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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008380
|DRA_sample_Accession=CAGE@DRS008380
|accession_numbers=CAGE;DRX008488;DRR009360;DRZ000785;DRZ002170
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0010314,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0004573,UBERON:0003498,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0005985,UBERON:0010317,UBERON:0007798,UBERON:0001621,UBERON:0004535,UBERON:0004571,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002494,CL:0000359,CL:0002592
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000172
|is_a=EFO:0002091;;FF:0000172
|is_obsolete=
|is_obsolete=
|library_id=CNhs12045
|library_ids=CNhs12045
|library_ids=CNhs12045
|name=Smooth Muscle Cells - Coronary Artery, donor3
|name=Smooth Muscle Cells - Coronary Artery, donor3
Line 87: Line 89:
|top_motifs=PPARG:1.78263440194;POU3F1..4:1.35826609183;ALX1:1.35781160448;ALX4:1.2056109421;HES1:1.15109548058;PAX1,9:1.05095077035;GTF2A1,2:1.00771868745;ONECUT1,2:0.989181715063;ZBTB6:0.988676026524;ZNF238:0.917293307186;SPZ1:0.849670507755;PBX1:0.831078083612;GCM1,2:0.821313594417;HOX{A5,B5}:0.817353158377;EBF1:0.799104740772;HSF1,2:0.778632792171;FOX{I1,J2}:0.755270379458;TLX1..3_NFIC{dimer}:0.740734336396;TFCP2:0.737208276042;NR5A1,2:0.70792911965;ATF6:0.683058237912;IKZF1:0.67684230879;GLI1..3:0.676675118558;SMAD1..7,9:0.67532774307;HOXA9_MEIS1:0.660083220297;EN1,2:0.654695301285;XCPE1{core}:0.64661578325;TFAP4:0.642081395731;PAX8:0.635966156414;RXRA_VDR{dimer}:0.608859899946;TP53:0.606799282623;NR3C1:0.581731187306;CRX:0.580746424065;FOXL1:0.580444824772;NFE2L2:0.531196133797;GFI1B:0.523623802179;FOXQ1:0.514876122334;NFATC1..3:0.512292816339;UFEwm:0.500468769845;AR:0.500173650134;TBP:0.492698249185;TBX4,5:0.488149436263;ELK1,4_GABP{A,B1}:0.486559401794;TEAD1:0.48243401719;NFE2L1:0.473508136435;TFAP2B:0.448461067583;ZIC1..3:0.436791563135;TFAP2{A,C}:0.425660950837;ZNF148:0.425625878757;CDC5L:0.405420985724;MYBL2:0.360837168543;NKX2-2,8:0.350221612743;TAL1_TCF{3,4,12}:0.347736021835;NANOG{mouse}:0.34007259383;SRF:0.331996111075;PAX5:0.323321907203;RXR{A,B,G}:0.318329591492;GZF1:0.312844986367;BACH2:0.305460734909;KLF4:0.283567170275;JUN:0.275618169423;XBP1:0.271465617341;ZNF423:0.263881146141;FOS_FOS{B,L1}_JUN{B,D}:0.261695719557;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.258813166879;HIF1A:0.250097428826;ESR1:0.228114179639;FOXM1:0.205244537138;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203478379147;STAT5{A,B}:0.201777746172;LHX3,4:0.195966555248;HMX1:0.193145431375;SOX17:0.17887091425;MAFB:0.142893788068;bHLH_family:0.136895669904;FOSL2:0.133524499331;ESRRA:0.133521549422;NFIX:0.125859822622;ARID5B:0.125327174009;HIC1:0.124486909675;REST:0.122159249162;HLF:0.11304605508;NKX3-2:0.10600615812;HNF1A:0.105377504461;TFDP1:0.105018743211;VSX1,2:0.101515997323;LEF1_TCF7_TCF7L1,2:0.100473047893;DBP:0.074849887157;POU1F1:0.0686345018533;POU6F1:0.0538362305971;AIRE:0.0371156913683;NHLH1,2:0.0356848794365;SP1:0.0114364519047;PAX2:-3.44259787082e-05;MZF1:-0.0109287846138;SOX{8,9,10}:-0.0164