39664153063472e-06!GO:0032446;protein modification by small protein conjugation;3.55442677267045e-06!GO:0031410;cytoplasmic vesicle;3.69335418250607e-06!GO:0000245;spliceosome assembly;3.72199153601769e-06!GO:0043623;cellular protein complex assembly;3.75244613574944e-06!GO:0008654;phospholipid biosynthetic process;3.8021633569857e-06!GO:0051329;interphase of mitotic cell cycle;3.88679561481406e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.98220191909781e-06!GO:0006091;generation of precursor metabolites and energy;4.27344906710546e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.34225489765058e-06!GO:0005770;late endosome;4.57504087452365e-06!GO:0016310;phosphorylation;4.68058227666304e-06!GO:0051028;mRNA transport;4.86272632727584e-06!GO:0006916;anti-apoptosis;5.53324406228075e-06!GO:0015980;energy derivation by oxidation of organic compounds;5.55563690400431e-06!GO:0006606;protein import into nucleus;5.63520326869136e-06!GO:0016567;protein ubiquitination;5.67649242600068e-06!GO:0000151;ubiquitin ligase complex;6.47109039624105e-06!GO:0045454;cell redox homeostasis;6.76244413416594e-06!GO:0006613;cotranslational protein targeting to membrane;6.79255533744219e-06!GO:0004298;threonine endopeptidase activity;7.5594556780602e-06!GO:0005819;spindle;7.9338045713928e-06!GO:0005667;transcription factor complex;8.11127060981234e-06!GO:0016779;nucleotidyltransferase activity;8.26687344480556e-06!GO:0005813;centrosome;9.08505506286145e-06!GO:0005798;Golgi-associated vesicle;9.28064072890607e-06!GO:0016126;sterol biosynthetic process;1.08203717703892e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.10476301539869e-05!GO:0005791;rough endoplasmic reticulum;1.10476301539869e-05!GO:0000139;Golgi membrane;1.33781028605572e-05!GO:0051325;interphase;1.43574355075806e-05!GO:0016568;chromatin modification;1.47039771755817e-05!GO:0005773;vacuole;1.68608099815115e-05!GO:0005525;GTP binding;1.72809758655632e-05!GO:0031324;negative regulation of cellular metabolic process;1.98672316126753e-05!GO:0045786;negative regulation of progression through cell cycle;2.14930844541372e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.34855763007043e-05!GO:0044440;endosomal part;2.36603292525683e-05!GO:0010008;endosome membrane;2.36603292525683e-05!GO:0007010;cytoskeleton organization and biogenesis;2.40962277868834e-05!GO:0005815;microtubule organizing center;2.61280908854854e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.89240143648272e-05!GO:0030867;rough endoplasmic reticulum membrane;2.91441998965885e-05!GO:0003724;RNA helicase activity;3.06061263396512e-05!GO:0003714;transcription corepressor activity;3.33194991021262e-05!GO:0031968;organelle outer membrane;3.6032441421424e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.82022294549285e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.32648479905087e-05!GO:0019867;outer membrane;5.41019858236542e-05!GO:0050789;regulation of biological process;5.67264136361213e-05!GO:0000314;organellar small ribosomal subunit;5.67264136361213e-05!GO:0005763;mitochondrial small ribosomal subunit;5.67264136361213e-05!GO:0032561;guanyl ribonucleotide binding;5.99819013354056e-05!GO:0019001;guanyl nucleotide binding;5.99819013354056e-05!GO:0008610;lipid biosynthetic process;6.15139723576069e-05!GO:0009165;nucleotide biosynthetic process;6.27996792313673e-05!GO:0016564;transcription repressor activity;6.37923492588205e-05!GO:0043021;ribonucleoprotein binding;6.56693135199974e-05!GO:0008361;regulation of cell size;6.68955006765323e-05!GO:0006261;DNA-dependent DNA replication;6.80038708139097e-05!GO:0051789;response to protein stimulus;8.14263610880358e-05!GO:0006986;response to unfolded protein;8.14263610880358e-05!GO:0000775;chromosome, pericentric region;0.000107234325531902!GO:0007051;spindle organization and biogenesis;0.000113836258149669!GO:0016049;cell growth;0.000115658247987223!GO:0019899;enzyme binding;0.000121117738261104!GO:0009892;negative regulation of metabolic process;0.00012658470603155!GO:0033116;ER-Golgi intermediate compartment membrane;0.000127940096199417!GO:0051427;hormone receptor binding;0.000130476637726859!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000132310843160199!