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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008534
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002426,UBERON:0003831,UBERON:0003898,UBERON:0004830,UBERON:0002036,UBERON:0002385,UBERON:0005090,UBERON:0001630,UBERON:0005177,UBERON:0003830,UBERON:0005175,UBERON:0001774,UBERON:0005181,UBERON:0010317,UBERON:0001015,UBERON:0001103,UBERON:0001004,UBERON:0002204,UBERON:0001443,UBERON:0000383,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002426,UBERON:0003831,UBERON:0003898,UBERON:0004830,UBERON:0002036,UBERON:0002385,UBERON:0005090,UBERON:0001630,UBERON:0005177,UBERON:0003830,UBERON:0005175,UBERON:0001774,UBERON:0005181,UBERON:0010317,UBERON:0001015,UBERON:0001103,UBERON:0001004,UBERON:0002204,UBERON:0001443,UBERON:0000383,UBERON:0000915
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 40: Line 41:
|is_a=EFO:0002091;;FF:0010069
|is_a=EFO:0002091;;FF:0010069
|is_obsolete=
|is_obsolete=
|library_ids=CNhs11779
|name=diaphragm, fetal, donor1
|name=diaphragm, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 84: Line 86:
|top_motifs=MEF2{A,B,C,D}:6.20431999248;NR1H4:4.51449731561;FOXL1:3.73293352504;TAL1_TCF{3,4,12}:3.68545634184;IKZF2:3.57578959382;SOX5:3.40472679666;NR5A1,2:3.36043991811;ESR1:3.28954075946;NR6A1:3.27502461839;HOX{A4,D4}:3.0038738266;SMAD1..7,9:2.89565982482;SPZ1:2.83125764952;SRF:2.60227227693;ZNF384:2.58342389552;NFE2L1:2.53320788184;GCM1,2:2.49356183782;MYBL2:2.45474000104;GLI1..3:2.30996233198;MAFB:2.20421851982;NKX2-2,8:2.18365651657;TBP:2.15176692038;FOXP3:2.12671194158;AR:2.03332867695;PDX1:1.93397193215;TFAP2{A,C}:1.88548263071;TFAP4:1.86544450228;TLX2:1.85495390667;PAX5:1.83061187502;ALX1:1.72175896499;TOPORS:1.71619505732;GATA4:1.71291875308;ATF2:1.67506916237;TGIF1:1.61480945446;RORA:1.612022436;HIC1:1.60193468607;PATZ1:1.59883984216;ESRRA:1.57982678519;MAZ:1.55955335729;NANOG{mouse}:1.54397455041;FOXM1:1.52181672296;NKX3-1:1.51568675368;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.49903024276;UFEwm:1.48965890529;IKZF1:1.48295555108;NFATC1..3:1.46927876976;POU1F1:1.43303064483;RXR{A,B,G}:1.42914958675;HOX{A6,A7,B6,B7}:1.4250568207;HMGA1,2:1.41642815434;EVI1:1.40747776993;KLF4:1.40342566236;NHLH1,2:1.38167217708;FOXP1:1.35204661901;XBP1:1.30618499179;NFIX:1.28124385792;EGR1..3:1.18817908945;RREB1:1.17590295285;ZBTB16:1.17423168966;ZNF423:1.1658551324;MYOD1:1.16430090355;HES1:1.16248508762;MTE{core}:1.15802918104;NKX2-1,4:1.15749469192;GFI1B:1.10134732319;TFAP2B:1.10086959285;GTF2A1,