FF:11396-118D1: Difference between revisions

Revision as of 15:11, 15 May 2017

Name:	Smooth Muscle Cells - Colonic, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12007
Sample type:	primary cells
Genomic View:	UCSC
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	colon
dev stage	fetus
sex	unknown
age	fetal
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1147
catalog number	SC2945
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004795

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12007		CAGE		DRX008485		DRR009357

Accession ID Hg19

Library id		BAM		CTSS
CNhs12007		DRZ000782		DRZ002167

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0199
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.279
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.131
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0919
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0175
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.127
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0484
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.393
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0478
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.19
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.228
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0919
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.131
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00733
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.274
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0919
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0919
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0484
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.621
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.536
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.354
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.494
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.337
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12007

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.012
MA0003.1	MA0003.1	0.657
MA0004.1	MA0004.1	0.963
MA0006.1	MA0006.1	0.399
MA0007.1	MA0007.1	0.421
MA0009.1	MA0009.1	0.12
MA0014.1	MA0014.1	0.722
MA0017.1	MA0017.1	0.269
MA0018.2	MA0018.2	0.015
MA0019.1	MA0019.1	0.136
MA0024.1	MA0024.1	0.0582
MA0025.1	MA0025.1	0.0141
MA0027.1	MA0027.1	0.947
MA0028.1	MA0028.1	0.234
MA0029.1	MA0029.1	0.931
MA0030.1	MA0030.1	0.088
MA0031.1	MA0031.1	0.0189
MA0035.2	MA0035.2	0.0736
MA0038.1	MA0038.1	0.104
MA0039.2	MA0039.2	0.2
MA0040.1	MA0040.1	0.729
MA0041.1	MA0041.1	0.626
MA0042.1	MA0042.1	0.491
MA0043.1	MA0043.1	0.054
MA0046.1	MA0046.1	0.443
MA0047.2	MA0047.2	0.0358
MA0048.1	MA0048.1	0.0171
MA0050.1	MA0050.1	1.01529e-4
MA0051.1	MA0051.1	3.48145e-4
MA0052.1	MA0052.1	0.00881
MA0055.1	MA0055.1	0.0295
MA0057.1	MA0057.1	0.822
MA0058.1	MA0058.1	0.998
MA0059.1	MA0059.1	0.775
MA0060.1	MA0060.1	0.00165
MA0061.1	MA0061.1	1.45858e-5
MA0062.2	MA0062.2	0.0648
MA0065.2	MA0065.2	0.18
MA0066.1	MA0066.1	0.612
MA0067.1	MA0067.1	0.0168
MA0068.1	MA0068.1	0.121
MA0069.1	MA0069.1	0.169
MA0070.1	MA0070.1	0.388
MA0071.1	MA0071.1	0.586
MA0072.1	MA0072.1	0.213
MA0073.1	MA0073.1	0.528
MA0074.1	MA0074.1	0.456
MA0076.1	MA0076.1	0.706
MA0077.1	MA0077.1	0.472
MA0078.1	MA0078.1	0.832
MA0079.2	MA0079.2	0.606
MA0080.2	MA0080.2	6.50224e-13
MA0081.1	MA0081.1	0.0319
MA0083.1	MA0083.1	0.0383
MA0084.1	MA0084.1	0.332
MA0087.1	MA0087.1	0.726
MA0088.1	MA0088.1	0.0651
MA0090.1	MA0090.1	0.00378
MA0091.1	MA0091.1	0.0447
MA0092.1	MA0092.1	0.936
MA0093.1	MA0093.1	0.845
MA0099.2	MA0099.2	6.64118e-6
MA0100.1	MA0100.1	0.75
MA0101.1	MA0101.1	0.00318
MA0102.2	MA0102.2	0.224
MA0103.1	MA0103.1	1.81982e-4
MA0104.2	MA0104.2	0.175
MA0105.1	MA0105.1	7.24419e-4
MA0106.1	MA0106.1	0.0144
MA0107.1	MA0107.1	1.47627e-4
MA0108.2	MA0108.2	0.0928
MA0111.1	MA0111.1	0.869
MA0112.2	MA0112.2	0.644
MA0113.1	MA0113.1	0.924
MA0114.1	MA0114.1	0.444
MA0115.1	MA0115.1	0.296
MA0116.1	MA0116.1	0.126
MA0117.1	MA0117.1	0.487
MA0119.1	MA0119.1	0.718
MA0122.1	MA0122.1	0.0942
MA0124.1	MA0124.1	0.345
MA0125.1	MA0125.1	0.314
MA0131.1	MA0131.1	0.988
MA0135.1	MA0135.1	0.24
MA0136.1	MA0136.1	5.34058e-12
MA0137.2	MA0137.2	0.395
MA0138.2	MA0138.2	0.434
MA0139.1	MA0139.1	0.277
MA0140.1	MA0140.1	0.534
MA0141.1	MA0141.1	0.7
MA0142.1	MA0142.1	0.164
MA0143.1	MA0143.1	0.639
MA0144.1	MA0144.1	0.295
MA0145.1	MA0145.1	0.958
MA0146.1	MA0146.1	0.487
MA0147.1	MA0147.1	0.145
MA0148.1	MA0148.1	0.0844
MA0149.1	MA0149.1	0.352
MA0150.1	MA0150.1	0.00226
MA0152.1	MA0152.1	0.0912
MA0153.1	MA0153.1	0.313
MA0154.1	MA0154.1	0.0461
MA0155.1	MA0155.1	0.817
MA0156.1	MA0156.1	4.00235e-7
MA0157.1	MA0157.1	0.0452
MA0159.1	MA0159.1	0.0225
MA0160.1	MA0160.1	0.186
MA0162.1	MA0162.1	0.0401
MA0163.1	MA0163.1	0.32
MA0164.1	MA0164.1	0.76
MA0258.1	MA0258.1	0.196
MA0259.1	MA0259.1	0.596