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000138015348638281!GO:0003899;DNA-directed RNA polymerase activity;0.000138280390529888!GO:0000323;lytic vacuole;0.000139997323836445!GO:0005764;lysosome;0.000139997323836445!GO:0030133;transport vesicle;0.000158034405755658!GO:0006695;cholesterol biosynthetic process;0.000158257447872339!GO:0030036;actin cytoskeleton organization and biogenesis;0.000179909850188762!GO:0005741;mitochondrial outer membrane;0.000185966080575255!GO:0006612;protein targeting to membrane;0.000190125865054402!GO:0003713;transcription coactivator activity;0.000198701915860913!GO:0005048;signal sequence binding;0.00021343428988795!GO:0043681;protein import into mitochondrion;0.00025096706043058!GO:0004576;oligosaccharyl transferase activity;0.000256637071415863!GO:0005905;coated pit;0.000261886771288374!GO:0035257;nuclear hormone receptor binding;0.000270605117170548!GO:0001558;regulation of cell growth;0.000273748474741952!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000277188629395564!GO:0016563;transcription activator activity;0.000290875440933852!GO:0005769;early endosome;0.000300935593215671!GO:0030663;COPI coated vesicle membrane;0.000304453596567577!GO:0030126;COPI vesicle coat;0.000304453596567577!GO:0008250;oligosaccharyl transferase complex;0.000307203358033571!GO:0006626;protein targeting to mitochondrion;0.000307661591585756!GO:0005885;Arp2/3 protein complex;0.000330072421409372!GO:0000075;cell cycle checkpoint;0.000348152392117169!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000408175947758552!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00041443306414038!GO:0046474;glycerophospholipid biosynthetic process;0.000443227252666505!GO:0006839;mitochondrial transport;0.000542828096525983!GO:0051168;nuclear export;0.000610434191901687!GO:0016481;negative regulation of transcription;0.000629827102670925!GO:0044262;cellular carbohydrate metabolic process;0.000636887055260077!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000654322429967138!GO:0018196;peptidyl-asparagine modification;0.00071773759861729!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00071773759861729!GO:0051920;peroxiredoxin activity;0.000756991035311879!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000779857690353089!GO:0008094;DNA-dependent ATPase activity;0.000779857690353089!GO:0000786;nucleosome;0.000834785967376517!GO:0030027;lamellipodium;0.000842780449254044!GO:0007243;protein kinase cascade;0.000860409894006453!GO:0005657;replication fork;0.000861742126082119!GO:0016363;nuclear matrix;0.000909931249009704!GO:0006414;translational elongation;0.000933462841435116!GO:0007006;mitochondrial membrane organization and biogenesis;0.000970367622445612!GO:0030137;COPI-coated vesicle;0.000970367622445612!GO:0000059;protein import into nucleus, docking;0.000979896340127455!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000983686334311159!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000990444015794277!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000990444015794277!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000990444015794277!GO:0008186;RNA-dependent ATPase activity;0.000998825420768046!GO:0006891;intra-Golgi vesicle-mediated transport;0.00108403410877969!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00108682728582849!GO:0042802;identical protein binding;0.00109973584995634!GO:0006950;response to stress;0.00115723416135018!GO:0030029;actin filament-based process;0.00116683427459888!GO:0019752;carboxylic acid metabolic process;0.00119009829068306!GO:0046467;membrane lipid biosynthetic process;0.00120237377106784!GO:0006082;organic acid metabolic process;0.00121189287457626!GO:0031072;heat shock protein binding;0.00125018146734636!GO:0003684;damaged DNA binding;0.00126535249081827!GO:0043284;biopolymer biosynthetic process;0.00129012175172232!GO:0030176;integral to endoplasmic reticulum membrane;0.00129164056991777!GO:0019843;rRNA binding;0.00136962990410001!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00140221254354156!GO:0046483;heterocycle metabolic process;0.00144492880860383!GO:0051252;regulation of RNA metabolic process;0.0014630444554957!GO:0043488;regulation of mRNA stability;0.00149562279695113!GO:0043487;regulation of RNA stability;0.00149562279695113!GO:0003729;mRNA binding;0.00157996944247226!GO:0003690;double-stranded DNA binding;0.00157996944247226!GO:0051052;regulation of DNA metabolic process;0.00165206424804897!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00171340630003121!GO:0048500;signal recognition particle;0.00173778597054219!GO:0048471;perinuclear region of cytoplasm;0.00173838865698657!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00181688000433134!GO:0001726;ruffle;0.00184355422125798!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00186453980151897!GO:0008033;tRNA processing;0.00190424842181527!