2:1.08595055854;HSF1,2:1.05637604662;MED-1{core}:1.05290719867;MZF1:1.04283607204;POU3F1..4:1.04204330644;LHX3,4:1.02705586706;TLX1..3_NFIC{dimer}:1.0207301289;TEAD1:0.973131910637;YY1:0.967447832494;EP300:0.927942906838;ZIC1..3:0.907616723624;BPTF:0.907354785303;NKX6-1,2:0.877974856517;TFCP2:0.876821706571;FOXQ1:0.87335830542;TBX4,5:0.860212054943;HAND1,2:0.819688010447;MTF1:0.817665486516;GTF2I:0.815506072422;RBPJ:0.796801770853;PRDM1:0.749824793886;FOXO1,3,4:0.728837091473;RXRA_VDR{dimer}:0.703899725214;STAT5{A,B}:0.678494682844;PBX1:0.677316604147;SP1:0.648610456663;SOX{8,9,10}:0.640235376914;LMO2:0.622240295135;PAX6:0.607282711053;CDX1,2,4:0.580624076013;HOX{A5,B5}:0.569983706359;PAX3,7:0.565452145056;POU6F1:0.553686777636;MYFfamily:0.551347414392;ATF6:0.53440004617;ZFP161:0.517264362773;PAX1,9:0.469765492902;NR3C1:0.453729583755;ZNF148:0.444501103383;LEF1_TCF7_TCF7L1,2:0.439474074823;IRF7:0.424403829155;ZNF238:0.402127026901;ARID5B:0.39753697501;AIRE:0.392803689357;BREu{core}:0.389721454564;NKX2-3_NKX2-5:0.365852738835;NKX3-2:0.343408642408;HOXA9_MEIS1:0.334170171693;STAT2,4,6:0.31563026156;CUX2:0.27752746599;HMX1:0.273068000674;SOX17:0.235950636003;REST:0.2194778563;JUN:0.2104578428;CREB1:0.187422388472;GZF1:0.104216687388;FOXA2:0.0988130909681;FOX{F1,F2,J1}:-0.0119007800841;ALX4:-0.0422194978551;SOX2:-0.0510147820771;POU5F1:-0.063793675955;EN1,2:-0.0897422998529;GFI1:-0.129024513457;SNAI1..3:-0.140887629501;ETS1,2:-0.146350108879;FOX{D1,D2}:-0.147474536538;PITX1..3:-0.154374706267;PAX2:-0.160425435884;SPI1:-0.188352477462;ATF4:-0.190036374567;DMAP1_NCOR{1,2}_SMARC:-0.194082904248;GATA6:-0.214169388144;STAT1,3:-0.219895146193;TP53:-0.240946614476;ONECUT1,2:-0.248728628151;SREBF1,2:-0.248814562864;IRF1,2:-0.259654715474;T:-0.259750284534;XCPE1{core}:-0.264837328814;ZNF143:-0.2895633842;HNF4A_NR2F1,2:-0.296396348241;RFX2..5_RFXANK_RFXAP:-0.353372309214;ZBTB6:-0.364514735941;NANOG:-0.419226901886;FOX{I1,J2}:-0.432144483933;SPIB:-0.467286790361;HBP1_HMGB_SSRP1_UBTF:-0.503472794372;FOSL2:-0.50501981333;PPARG:-0.544275571944;HNF1A:-0.574685988342;HLF:-0.599841325009;NFKB1_REL_RELA:-0.60102243285;DBP:-0.606951397759;PAX4:-0.621181433029;E2F1..5:-0.683137940518;NRF1:-0.686696593479;CDC5L:-0.691525625351;ELF1,2,4:-0.755284726655;FOXN1:-0.7556840131;CEBPA,B_DDIT3:-0.76031910521;ZEB1:-0.764563072054;AHR_ARNT_ARNT2:-0.828000128646;ATF5_CREB3:-0.839420466236;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843566440145;RFX1:-0.854314711121;FOS_FOS{B,L1}_JUN{B,D}:-0.884356399199;VSX1,2:-0.899966