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12007

Novel motif	Logo	P-value
1	1	0.338
10	10	0.977
100	100	0.156
101	101	0.43
102	102	0.156
103	103	0.745
104	104	0.863
105	105	0.169
106	106	0.134
107	107	0.911
108	108	0.614
109	109	0.418
11	11	0.742
110	110	0.476
111	111	0.38
112	112	0.218
113	113	0.13
114	114	0.217
115	115	0.125
116	116	0.16
117	117	0.612
118	118	0.995
119	119	0.117
12	12	0.266
120	120	0.204
121	121	0.345
122	122	0.019
123	123	0.0476
124	124	0.0641
125	125	0.265
126	126	0.753
127	127	0.233
128	128	0.706
129	129	0.0455
13	13	0.861
130	130	0.0137
131	131	0.577
132	132	0.948
133	133	0.913
134	134	0.446
135	135	0.386
136	136	0.0863
137	137	0.0226
138	138	0.121
139	139	0.113
14	14	0.126
140	140	0.227
141	141	0.318
142	142	0.899
143	143	0.343
144	144	0.827
145	145	0.544
146	146	0.802
147	147	0.438
148	148	0.279
149	149	0.803
15	15	0.0703
150	150	0.768
151	151	0.919
152	152	0.138
153	153	0.389
154	154	0.819
155	155	5.98858e-4
156	156	0.517
157	157	0.409
158	158	0.00944
159	159	0.177
16	16	0.634
160	160	0.911
161	161	0.731
162	162	0.238
163	163	0.947
164	164	0.285
165	165	0.42
166	166	0.0385
167	167	0.321
168	168	0.0929
169	169	0.616
17	17	0.605
18	18	0.644
19	19	0.436
2	2	0.905
20	20	0.74
21	21	0.586
22	22	0.83
23	23	0.203
24	24	0.584
25	25	0.14
26	26	0.418
27	27	0.703
28	28	0.166
29	29	0.743
3	3	0.656
30	30	0.617
31	31	0.92
32	32	5.89085e-11
33	33	0.971
34	34	0.989
35	35	0.418
36	36	0.0543
37	37	0.893
38	38	0.385
39	39	0.658
4	4	0.145
40	40	0.685
41	41	0.0073
42	42	0.329
43	43	0.274
44	44	0.659
45	45	0.185
46	46	0.323
47	47	0.607
48	48	0.66
49	49	0.107
5	5	0.181
50	50	0.672
51	51	0.83
52	52	0.604
53	53	0.125
54	54	0.688
55	55	0.58
56	56	0.761
57	57	0.484
58	58	0.0859
59	59	0.537
6	6	0.632
60	60	0.15
61	61	0.906
62	62	0.055
63	63	0.625
64	64	0.572
65	65	0.525
66	66	0.611
67	67	0.86
68	68	0.83
69	69	0.709
7	7	0.216
70	70	0.00106
71	71	0.908
72	72	0.457
73	73	0.123
74	74	0.0717
75	75	0.42
76	76	0.55
77	77	0.777
78	78	0.271
79	79	0.0504
8	8	0.809
80	80	0.0528
81	81	0.486
82	82	0.121
83	83	0.987
84	84	0.622
85	85	0.285
86	86	0.578
87	87	0.0809
88	88	0.532
89	89	0.646
9	9	0.91
90	90	0.576
91	91	0.513
92	92	0.288
93	93	0.0751
94	94	0.51
95	95	0.257
96	96	0.061
97	97	0.905
98	98	0.174
99	99	6.63608e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12007