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00192358702779659!GO:0006979;response to oxidative stress;0.0019742827330587!GO:0009112;nucleobase metabolic process;0.00198231145736731!GO:0008180;signalosome;0.00212022828695438!GO:0000082;G1/S transition of mitotic cell cycle;0.00214922748521849!GO:0030880;RNA polymerase complex;0.00231764485114422!GO:0006383;transcription from RNA polymerase III promoter;0.00250105759789265!GO:0015631;tubulin binding;0.00257362795193195!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00260632535113222!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00260632535113222!GO:0005684;U2-dependent spliceosome;0.00260632535113222!GO:0004004;ATP-dependent RNA helicase activity;0.00261917106669072!GO:0006302;double-strand break repair;0.00287557535267665!GO:0065009;regulation of a molecular function;0.00294384829477683!GO:0051087;chaperone binding;0.00301554055306035!GO:0000776;kinetochore;0.00303412216369978!GO:0044452;nucleolar part;0.00318482406736998!GO:0048522;positive regulation of cellular process;0.00325945130479703!GO:0035258;steroid hormone receptor binding;0.00338321255130241!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00339048944010478!GO:0015002;heme-copper terminal oxidase activity;0.00339048944010478!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00339048944010478!GO:0004129;cytochrome-c oxidase activity;0.00339048944010478!GO:0006352;transcription initiation;0.00346114612649165!GO:0006520;amino acid metabolic process;0.00346114612649165!GO:0004177;aminopeptidase activity;0.00347012504652194!GO:0030658;transport vesicle membrane;0.00347109680131525!GO:0051287;NAD binding;0.00347599314357924!GO:0048487;beta-tubulin binding;0.00356650988007905!GO:0030134;ER to Golgi transport vesicle;0.00364800959738185!GO:0016044;membrane organization and biogenesis;0.00365126054532249!GO:0046489;phosphoinositide biosynthetic process;0.00388367527404415!GO:0005874;microtubule;0.00388367527404415!GO:0030659;cytoplasmic vesicle membrane;0.00395727327031186!GO:0008312;7S RNA binding;0.00399076889982466!GO:0015992;proton transport;0.00408179906765063!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00413993511023312!GO:0045047;protein targeting to ER;0.00413993511023312!GO:0016741;transferase activity, transferring one-carbon groups;0.0042094774269394!GO:0003678;DNA helicase activity;0.00426015701933637!GO:0008168;methyltransferase activity;0.00429610562310074!GO:0006402;mRNA catabolic process;0.00451101031977359!GO:0030132;clathrin coat of coated pit;0.00456539580818116!GO:0006818;hydrogen transport;0.00459108458206279!GO:0051540;metal cluster binding;0.0046205802017136!GO:0051536;iron-sulfur cluster binding;0.0046205802017136!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00495769040064166!GO:0030118;clathrin coat;0.00498000757349518!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00498000757349518!GO:0000428;DNA-directed RNA polymerase complex;0.00498000757349518!GO:0008139;nuclear localization sequence binding;0.00506753316135884!GO:0006310;DNA recombination;0.00514116881563701!GO:0045045;secretory pathway;0.005195814688467!GO:0030127;COPII vesicle coat;0.00519675806702129!GO:0012507;ER to Golgi transport vesicle membrane;0.00519675806702129!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00535299746470208!GO:0050662;coenzyme binding;0.00552815816774914!GO:0006595;polyamine metabolic process;0.00561030119202647!GO:0016251;general RNA polymerase II transcription factor activity;0.00587407801811297!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00596593738173665!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00620971754113831!GO:0009116;nucleoside metabolic process;0.0062429382971534!GO:0051128;regulation of cellular component organization and biogenesis;0.0062429382971534!GO:0007088;regulation of mitosis;0.00626106520785876!GO:0007050;cell cycle arrest;0.0062912008524862!GO:0005637;nuclear inner membrane;0.00637129672342059!GO:0031902;late endosome membrane;0.00637129672342059!GO:0008047;enzyme activator activity;0.00654718593052701!GO:0016125;sterol metabolic process;0.00662970053796103!GO:0007052;mitotic spindle organization and biogenesis;0.00681456937363172!GO:0017166;vinculin binding;0.00692607714292411!GO:0004674;protein serine/threonine kinase activity;0.00702141117165497!GO:0044433;cytoplasmic vesicle part;0.00711484960199123!GO:0030521;androgen receptor signaling pathway;0.00721769521365647!GO:0008092;cytoskeletal protein binding;0.00733544035750049!GO:0022890;inorganic cation transmembrane transporter activity;0.00733810887274831!GO:0006650;glycerophospholipid metabolic process;0.00733810887274831!GO:0030660;Golgi-associated vesicle membrane;0.007718139257289!GO:0016408;C-acyltransferase activity;0.00787326408121969!GO:0005869;dynactin complex;0.00794113870617048!GO:0008632;apoptotic program;0.00809860428781818!GO:0051539;4 iron, 4 sulfur cluster binding;0.00815236847455557!GO:0003682;chromatin binding;0.00828961668749145!