FF:10444-106F3: Difference between revisions

Revision as of 16:41, 27 November 2014

Name:	glioblastoma cell line:A172
Species:	Human (Homo sapiens)
Library ID:	CNhs11248
Sample type:	cell lines
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	NA
sex	unknown
age	unknown
cell type	glioblast
cell line	A172
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005163

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11248		CAGE		DRX007897		DRR008769
CAGE		DRX007898		DRR008770

Accession ID Hg19

Library id		BAM		CTSS
CNhs11248		DRZ000194		DRZ001579
DRZ000195		DRZ001580

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. dataNo results for this sample

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0432
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.436
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.00766
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.144
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0432
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0.823
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.1
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.117
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0945
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00895
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0711
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.402
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.152
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.197
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.119
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0432
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: "CNhs11248This sample isn't target for the analysis
library id: CNhs11185

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.171
MA0003.1	MA0003.1	0.0424
MA0004.1	MA0004.1	0.499
MA0006.1	MA0006.1	0.157
MA0007.1	MA0007.1	0.0279
MA0009.1	MA0009.1	0.607
MA0014.1	MA0014.1	0.45
MA0017.1	MA0017.1	0.0144
MA0018.2	MA0018.2	0.354
MA0019.1	MA0019.1	0.841
MA0024.1	MA0024.1	3.5473e-6
MA0025.1	MA0025.1	0.294
MA0027.1	MA0027.1	0.219
MA0028.1	MA0028.1	0.064
MA0029.1	MA0029.1	0.588
MA0030.1	MA0030.1	0.482
MA0031.1	MA0031.1	0.333
MA0035.2	MA0035.2	0.252
MA0038.1	MA0038.1	1.26641e-5
MA0039.2	MA0039.2	0.054
MA0040.1	MA0040.1	0.92
MA0041.1	MA0041.1	0.664
MA0042.1	MA0042.1	0.38
MA0043.1	MA0043.1	0.00496
MA0046.1	MA0046.1	0.266
MA0047.2	MA0047.2	0.0812
MA0048.1	MA0048.1	0.175
MA0050.1	MA0050.1	0.891
MA0051.1	MA0051.1	0.107
MA0052.1	MA0052.1	0.117
MA0055.1	MA0055.1	0.204
MA0057.1	MA0057.1	0.54
MA0058.1	MA0058.1	0.708
MA0059.1	MA0059.1	0.119
MA0060.1	MA0060.1	1.11513e-8
MA0061.1	MA0061.1	0.00603
MA0062.2	MA0062.2	0.273
MA0065.2	MA0065.2	0.0015
MA0066.1	MA0066.1	0.222
MA0067.1	MA0067.1	0.584
MA0068.1	MA0068.1	0.107
MA0069.1	MA0069.1	0.425
MA0070.1	MA0070.1	0.562
MA0071.1	MA0071.1	0.449
MA0072.1	MA0072.1	0.726
MA0073.1	MA0073.1	0.942
MA0074.1	MA0074.1	0.725
MA0076.1	MA0076.1	8.91778e-4
MA0077.1	MA0077.1	0.192
MA0078.1	MA0078.1	0.685
MA0079.2	MA0079.2	0.113
MA0080.2	MA0080.2	3.24327e-7
MA0081.1	MA0081.1	0.102
MA0083.1	MA0083.1	0.886
MA0084.1	MA0084.1	0.571
MA0087.1	MA0087.1	0.487
MA0088.1	MA0088.1	0.5
MA0090.1	MA0090.1	2.78708e-6
MA0091.1	MA0091.1	0.159
MA0092.1	MA0092.1	0.389
MA0093.1	MA0093.1	0.766
MA0099.2	MA0099.2	3.32258e-11
MA0100.1	MA0100.1	0.465
MA0101.1	MA0101.1	0.51
MA0102.2	MA0102.2	0.00485
MA0103.1	MA0103.1	0.01
MA0104.2	MA0104.2	0.114
MA0105.1	MA0105.1	0.00216
MA0106.1	MA0106.1	0.991
MA0107.1	MA0107.1	0.203
MA0108.2	MA0108.2	0.0115
MA0111.1	MA0111.1	0.467
MA0112.2	MA0112.2	0.013
MA0113.1	MA0113.1	0.0834
MA0114.1	MA0114.1	0.164
MA0115.1	MA0115.1	0.654
MA0116.1	MA0116.1	0.00792
MA0117.1	MA0117.1	0.834
MA0119.1	MA0119.1	0.658
MA0122.1	MA0122.1	0.444
MA0124.1	MA0124.1	0.892
MA0125.1	MA0125.1	0.787
MA0131.1	MA0131.1	0.591
MA0135.1	MA0135.1	0.0131
MA0136.1	MA0136.1	1.02242e-4
MA0137.2	MA0137.2	0.79
MA0138.2	MA0138.2	0.0206
MA0139.1	MA0139.1	0.273
MA0140.1	MA0140.1	0.155
MA0141.1	MA0141.1	0.194
MA0142.1	MA0142.1	0.953
MA0143.1	MA0143.1	0.781
MA0144.1	MA0144.1	0.164
MA0145.1	MA0145.1	0.831
MA0146.1	MA0146.1	0.9
MA0147.1	MA0147.1	0.163
MA0148.1	MA0148.1	0.17
MA0149.1	MA0149.1	0.652
MA0150.1	MA0150.1	0.0461
MA0152.1	MA0152.1	0.574
MA0153.1	MA0153.1	0.688
MA0154.1	MA0154.1	0.0137
MA0155.1	MA0155.1	0.123
MA0156.1	MA0156.1	0.734
MA0157.1	MA0157.1	0.262
MA0159.1	MA0159.1	0.00639
MA0160.1	MA0160.1	0.293
MA0162.1	MA0162.1	0.488
MA0163.1	MA0163.1	8.65413e-8
MA0164.1	MA0164.1	0.974
MA0258.1	MA0258.1	0.0845
MA0259.1	MA0259.1	0.173