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000181 human smooth muscle of colon sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002504 (enteric smooth muscle cell)
1000279 (smooth muscle cell of large intestine)
1000280 (smooth muscle cell of colon)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001155 (colon)
0001135 (smooth muscle tissue)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001555 (digestive tract)
0000059 (large intestine)
0002204 (musculoskeletal system)
0005409 (gastrointestinal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000180 (human smooth muscle cell of intestine sample)
0000181 (human smooth muscle of colon sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.39!244.34!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.78!71.98!FOXF1;;chr4:174451370..174451387,-!p1@HAND2!1.45!26.86!HAND2;;chr15:42749722..42749739,-!p2@ZFP106!1.43!46.06!ZFP106;;chr5:134369879..134369898,-!p2@PITX1!1.39!23.80!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.29!28.51!PITX1;;chr7:27224842..27224872,-!p1@HOXA11!1.27!17.55!HOXA11;;chr11:46299199..46299233,+!p1@CREB3L1!1.26!87.77!CREB3L1;;chr7:27192185..27192209,-!p1@HOXA3!1.18!14.26!HOXA3;;chr2:185463247..185463263,+!p1@ZNF804A!1.17!24.27!ZNF804A;;chr7:27224795..27224840,-!p2@HOXA11!1.17!13.67!HOXA11;;chr5:92918919..92918942,+!p1@NR2F1!1.15!58.79!NR2F1;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.19!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.28!TWIST1;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.75!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!1.07!10.84!HOXB6;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.32!TCF12;;chr19:46801639..46801699,+!p1@HIF3A!1.05!10.13!HIF3A;;chr11:46299539..46299620,+!p2@CREB3L1!1.01!15.90!CREB3L1;;chr10:101292684..101292706,+!p1@NKX2-3!1.01!9.31!NKX2-3;;chr7:27205136..27205164,-!p1@HOXA9!1.01!9.19!HOXA9;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.41!HMGA2;;chr8:25902876..25902936,-!p1@EBF2!0.95!7.89!EBF2;;chr2:176969228..176969260,+!p1@HOXD11!0.93!7.42!HOXD11;;chr19:45260775..45260838,+!p5@BCL3!0.92!9.66!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.91!7.89!NR2F1;;chr14:62162285..62162296,+!p3@HIF1A!0.89!36.76!HIF1A;;chr17:46622114..46622138,-!p4@HOXB2!0.89!10.60!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.89!7.89!BNC1;;chr17:46667594..46667619,-!p1@HOXB3!0.89!6.72!HOXB3;;chr7:27205106..27205134,-!p2@HOXA9!0.88!6.60!HOXA9;;chr12:66218836..66218888,+!p1@HMGA2!0.87!64.09!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!0.87!6.36!SOX11;;chr2:66662281..66662308,+!p1@MEIS1!0.86!22.97!MEIS1;;chr8:49833948..49833973,-!p2@SNAI2!0.85!41.47!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.38!TWIST2;;chr14:62162258..62162269,+!p2@HIF1A!0.84!60.20!HIF1A;;chr15:37392724..37392757,-!p1@MEIS2!0.84!28.98!MEIS2;;chr7:27213893..27213954,-!p1@HOXA10!0.84!5.89!HOXA10;;chr12:66218212..66218244,+!p5@HMGA2!0.83!8.60!HMGA2;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.72!HOXB2;;chr17:1959369..1959388,+!p2@HIC1!0.80!14.96!HIC1;;chr18:19749541..19749557,+!p1@GATA6!0.76!16.14!GATA6;;chr17:59477233..59477263,+!p1@TBX2!0.76!15