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00859153766412282!GO:0031124;mRNA 3'-end processing;0.00875346191239194!GO:0016860;intramolecular oxidoreductase activity;0.00901852062163767!GO:0007093;mitotic cell cycle checkpoint;0.00926426896178941!GO:0019222;regulation of metabolic process;0.00945631227814669!GO:0030145;manganese ion binding;0.00959803430469617!GO:0006401;RNA catabolic process;0.00974962149210299!GO:0065007;biological regulation;0.0100074153402506!GO:0007264;small GTPase mediated signal transduction;0.0100348079187172!GO:0007040;lysosome organization and biogenesis;0.0101879677321119!GO:0043022;ribosome binding;0.0103143239149724!GO:0008243;plasminogen activator activity;0.0107409179839471!GO:0006220;pyrimidine nucleotide metabolic process;0.0107873662455096!GO:0000049;tRNA binding;0.0107873662455096!GO:0006611;protein export from nucleus;0.0111075465609518!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0111965435111918!GO:0006740;NADPH regeneration;0.0112366701505914!GO:0006098;pentose-phosphate shunt;0.0112366701505914!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0112396230144681!GO:0005862;muscle thin filament tropomyosin;0.0118503503804744!GO:0016197;endosome transport;0.0119025061288197!GO:0005832;chaperonin-containing T-complex;0.011909772656582!GO:0005586;collagen type III;0.0120352567269124!GO:0031625;ubiquitin protein ligase binding;0.0122085346637074!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0123434179798819!GO:0006509;membrane protein ectodomain proteolysis;0.0123626347593172!GO:0033619;membrane protein proteolysis;0.0123626347593172!GO:0016584;nucleosome positioning;0.0123909945035182!GO:0003746;translation elongation factor activity;0.0124163553319075!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.012519397709832!GO:0015399;primary active transmembrane transporter activity;0.012519397709832!GO:0016272;prefoldin complex;0.012519397709832!GO:0032508;DNA duplex unwinding;0.012576367311595!GO:0032392;DNA geometric change;0.012576367311595!GO:0005581;collagen;0.012581469002045!GO:0006275;regulation of DNA replication;0.0128250857676882!GO:0003711;transcription elongation regulator activity;0.0128378128021206!GO:0012506;vesicle membrane;0.0132089231857334!GO:0000339;RNA cap binding;0.0132823192067203!GO:0006778;porphyrin metabolic process;0.0139812594914158!GO:0033013;tetrapyrrole metabolic process;0.0139812594914158!GO:0050750;low-density lipoprotein receptor binding;0.0140053946123578!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0140053946123578!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0141351375802848!GO:0040008;regulation of growth;0.014389713098598!GO:0004527;exonuclease activity;0.0151794169666348!GO:0006643;membrane lipid metabolic process;0.0155447845542265!GO:0006144;purine base metabolic process;0.0156457236945693!GO:0045892;negative regulation of transcription, DNA-dependent;0.0159993428209351!GO:0051101;regulation of DNA binding;0.0160509391862435!GO:0006733;oxidoreduction coenzyme metabolic process;0.0164712826993216!GO:0030032;lamellipodium biogenesis;0.0164813364123742!GO:0005774;vacuolar membrane;0.0173066636581521!GO:0007017;microtubule-based process;0.0173996278922812!GO:0050811;GABA receptor binding;0.0174930252593862!GO:0031529;ruffle organization and biogenesis;0.0178359644483033!GO:0000209;protein polyubiquitination;0.0182004252711517!GO:0032984;macromolecular complex disassembly;0.0183700052864547!GO:0006289;nucleotide-excision repair;0.0185320666870347!GO:0006268;DNA unwinding during replication;0.018972000128611!GO:0008629;induction of apoptosis by intracellular signals;0.019019932443312!GO:0005669;transcription factor TFIID complex;0.0194517633243569!GO:0050681;androgen receptor binding;0.0198088831239884!GO:0005876;spindle microtubule;0.0202113652542339!GO:0007033;vacuole organization and biogenesis;0.02035120921674!GO:0006118;electron transport;0.0211087769159133!GO:0006892;post-Golgi vesicle-mediated transport;0.0211387233468659!GO:0000096;sulfur amino acid metabolic process;0.02116883080741!GO:0003756;protein disulfide isomerase activity;0.0213973903004288!