956696;NFE2:-0.926768560501;TEF:-0.932308713956;RUNX1..3:-0.951791959845;NFIL3:-0.989996626028;NFY{A,B,C}:-1.01758415021;FOXD3:-1.01971823109;BACH2:-1.02532736365;NFE2L2:-1.05560419757;EBF1:-1.09760588894;ADNP_IRX_SIX_ZHX:-1.23844507176;PAX8:-1.24413558269;CRX:-1.34410130667;OCT4_SOX2{dimer}:-1.40533768076;bHLH_family:-1.4196924695;PRRX1,2:-1.45863059703;HIF1A:-1.47581487769;TFDP1:-1.47865591231;POU2F1..3:-1.87648666219;MYB:-1.90566371241;ELK1,4_GABP{A,B1}:-2.11824610611
|top_motifs=MEF2{A,B,C,D}:6.20431999248;NR1H4:4.51449731561;FOXL1:3.73293352504;TAL1_TCF{3,4,12}:3.68545634184;IKZF2:3.57578959382;SOX5:3.40472679666;NR5A1,2:3.36043991811;ESR1:3.28954075946;NR6A1:3.27502461839;HOX{A4,D4}:3.0038738266;SMAD1..7,9:2.89565982482;SPZ1:2.83125764952;SRF:2.60227227693;ZNF384:2.58342389552;NFE2L1:2.53320788184;GCM1,2:2.49356183782;MYBL2:2.45474000104;GLI1..3:2.30996233198;MAFB:2.20421851982;NKX2-2,8:2.18365651657;TBP:2.15176692038;FOXP3:2.12671194158;AR:2.03332867695;PDX1:1.93397193215;TFAP2{A,C}:1.88548263071;TFAP4:1.86544450228;TLX2:1.85495390667;PAX5:1.83061187502;ALX1:1.72175896499;TOPORS:1.71619505732;GATA4:1.71291875308;ATF2:1.67506916237;TGIF1:1.61480945446;RORA:1.612022436;HIC1:1.60193468607;PATZ1:1.59883984216;ESRRA:1.57982678519;MAZ:1.55955335729;NANOG{mouse}:1.54397455041;FOXM1:1.52181672296;NKX3-1:1.51568675368;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.49903024276;UFEwm:1.48965890529;IKZF1:1.48295555108;NFATC1..3:1.46927876976;POU1F1:1.43303064483;RXR{A,B,G}:1.42914958675;HOX{A6,A7,B6,B7}:1.4250568207;HMGA1,2:1.41642815434;EVI1:1.40747776993;KLF4:1.40342566236;NHLH1,2:1.38167217708;FOXP1:1.35204661901;XBP1:1.30618499179;NFIX:1.28124385792;EGR1..3:1.18817908945;RREB1:1.17590295285;ZBTB16:1.17423168966;ZNF423:1.1658551324;MYOD1:1.16430090355;HES1:1.16248508762;MTE{core}:1.15802918104;NKX2-1,4:1.15749469192;GFI1B:1.10134732319;TFAP2B:1.10086959285;GTF2A1,2:1.08595055854;HSF1,2:1.05637604662;MED-1{core}:1.05290719867;MZF1:1.04283607204;POU3F1..4:1.04204330644;LHX3,4:1.02705586706;TLX1..3_NFIC{dimer}:1.0207301289;TEAD1:0.973131910637;YY1:0.967447832494;EP300:0.927942906838;ZIC1..3:0.907616723624;BPTF:0.907354785303;NKX6-1,2:0.877974856517;TFCP2:0.876821706571;FOXQ1:0.87335830542;TBX4,5:0.860212054943;HAND1,2:0.819688010447;MTF1:0.817665486516;GTF2I:0.815506072422;RBPJ:0.796801770853;PRDM1:0.749824793886;FOXO1,3,4:0.728837091473;RXRA_VDR{dimer}:0.703899725214;STAT5{A,B}:0.678494682844;PBX1:0.677316604147;SP1:0.648610456663;SOX{8,9,10}:0.640235376914;LMO2:0.622240295135;PAX6:0.607