.79!TBX2;;chr2:121493425..121493474,+!p1@GLI2!0.76!11.19!GLI2;;chr9:16870659..16870675,-!p2@BNC2!0.76!6.01!BNC2;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.38!SNAI2;;chr2:19558373..19558392,-!p1@OSR1!0.73!12.96!OSR1;;chr2:66662249..66662267,+!p2@MEIS1!0.72!18.14!MEIS1;;chr7:19157043..19157088,-!p2@TWIST1!0.72!11.55!TWIST1;;chr17:46675558..46675577,-!p2@HOXB6!0.72!4.24!HOXB6;;chr2:176969179..176969226,+!p2@HOXD11!0.72!4.24!HOXD11;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.60!HMGA2;;chr10:131762504..131762555,-!p1@EBF3!0.70!4.01!EBF3;;chr9:16870710..16870763,-!p1@BNC2!0.69!7.19!BNC2;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.48!TCF4;;chr20:50721803..50721857,-!p2@ZFP64!0.68!6.36!ZFP64;;chr7:27196267..27196311,-!p1@HOXA7!0.68!3.77!HOXA7;;chr2:239756739..239756755,+!p2@TWIST2!0.67!6.72!TWIST2;;chr17:46675420..46675465,-!p3@HOXB6!0.67!4.36!HOXB6;;chr5:92918894..92918912,+!p2@NR2F1!0.66!13.19!NR2F1;;chr17:59477275..59477286,+!p3@TBX2!0.66!4.95!TBX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.66!3.89!GLIS1;;chr11:46299443..46299459,+!p4@CREB3L1!0.66!3.53!CREB3L1;;chr8:106330656..106330684,+!p1@ZFPM2!0.65!10.25!ZFPM2;;chr11:61520075..61520136,+!p1@C11orf9!0.65!8.13!C11orf9;;chr5:92919375..92919438,+!p6@NR2F1!0.65!3.77!NR2F1;;chr12:66218904..66218913,+!p11@HMGA2!0.65!3.42!HMGA2;;chr1:164528410..164528428,+!p1@PBX1!0.64!29.45!PBX1;;chr17:59477197..59477212,+!p2@TBX2!0.64!6.36!TBX2;;chr18:19749386..19749404,+!p2@GATA6!0.64!5.18!GATA6;;chr17:46687959..46688007,-!p2@HOXB7!0.64!4.95!HOXB7;;chr17:1958388..1958404,+!p1@HIC1!0.63!24.50!HIC1;;chr7:42276787..42276815,-!p1@GLI3!0.63!9.90!GLI3;;chr1:164528445..164528459,+!p2@PBX1!0.62!11.31!PBX1;;chr17:46621937..46621966,-!p2@HOXB2!0.62!9.78!HOXB2;;chr12:66218573..66218596,+!p7@HMGA2!0.62!5.07!HMGA2;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.01!TBX18;;chr17:46622205..46622218,-!p3@HOXB2!0.62!3.77!HOXB2;;chr12:24715376..24715432,-!p1@SOX5!0.61!4.12!SOX5;;chr17:46667628..46667642,-!p2@HOXB3!0.61!3.06!HOXB3;;chr6:45390025..45390076,+!p2@RUNX2!0.60!8.25!RUNX2;;chr2:66662895..66662907,+!p3@MEIS1!0.59!3.77!MEIS1;;chr14:62162224..62162254,+!p1@HIF1A!0.58!500.70!HIF1A;;chr2:121493492..121493537,+!p2@GLI2!0.58!5.18!GLI2;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.36!HOXB7;;chr15:37392094..37392116,-!p6@MEIS2!0.58!3.65!MEIS2;;chr4:174451350..174451363,-!p3@HAND2!0.58!2.83!HAND2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.58!2.83!PEG3;;chr20:42543441..42543497,+!p1@TOX2!0.57!14.73!TOX2;;chr5:92919100..92919135,+!p3@NR2F1!0.57!3.42!NR2F1;;chr11:32457075..32457095,-!p1@WT1!0.57!2.71!WT1;;chr8:48650715..48650735,-!p1@CEBPD!0.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chr5:158524625..158524669,-!p6@EBF1!0.13!0.35!EBF1;;chr5:158527104..158527135,-!p4@EBF1!0.13!0.35!EBF1;;chr6:108977520..108977534,+!p7@FOXO3!0.13!0.35!FOXO3;;chr6:155635818..155635834,-!p4@TFB1M!0.13!0.35!TFB1M;;chr6:35464729..35464738,-!p3@TEAD3!0.13!0.35!TEAD3;;chr6:45389893..45389902,+!p21@RUNX2!0.13!0.35!RUNX2;;chr7:114055245..114055258,+!p7@FOXP2!0.13!0.35!FOXP2;;chr7:137565269..137565282,-!p16@CREB3L2!0.13!0.35!CREB3L2;;chr7:27170359..27170381