672862166;POU2F1..3:-0.0178200493699;ADNP_IRX_SIX_ZHX:-0.0246526278094;MTE{core}:-0.0270528502879;MYB:-0.028997171021;TLX2:-0.0412492581518;NFKB1_REL_RELA:-0.0432549963567;GTF2I:-0.0574438157566;POU5F1:-0.076464250036;NRF1:-0.0997494496421;PRRX1,2:-0.100094158547;PAX3,7:-0.130191137287;STAT2,4,6:-0.147388969803;PAX6:-0.148911137034;YY1:-0.152081070452;NFE2:-0.152382886715;PATZ1:-0.159096313649;PRDM1:-0.168409767601;HOX{A4,D4}:-0.177380194212;MAZ:-0.182976037318;ZNF143:-0.184726174321;NKX3-1:-0.190828796201;ZFP161:-0.196206889963;NANOG:-0.202812716077;ELF1,2,4:-0.209551989285;CEBPA,B_DDIT3:-0.216761239631;ETS1,2:-0.218113525111;MTF1:-0.223641872577;RFX1:-0.22728874544;RUNX1..3:-0.24468645328;GATA6:-0.245887342432;RORA:-0.257962689577;HMGA1,2:-0.260478758092;GFI1:-0.288003370704;HNF4A_NR2F1,2:-0.293117279586;LMO2:-0.297957700671;SOX2:-0.313831823601;AHR_ARNT_ARNT2:-0.31792481306;T:-0.319872304782;SPI1:-0.325591092356;MYFfamily:-0.360710130651;MEF2{A,B,C,D}:-0.379370254588;MED-1{core}:-0.380066144899;ZNF384:-0.382388631294;SPIB:-0.399017347389;EVI1:-0.423612274102;EGR1..3:-0.4275066337;ATF2:-0.440137375335;OCT4_SOX2{dimer}:-0.446929165645;E2F1..5:-0.454923544507;RREB1:-0.458354852738;HOX{A6,A7,B6,B7}:-0.466163748018;GATA4:-0.472555512607;FOXD3:-0.480216215239;HBP1_HMGB_SSRP1_UBTF:-0.497247032573;SOX5:-0.505761895431;FOXA2:-0.510660348008;NFIL3:-0.515720757653;HAND1,2:-0.552394457797;NR1H4:-0.559136738308;SREBF1,2:-0.559993647838;NR6A1:-0.567464518071;TGIF1:-0.596668302308;SNAI1..3:-0.621547908513;NKX6-1,2:-0.630251632926;ZEB1:-0.64803122591;TEF:-0.649640660762;TOPORS:-0.661931462917;EP300:-0.734415451608;CREB1:-0.74004844094;IRF1,2:-0.741281041356;BREu{core}:-0.750531634136;NFY{A,B,C}:-0.770959305023;IRF7:-0.808406485138;ATF4:-0.821649206732;NKX2-1,4:-0.827327026232;DMAP1_NCOR{1,2}_SMARC:-0.828957406318;FOX{D1,D2}:-0.851221306266;RFX2..5_RFXANK_RFXAP:-0.857622480592;ATF5_CREB3:-0.861628401084;CUX2:-0.87572846511;MYOD1:-0.887396943814;IKZF2:-0.905151299293;FOXO1,3,4:-0.991454921856;NKX2-3_NKX2-5:-0.998031646545;FOXP1:-1.00557069836;CDX1,2,4:-1.00713678935;PDX1:-1.03330111585;PITX1..3:-1.04405066777;FOX{F1,F2,J1}:-1.05469629897;PAX4:-1.05494901249;FOXN1:-1.08582140599;ZBTB16:-1.10885148406;FOXP3:-1.27021228525;BPTF:-1.38292352791;STAT1,3:-1.47639818322;RBPJ:-1.55447558533
|top_motifs=PPARG:1.78263440194;POU3F1..4:1.35826609183;ALX1:1.35781160448;ALX4:1.2056109421;HES1:1.15109548058;PAX1,9:1.05095077035;GTF2A1,2:1.00771868745;ONECUT1,2:0.989181715063;ZBTB6:0.988676026524;ZNF238:0.917293307186;SPZ1:0.849670507755;PBX1:0.831078083612;GCM1,2:0.821313594417;HOX{A5,B5}:0.817353158377;EBF1:0.799104740772;HSF1,2:0.778632792171;FOX{I1,J2}:0.755270379458;TLX1..3_NFIC{dimer}:0.740734336396;TFCP2:0.737208276042;NR5A1,2:0.70792911965;ATF6:0.683058237912;IKZF1:0.67684230879;GLI1..3:0.676675118558;SMAD1..7,9:0.67532774307;HOXA9_MEIS1:0.660083220297;EN1,2:0.654695301285;XCPE1{core}:0.64661578325;TFAP4:0.642081395731;PAX8:0.635966156414;RXRA_VDR{dimer}:0.608859899946;TP53:0.606799282623;NR3C1:0.581731187306;CRX:0.580746424065;FOXL1:0.580444824772;NFE2L2:0.531196133797;GFI1B:0.523623802179