Personal tools

FF:13469-144I4: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|id=FF:13469-144I4
|ancestors_in_anatomy_facet=
|name=Myoblast differentiation to myotubes, day00, control donor1
|sample_id=13469
|rna_tube_id=144I4
|rna_box=144
|rna_position=I4
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=skeletal muscle
|sample_donor(cell lot)=CN1_Mb
|sample_sex=female
|sample_age=3 years old
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.14
|rna_od260/280=2.07
|sample_cell_type=myoblast
|sample_cell_line=
|sample_collaboration=Beatrice Bodega/Valerio Orlando
|sample_experimental_condition=
|sample_disease=normal control
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=14.07
|rna_concentration=1.17
|sample_note=
|profile_hcage=CNhs13847,LSID1092,release014,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|comment=
|created_by=
|creation_date=
|def=
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 33:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=TFDP1:1.89856963808;PAX8:1.62016126467;VSX1,2:1.43753377083;NKX2-1,4:1.22846100682;SPZ1:1.18059145387;PDX1:1.14822026271;TFAP4:1.14485598029;TFAP2{A,C}:1.13090384768;HOX{A4,D4}:1.06979267821;TLX1..3_NFIC{dimer}:1.00028470519;LEF1_TCF7_TCF7L1,2:0.983029651897;NFIX:0.948128957041;PAX1,9:0.875659511033;POU1F1:0.862905818614;ZNF384:0.848743210514;POU6F1:0.846853910981;SRF:0.832346461061;TEAD1:0.832306250879;CDC5L:0.820687826483;HOX{A5,B5}:0.782424058761;GATA4:0.772139480589;NKX3-1:0.765455634911;NR6A1:0.734802481342;ADNP_IRX_SIX_ZHX:0.732125282456;GZF1:0.72897881842;MYBL2:0.71952066963;XBP1:0.716073929717;E2F1..5:0.710803682466;GFI1B:0.704375221257;POU5F1:0.691620771953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.665219279213;HBP1_HMGB_SSRP1_UBTF:0.665056195728;TAL1_TCF{3,4,12}:0.658482192558;TFAP2B:0.623486279832;SOX17:0.620357185262;MZF1:0.59783807752;GFI1:0.58068627353;NR3C1:0.568003173838;FOXD3:0.560859237115;NKX6-1,2:0.549688802309;ZNF238:0.546832414535;NHLH1,2:0.546593169474;SOX{8,9,10}:0.495664512017;HOX{A6,A7,B6,B7}:0.482501432966;NKX2-3_NKX2-5:0.47123078206;RORA:0.46799258413;EGR1..3:0.46711387626;PAX4:0.462697580489;MTF1:0.457671437072;HIC1:0.450104679371;GTF2A1,2:0.437685443588;NFATC1..3:0.435298079314;POU3F1..4:0.427135015925;KLF4:0.424698064309;PRDM1:0.422927697481;LHX3,4:0.416455829932;AR:0.397898443029;SOX2:0.397594078796;NR5A1,2:0.376827138042;ZFP161:0.362087832062;PRRX1,2:0.361477353832;GCM1,2:0.349643398442;TBX4,5:0.342015462503;NFE2L2:0.3393949418;FOSL2:0.333070841417;GTF2I:0.328853581988;TFCP2:0.32800740858;AHR_ARNT_ARNT2:0.299346400358;FOS_FOS{B,L1}_JUN{B,D}:0.281339144432;MTE{core}:0.269890565055;ALX1:0.262769144462;MEF2{A,B,C,D}:0.259843546333;EN1,2:0.235520050447;EVI1:0.206112556071;HSF1,2:0.195215021301;RFX1:0.17602663817;JUN:0.172240188357;GLI1..3:0.158131296853;HOXA9_MEIS1:0.148273032364;DMAP1_NCOR{1,2}_SMARC:0.145240452296;NFIL3:0.144018051762;CDX1,2,4:0.139037031145;BACH2:0.138969408122;BREu{core}:0.130702007369;CUX2:0.130642108112;MED-1{core}:0.130297223201;PBX1:0.120190774644