,-!p1@HOXA4!0.13!0.35!HOXA4;;chr7:27183114..27183138,-!p3@HOXA5!0.13!0.35!HOXA5;;chr7:27183156..27183167,-!p8@HOXA5!0.13!0.35!HOXA5;;chr7:27183263..27183284,-!p2@HOXA5!0.13!0.35!HOXA5;;chr7:27205089..27205096,-!p4@HOXA9!0.13!0.35!HOXA9;;chr7:27213872..27213886,-!p4@HOXA10!0.13!0.35!HOXA10;;chr7:27239740..27239759,-!p2@HOXA13!0.13!0.35!HOXA13;;chr7:42276920..42276931,-!p8@GLI3!0.13!0.35!GLI3;;chr7:99680302..99680329,-!p5@ZNF3!0.13!0.35!ZNF3;;chr8:106330823..106330836,+!p3@ZFPM2!0.13!0.35!ZFPM2;;chr8:42698292..42698321,-!p8@THAP1!0.13!0.35!THAP1;;chr8:57123898..57123909,-!p3@PLAG1!0.13!0.35!PLAG1;;chr8:93107451..93107468,-!p2@RUNX1T1!0.13!0.35!RUNX1T1;;chr8:93115445..93115462,-!p7@RUNX1T1!0.13!0.35!RUNX1T1;;chr1:226595741..226595818,-!p1@PARP1!0.12!61.38!PARP1;;chr2:242576460..242576600,-!p1@THAP4!0.12!17.44!THAP4;;chr1:200379129..200379174,-!p1@ZNF281!0.12!13.90!ZNF281;;chr6:43139153..43139232,+!p1@SRF!0.12!10.84!SRF;;chr19:53193731..53193767,-!p1@ZNF83!0.12!10.01!ZNF83;;chr4:10459009..10459061,-!p1@ZNF518B!0.12!9.90!ZNF518B;;chr1:44679113..44679152,+!p1@DMAP1!0.12!8.84!DMAP1;;chr20:48599506..48599526,+!p1@SNAI1!0.12!6.95!SNAI1;;chr3:44519131..44519186,-!p1@ZNF445!0.12!5.89!ZNF445;;chr16:4817129..4817198,-!p1@ZNF500!0.12!5.77!ZNF500;;chr19:56152437..56152467,+!p3@ZNF580!0.12!5.42!ZNF580;;chr7:138666053..138666146,-!p1@KIAA1549!0.12!4.12!KIAA1549;;chr6:35310363..35310382,+!p3@PPARD!0.12!3.65!PPARD;;chr19:24097675..24097699,+!p1@ZNF726!0.12!3.18!ZNF726;;chr14:89883412..89883478,-!p3@FOXN3!0.12!3.06!FOXN3;;chr19:45251805..45251840,+!p4@BCL3!0.12!2.95!BCL3;;chr1:161736140..161736151,+!p3@ATF6!0.12!2.95!ATF6;;chr19:44860820..44860843,-!p1@ZFP112,p1@ZNF285!0.12!2.47!ZFP112;;chr1:8877735..8877760,-!p8@RERE!0.12!2.36!RERE;;chr2:42795651..42795676,+!p3@MTA3!0.12!2.36!MTA3;;chr5:150284532..150284549,-!p1@ZNF300!0.12!1.65!ZNF300;;chr11:47270436..47270464,+!p2@NR1H3!0.12!1.65!NR1H3;;chr8:86089417..86089440,+!p2@E2F5!0.12!1.53!E2F5;;chr11:130184311..130184362,-!p4@ZBTB44!0.12!1.30!ZBTB44;;chr16:3185051..3185068,+!p3@ZNF213!0.12!1.06!ZNF213;;chr17:41622925..41622976,-!p3@ETV4!0.12!0.94!ETV4;;chr18:56530136..56530199,+!p3@ZNF532!0.12!0.94!ZNF532;;chr19:18391708..18391737,-!p7@JUND!0.12!0.94!JUND;;chr1:158985493..158985535,+!p4@IFI16!0.12!0.94!IFI16;;chr22:42269885..42269899,+!p4@SREBF2!0.12!0.94!SREBF2;;chrX:131623932..131623964,-!p7@MBNL3!0.12!0.82!MBNL3;;chr1:42800614..42800649,-!p5@FOXJ3!0.12!0.82!FOXJ3;;chr1:61924375..61924380,+!p6@NFIA!0.12!0.82!NFIA;;chr1:91487013..91487070,-!p6@ZNF644!0.12!0.82!ZNF644;;chr2:46612334..46612349,+!p6@EPAS1!0.12!0.71!EPAS1;;chr3:170076314..170076334,+!p2@SKIL!0.12!0.71!SKIL;;chr4:81118647..81118666,+!p1@PRDM8!0.12!0.71!PRDM8;;chr18:3449330..3449344,+!p10@TGIF1!0.12!0.71!TGIF1;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000280;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
 |ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=

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FF:11396-118D1: Difference between revisions

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Revision as of 15:11, 15 May 2017

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0