FF:10508-107D4: Difference between revisions

Revision as of 19:12, 9 July 2012

Name:	neuroblastoma cell line:CHP-134
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	adrenal gland
dev stage	NA
sex	unknown
age	NA
cell type	neuroblast
cell line	CHP-134
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0523
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0839
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.462
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.0523
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0.141
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0327
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0862
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.187
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.286
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.306
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0523
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00309
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0523
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.36
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.215
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0989
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.0523
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0.925
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11276

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.14918e-6
MA0003.1	MA0003.1	0.198
MA0004.1	MA0004.1	0.395
MA0006.1	MA0006.1	0.0999
MA0007.1	MA0007.1	0.12
MA0009.1	MA0009.1	0.21
MA0014.1	MA0014.1	0.665
MA0017.1	MA0017.1	8.30285e-4
MA0018.2	MA0018.2	0.00817
MA0019.1	MA0019.1	0.184
MA0024.1	MA0024.1	2.26926e-4
MA0025.1	MA0025.1	0.466
MA0027.1	MA0027.1	0.981
MA0028.1	MA0028.1	0.0467
MA0029.1	MA0029.1	0.708
MA0030.1	MA0030.1	0.971
MA0031.1	MA0031.1	0.433
MA0035.2	MA0035.2	0.899
MA0038.1	MA0038.1	1.95869e-4
MA0039.2	MA0039.2	0.0737
MA0040.1	MA0040.1	0.342
MA0041.1	MA0041.1	0.334
MA0042.1	MA0042.1	0.714
MA0043.1	MA0043.1	0.0286
MA0046.1	MA0046.1	0.378
MA0047.2	MA0047.2	0.0195
MA0048.1	MA0048.1	0.933
MA0050.1	MA0050.1	1.24946e-10
MA0051.1	MA0051.1	2.20328e-4
MA0052.1	MA0052.1	0.31
MA0055.1	MA0055.1	0.868
MA0057.1	MA0057.1	0.0765
MA0058.1	MA0058.1	0.365
MA0059.1	MA0059.1	0.3
MA0060.1	MA0060.1	2.54428e-12
MA0061.1	MA0061.1	0.00831
MA0062.2	MA0062.2	0.027
MA0065.2	MA0065.2	0.00423
MA0066.1	MA0066.1	0.0529
MA0067.1	MA0067.1	0.898
MA0068.1	MA0068.1	0.0536
MA0069.1	MA0069.1	0.92
MA0070.1	MA0070.1	0.134
MA0071.1	MA0071.1	0.468
MA0072.1	MA0072.1	0.962
MA0073.1	MA0073.1	0.545
MA0074.1	MA0074.1	0.152
MA0076.1	MA0076.1	7.86667e-4
MA0077.1	MA0077.1	0.183
MA0078.1	MA0078.1	0.57
MA0079.2	MA0079.2	0.521
MA0080.2	MA0080.2	3.43318e-11