;HNF1A:0.117558380323;CREB1:0.116090436069;RUNX1..3:0.113843248645;NRF1:0.065002395393;MYFfamily:0.0518722862867;MAZ:0.0510232344968;PPARG:0.0316367669214;TBP:0.0270316961337;HES1:0.0167671469549;FOXA2:0.00370975662904;NFE2:0.000531981769745;ATF6:-0.00959715843629;ZBTB6:-0.0111879628477;STAT2,4,6:-0.0148607252273;ZNF148:-0.01628383406;REST:-0.023311300532;RXR{A,B,G}:-0.024701761489;HNF4A_NR2F1,2:-0.0253162679424;PATZ1:-0.0336231249589;ZNF143:-0.0374688883707;PAX3,7:-0.0550549728123;MYB:-0.059037618476;ZIC1..3:-0.066719414247;NANOG{mouse}:-0.0715307512227;NFE2L1:-0.0749399921209;RREB1:-0.078156650156;SMAD1..7,9:-0.0881781375427;PAX6:-0.103891217885;T:-0.104911737981;HLF:-0.105517317374;RFX2..5_RFXANK_RFXAP:-0.110460905229;PITX1..3:-0.114686070958;POU2F1..3:-0.1171092422;TGIF1:-0.129774230842;ONECUT1,2:-0.130720996106;FOXQ1:-0.133783999198;EBF1:-0.141004823111;GATA6:-0.142239157628;NFY{A,B,C}:-0.152213642602;ALX4:-0.15272455523;HAND1,2:-0.179424009605;STAT5{A,B}:-0.187073435079;RXRA_VDR{dimer}:-0.217261256712;TP53:-0.231773890931;SREBF1,2:-0.235577140498;ZBTB16:-0.237448427982;DBP:-0.249183474998;NR1H4:-0.249247022401;CEBPA,B_DDIT3:-0.257016707543;MAFB:-0.288689058761;CRX:-0.307177980075;XCPE1{core}:-0.327550089022;ZNF423:-0.346743001445;NFKB1_REL_RELA:-0.360679054645;FOXO1,3,4:-0.383384675623;HMGA1,2:-0.390455252776;ESRRA:-0.395060654534;OCT4_SOX2{dimer}:-0.396381445804;IKZF1:-0.421172704069;IKZF2:-0.429629454119;SPIB:-0.437721526994;NANOG:-0.446394329188;IRF1,2:-0.451106865018;IRF7:-0.456418872036;ESR1:-0.46954647759;ETS1,2:-0.491011315717;SOX5:-0.491558719608;FOX{F1,F2,J1}:-0.522369406268;PAX5:-0.522857863683;SPI1:-0.525478333858;NKX3-2:-0.548355791856;UFEwm:-0.550278224169;LMO2:-0.578799488183;PAX2:-0.61254460971;ATF5_CREB3:-0.619661934575;HMX1:-0.63255983154;bHLH_family:-0.637078557737;FOXL1:-0.648098744478;FOXP3:-0.654397225454;SP1:-0.655061070144;ATF2:-0.664965541517;ELK1,4_GABP{A,B1}:-0.66789876379;AIRE:-0.67910407151;ELF1,2,4:-0.7007750003;FOX{I1,J2}:-0.738753633407;FOX{D1,D2}:-0.740712898543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.747096089992;TLX2:-0.747542389551;ZEB1:-0.765725959467;ATF4:-0.768632370075;FOXN1:-0.771298445866;MYOD1:-0.827986121122;YY1:-0.833305591566;SNAI1..3:-0.868867124884;HIF1A:-0.887300714656;FOXP1:-0.909876929442;FOXM1:-0.962700056335;STAT1,3:-0.969337924819;BPTF:-0.970227966435;ARID5B:-0.970966808869;NKX2-2,8:-0.981137292406;TEF:-1.02228248004;TOPORS:-1.04138959857;RBPJ:-1.07822938386;EP300:-1.15783808773
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|id=FF:13469-144I4
|is_a=FF:0000210;;FF:0200006
|is_a=FF:0000210;;FF:0200006
|name=Myoblast differentiation to myotubes, day00, control donor1
|namespace=
|namespace=
|part_of=
|part_of=
|profile_cagescan=
|profile_hcage=CNhs13847,LSID1092,release014,COMPLETED
|profile_rnaseq=
|profile_srnaseq=
|rna_box=144
|rna_catalog_number=
|rna_concentration=1.17
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.14
|rna_od260/280=2.07
|rna_position=I4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=144I4