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0213973903004288!GO:0031418;L-ascorbic acid binding;0.0219617029149792!GO:0006790;sulfur metabolic process;0.0220161058337595!GO:0030119;AP-type membrane coat adaptor complex;0.022088257494288!GO:0031970;organelle envelope lumen;0.0222250138020703!GO:0019798;procollagen-proline dioxygenase activity;0.022306047993964!GO:0005096;GTPase activator activity;0.0224760191123245!GO:0006405;RNA export from nucleus;0.0225432129834528!GO:0009967;positive regulation of signal transduction;0.0231860664885759!GO:0005758;mitochondrial intermembrane space;0.0238386075717312!GO:0042770;DNA damage response, signal transduction;0.0239678010333473!GO:0033559;unsaturated fatty acid metabolic process;0.0242293155921817!GO:0006636;unsaturated fatty acid biosynthetic process;0.0242293155921817!GO:0004003;ATP-dependent DNA helicase activity;0.0247165836608858!GO:0006720;isoprenoid metabolic process;0.0247190031650803!GO:0000910;cytokinesis;0.0247190031650803!GO:0031543;peptidyl-proline dioxygenase activity;0.0252102677542677!GO:0030384;phosphoinositide metabolic process;0.0253086971299251!GO:0006497;protein amino acid lipidation;0.0254230485289895!GO:0006417;regulation of translation;0.0255910206183715!GO:0048468;cell development;0.0259897301165677!GO:0030518;steroid hormone receptor signaling pathway;0.0260255892538852!GO:0007059;chromosome segregation;0.0260255892538852!GO:0051098;regulation of binding;0.0261842242696205!GO:0000287;magnesium ion binding;0.0262300815429932!GO:0015036;disulfide oxidoreductase activity;0.0262701254370937!GO:0030508;thiol-disulfide exchange intermediate activity;0.0263721642910471!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0267008413560899!GO:0043624;cellular protein complex disassembly;0.0267222674394714!GO:0000792;heterochromatin;0.0269590354621004!GO:0006769;nicotinamide metabolic process;0.0272504826208014!GO:0046519;sphingoid metabolic process;0.0272504826208014!GO:0008299;isoprenoid biosynthetic process;0.0275597907699025!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0275782427745857!GO:0031901;early endosome membrane;0.0275910720704334!GO:0048037;cofactor binding;0.0281169182938378!GO:0007034;vacuolar transport;0.0284038956319557!GO:0006672;ceramide metabolic process;0.0285322957908169!GO:0042158;lipoprotein biosynthetic process;0.0286538552615717!GO:0043241;protein complex disassembly;0.0292194799046157!GO:0019206;nucleoside kinase activity;0.029520911492334!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.029520911492334!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.029520911492334!GO:0008637;apoptotic mitochondrial changes;0.0298550782680792!GO:0009119;ribonucleoside metabolic process;0.0304637399876758!GO:0006984;ER-nuclear signaling pathway;0.0307690254455066!GO:0004448;isocitrate dehydrogenase activity;0.0308913941141019!GO:0009303;rRNA transcription;0.0308913941141019!GO:0035035;histone acetyltransferase binding;0.0309008889289248!GO:0008286;insulin receptor signaling pathway;0.0309008889289248!GO:0022406;membrane docking;0.0309008889289248!GO:0048278;vesicle docking;0.0309008889289248!GO:0030496;midbody;0.0311567385307839!GO:0006807;nitrogen compound metabolic process;0.0312141679001071!GO:0006779;porphyrin biosynthetic process;0.0313557168879015!GO:0033014;tetrapyrrole biosynthetic process;0.0313557168879015!GO:0006739;NADP metabolic process;0.0315903360858975!GO:0006338;chromatin remodeling;0.0315903360858975!GO:0030125;clathrin vesicle coat;0.0315903360858975!GO:0030665;clathrin coated vesicle membrane;0.0315903360858975!GO:0006519;amino acid and derivative metabolic process;0.032312554304871!GO:0006607;NLS-bearing substrate import into nucleus;0.0323767418408244!GO:0008154;actin polymerization and/or depolymerization;0.0324128576818488!GO:0031371;ubiquitin conjugating enzyme complex;0.0331597955919438!GO:0006066;alcohol metabolic process;0.0335988890928643!GO:0006007;glucose catabolic process;0.0336429758076508!GO:0007021;tubulin folding;0.0337560983029547!GO:0006644;phospholipid metabolic process;0.0337824286655623!GO:0008538;proteasome activator activity;0.0339144103516169!GO:0016407;acetyltransferase activity;0.0340374293705208!GO:0030041;actin filament polymerization;0.0341323158705553!GO:0045792;negative regulation of cell size;0.0342376204516726!GO:0050790;regulation of catalytic activity;0.0345392821312452!GO:0042168;heme metabolic process;0.0345392821312452!GO:0031123;RNA 3'-end processing;0.0345912771939531!GO:0000178;exosome (RNase complex);0.0346643829203965!GO:0044255;cellular lipid metabolic process;0.0346712839754778!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0348437487154767!GO:0030131;clathrin adaptor complex;0.035480687966735!GO:0006506;GPI anchor biosynthetic process;0.0358364728608503!GO:0030833;regulation of actin filament polymerization;0.0366401340779431!GO:0046426;negative regulation of JAK-STAT cascade;0.0367051758348324!GO:0008022;protein C-terminus binding;0.0375823693182623!GO:0047485;protein N-terminus binding;0.0379148653780937!GO:0007030;Golgi organization and biogenesis;0.0379695630538583!GO:0030433;ER-associated protein catabolic process;0.0383133198053863!