MA0081.1	MA0081.1	0.134
MA0083.1	MA0083.1	0.0015
MA0084.1	MA0084.1	0.23
MA0087.1	MA0087.1	0.251
MA0088.1	MA0088.1	0.516
MA0090.1	MA0090.1	0.0131
MA0091.1	MA0091.1	0.133
MA0092.1	MA0092.1	0.268
MA0093.1	MA0093.1	0.295
MA0099.2	MA0099.2	1.38576e-15
MA0100.1	MA0100.1	0.261
MA0101.1	MA0101.1	0.0189
MA0102.2	MA0102.2	0.341
MA0103.1	MA0103.1	0.174
MA0104.2	MA0104.2	0.0938
MA0105.1	MA0105.1	0.032
MA0106.1	MA0106.1	0.315
MA0107.1	MA0107.1	0.00521
MA0108.2	MA0108.2	0.00205
MA0111.1	MA0111.1	0.906
MA0112.2	MA0112.2	1.95401e-4
MA0113.1	MA0113.1	0.0505
MA0114.1	MA0114.1	0.0158
MA0115.1	MA0115.1	0.831
MA0116.1	MA0116.1	0.017
MA0117.1	MA0117.1	0.72
MA0119.1	MA0119.1	0.0983
MA0122.1	MA0122.1	0.304
MA0124.1	MA0124.1	0.695
MA0125.1	MA0125.1	0.242
MA0131.1	MA0131.1	0.341
MA0135.1	MA0135.1	0.541
MA0136.1	MA0136.1	1.37956e-7
MA0137.2	MA0137.2	0.207
MA0138.2	MA0138.2	0.912
MA0139.1	MA0139.1	0.406
MA0140.1	MA0140.1	0.784
MA0141.1	MA0141.1	0.0432
MA0142.1	MA0142.1	0.59
MA0143.1	MA0143.1	0.475
MA0144.1	MA0144.1	0.00818
MA0145.1	MA0145.1	0.0803
MA0146.1	MA0146.1	0.0584
MA0147.1	MA0147.1	0.105
MA0148.1	MA0148.1	0.0348
MA0149.1	MA0149.1	0.0689
MA0150.1	MA0150.1	4.23781e-4
MA0152.1	MA0152.1	0.778
MA0153.1	MA0153.1	0.216
MA0154.1	MA0154.1	0.0315
MA0155.1	MA0155.1	0.366
MA0156.1	MA0156.1	0.00673
MA0157.1	MA0157.1	0.109
MA0159.1	MA0159.1	0.00816
MA0160.1	MA0160.1	0.151
MA0162.1	MA0162.1	0.201
MA0163.1	MA0163.1	0.00929
MA0164.1	MA0164.1	0.944
MA0258.1	MA0258.1	0.00851
MA0259.1	MA0259.1	0.159

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11276

Novel motif	Logo	P-value
1	1	0.302
10	10	0.216
100	100	0.929
101	101	0.991
102	102	0.599
103	103	0.0844
104	104	0.39
105	105	0.661
106	106	0.00314
107	107	0.00565
108	108	0.66
109	109	0.0191
11	11	0.12
110	110	0.301
111	111	0.723
112	112	0.0655
113	113	0.78
114	114	0.0327
115	115	0.222
116	116	0.342
117	117	0.241
118	118	0.39
119	119	0.318
12	12	0.468
120	120	0.0551
121	121	0.906
122	122	0.604
123	123	0.0548
124	124	0.24
125	125	0.974
126	126	0.117
127	127	0.352
128	128	0.0336
129	129	0.261
13	13	0.0898
130	130	0.833
131	131	0.399
132	132	0.727
133	133	0.897
134	134	0.619
135	135	0.275
136	136	0.227
137	137	0.289
138	138	0.771
139	139	0.391
14	14	0.605
140	140	0.245
141	141	0.467
142	142	0.841
143	143	0.165
144	144	0.561
145	145	0.121
146	146	0.733
147	147	0.331
148	148	0.0339
149	149	0.0695
15	15	0.211
150	150	0.233
151	151	0.429
152	152	0.0554
153	153	0.777
154	154	0.952
155	155	0.736
156	156	0.818
157	157	0.236
158	158	0.419
159	159	0.0934
16	16	0.0996
160	160	0.12
161	161	0.71
162	162	0.741
163	163	0.16
164	164	0.0731
165	165	0.289
166	166	0.43
167	167	0.741
168	168	0.0281
169	169	0.0147
17	17	0.141
18	18	0.552
19	19	0.0798
2	2	0.246
20	20	0.962
21	21	0.533