|rna_weight_ug=14.07
|sample_age=3 years old
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=myoblast
|sample_collaboration=Beatrice Bodega/Valerio Orlando
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=normal control
|sample_donor(cell lot)=CN1_Mb
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=13469
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skeletal muscle
|top_motifs=TFDP1:1.89856963808;PAX8:1.62016126467;VSX1,2:1.43753377083;NKX2-1,4:1.22846100682;SPZ1:1.18059145387;PDX1:1.14822026271;TFAP4:1.14485598029;TFAP2{A,C}:1.13090384768;HOX{A4,D4}:1.06979267821;TLX1..3_NFIC{dimer}:1.00028470519;LEF1_TCF7_TCF7L1,2:0.983029651897;NFIX:0.948128957041;PAX1,9:0.875659511033;POU1F1:0.862905818614;ZNF384:0.848743210514;POU6F1:0.846853910981;SRF:0.832346461061;TEAD1:0.832306250879;CDC5L:0.820687826483;HOX{A5,B5}:0.782424058761;GATA4:0.772139480589;NKX3-1:0.765455634911;NR6A1:0.734802481342;ADNP_IRX_SIX_ZHX:0.732125282456;GZF1:0.72897881842;MYBL2:0.71952066963;XBP1:0.716073929717;E2F1..5:0.710803682466;GFI1B:0.704375221257;POU5F1:0.691620771953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.665219279213;HBP1_HMGB_SSRP1_UBTF:0.665056195728;TAL1_TCF{3,4,12}:0.658482192558;TFAP2B:0.623486279832;SOX17:0.620357185262;MZF1:0.59783807752;GFI1:0.58068627353;NR3C1:0.568003173838;FOXD3:0.560859237115;NKX6-1,2:0.549688802309;ZNF238:0.546832414535;NHLH1,2:0.546593169474;SOX{8,9,10}:0.495664512017;HOX{A6,A7,B6,B7}:0.482501432966;NKX2-3_NKX2-5:0.47123078206;RORA:0.46799258413;EGR1..3:0.46711387626;PAX4:0.462697580489;MTF1:0.457671437072;HIC1:0.450104679371;GTF2A1,2:0.437685443588;NFATC1..3:0.435298079314;POU3F1..4:0.427135015925;KLF4:0.424698064309;PRDM1:0.422927697481;LHX3,4:0.416455829932;AR:0.397898443029;SOX2:0.397594078796;NR5A1,2:0.376827138042;ZFP161:0.362087832062;PRRX1,2:0.361477353832;GCM1,2:0.349643398442;TBX4,5:0.342015462503;NFE2L2:0.3393949418;FOSL2:0.333070841417;GTF2I:0.328853581988;TFCP2:0.32800740858;AHR_ARNT_ARNT2:0.299346400358;FOS_FOS{B,L1}_JUN{B,D}:0.281339144432;MTE{core}:0.269890565055;ALX1:0.262769144462;MEF2{A,B,C,D}:0.259843546333;EN1,2:0.235520050447;EVI1:0.206112556071;HSF1,2:0.195215021301;RFX1:0.17602663817;JUN:0.172240188357;GLI1..3:0.158131296853;HOXA9_MEIS1:0.148273032364;DMAP1_NCOR{1,2}_SMARC:0.145240452296;NFIL3:0.144018051762;CDX1,2,4:0.139037031145;BACH2:0.138969408122;BREu{core}:0.130702007369;CUX2:0.130642108112;MED-1{core}:0.130297223201;PBX1:0.120190774644;HNF1A:0.117558380323;CREB1:0.116090436069;RUNX1..3:0.113843248645;NRF1:0.065002395393;MYFfamily:0.0518722862867;MAZ:0.0510232344968;PPARG:0.0316367669214;TBP:0.0270316961337;HES1:0.0167671469549;FOXA2:0.00370975662904;NFE2:0.000531981769745;ATF6:-0.00959715843629;ZBTB6:-0.0111879628477;STAT2,4,6:-0.0148607252273;ZNF148:-0.01628383406;REST:-0.023311300532;RXR{A,B,G}:-0.024701761489;HNF4A_NR2F1,2:-0.0253162679424;PATZ1:-0.0336231249589;ZNF143:-0.0374688883707;PAX3,7:-0.0550549728123;MYB:-0.059037618476;ZIC1..3:-0.066719414247;NANOG{mouse}:-0.0715307512227;NFE2L1:-0.0749399921209;RREB1