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: "CNhs11248This sample isn't target for the analysis
library id: CNhs11185

Novel motif	Logo	P-value
1	1	0.643
10	10	0.359
100	100	0.99
101	101	0.762
102	102	0.219
103	103	0.439
104	104	0.633
105	105	0.551
106	106	5.4886e-4
107	107	0.397
108	108	0.557
109	109	0.396
11	11	0.319
110	110	0.666
111	111	0.509
112	112	0.00791
113	113	0.23
114	114	0.301
115	115	0.396
116	116	0.831
117	117	0.963
118	118	0.657
119	119	0.934
12	12	0.379
120	120	0.578
121	121	0.844
122	122	0.785
123	123	0.862
124	124	0.273
125	125	0.736
126	126	0.0342
127	127	0.689
128	128	0.00681
129	129	0.408
13	13	0.0756
130	130	0.0755
131	131	0.0761
132	132	0.479
133	133	0.577
134	134	0.671
135	135	0.122
136	136	0.121
137	137	0.00945
138	138	0.275
139	139	0.00813
14	14	0.943
140	140	0.591
141	141	0.603
142	142	0.0192
143	143	0.329
144	144	0.984
145	145	0.76
146	146	0.753
147	147	0.449
148	148	0.42
149	149	0.37
15	15	0.744
150	150	0.893
151	151	0.629
152	152	0.256
153	153	0.34
154	154	0.585
155	155	0.372
156	156	0.891
157	157	0.885
158	158	0.469
159	159	0.793
16	16	0.284
160	160	0.324
161	161	0.654
162	162	0.866
163	163	0.337
164	164	0.148
165	165	0.556
166	166	0.751
167	167	0.235
168	168	0.751
169	169	0.477
17	17	0.489
18	18	0.481
19	19	0.456
2	2	0.749
20	20	0.946
21	21	0.733
22	22	0.824
23	23	0.355
24	24	0.523
25	25	0.244
26	26	0.396
27	27	0.234
28	28	0.262
29	29	0.21
3	3	0.626
30	30	0.657
31	31	0.904
32	32	0.00719
33	33	0.395
34	34	0.24
35	35	0.137
36	36	0.0152
37	37	0.504
38	38	0.843
39	39	0.186
4	4	0.847
40	40	0.0351
41	41	0.43
42	42	0.756
43	43	0.0766
44	44	0.0649
45	45	0.917
46	46	0.241
47	47	0.919
48	48	0.872
49	49	0.0676
5	5	0.0484
50	50	0.992
51	51	0.623
52	52	0.0769
53	53	0.43
54	54	0.798
55	55	0.786
56	56	0.223
57	57	0.476
58	58	0.0269
59	59	0.15
6	6	0.372
60	60	0.00246
61	61	0.969
62	62	0.0783
63	63	0.303
64	64	0.391
65	65	0.121
66	66	8.6527e-4
67	67	0.934
68	68	0.914
69	69	0.444
7	7	0.0407
70	70	0.0296
71	71	0.539
72	72	0.13
73	73	0.199
74	74	0.888
75	75	0.275
76	76	0.0324
77	77	0.656
78	78	0.515
79	79	0.164
8	8	0.748
80	80	0.915
81	81	0.522
82	82	0.527
83	83	0.875
84	84	0.838
85	85	0.00404
86	86	0.367
87	87	0.502
88	88	0.736
89	89	0.0855
9	9	0.0637
90	90	0.478
91	91	0.0965
92	92	0.271
93	93	0.555
94	94	0.173
95	95	0.124
96	96	0.118
97	97	0.143
98	98	0.0123
99	99	0.503