22	22	0.0888
23	23	0.00223
24	24	0.162
25	25	0.662
26	26	0.06
27	27	0.265
28	28	0.902
29	29	0.148
3	3	0.141
30	30	0.311
31	31	0.485
32	32	0.00605
33	33	0.198
34	34	0.551
35	35	0.944
36	36	0.653
37	37	0.126
38	38	0.231
39	39	0.071
4	4	0.364
40	40	0.234
41	41	0.292
42	42	0.73
43	43	0.142
44	44	0.0662
45	45	0.376
46	46	0.209
47	47	0.525
48	48	0.313
49	49	0.405
5	5	0.161
50	50	0.45
51	51	0.456
52	52	0.0976
53	53	0.839
54	54	0.31
55	55	0.127
56	56	0.484
57	57	0.834
58	58	0.212
59	59	0.0309
6	6	0.927
60	60	0.0105
61	61	0.336
62	62	0.0945
63	63	0.153
64	64	0.836
65	65	0.13
66	66	0.171
67	67	0.63
68	68	0.75
69	69	0.567
7	7	0.226
70	70	0.0153
71	71	0.0734
72	72	0.124
73	73	0.0288
74	74	0.709
75	75	0.312
76	76	0.963
77	77	0.0391
78	78	0.125
79	79	0.0889
8	8	0.153
80	80	0.142
81	81	0.385
82	82	0.0989
83	83	0.155
84	84	0.435
85	85	0.0341
86	86	0.567
87	87	0.185
88	88	0.705
89	89	0.0258
9	9	0.183
90	90	0.701
91	91	0.34
92	92	0.082
93	93	0.873
94	94	0.29
95	95	0.0952
96	96	0.418
97	97	0.737
98	98	0.339
99	99	0.241

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11276

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102989 CHP-134 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000333 (migratory neural crest cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000219 (motile cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
169 (neuroendocrine tumor)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000013 (sympathetic nervous system)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100932 (neuroblastoma cell line sample)
0102989 (CHP-134 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr2:16080659..16080685,+!p1@MYCN!2.88!761.99!MYCN;;chr2:182545234..182545252,-!p1@NEUROD1!2.83!670.04!NEUROD1;;chr4:174451370..174451387,-!p1@HAND2!2.41!256.56!HAND2;;chr11:71955210..71955227,-!p1@PHOX2A!2.41!253.74!PHOX2A;;chr1:160336851..160336868,+!p1@NHLH1!2.38!238.78!NHLH1;;chr4:81118647..81118666,+!p1@PRDM8!2.34!285.33!PRDM8;;chr4:41750731..41750748,-!p1@PHOX2B!2.29!195.42!PHOX2B;;chr7:19157248..19157268,-!p1@TWIST1!2.16!377.03!TWIST1;;chr2:16081912..16081931,+!p2@MYCN!2.10!126.23!MYCN;;chr2:74741569..74741620,+!p1@TLX2!2.09!121.24!TLX2;;chr13:72441315..72441454,-!p1@DACH1!2.02!199.77!DACH1;;chr4:174450089..174450153,-!p2@HAND2!2.01!100.78!HAND2;;chr12:103351444..103351461,+!p1@ASCL1!1.97!93.23!ASCL1;;chrX:136648279..136648295,+!p1@ZIC3!1.92!82.49!ZIC3;;chr20:20348740..20348757,+!p1@INSM1!1.92!81.98!INSM1;;chr5:153857778..153857794,-!p1@HAND1!1.91!80.57!HAND1;;chr1:116383738..116383752,-!p1@NHLH2!1.91!79.55!NHLH2;;chr2:16080823..16080836,+!p5@MYCN!1.89!75.84!MYCN;;chr10:8096631..8096660,+!p1@GATA3!1.87!87.10!GATA3;;chr2:16082155..16082169,+!p3@MYCN!1.85!70.