:-0.078156650156;SMAD1..7,9:-0.0881781375427;PAX6:-0.103891217885;T:-0.104911737981;HLF:-0.105517317374;RFX2..5_RFXANK_RFXAP:-0.110460905229;PITX1..3:-0.114686070958;POU2F1..3:-0.1171092422;TGIF1:-0.129774230842;ONECUT1,2:-0.130720996106;FOXQ1:-0.133783999198;EBF1:-0.141004823111;GATA6:-0.142239157628;NFY{A,B,C}:-0.152213642602;ALX4:-0.15272455523;HAND1,2:-0.179424009605;STAT5{A,B}:-0.187073435079;RXRA_VDR{dimer}:-0.217261256712;TP53:-0.231773890931;SREBF1,2:-0.235577140498;ZBTB16:-0.237448427982;DBP:-0.249183474998;NR1H4:-0.249247022401;CEBPA,B_DDIT3:-0.257016707543;MAFB:-0.288689058761;CRX:-0.307177980075;XCPE1{core}:-0.327550089022;ZNF423:-0.346743001445;NFKB1_REL_RELA:-0.360679054645;FOXO1,3,4:-0.383384675623;HMGA1,2:-0.390455252776;ESRRA:-0.395060654534;OCT4_SOX2{dimer}:-0.396381445804;IKZF1:-0.421172704069;IKZF2:-0.429629454119;SPIB:-0.437721526994;NANOG:-0.446394329188;IRF1,2:-0.451106865018;IRF7:-0.456418872036;ESR1:-0.46954647759;ETS1,2:-0.491011315717;SOX5:-0.491558719608;FOX{F1,F2,J1}:-0.522369406268;PAX5:-0.522857863683;SPI1:-0.525478333858;NKX3-2:-0.548355791856;UFEwm:-0.550278224169;LMO2:-0.578799488183;PAX2:-0.61254460971;ATF5_CREB3:-0.619661934575;HMX1:-0.63255983154;bHLH_family:-0.637078557737;FOXL1:-0.648098744478;FOXP3:-0.654397225454;SP1:-0.655061070144;ATF2:-0.664965541517;ELK1,4_GABP{A,B1}:-0.66789876379;AIRE:-0.67910407151;ELF1,2,4:-0.7007750003;FOX{I1,J2}:-0.738753633407;FOX{D1,D2}:-0.740712898543;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.747096089992;TLX2:-0.747542389551;ZEB1:-0.765725959467;ATF4:-0.768632370075;FOXN1:-0.771298445866;MYOD1:-0.827986121122;YY1:-0.833305591566;SNAI1..3:-0.868867124884;HIF1A:-0.887300714656;FOXP1:-0.909876929442;FOXM1:-0.962700056335;STAT1,3:-0.969337924819;BPTF:-0.970227966435;ARID5B:-0.970966808869;NKX2-2,8:-0.981137292406;TEF:-1.02228248004;TOPORS:-1.04138959857;RBPJ:-1.07822938386;EP300:-1.15783808773
}}
}}

Revision as of 15:31, 21 March 2012


Name:Myoblast differentiation to myotubes, day00, control donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stageNA
sexfemale
age3 years old
cell typemyoblast
cell lineNA
companyNA
collaborationBeatrice Bodega/Valerio Orlando
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.353
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0453
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.00137
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.134
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0908
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.365
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.826
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.385
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.332
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13847

Jaspar motifP-value
MA0002.20.251
MA0003.10.406
MA0004.10.573
MA0006.10.218
MA0007.10.404
MA0009.10.12
MA0014.10.229
MA0017.10.158
MA0018.20.114
MA0019.10.906
MA0024.10.0331
MA0025.10.409
MA0027.10.942
MA0028.11.10719e-5
MA0029.10.214
MA0030.10.143
MA0031.10.0604
MA0035.20.0935