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0383133198053863!GO:0005784;translocon complex;0.03834540394276!GO:0009308;amine metabolic process;0.0385600772521696!GO:0030911;TPR domain binding;0.0395376029669113!GO:0042393;histone binding;0.0396518306513673!GO:0044437;vacuolar part;0.0396518306513673!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0396518306513673!GO:0010257;NADH dehydrogenase complex assembly;0.0396518306513673!GO:0033108;mitochondrial respiratory chain complex assembly;0.0396518306513673!GO:0006376;mRNA splice site selection;0.0399948954394836!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0399948954394836!GO:0030308;negative regulation of cell growth;0.040516713474411!GO:0005801;cis-Golgi network;0.0408870567633224!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0411088202943903!GO:0033043;regulation of organelle organization and biogenesis;0.0411088202943903!GO:0005938;cell cortex;0.0423168803838394!GO:0008097;5S rRNA binding;0.0423812565997113!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0425900350055999!GO:0033673;negative regulation of kinase activity;0.0428655487265811!GO:0006469;negative regulation of protein kinase activity;0.0428655487265811!GO:0005765;lysosomal membrane;0.0428655487265811!GO:0006904;vesicle docking during exocytosis;0.043019129650791!GO:0001872;zymosan binding;0.0430876974500067!GO:0001878;response to yeast;0.0430876974500067!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0438283200129732!GO:0016301;kinase activity;0.0439491128962524!GO:0048518;positive regulation of biological process;0.0443419839324344!GO:0040029;regulation of gene expression, epigenetic;0.0446714832530457!GO:0048144;fibroblast proliferation;0.0446770794244399!GO:0048145;regulation of fibroblast proliferation;0.0446770794244399!GO:0050178;phenylpyruvate tautomerase activity;0.0446770794244399!GO:0006505;GPI anchor metabolic process;0.0450600109102957!GO:0006378;mRNA polyadenylation;0.0453001726936843!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.04590509201866!GO:0045039;protein import into mitochondrial inner membrane;0.04590509201866!GO:0016453;C-acetyltransferase activity;0.0466475478943598!GO:0051348;negative regulation of transferase activity;0.0466475478943598!GO:0007346;regulation of progression through mitotic cell cycle;0.0467345896131493!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0470827163681615!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0477682404488359!GO:0000922;spindle pole;0.0477985337327496!GO:0006284;base-excision repair;0.0479861850181469!GO:0043065;positive regulation of apoptosis;0.048658083668789!GO:0006596;polyamine biosynthetic process;0.0489712479483395!GO:0030149;sphingolipid catabolic process;0.0489712479483395!GO:0031570;DNA integrity checkpoint;0.0494117816843908!GO:0051716;cellular response to stimulus;0.0499784210368745!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0499910147682757
|sample_id=11396
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=colon
|top_motifs=TAL1_TCF{3,4,12}:1.88389853078;NKX3-1:1.51976971087;PAX1,9:1.24794116654;GZF1:1.20530976155;ALX4:1.18765030027;CDC5L:1.13130546675;TFAP4:1.1012171132;HOXA9_MEIS1:0.959090940642;HSF1,2:0.951589105439;ESR1:0.915741453776;GFI1B:0.874923132772;HOX{A5,B5}:0.864391483614;UFEwm:0.862365922466;GFI1:0.847827815801;NR3C1:0.832386247492;TEAD1:0.825739729018;ZNF238:0.789926050486;TOPORS:0.789681818339;YY1:0.772919588957;ATF6:0.766684249734;EN1,2:0.742765120986;EBF1:0.738126227757;TEF:0.735677472178;GLI1..3:0.720296192623;SOX17:0.717289985118;TP53:0.668995411781;NKX2-2,8:0.667428784027;TLX1..3_NFIC{dimer}:0.640684882504;NANOG{mouse}:0.636258985891;RXRA_VDR{dimer}:0.614499431305;DBP:0.589367486273;PBX1:0.581639386582;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.572591403187;SRF:0.566342253869;POU3F1..4:0.566209175561;RXR{A,B,G}:0.557444366374;KLF4:0.521718727338;GTF2A1,2:0.520599133391;E2F1..5:0.511878880046;TBX4,5:0.507058986731;TFDP1:0.504711694776;MZF1:0.499601975851;PAX5:0.483607058359;AIRE:0.475028495141;NFY{A,B,C}:0.474623421077;IKZF1:0.468477931763;SPZ1:0.43297282439;NFIX:0.429707593899;LHX3,4:0.420957903413;MYBL2:0.416297062781;NKX2-1,4:0.402907088435;POU6F1:0.364279146164;TBP:0.354137525225;GTF2I:0.353418528254;NR6A1:0.345970558812;HES1:0.34198428137;ELK1,4_GABP{A,B1}:0.326738728085;CRX:0.322217860