09!MYCN;;chr4:174451350..174451363,-!p3@HAND2!1.83!66.38!HAND2;;chr5:50679228..50679288,+!p1@ISL1!1.82!64.84!ISL1;;chr2:16082395..16082415,+!p6@MYCN!1.79!60.88!MYCN;;chr4:41750057..41750078,-!p3@PHOX2B!1.78!59.47!PHOX2B;;chr15:57511609..57511651,+!p2@TCF12!1.76!92.60!TCF12;;chr17:48072574..48072597,-!p1@DLX3!1.76!56.79!DLX3;;chr17:37764128..37764258,-!p1@NEUROD2!1.76!56.66!NEUROD2;;chr13:37494365..37494381,-!p1@SMAD9!1.71!86.20!SMAD9;;chr10:8096772..8096787,+!p2@GATA3!1.69!56.53!GATA3;;chr2:5832508..5832524,+!p1@SOX11!1.67!46.17!SOX11;;chr7:63505799..63505904,+!p1@ZNF727!1.67!45.53!ZNF727;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.67!45.53!PEG3;;chr13:72441074..72441172,-!p2@DACH1!1.67!45.40!DACH1;;chr2:16080635..16080650,+!p4@MYCN!1.63!41.31!MYCN;;chr16:67197654..67197716,+!p3@HSF4!1.61!39.65!HSF4;;chr1:151032922..151032951,+!p2@MLLT11!1.60!62.54!MLLT11;;chr6:15401104..15401166,+!p5@JARID2!1.59!37.73!JARID2;;chr10:8095593..8095625,+!p3@GATA3!1.58!42.97!GATA3;;chr1:216896752..216896778,-!p1@ESRRG!1.56!34.92!ESRRG;;chr2:74741642..74741658,+!p2@TLX2!1.55!34.53!TLX2;;chr11:63684602..63684664,-!p1@RCOR2!1.52!62.41!RCOR2;;chr2:16082094..16082106,+!p7@MYCN!1.47!28.39!MYCN;;chr4:41750839..41750850,-!p2@PHOX2B!1.46!28.14!PHOX2B;;chr2:16082418..16082429,+!p8@MYCN!1.46!27.75!MYCN;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.57!TFAP2A;;chr19:9609272..9609297,-!p1@ZNF560!1.42!25.58!ZNF560;;chrX:136648643..136648711,+!p2@ZIC3!1.42!25.20!ZIC3;;chr1:244214577..244214593,+!p1@ZNF238!1.41!24.56!ZNF238;;chr18:55102598..55102623,+!p1@ONECUT2!1.39!23.28!ONECUT2;;chr5:158526917..158526932,-!p1@EBF1!1.37!54.74!EBF1;;chrX:136648297..136648319,+!p3@ZIC3!1.35!21.61!ZIC3;;chr4:41750922..41750939,-!p4@PHOX2B!1.35!21.36!PHOX2B;;chr3:18486354..18486377,-!p2@SATB1!1.34!25.71!SATB1;;chr20:62795799..62795819,+!p1@MYT1!1.34!20.97!MYT1;;chr4:299227..299272,-!p1@ZNF732!1.33!20.46!ZNF732;;chr4:113437332..113437337,-!p1@NEUROG2!1.32!19.95!NEUROG2;;chr2:2334997..2335053,-!p1@MYT1L!1.32!19.82!MYT1L;;chr18:52989031..52989079,-!p2@TCF4!1.31!44.76!TCF4;;chr20:45142154..45142227,-!p1@ZNF334!1.31!38.37!ZNF334;;chr19:50432453..50432468,+!p1@ATF5!1.30!1031.34!ATF5;;chr2:239148671..239148686,-!p1@HES6!1.30!68.30!HES6;;chr2:166326200..166326216,+!p1@CSRNP3!1.28!26.60!CSRNP3;;chr12:55413751..55413765,+!p1@NEUROD4!1.28!18.03!NEUROD4;;chr19:38042240..38042309,+!p2@ZNF540!1.27!26.86!ZNF540;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.26!159.23!ZNF595;;chr4:81105027..81105039,+!p3@PRDM8!1.26!19.70!