MA0038.10.436
MA0039.20.0336
MA0040.10.432
MA0041.10.24
MA0042.10.279
MA0043.18.10999e-4
MA0046.10.387
MA0047.20.384
MA0048.10.423
MA0050.10.00135
MA0051.10.0943
MA0052.10.489
MA0055.10.0608
MA0057.10.903
MA0058.10.651
MA0059.10.921
MA0060.10.402
MA0061.10.00993
MA0062.24.41049e-12
MA0065.20.0107
MA0066.10.4
MA0067.10.097
MA0068.10.0664
MA0069.10.767
MA0070.10.668
MA0071.10.694
MA0072.10.322
MA0073.10.748
MA0074.10.503
MA0076.12.16801e-7
MA0077.10.624
MA0078.10.56
MA0079.20.497
MA0080.26.69715e-6
MA0081.10.00767
MA0083.18.40915e-4
MA0084.10.253
MA0087.10.989
MA0088.10.724
MA0090.12.51662e-4
MA0091.10.15
MA0092.10.611
MA0093.10.64
MA0099.21.82844e-6
MA0100.10.347
MA0101.10.078
MA0102.20.149
MA0103.12.26851e-5
MA0104.20.0899
MA0105.10.0594
MA0106.10.723
MA0107.10.0334
MA0108.20.0482
MA0111.10.711
MA0112.20.138
MA0113.10.903
MA0114.10.0989
MA0115.10.0775
MA0116.10.00594
MA0117.10.834
MA0119.10.345
MA0122.10.689
MA0124.10.348
MA0125.10.719
MA0131.10.0591
MA0135.10.145
MA0136.16.43485e-7
MA0137.20.15
MA0138.20.874
MA0139.10.195
MA0140.10.837
MA0141.10.343
MA0142.10.26
MA0143.10.284
MA0144.10.0774
MA0145.10.8
MA0146.10.0279
MA0147.10.091
MA0148.10.616
MA0149.10.86
MA0150.10.851
MA0152.15.93902e-4
MA0153.10.911
MA0154.10.0207
MA0155.10.259
MA0156.12.78593e-6
MA0157.10.196
MA0159.10.0121
MA0160.10.626
MA0162.10.755
MA0163.10.00446
MA0164.10.237
MA0258.10.0219
MA0259.10.554



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13847

Novel motifP-value
10.741
100.149
1000.0269
1010.892
1020.358
1030.102
1040.329
1050.881
1060.376
1070.113
1080.955
1090.252
110.741
1100.805
1110.835
1120.0881
1130.388
1140.752
1150.102
1160.547
1170.0842
1180.0107
1190.865
120.46
1200.396
1211
1220.477
1230.451
1240.286
1250.554
1260.934
1270.864
1280.666
1290.534
130.0604
1309.96202e-4
1310.993
1320.0717
1330.743
1340.546
1350.388
1360.112
1370.974
1380.929
1390.0436
140.931
1400.292
1410.284
1420.309
1430.233
1440.966
1450.421
1460.0881
1470.0321
1480.661
1490.927
150.521
1500.747
1510.655
1520.603
1530.998
1540.847
1550.0792
1560.468
1570.193
1580.806
1590.804
160.841
1600.433
1610.0473
1620.0733
1630.658
1640.0045
1650.916
1660.512
1670.825
1680.151
1690.395
170.294
180.885
190.892
20.311
200.091
210.373
220.971
230.202
240.459
250.843
260.772
270.933
280.601
290.0254
30.131
300.214
310.544
320.994
330.227
340.679
350.578
360.134
370.0297
380.908
390.439
40.882
400.0264
410.399
420.723
430.966
440.0869
450.733
460.629
470.171
480.119
490.786
50.509
500.661
510.582
520.982
530.449
540.279
550.0687
560.524
570.41
580.534
590.334
60.115
600.518
610.525
620.629
630.843
640.353
650.659
660.09
670.538
680.782
690.279
70.915
700.392
710.162
720.576
730.394
740.421
750.00537
760.328
770.575
780.0911
790.619
80.972
800.0605
810.861
820.205
830.554
840.541
850.426
860.942
870.764
880.793
890.965
90.0834
900.0251
910.921
920.695
930.446
940.462
950.268
960.387
970.206
980.128
990.49



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13847


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:13469-144I4&oldid=728729"