238;PATZ1:0.319297218172;POU1F1:0.284427509197;ESRRA:0.284094969;EVI1:0.279783466315;ONECUT1,2:0.274411178934;ZNF423:0.273414372865;HOX{A4,D4}:0.27048585281;PPARG:0.265961449986;ZIC1..3:0.263675963113;STAT5{A,B}:0.242467044382;ZNF143:0.241005252966;bHLH_family:0.234287887362;TFCP2:0.227807508889;XCPE1{core}:0.208466731712;HIC1:0.202257914657;SP1:0.193342709708;NFE2L2:0.188693500867;TFAP2{A,C}:0.185519650511;MAZ:0.173096817629;MYB:0.151972634524;ZNF384:0.150237627466;GCM1,2:0.144059723202;HNF4A_NR2F1,2:0.13975725132;HAND1,2:0.139471417749;NFATC1..3:0.139402310031;HMGA1,2:0.122727002915;PAX4:0.12077061781;SREBF1,2:0.10750351697;NFE2L1:0.106324121425;FOXQ1:0.0943567440045;NRF1:0.0887618413832;AHR_ARNT_ARNT2:0.0813487792787;HLF:0.0762055701651;FOXM1:0.0747935009201;MYFfamily:0.0701811642261;ZBTB16:0.0692091804028;ARID5B:0.0587077583746;TLX2:0.0578919464188;XBP1:0.0574465928266;NR1H4:0.0507033437286;HNF1A:0.0482679370422;CDX1,2,4:0.0415204698491;ADNP_IRX_SIX_ZHX:0.0334923117187;LEF1_TCF7_TCF7L1,2:0.0327818072718;PAX3,7:0.0286261890362;NKX6-1,2:0.0116707973726;GATA4:-0.00565777464427;MAFB:-0.00607396043896;PAX8:-0.0122751268336;NHLH1,2:-0.0155692453708;EGR1..3:-0.0218057390699;MTE{core}:-0.028544436836;ZNF148:-0.0354616814927;NR5A1,2:-0.0470071794235;PRRX1,2:-0.0678566660153;FOXD3:-0.0711728485276;ZFP161:-0.0745903801718;STAT1,3:-0.0826220282908;CEBPA,B_DDIT3:-0.105065099125;AR:-0.107634500886;NKX2-3_NKX2-5:-0.108916724859;ZBTB6:-0.131956426806;FOS_FOS{B,L1}_JUN{B,D}:-0.13538573178;BACH2:-0.137101877299;PRDM1:-0.156460473006;POU5F1:-0.17036390603;TFAP2B:-0.180834314142;HMX1:-0.180911443831;REST:-0.208587047418;RFX1:-0.219275367006;FOXP1:-0.223300171491;MTF1:-0.232174351857;FOX{I1,J2}:-0.241488733848;FOX{F1,F2,J1}:-0.245369749148;PAX2:-0.249200295769;JUN:-0.263820806902;FOSL2:-0.265608473867;NFE2:-0.277378325933;ATF2:-0.27843566048;STAT2,4,6:-0.280639736139;CREB1:-0.28354326448;HIF1A:-0.294315828305;FOXP3:-0.30720848095;OCT4_SOX2{dimer}:-0.32631950142;SMAD1..7,9:-0.326618721332;RUNX1..3:-0.327601146787;SOX5:-0.328487952426;MED-1{core}:-0.336069321238;IRF7:-0.341496878909;ELF1,2,4:-0.360684855913;TGIF1:-0.361828437133;HBP1_HMGB_SSRP1_UBTF:-0.387771566577;NFKB1_REL_RELA:-0.393387832098;HOX{A6,A7,B6,B7}:-0.405387981873;SOX{8,9,10}:-0.416655883401;RREB1:-0.426808807485;RFX2..5_RFXANK_RFXAP:-0.428034314751;NANOG:-0.437423818738;NKX3-2:-0.446497042735;PAX6:-0.450595219997;MEF2{A,B,C,D}:-0.460064929508;PITX1..3:-0.468451754378;IRF1,2:-0.475819093313;FOXA2:-0.49174152985;PDX1:-0.497460395584;FOXL1:-0.518640089423;ALX1:-0.520550154686;ETS1,2:-0.523747372916;POU2F1..3:-0.530432364014;DMAP1_NCOR{1,2}_SMARC:-0.536798871635;GATA6:-0.537214837739;SOX2:-0.540603592024;SPIB:-0.543144968305;ATF5_CREB3:-0.564002781686;BREu{core}:-0.564761747998;SPI1:-0.588669691544;BPTF:-0.597006545575;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.601661583451;ATF4:-0.623633829933;FOXN1:-0.630722571782;FOXO1,3,4:-0.631199393585;T:-0.633521907408;NFIL3:-0.636497435949;RBPJ:-0.709415184896;CUX2:-0.714547617247;LMO2:-0.732497245607;RORA:-0.737425359731;FOX{D1,D2}:-0.763989542139;IKZF2:-0.76909444377;SNAI1..3:-0.825253459119;EP300:-0.907757050579;ZEB1:-0.925616237798;VSX1,2:-0.998863784944;MYOD1:-1.07903687138
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11396-118D1;search_select_hide=table117:FF:11396-118D1
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Smooth Muscle Cells - Colonic, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12007
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecolon
dev stagefetus
sexunknown
agefetal
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1147
catalog numberSC2945
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004795
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12007 CAGE DRX008485 DRR009357
Accession ID Hg19

Library idBAMCTSS
CNhs12007 DRZ000782 DRZ002167
Accession ID Hg38

Library idBAMCTSS
CNhs12007 DRZ012132 DRZ013517
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004795
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.TAGCTT sRNA-Seq DRX037076 DRR041442
Accession ID Hg19

Library idBAMCTSS
SRhi10006.TAGCTT DRZ007084


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0199
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.279
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.131
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0919
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0175
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.127
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0484
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.393