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!1.26!19.44!TFAP2A;;chr8:40755333..40755352,-!p1@ZMAT4!1.25!16.75!ZMAT4;;chr1:116383716..116383723,-!p5@NHLH2!1.25!16.63!NHLH2;;chr5:150284532..150284549,-!p1@ZNF300!1.24!33.51!ZNF300;;chr2:5832493..5832507,+!p2@SOX11!1.23!16.11!SOX11;;chr1:151032860..151032918,+!p1@MLLT11!1.22!183.40!MLLT11;;chr2:60780607..60780624,-!p2@BCL11A!1.22!47.58!BCL11A;;chr2:25475120..25475176,-!p2@DNMT3A!1.22!20.85!DNMT3A;;chr19:58545454..58545498,+!p1@ZSCAN1!1.21!15.22!ZSCAN1;;chr4:206390..206444,+!p1@ZNF876P!1.20!26.09!ZNF876P;;chr19:19976683..19976709,+!p1@ZNF253!1.18!62.28!ZNF253;;chr3:44626446..44626477,+!p1@ZNF660!1.18!25.32!ZNF660;;chr13:37494391..37494406,-!p5@SMAD9!1.18!14.20!SMAD9;;chr1:151032957..151032968,+!p7@MLLT11!1.18!14.07!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.17!15.48!RORB;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.81!HOXD8;;chr8:93107451..93107468,-!p2@RUNX1T1!1.17!13.68!RUNX1T1;;chr7:19185475..19185487,-!p1@FERD3L!1.16!13.43!FERD3L;;chr4:41750047..41750056,-!p7@PHOX2B!1.16!13.43!PHOX2B;;chr3:52001448..52001478,-!p2@PCBP4!1.15!180.46!PCBP4;;chrX:84499081..84499115,+!p2@ZNF711!1.15!19.18!ZNF711;;chr22:19748231..19748317,+!p1@TBX1!1.15!13.17!TBX1;;chr7:31380292..31380351,-!p1@NEUROD6!1.14!12.92!NEUROD6;;chr18:55102628..55102646,+!p2@ONECUT2!1.14!12.66!ONECUT2;;chr17:41277372..41277418,-!p1@BRCA1!1.13!45.53!BRCA1;;chr6:15401075..15401095,+!p11@JARID2!1.13!12.41!JARID2;;chr8:93074848..93074871,-!p3@RUNX1T1!1.13!12.41!RUNX1T1;;chr4:81105065..81105089,+!p8@PRDM8!1.12!12.15!PRDM8;;chr1:216896780..216896800,-!p2@ESRRG!1.12!12.15!ESRRG;;chr10:50604121..50604142,-!p1@DRGX!1.12!12.15!DRGX;;chr12:54447599..54447630,+!p3@HOXC4!1.10!14.20!HOXC4;;chr2:219849805..219849819,-!p3@FEV!1.09!11.38!FEV;;chr19:31840130..31840160,-!p2@TSHZ3!1.08!17.14!TSHZ3;;chr3:40547564..40547616,+!p1@ZNF620!1.08!15.48!ZNF620;;chrY:21906594..21906622,-!p1@KDM5D!1.08!11.00!KDM5D;;chr2:66662281..66662308,+!p1@MEIS1!1.07!37.22!MEIS1;;chr19:22817119..22817145,+!p1@ZNF492!1.07!18.03!ZNF492;;chrX:84498989..84499003,+!p1@ZNF711!1.07!14.84!ZNF711;;chr2:16082384..16082391,+!p9@MYCN!1.07!10.87!MYCN;;chr10:131762504..131762555,-!p1@EBF3!1.07!10.62!EBF3;;chr2:66662510..66662521,+!p6@MEIS1!1.06!10.49!MEIS1;;chr5:158524625..158524669,-!p6@EBF1!1.06!10.49!EBF1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.06!10.36!RUNX1T1;;chr2:60780753..60780800,-!p1@BCL11A!1.05!50.39!BCL11A;;chr17:53342311..53342400,+!p1@HLF!1.05!11.64!HLF;;chr1:116383701..116383706,-!p9@NHLH2!1.05!10.23!NHLH2;;chr3:44596679..44596726,+!p1@ZNF167!1.03!43.48!ZNF167;;chr2:71127699..71127744,+!p1@VAX2!1.03!20.21!VAX2;;chr11:8102749..8102769,+!p2@TUB!1.03!18.93!TUB;;chr2:182545282..182545294,-!p2@NEUROD1!1.03!9.72!NEUROD1;;chr1:247171347..247171366,-!p2@ZNF695!1.02!17.52!ZNF695;;chr19:33865009..33865090,+!p3@CEBPG!1.02!12.79!CEBPG;;chr2:182545296..182545307,-!p