;FOXQ1:0.514876122334;NFATC1..3:0.512292816339;UFEwm:0.500468769845;AR:0.500173650134;TBP:0.492698249185;TBX4,5:0.488149436263;ELK1,4_GABP{A,B1}:0.486559401794;TEAD1:0.48243401719;NFE2L1:0.473508136435;TFAP2B:0.448461067583;ZIC1..3:0.436791563135;TFAP2{A,C}:0.425660950837;ZNF148:0.425625878757;CDC5L:0.405420985724;MYBL2:0.360837168543;NKX2-2,8:0.350221612743;TAL1_TCF{3,4,12}:0.347736021835;NANOG{mouse}:0.34007259383;SRF:0.331996111075;PAX5:0.323321907203;RXR{A,B,G}:0.318329591492;GZF1:0.312844986367;BACH2:0.305460734909;KLF4:0.283567170275;JUN:0.275618169423;XBP1:0.271465617341;ZNF423:0.263881146141;FOS_FOS{B,L1}_JUN{B,D}:0.261695719557;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.258813166879;HIF1A:0.250097428826;ESR1:0.228114179639;FOXM1:0.205244537138;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.203478379147;STAT5{A,B}:0.201777746172;LHX3,4:0.195966555248;HMX1:0.193145431375;SOX17:0.17887091425;MAFB:0.142893788068;bHLH_family:0.136895669904;FOSL2:0.133524499331;ESRRA:0.133521549422;NFIX:0.125859822622;ARID5B:0.125327174009;HIC1:0.124486909675;REST:0.122159249162;HLF:0.11304605508;NKX3-2:0.10600615812;HNF1A:0.105377504461;TFDP1:0.105018743211;VSX1,2:0.101515997323;LEF1_TCF7_TCF7L1,2:0.100473047893;DBP:0.074849887157;POU1F1:0.0686345018533;POU6F1:0.0538362305971;AIRE:0.0371156913683;NHLH1,2:0.0356848794365;SP1:0.0114364519047;PAX2:-3.44259787082e-05;MZF1:-0.0109287846138;SOX{8,9,10}:-0.0164672862166;POU2F1..3:-0.0178200493699;ADNP_IRX_SIX_ZHX:-0.0246526278094;MTE{core}:-0.0270528502879;MYB:-0.028997171021;TLX2:-0.0412492581518;NFKB1_REL_RELA:-0.0432549963567;GTF2I:-0.0574438157566;POU5F1:-0.076464250036;NRF1:-0.0997494496421;PRRX1,2:-0.100094158547;PAX3,7:-0.130191137287;STAT2,4,6:-0.147388969803;PAX6:-0.148911137034;YY1:-0.152081070452;NFE2:-0.152382886715;PATZ1:-0.159096313649;PRDM1:-0.168409767601;HOX{A4,D4}:-0.177380194212;MAZ:-0.182976037318;ZNF143:-0.184726174321;NKX3-1:-0.190828796201;ZFP161:-0.196206889963;NANOG:-0.202812716077;ELF1,2,4:-0.209551989285;CEBPA,B_DDIT3:-0.216761239631;ETS1,2:-0.218113525111;MTF1:-0.223641872577;RFX1:-0.22728874544;RUNX1..3:-0.24468645328;GATA6:-0.245887342432;RORA:-0.257962689577;HMGA1,2:-0.260478758092;GFI1:-0.288003370704;HNF4A_NR2F1,2:-0.293117279586;LMO2:-0.297957700671;SOX2:-0.313831823601;AHR_ARNT_ARNT2:-0.31792481306;T:-0.319872304782;SPI1:-0.325591092356;MYFfamily:-0.360710130651;MEF2{A,B,C,D}:-0.379370254588;MED-1{core}:-0.380066144899;ZNF384:-0.382388631294;SPIB:-0.399017347389;EVI1:-0.423612274102;EGR1..3:-0.4275066337;ATF2:-0.440137375335;OCT4_SOX2{dimer}:-0.446929165645;E2F1..5:-0.454923544507;RREB1:-0.458354852738;HOX{A6,A7,B6,B7}:-0.466163748018;GATA4:-0.472555512607;FOXD3:-0.480216215239;HBP1_HMGB_SSRP1_UBTF:-0.497247032573;SOX5:-0.505761895431;FOXA2:-0.510660348008;NFIL3:-0.515720757653;HAND1,2:-0.552394457797;NR1H4:-0.559136738308;SREBF1,2:-0.559993647838;NR6A1:-0.567464518071;TGIF1:-0.596668302308;SNAI1..3:-0.621547908513;NKX6-1,2:-0.630251632926;ZEB1:-0.64803122591;TEF:-0.649640660762;TOPORS:-0.661931462917;EP300:-0.734415451608;CREB1:-0.74004844094;IRF1,2:-0.741281041356;BREu{core}:-0.750