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0478
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.19
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.228
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0919
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.131
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00733
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.274
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0919
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0919
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0484
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.621
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.536
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.354
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.494
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.337
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12007

Jaspar motifP-value
MA0002.20.012
MA0003.10.657
MA0004.10.963
MA0006.10.399
MA0007.10.421
MA0009.10.12
MA0014.10.722
MA0017.10.269
MA0018.20.015
MA0019.10.136
MA0024.10.0582
MA0025.10.0141
MA0027.10.947
MA0028.10.234
MA0029.10.931
MA0030.10.088
MA0031.10.0189
MA0035.20.0736
MA0038.10.104
MA0039.20.2
MA0040.10.729
MA0041.10.626
MA0042.10.491
MA0043.10.054
MA0046.10.443
MA0047.20.0358
MA0048.10.0171
MA0050.11.01529e-4
MA0051.13.48145e-4
MA0052.10.00881
MA0055.10.0295
MA0057.10.822
MA0058.10.998
MA0059.10.775
MA0060.10.00165
MA0061.11.45858e-5
MA0062.20.0648
MA0065.20.18
MA0066.10.612
MA0067.10.0168
MA0068.10.121
MA0069.10.169
MA0070.10.388
MA0071.10.586
MA0072.10.213
MA0073.10.528
MA0074.10.456
MA0076.10.706
MA0077.10.472
MA0078.10.832
MA0079.20.606
MA0080.26.50224e-13
MA0081.10.0319
MA0083.10.0383
MA0084.10.332
MA0087.10.726
MA0088.10.0651
MA0090.10.00378
MA0091.10.0447
MA0092.10.936
MA0093.10.845
MA0099.26.64118e-6
MA0100.10.75
MA0101.10.00318
MA0102.20.224
MA0103.11.81982e-4
MA0104.20.175
MA0105.17.24419e-4
MA0106.10.0144
MA0107.11.47627e-4
MA0108.20.0928
MA0111.10.869
MA0112.20.644
MA0113.10.924
MA0114.10.444
MA0115.10.296
MA0116.10.126
MA0117.10.487
MA0119.10.718
MA0122.10.0942
MA0124.10.345
MA0125.10.314
MA0131.10.988
MA0135.10.24
MA0136.15.34058e-12
MA0137.20.395
MA0138.20.434
MA0139.10.277
MA0140.10.534
MA0141.10.7
MA0142.10.164
MA0143.10.639
MA0144.10.295
MA0145.10.958
MA0146.10.487
MA0147.10.145
MA0148.10.0844
MA0149.10.352
MA0150.10.00226
MA0152.10.0912
MA0153.10.313
MA0154.10.0461
MA0155.10.817
MA0156.14.00235e-7
MA0157.10.0452
MA0159.10.0225
MA0160.10.186
MA0162.10.0401
MA0163.10.32
MA0164.10.76
MA0258.10.196
MA0259.10.596



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12007

Novel motifP-value
10.338
100.977
1000.156
1010.43
1020.156
1030.745
1040.863
1050.169
1060.134
1070.911
1080.614
1090.418
110.742
1100.476
1110.38
1120.218
1130.13
1140.217
1150.125
1160.16
1170.612
1180.995
1190.117
120.266
1200.204
1210.345
1220.019
1230.0476
1240.0641
1250.265
1260.753
1270.233
1280.706
1290.0455
130.861
1300.0137
1310.577
1320.948
1330.913
1340.446
1350.386
1360.0863
1370.0226
1380.121
1390.113
140.126
1400.227
1410.318
1420.899
1430.343
1440.827
1450.544
1460.802
1470.438
1480.279
1490.803
150.0703
1500.768
1510.919
1520.138
1530.389
1540.819
1555.98858e-4
1560.517
1570.409
1580.00944
1590.177
160.634
1600.911
1610.731
1620.238
1630.947
1640.285
1650.42
1660.0385
1670.321
1680.0929
1690.616
170.605
180.644
190.436
20.905
200.74
210.586
220.83
230.203
240.584
250.14
260.418
270.703
280.166
290.743
30.656
300.617
310.92
325.89085e-11
330.971
340.989
350.418
360.0543
370.893
380.385
390.658
40.145
400.685
410.0073
420.329
430.274
440.659
450.185
460.323
470.607
480.66
490.107
50.181
500.672
510.83
520.604
530.125
540.688
550.58
560.761
570.484
580.0859
590.537
60.632
600.15
610.906
620.055
630.625
640.572
650.525
660.611
670.86
680.83
690.709
70.216
700.00106
710.908
720.457
730.123
740.0717
750.42
760.55
770.777
780.271
790.0504
80.809
800.0528
810.486
820.121
830.987
840.622
850.285
860.578
870.0809
880.532
890.646
90.91
900.576
910.513
920.288
930.0751
940.51
950.257
960.061
970.905
980.174
996.63608e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12007


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002504 (enteric smooth muscle cell)
1000279 (smooth muscle cell of large intestine)
1000280 (smooth muscle cell of colon)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0000059 (large intestine)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000180 (human smooth muscle cell of intestine sample)
0000181 (human smooth muscle of colon sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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