3@NEUROD1!1.02!9.59!NEUROD1;;chr2:2335109..2335134,-!p2@MYT1L!1.02!9.59!MYT1L;;chr20:42295713..42295738,+!p2@MYBL2!1.01!55.25!MYBL2;;chr3:18466787..18466839,-!p1@SATB1!1.01!42.08!SATB1;;chr7:6655225..6655279,+!p1@ENST00000457543!1.01!14.07!ZNF853;;chr11:8102846..8102892,+!p1@TUB!1.01!13.05!TUB;;chr12:24102576..24102623,-!p2@SOX5!1.01!9.34!SOX5;;chr18:56532100..56532130,+!p1@ZNF532!1.00!17.01!ZNF532;;chr2:182543783..182543813,-!p6@NEUROD1!1.00!8.95!NEUROD1;;chr2:60778035..60778060,-!p4@BCL11A!0.99!10.49!BCL11A;;chr8:30890810..30890880,-!p1@PURG!0.99!8.82!PURG;;chr1:216896801..216896812,-!p5@ESRRG!0.99!8.82!ESRRG;;chr17:59477233..59477263,+!p1@TBX2!0.98!27.11!TBX2;;chr18:42260920..42260951,+!p4@SETBP1!0.98!8.44!SETBP1;;chr20:45087928..45087965,-!p1@ENST00000400371,p1@uc002xry.2!0.97!8.31!ZNF663;;chr2:74740569..74740580,+!p4@TLX2!0.97!8.31!TLX2;;chr6:21597765..21597779,+!p2@SOX4!0.96!67.53!SOX4;;chr18:42260840..42260860,+!p2@SETBP1!0.96!8.19!SETBP1;;chrX:106959661..106959763,-!p4@TSC22D3!0.95!23.92!TSC22D3;;chr20:32274179..32274213,-!p1@E2F1!0.94!52.56!E2F1;;chr12:54447637..54447659,+!p4@HOXC4!0.94!7.67!HOXC4;;chr14:58797974..58798011,+!p3@ARID4A!0.94!7.67!ARID4A;;chr15:57511589..57511608,+!p4@TCF12!0.94!7.67!TCF12;;chr4:81105091..81105107,+!p9@PRDM8!0.94!7.67!PRDM8;;chr12:50479109..50479146,+!p2@SMARCD1!0.93!132.50!SMARCD1;;chr19:23941680..23941704,-!p1@ZNF681!0.93!22.64!ZNF681;;chr20:50721803..50721857,-!p2@ZFP64!0.93!12.02!ZFP64;;chr3:141105705..141105770,+!p4@ZBTB38!0.93!9.21!ZBTB38;;chr2:95963052..95963106,+!p1@KCNIP3!0.93!7.55!KCNIP3;;chr12:103352277..103352324,+!p2@ASCL1!0.93!7.55!ASCL1;;chr19:22966925..22966958,-!p1@ZNF99!0.93!7.42!ZNF99;;chr2:45168997..45169020,+!p4@SIX3!0.93!7.42!SIX3;;chr3:52001426..52001447,-!p3@PCBP4!0.92!21.36!PCBP4;;chr7:19157043..19157088,-!p2@TWIST1!0.92!18.80!TWIST1;;chr6:21597600..21597664,+!p3@SOX4!0.92!12.41!SOX4;;chr12:55413694..55413703,+!p2@NEUROD4!0.92!7.29!NEUROD4;;chr18:56531584..56531646,+!p4@ZNF532!0.91!9.46!ZNF532;;chr17:48046543..48046575,+!p2@DLX4!0.91!7.16!DLX4;;chr2:66662249..66662267,+!p2@MEIS1!0.90!28.01!MEIS1;;chr14:73360799..73360817,-!p1@DPF3!0.90!25.32!DPF3;;chr19:23941647..23941672,-!p2@ZNF681!0.90!11.77!ZNF681;;chr2:45236540..45236577,-!p1@SIX2!0.90!6.91!SIX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.89!12.41!ZNF804A;;chr15:80696703..80696754,+!p1@ARNT2!0.89!9.08!ARNT2;;chr19:37407411..37407451,+!p3@ZNF568!0.89!8.95!ZNF568;;chr17:38465441..38465481,+!p6@RARA!0.89!8.44!RARA;;chr11:8102819..8102845,+!p3@TUB!0.89!8.44!TUB;;chr4:8873545..8873583,-!p1@HMX1!0.89!6.78!HMX1;;chr5:153857800..153857812,-!p2@HAND1!0.89!6.78!HAND1;;chr7:19185493..19185503,-!p2@FERD3L!0.89!6.78!FERD3L;;chr2:66662396..66662407,+!