531634136;NFY{A,B,C}:-0.770959305023;IRF7:-0.808406485138;ATF4:-0.821649206732;NKX2-1,4:-0.827327026232;DMAP1_NCOR{1,2}_SMARC:-0.828957406318;FOX{D1,D2}:-0.851221306266;RFX2..5_RFXANK_RFXAP:-0.857622480592;ATF5_CREB3:-0.861628401084;CUX2:-0.87572846511;MYOD1:-0.887396943814;IKZF2:-0.905151299293;FOXO1,3,4:-0.991454921856;NKX2-3_NKX2-5:-0.998031646545;FOXP1:-1.00557069836;CDX1,2,4:-1.00713678935;PDX1:-1.03330111585;PITX1..3:-1.04405066777;FOX{F1,F2,J1}:-1.05469629897;PAX4:-1.05494901249;FOXN1:-1.08582140599;ZBTB16:-1.10885148406;FOXP3:-1.27021228525;BPTF:-1.38292352791;STAT1,3:-1.47639818322;RBPJ:-1.55447558533
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008380
|accession_numbers=DRX008488;DRR009360;DRZ000785;DRZ002170;CAGE
|library_id=CNhs12045
}}
}}

Revision as of 14:43, 17 October 2013


Name:Smooth Muscle Cells - Coronary Artery, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12045
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuecoronary artery
dev stage39 years old adult
sexmale
age39
cell typesmooth muscle cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1401
catalog numberCA350-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008380
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12045 CAGE DRX008488 DRR009360
Accession ID Hg19

Library idBAMCTSS
CNhs12045 DRZ000785 DRZ002170
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.156
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0424
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.355
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0388
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.301
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.467
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.355
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.154
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.189
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.108
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00613
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0228
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.153
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.153
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.811
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.029
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.355
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.265
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12045

Jaspar motifP-value
MA0002.20.975
MA0003.10.247
MA0004.10.761
MA0006.10.183
MA0007.10.224
MA0009.10.834
MA0014.10.808
MA0017.10.554
MA0018.20.00127
MA0019.10.244
MA0024.10.00279
MA0025.10.4
MA0027.10.783
MA0028.10.316
MA0029.10.312
MA0030.10.0443
MA0031.10.00303
MA0035.20.935
MA0038.10.12
MA0039.20.886
MA0040.10.358
MA0041.10.288
MA0042.10.871
MA0043.10.0581
MA0046.10.962
MA0047.20.523
MA0048.10.488
MA0050.11.23608e-5
MA0051.10.0351
MA0052.10.0466
MA0055.10.118
MA0057.10.496
MA0058.10.427
MA0059.10.445
MA0060.10.00327
MA0061.10.437
MA0062.20.941
MA0065.20.32
MA0066.10.338
MA0067.10.0205
MA0068.10.904
MA0069.10.528
MA0070.10.763
MA0071.10.568
MA0072.10.551
MA0073.10.693