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: "CNhs11248
library id: CNhs11185

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100016 A-172 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101530 (glioblastoma cell line sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0100016 (A-172 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.45!279.92!LHX9;;chr7:27205136..27205164,-!p1@HOXA9!1.87!72.80!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.74!54.18!HOXB6;;chr2:176969228..176969260,+!p1@HOXD11!1.65!43.41!HOXD11;;chr10:28034739..28034756,-!p1@MKX!1.59!37.76!MKX;;chr2:176969179..176969226,+!p2@HOXD11!1.53!32.53!HOXD11;;chr7:27205106..27205134,-!p2@HOXA9!1.39!23.54!HOXA9;;chr8:60031934..60031986,-!p6@TOX!1.35!21.55!TOX;;chr6:10415276..10415341,-!p2@TFAP2A!1.28!22.07!TFAP2A;;chr2:176969097..176969109,+!p3@HOXD11!1.28!17.99!HOXD11;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.78!HOXB3;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.72!PRRX1;;chr1:151032860..151032918,+!p1@MLLT11!1.21!178.24!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.21!24.58!TOX;;chr17:46692318..46692362,-!p5@HOXB8!1.21!15.06!HOXB8;;chr15:37392094..37392116,-!p6@MEIS2!1.20!18.31!MEIS2;;chr17:46692457..46692484,-!p2@HOXB8!1.20!14.96!HOXB8;;chr5:134369905..134369972,-!p1@PITX1!1.17!21.13!PITX1;;chr8:60031809..60031835,-!p4@TOX!1.16!17.15!TOX;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!22.07!TFAP2A;;chr2:19558373..19558392,-!p1@OSR1!1.13!33.89!OSR1;;chr11:120107344..120107351,+!p1@POU2F3!1.13!15.27!POU2F3;;chr8:60031619..60031676,-!p1@TOX!1.12!26.57!TOX;;chr6:10412392..10412409,-!p4@TFAP2A!1.10!13.18!TFAP2A;;chr17:46675558..46675577,-!p2@HOXB6!1.10!11.51!HOXB6;;chr1:151032922..151032951,+!p2@MLLT11!1.09!19.04!MLLT11;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.77!KDM5D;;chr17:17726907..17726958,-!p2@SREBF1!1.06!65.80!SREBF1;;chr8:60031840..60031869,-!p5@TOX!1.06!10.36!TOX;;chr8:60031762..60031803,-!p3@TOX!1.05!14.96!TOX;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.25!BNC2;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.62!ZIC1;;chr7:27212501..27212513,-!p5@HOXA10!1.02!9.52!HOXA10;;chr15:37392724..37392757,-!p1@MEIS2!1.00!42.15!MEIS2;;chr10:28032421..28032494,-!p2@MKX!1.00!9.00!MKX;;chr3:147127177..147127194,+!p2@ZIC1!0.99!8.79!ZIC1;;chr8:11561684..11561751,+!p1@GATA4!0.98!8.58!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.97!44.46!CREB3L1;;chr21:36421535..36421610,-!p2@RUNX1!0.97!30.23!RUNX1;;chr17:46692624..46692659,-!p3@HOXB8!0.97!8.37!HOXB8;;chr10:28034395..28034404,-!p9@MKX!0.97!8.37!MKX;;chr1:170633348..170633399,+!p2@PRRX1!0.96!11.30!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!0.96!8.16!TBX1;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.16!HOXB8;;chr3:69915385..69915438,+!p3@MITF!0.95!7.85!MITF;;chr1:151032142..151032195,+!p5@MLLT11!0.94!15.17!MLLT11;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.64!ZIC2;;chr3:114343768..114343822,-!p1@ZBTB20!0.93!33.79!ZBTB20;;chr3:114343826..114343869,-!p4@ZBTB20!0.93!15.27!ZBTB20;;chr2:176969124..176969155,+!p5@HOXD11!0.91!7.11!HOXD11;;chr17:46692287..46692317,-!p7@HOXB8!0.91!7.11!