p4@MEIS1!0.89!6.78!MEIS1;;chr4:41750793..41750804,-!p5@PHOX2B!0.89!6.78!PHOX2B;;chr1:43148625..43148710,+!p3@YBX1!0.88!12.28!YBX1;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.52!ZNF177;;chr2:2335070..2335098,-!p4@MYT1L!0.88!6.52!MYT1L;;chr9:109625401..109625458,+!p1@ZNF462!0.87!17.65!ZNF462;;chr1:247171316..247171336,-!p3@ZNF695!0.87!9.72!ZNF695;;chr1:214161272..214161322,+!p1@PROX1!0.87!9.21!PROX1;;chr19:37998036..37998098,+!p2@ZNF793!0.87!8.06!ZNF793;;chrX:129402768..129402796,-!p2@ZNF280C!0.86!20.08!ZNF280C;;chr1:227751231..227751273,+!p1@ZNF678!0.85!40.80!ZNF678;;chr9:114287433..114287513,+!p1@ZNF483!0.85!16.63!ZNF483;;chr19:11750566..11750627,+!p1@ZNF833P!0.85!8.44!ZNF833P;;chr17:48045917..48045977,+!p1@DLX4!0.85!6.14!DLX4;;chr8:93115362..93115391,-!p9@RUNX1T1!0.85!6.01!RUNX1T1;;chr1:153940354..1539403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TA3!0.36!1.28!GATA3;;chr11:125034605..125034636,+!p2@PKNOX2!0.36!1.28!PKNOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.36!1.28!PKNOX2;;chr15:80696606..80696633,+!p8@ARNT2!0.36!1.28!ARNT2;;chr17:48046642..48046667,+!p3@DLX4!0.36!1.28!DLX4;;chr19:22966893..22966924,-!p2@ZNF99!0.36!1.28!ZNF99;;chr8:41909496..41909512,-!p1@KAT6A!0.35!60.75!KAT6A;;chr5:138629628..138629688,+!p2@MATR3!0.35!48.09!MATR3;;chr19:36706024..36706049,+!p1@ZNF146!0.35!35.68!ZNF146;;chr19:9785743..9785784,-!p1@ZNF562!0.35!29.67!ZNF562;;chr12:53574464..53574539,+!p1@ZNF740!0.35!19.57!ZNF740;;chr7:28220198..28220269,-!p2@JAZF1!0.35!17.78!JAZF1;;chr18:53255415..53255491,-!p1@TCF4!0.35!16.50!TCF4;;chr7:148959269..148959326,+!p1@ZNF783!0.35!16.11!ZNF783;;chr14:74226961..74227020,-!p1@C14orf43!0.35!12.92!C14orf43;;chr19:14800849..14800917,+!p1@ZNF333!0.35!12.53!ZNF333;;chr19:58459047..58459083,-!p1@ZNF256!0.35!9.21!ZNF256;;chr5:133450365..133450444,+!p1@TCF7!0.35!8.57!TCF7;;chr21:47063625..47063658,+!p1@PCBP3!0.35!8.31!PCBP3;;chr3:48282587..48282603,+!p1@ZNF589!0.35!8.31!ZNF589;;chr5:178157651..178157689,-!p1@ZNF354A!0.35!7.67!ZNF354A;;chr6:43337180..43337244,-!p1@ZNF318!0.35!7.16!ZNF318;;chr19:38210622..38210681,-!p1@ZNF607!0.35!7.03!ZNF607;;chr21:27107726..27107772,+!p4@GABPA!0.35!5.76!GABPA;;chr22:20748434..20748455,+!p1@ZNF74!0.35!5.63!ZNF74;;chr19:44809143..44809187,-!p1@ZNF235!0.35!5.37!ZNF235;;chr19:37958318..37958365,-!p2@ZNF569!0.35!4.73!ZNF569;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.35!4.09!ZKSCAN5;;chr6:56954830..56954845,+!p3@ZNF451!0.35!3.71!ZNF451;;chr20:48807171..48807234,+!p4@CEBPB!0.35!3.71!CEBPB;;chr5:180288225..180288243,-!p3@ZFP62!0.35!3.45!ZFP62;;chr7:64254834..64254854,+!p2@ZNF138!0.35!2.94!ZNF138;;chr1:91487629..91487640,-!p7@ZNF644!0.35!2.69!ZNF644;;chr20:50808252..50808264,-!p4@ZFP64!0.35!2.69