MA0074.10.0922
MA0076.10.66
MA0077.10.198
MA0078.10.0644
MA0079.20.492
MA0080.20.00101
MA0081.10.5
MA0083.10.024
MA0084.10.181
MA0087.10.31
MA0088.10.41
MA0090.10.0185
MA0091.10.108
MA0092.10.101
MA0093.10.787
MA0099.24.76626e-7
MA0100.10.148
MA0101.10.441
MA0102.20.2
MA0103.10.163
MA0104.20.384
MA0105.10.366
MA0106.10.0295
MA0107.10.435
MA0108.20.0235
MA0111.10.0716
MA0112.20.0363
MA0113.10.27
MA0114.10.737
MA0115.10.424
MA0116.10.836
MA0117.10.315
MA0119.10.293
MA0122.10.969
MA0124.10.256
MA0125.10.245
MA0131.10.348
MA0135.10.938
MA0136.10.00739
MA0137.20.227
MA0138.20.878
MA0139.10.967
MA0140.10.83
MA0141.10.164
MA0142.10.362
MA0143.10.673
MA0144.10.893
MA0145.10.161
MA0146.10.34
MA0147.10.703
MA0148.10.605
MA0149.10.798
MA0150.10.323
MA0152.10.243
MA0153.10.667
MA0154.10.292
MA0155.10.0193
MA0156.10.696
MA0157.10.109
MA0159.10.414
MA0160.10.945
MA0162.10.0118
MA0163.10.0503
MA0164.10.586
MA0258.10.222
MA0259.10.504



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12045

Novel motifP-value
10.833
100.211
1000.816
1010.197
1020.987
1030.143
1040.515
1050.487
1060.351
1070.0804
1080.28
1090.0696
110.116
1100.21
1110.339
1120.783
1130.0256
1140.536
1150.0817
1160.039
1170.807
1180.714
1190.159
120.905
1200.0329
1210.959
1220.97
1230.0186
1240.334
1250.709
1260.699
1270.719
1280.283
1290.704
130.648
1300.239
1310.791
1320.867
1330.417
1340.238
1350.11
1360.152
1370.632
1380.511
1390.397
140.755
1400.668
1410.713
1420.426
1430.00959
1440.903
1450.417
1460.421
1470.184
1480.615
1490.113
150.687
1500.134
1510.634
1520.00995
1530.249
1540.418
1550.117
1560.962
1570.407
1580.0542
1590.486
160.123
1600.309
1610.55
1620.902
1630.947
1640.473
1650.534
1660.999
1670.618
1680.976
1690.0828
170.128
180.0717
190.227
20.0874
200.365
210.967
220.192
230.12
240.279
250.388
260.214
270.454
280.267
290.481
30.58
300.216
310.587
322.0821e-5
330.891
340.194
350.842
360.289
370.095
380.653
390.552
40.825
400.541
410.283
420.98
430.517
440.161
450.297
460.258
470.588
480.38
490.97
50.924
500.607
510.73
520.901
530.367
540.686
550.325
560.886
570.942
580.4
590.0554
60.989
600.851
610.923
620.898
630.482
640.7
650.0655
660.856
670.429
680.383
690.647
70.879
700.658
710.878
720.728
730.00118
740.56
750.681
760.58
775.83809e-4
780.685
790.146
80.0824
800.875
810.852
820.762
830.927
840.804
850.246
860.599
870.00267
880.712
890.00258
90.246
900.619
910.832
920.307
930.0656
940.592
950.0241
960.653
970.41
980.715
990.0124



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12045


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000359 (vascular associated smooth muscle cell)
0002592 (smooth muscle cell of the coronary artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0004573 (systemic artery)
0003498 (heart blood vessel)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0005985 (coronary vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0001621 (coronary artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000172 (human smooth muscle cell of coronary artery sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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