282711053;CDX1,2,4:0.580624076013;HOX{A5,B5}:0.569983706359;PAX3,7:0.565452145056;POU6F1:0.553686777636;MYFfamily:0.551347414392;ATF6:0.53440004617;ZFP161:0.517264362773;PAX1,9:0.469765492902;NR3C1:0.453729583755;ZNF148:0.444501103383;LEF1_TCF7_TCF7L1,2:0.439474074823;IRF7:0.424403829155;ZNF238:0.402127026901;ARID5B:0.39753697501;AIRE:0.392803689357;BREu{core}:0.389721454564;NKX2-3_NKX2-5:0.365852738835;NKX3-2:0.343408642408;HOXA9_MEIS1:0.334170171693;STAT2,4,6:0.31563026156;CUX2:0.27752746599;HMX1:0.273068000674;SOX17:0.235950636003;REST:0.2194778563;JUN:0.2104578428;CREB1:0.187422388472;GZF1:0.104216687388;FOXA2:0.0988130909681;FOX{F1,F2,J1}:-0.0119007800841;ALX4:-0.0422194978551;SOX2:-0.0510147820771;POU5F1:-0.063793675955;EN1,2:-0.0897422998529;GFI1:-0.129024513457;SNAI1..3:-0.140887629501;ETS1,2:-0.146350108879;FOX{D1,D2}:-0.147474536538;PITX1..3:-0.154374706267;PAX2:-0.160425435884;SPI1:-0.188352477462;ATF4:-0.190036374567;DMAP1_NCOR{1,2}_SMARC:-0.194082904248;GATA6:-0.214169388144;STAT1,3:-0.219895146193;TP53:-0.240946614476;ONECUT1,2:-0.248728628151;SREBF1,2:-0.248814562864;IRF1,2:-0.259654715474;T:-0.259750284534;XCPE1{core}:-0.264837328814;ZNF143:-0.2895633842;HNF4A_NR2F1,2:-0.296396348241;RFX2..5_RFXANK_RFXAP:-0.353372309214;ZBTB6:-0.364514735941;NANOG:-0.419226901886;FOX{I1,J2}:-0.432144483933;SPIB:-0.467286790361;HBP1_HMGB_SSRP1_UBTF:-0.503472794372;FOSL2:-0.50501981333;PPARG:-0.544275571944;HNF1A:-0.574685988342;HLF:-0.599841325009;NFKB1_REL_RELA:-0.60102243285;DBP:-0.606951397759;PAX4:-0.621181433029;E2F1..5:-0.683137940518;NRF1:-0.686696593479;CDC5L:-0.691525625351;ELF1,2,4:-0.755284726655;FOXN1:-0.7556840131;CEBPA,B_DDIT3:-0.76031910521;ZEB1:-0.764563072054;AHR_ARNT_ARNT2:-0.828000128646;ATF5_CREB3:-0.839420466236;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.843566440145;RFX1:-0.854314711121;FOS_FOS{B,L1}_JUN{B,D}:-0.884356399199;VSX1,2:-0.899966956696;NFE2:-0.926768560501;TEF:-0.932308713956;RUNX1..3:-0.951791959845;NFIL3:-0.989996626028;NFY{A,B,C}:-1.01758415021;FOXD3:-1.01971823109;BACH2:-1.02532736365;NFE2L2:-1.05560419757;EBF1:-1.09760588894;ADNP_IRX_SIX_ZHX:-1.23844507176;PAX8:-1.24413558269;CRX:-1.34410130667;OCT4_SOX2{dimer}:-1.40533768076;bHLH_family:-1.4196924695;PRRX1,2:-1.45863059703;HIF1A:-1.47581487769;TFDP1:-1.47865591231;POU2F1..3:-1.87648666219;MYB:-1.90566371241;ELK1,4_GABP{A,B1}:-2.11824610611
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008534
|accession_numbers=DRX008642;DRR009514;DRZ000939;DRZ002324;CAGE
|library_id=CNhs11779
}}
}}