!ZFP64;;chr6:27356745..27356777,+!p1@ZNF391!0.35!2.56!ZNF391;;chr16:30582888..30582923,-!p3@ZNF688!0.35!2.43!ZNF688;;chr3:44754176..44754196,+!p2@ZNF502!0.35!2.05!ZNF502;;chr17:4890672..4890692,-!p3@CAMTA2!0.35!1.92!CAMTA2;;chr1:27023752..27023799,+!p4@ARID1A!0.35!1.92!ARID1A;;chr6:15245797..15245818,+!p8@JARID2!0.35!1.66!JARID2;;chr8:28748157..28748175,+!p3@HMBOX1!0.35!1.66!HMBOX1;;chr10:64134120..64134183,+!p1@ZNF365!0.35!1.66!ZNF365;;chr2:176032843..176032941,-!p1@ATF2!0.34!82.24!ATF2;;chr5:135468516..135468621,+!p1@SMAD5!0.34!75.33!SMAD5;;chr13:115079949..115080022,+!p1@CHAMP1!0.34!54.87!CHAMP1;;chr5:176449684..176449722,+!p1@ZNF346!0.34!36.96!ZNF346;;chr1:91487553..91487612,-!p1@ZNF644!0.34!33.38!ZNF644;;chr19:11708259..11708309,+!p1@ZNF627!0.34!19.44!ZNF627;;chr6:35227480..35227546,+!p1@ZNF76!0.34!12.53!ZNF76;;chr15:43663214..43663261,-!p@chr15:43663214..43663261,-!0.34!10.87!ZSCAN29;;chr16:29818160..29818188,+!p6@MAZ!0.34!8.70!MAZ;;chr16:2059797..2059837,-!p1@ZNF598!0.34!7.42!ZNF598;;chr8:81398444..81398472,+!p1@ZBTB10!0.34!7.42!ZBTB10;;chr2:242576641..242576731,-!p2@THAP4!0.34!7.03!THAP4;;chr19:12146483..12146546,-!p1@ZNF433!0.34!6.52!ZNF433;;chr19:11071652..11071682,+!p3@SMARCA4!0.34!6.27!SMARCA4;;chr12:6798056..6798102,-!p3@ZNF384!0.34!5.12!ZNF384;;chr12:133707172..133707202,+!p2@ZNF10!0.34!3.84!ZNF10;;chr10:76585205..76585251,+!p3@KAT6B!0.34!3.58!KAT6B;;chr8:116681123..116681143,-!p4@TRPS1!0.34!3.07!TRPS1;;chr10:97889464..97889494,+!p3@ZNF518A!0.34!2.94!ZNF518A;;chr18:47814010..47814021,-!p3@CXXC1!0.34!2.56!CXXC1;;chr12:56583371..56583394,-!p2@SMARCC2!0.34!2.30!SMARCC2;;chr2:148779187..148779222,+!p5@MBD5!0.34!1.79!MBD5;;chr12:51611694..51611719,-!p2@POU6F1!0.34!1.66!POU6F1;;chr1:35658736..35658754,-!p1@SFPQ!0.33!705.08!SFPQ;;chr10:60145155..60145206,+!p1@TFAM!0.33!84.67!TFAM;;chr15:35280439..35280503,-!p1@ZNF770!0.33!66.89!ZNF770;;chr11:118307179..118307223,+!p1@MLL!0.33!59.60!MLL;;chr18:32924372..32924430,-!p1@ZNF24!0.33!58.96!ZNF24;;chr1:53018743..53018777,-!p1@ZCCHC11!0.33!32.74!ZCCHC11;;chr7:77428149..77428220,+!p1@PHTF2!0.33!18.93!PHTF2;;chr7:64023441..64023462,-!p1@ZNF680!0.33!14.84!ZNF680;;chr3:40566428..40566480,+!p1@ZNF621!0.33!14.84!ZNF621;;chr16:69419794..69419830,-!p3@TERF2!0.33!8.70!TERF2;;chr18:5296001..5296045,-!p1@ZFP161!0.33!6.78!ZFP161;;chr19:56915668..56915732,+!p1@ZNF583!0.33!6.39!ZNF583;;
+|ffid_belonging_in_development=CL:0000133,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=FF:0100932
 |fonse_cell_line_closure=FF:0100932

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FF:10508-107D4: Difference between revisions

From FANTOM5_SSTAR

Revision as of 19:12, 9 July 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0