HOXB8;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr2:200323414..200323455,-!p1@SATB2!0.87!14.23!SATB2;;chr2:5832508..5832524,+!p1@SOX11!0.87!6.38!SOX11;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.86!66.00!GLIS2;;chr15:37392534..37392562,-!p10@MEIS2!0.85!6.69!MEIS2;;chr9:126774018..126774055,+!p1@LHX2!0.85!6.07!LHX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.84!30.96!NFE2L3;;chr7:19157248..19157268,-!p1@TWIST1!0.84!17.47!TWIST1;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.91!HOXB2;;chr19:31840130..31840160,-!p2@TSHZ3!0.84!9.41!TSHZ3;;chr17:46622205..46622218,-!p3@HOXB2!0.84!7.01!HOXB2;;chr17:46667628..46667642,-!p2@HOXB3!0.84!5.86!HOXB3;;chr7:1577899..1577943,+!p3@MAFK!0.84!5.86!MAFK;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.84!5.86!HOXC5;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.46!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!0.82!7.64!SOX18;;chr7:28220198..28220269,-!p2@JAZF1!0.81!52.41!JAZF1;;chr5:133450365..133450444,+!p1@TCF7!0.81!26.88!TCF7;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.59!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.44!ZFY;;chr12:124873852..124873881,-!p3@NCOR2!0.80!34.73!NCOR2;;chr17:46622114..46622138,-!p4@HOXB2!0.79!8.16!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.74!HOXB7;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.65!SHOX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.78!8.89!CREB3L1;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.64!SATB2;;chr12:54380404..54380433,+!p3@HOXC10!0.77!4.92!HOXC10;;chr20:42295745..42295765,+!p1@MYBL2!0.76!85.25!MYBL2;;chr15:37392593..37392607,-!p13@MEIS2!0.76!5.86!MEIS2;;chr16:51185172..51185197,-!p1@SALL1!0.76!4.81!SALL1;;chr3:147111198..147111225,+!p4@ZIC1!0.76!4.81!ZIC1;;chr3:69915369..69915381,+!p4@MITF!0.76!4.71!MITF;;chr1:151032782..151032801,+!p4@MLLT11!0.75!9.94!MLLT11;;chr10:64134120..64134183,+!p1@ZNF365!0.75!5.65!ZNF365;;chr1:3569072..3569093,+!p1@TP73!0.75!4.60!TP73;;chr15:37392703..37392717,-!p8@MEIS2!0.74!6.69!MEIS2;;chr1:151032739..151032748,+!p6@MLLT11!0.74!5.86!MLLT11;;chr12:54332608..54332636,+!p1@HOXC13!0.74!4.50!HOXC13;;chr7:28725740..28725778,+!p1@CREB5!0.73!43.20!CREB5;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.37!NFIX;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr3:69811882..69811898,+!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@@ Line 45: / Line 45: @@
 |is_a=EFO:0002091;;FF:0000210;;FF:0100016
 |is_obsolete=
-|library_id=CNhs11248!CNhs11185
+|library_id=CNhs11248
-|library_id_phase_based=1:CNhs11185,CNhs11248
+|library_id_phase_based=2:CNhs11248
 |name=glioblastoma cell line:A172
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=NCig10059,,,
-|profile_hcage=CNhs11248 & CNhs11185,LSID757,release008,COMPLETED
+|profile_hcage="CNhs11248 & CNhs11185,LSID757,release008,COMPLETED"
-|profile_rnaseq=,,,
+|profile_rnaseq=
-|profile_srnaseq=,,,
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FF:10444-106F3: Difference between revisions

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Revision as of 16:41, 27 November 2014

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0