Revision as of 20:48, 16 October 2013


Name:diaphragm, fetal, donor1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:tissues
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuediaphragm
dev stage36 weeks fetus
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA912092
catalog numberCat:RtHFN: Diaphragm
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008534
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{library_id}}} {{{accession_numbers}}}
Accession ID Hg19

Library idBAMCTSS
{{{library_id}}}
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.603
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.253
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.608
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.445
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.271
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.122
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.624
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.416
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.416
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.765
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0.128
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.599
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.324
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.253
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.256
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.256
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.256
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.45
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.532
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.256
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.416
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal1.166
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.256
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.846
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea1.058
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.058
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0.416
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.624
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11779

Jaspar motifP-value
MA0002.24.36784e-4
MA0003.10.229
MA0004.10.00726
MA0006.10.947
MA0007.10.403
MA0009.10.0629
MA0014.10.412
MA0017.10.934
MA0018.20.381
MA0019.10.621
MA0024.10.0199
MA0025.10.163
MA0027.10.929
MA0028.13.30551e-10
MA0029.10.756
MA0030.10.278
MA0031.10.102
MA0035.20.0463
MA0038.10.0133
MA0039.23.14907e-4
MA0040.10.526
MA0041.10.683
MA0042.10.834
MA0043.10.0108
MA0046.15.58323e-4
MA0047.20.135
MA0048.10.0642
MA0050.10.00798
MA0051.10.016
MA0052.12.1144e-24
MA0055.10.00334
MA0057.10.738
MA0058.10.00149
MA0059.10.00197
MA0060.12.34876e-6
MA0061.12.40422e-6
MA0062.23.32754e-19
MA0065.20.253
MA0066.10.552
MA0067.10.0659
MA0068.10.0189
MA0069.10.517
MA0070.10.277
MA0071.10.235
MA0072.10.645
MA0073.10.294
MA0074.10.68
MA0076.14.5515e-14
MA0077.10.401
MA0078.10.694
MA0079.20.704
MA0080.21.1842e-7
MA0081.10.02
MA0083.10.00154
MA0084.10.145
MA0087.10.335
MA0088.10.115
MA0090.10.368
MA0091.10.0104
MA0092.10.192
MA0093.10.00459
MA0099.26.66126e-20
MA0100.10.0357
MA0101.12.3876e-5
MA0102.20.00771
MA0103.10.0271
MA0104.22.89158e-4
MA0105.16.93453e-6
MA0106.17.79244e-4
MA0107.11.80682e-5
MA0108.29.88476e-13
MA0111.10.676
MA0112.20.0356
MA0113.10.0599
MA0114.10.413
MA0115.10.704
MA0116.10.00358
MA0117.10.286
MA0119.10.0783
MA0122.10.275
MA0124.10.646
MA0125.10.912
MA0131.10.211
MA0135.10.39
MA0136.17.12446e-13
MA0137.20.201
MA0138.20.447
MA0139.10.00257
MA0140.10.127
MA0141.10.178
MA0142.14.27514e-4
MA0143.10.0923
MA0144.10.438
MA0145.10.445
MA0146.10.155
MA0147.12.39298e-4
MA0148.10.263
MA0149.10.101
MA0150.11.94337e-7
MA0152.10.0476
MA0153.10.772
MA0154.10.0741
MA0155.10.0956
MA0156.11.88442e-16
MA0157.10.122
MA0159.10.958
MA0160.10.911
MA0162.10.437
MA0163.10.137
MA0164.10.813
MA0258.10.0121
MA0259.10.0951



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11779

Novel motifP-value
10.667
100.2
1000.845
1010.276
1020.491
1030.48
1040.735
1050.808
1060.667
1070.0998
1080.106
1090.00657
110.721
1100.637
1110.959
1120.728
1130.00192
1140.306
1150.087
1160.0621
1170.0222
1180.0194
1190.232
120.729
1200.291
1210.85
1220.00187
1230.354
1240.323
1250.867
1260.603
1270.543
1280.358
1290.719
130.432
1300.464
1310.274
1320.0224
1330.0374
1340.841
1350.0837
1360.0799
1370.698
1380.951
1390.135
140.934
1400.511
1410.699
1420.387
1430.0501
1440.504
1450.946
1460.587
1470.0115
1480.23
1490.196
150.233
1500.665
1510.539
1520.797
1530.372
1540.66
1550.401
1560.798
1570.902
1580.53
1590.968
160.595
1600.437
1610.141
1620.559
1630.184
1640.317
1650.0351
1660.0253
1670.333
1680.379
1690.848
170.62
180.32
190.0261
20.0637
200.0247
210.489
220.982
230.353
240.0114
250.567
260.241
270.482
280.398
290.026
30.647
300.189
310.256
325.7549e-8
330.179
340.246
350.864
360.149
370.21
380.838
390.101
40.708
400.162
410.34
420.216
430.657
440.0799
450.463
460.762
470.207
480.204
490.953
50.696
500.826
510.912
520.222
530.644
540.854
550.255
560.345
570.866
580.623
590.79
60.629
600.223
610.33
620.965
630.547
640.424
650.689
660.00464
670.482
680.36
690.514
70.954
700.719
710.147
720.366
730.185
740.406
750.0525
760.251
770.433
780.641
790.132
80.993
800.151
810.727
820.592
830.687
840.903
850.00377
860.87
870.00286
880.928
890.36
90.767
900.699
910.0534
920.234
930.896
940.0921
950.00116
960.884
970.944
980.806
990.0609



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11779


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001134 (skeletal muscle tissue)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002426 (chest muscle)
0003831 (respiratory system muscle)
0003898 (skeletal muscle of trunk)
0004830 (respiratory system skeletal muscle)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0005090 (muscle structure)
0001630 (muscle organ)
0005177 (trunk region element)
0003830 (thoracic segment muscle)
0005175 (chest organ)
0001774 (muscle of trunk)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0001103 (diaphragm)
0001004 (respiratory system)
0002204 (musculoskeletal system)
0001443 (chest)
0000383 (musculature of body)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010069 (human diaphragm - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

{{{1}}} Accession numbers
MethodSample accession id
{{{2}}} 
Library accession numbers

Library idMethodExp. accession idRun accession id
{{{4}}} {{{3}}}
Accession ID

Library idBAMCTSS
{{{4}}}
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