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{{f5samples
{{f5samples
|id=FF:10000-101A1
|ancestors_in_anatomy_facet=
|name=Clontech Human Universal Reference Total RNA, pool1
|sample_id=10000
|rna_tube_id=101A1
|rna_box=101
|rna_position=A1
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Clontech
|rna_lot_number=9052727A
|rna_catalog_number=Cat:636538
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=UNDEFINED
|sample_tissue=unclassifiable
|sample_donor(cell lot)=10-20 pool
|sample_sex=mixed
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=200
|rna_concentration=1
|sample_note=
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|profile_srnaseq=SRhi10002,,,
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|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 33:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|id=FF:10000-101A1
|is_a=FF:0000004;;FF:0000210
|is_a=FF:0000004;;FF:0000210
|name=Clontech Human Universal Reference Total RNA, pool1
|namespace=
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|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs10608,LSID656,release008,COMPLETED
|profile_rnaseq=,,,
|profile_srnaseq=SRhi10002,,,
|rna_box=101
|rna_catalog_number=Cat:636538
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=9052727A
|rna_od260/230=
|rna_od260/280=
|rna_position=A1
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=101A1
|rna_weight_ug=200
|sample_age=
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Clontech
|sample_description=
|sample_dev_stage=UNDEFINED
|sample_disease=normal
|sample_donor(cell lot)=10-20 pool
|sample_ethnicity=
|sample_experimental_condition=
|sample_id=10000
|sample_note=
|sample_sex=mixed
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=unclassifiable
|top_motifs=JUN:6.19636549629;MYB:5.03262526656;ZNF148:3.9258132206;RFX1:3.88326600633;HNF1A:3.81843847672;ATF2:3.23761077191;HNF4A_NR2F1,2:3.21391745051;SOX17:2.82171947947;SP1:2.45239801965;SOX5:2.11203643685;TBP:2.07362040991;MTF1:2.00786237975;HIC1:1.98919164164;PAX5:1.90777507519;RFX2..5_RFXANK_RFXAP:1.86630354346;MTE{core}:1.84112190866;TFAP2{A,C}:1.83023963276;ESR1:1.781716704;GCM1,2:1.77504029168;NFY{A,B,C}:1.74250922033;ZFP161:1.72555560811;MAZ:1.70732009465;PPARG:1.66268900292;GTF2I:1.60243845807;TFAP2B:1.57190834517;GFI1:1.53907669701;MED-1{core}:1.50810342169;BREu{core}:1.48108860707;NRF1:1.45675792726;EGR1..3:1.4534017545;PATZ1:1.4487894409;XCPE1{core}:1.40331235138;NKX3-2:1.40010223246;REST:1.39706496931;MYFfamily:1.33712754578;NFIX:1.32879547956;HLF:1.31133152156;ZNF423:1.23081539956;MZF1:1.19942387685;GFI1B:1.16864165319;NHLH1,2:1.15249874455;NKX2-3_NKX2-5:1.12440684622;GTF2A1,2:1.12352808545;SOX{8,9,10}:1.11519235317;RREB1:1.10650151713;SMAD1..7,9:1.09398880228;NR5A1,2:1.06214921671;SOX2:0.964965097758;ATF4:0.940663784324;ADNP_IRX_SIX_ZHX:0.916314641463;SNAI1..3:0.905273041879;ZEB1:0.876455404087;PRRX1,2:0.84554734917;ZBTB6:0.84217394371;bHLH_family:0.815582601133;TLX1..3_NFIC{dimer}:0.811279385537;TFAP4:0.808832377137;HBP1_HMGB_SSRP1_UBTF:0.792989569421;MYOD1:0.792122755029;ZNF143:0.776042536258;SRF:0.769787406648;EP300:0.757200135621;TFCP2:0.73920623275;LMO2:0.719152322423;RBPJ:0.704899102729;ESRRA:0.699637990411;FOX{D1,D2}:0.689905776886;SREBF1,2:0.681485327718;AR:0.662153905032;TBX4,5:0.557433479067;PAX6:0.53230022853;GZF1:0.483662557113;TGIF1:0.465108500366;ZIC1..3:0.461056414972;MYBL2:0.458809445881;FOXQ1:0.457977153711;HOX{A6,A7,B6,B7}:0.419393159805;EBF1:0.406888522362;FOXN1:0.37039447445;RXR{A,B,G}:0.361796289628;POU6F1:0.336792667873;CREB1:0.333195471452;PBX1:0.29051900358;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.275507294084;STAT1,3:0.25248739323;AHR_ARNT_ARNT2:0.195760652421;IRF7:0.160947997834;HMX1:0.15292922594;FOX{F1,F2,J1}:0.14023219701;CUX2:0.138186900075;NANOG{mouse}:0.131612394469;TEAD1:0.108695284217;RXRA_VDR{dimer}:0.0847886746445;SPZ1:0.0798849541628;HSF1,2:0.0747689089026;MEF2{A,B,C,D}:0.0474940090919;POU2F1..3:0.0440240079792;DBP:0.00905382971029;STAT2,4,6:5.73273422417e-06;ATF6:-0.0120124737496;ZNF238:-0.0494816876445;TFDP1:-0.0855864517186;KLF4:-0.103360433317;HIF1A:-0.107486250341;TLX2:-0.159019303123;PRDM1:-0.167703261251;DMAP1_NCOR{1,2}_SMARC:-0.171217602534;HAND1,2:-0.171443422447;YY1:-0.253225045314;PITX1..3:-0.254759430471;MAFB:-0.256400815195;ETS1,2:-0.29576983884;PAX1,9:-0.296612322519;FOXM1:-0.30612814032;FOXA2:-0.317483646165;IRF1,2:-0.319902402701;XBP1:-0.341632935248;NR3C1:-0.416843545867;FOXD3:-0.417297097652;GATA6:-0.42275948454;POU5F1:-0.425518663121;LEF1_TCF7_TCF7L1,2:-0.440484587447;E2F1..5:-0.450710147001;GLI1..3:-0.45487055698;SPIB:-0.45666042973;IKZF1:-0.470828199285;ATF5_CREB3:-0.510716887952;T:-0.541870750443;SPI1:-0.56385091802;HOX{A4,D4}:-0.610494016071;NFATC1..3:-0.611443686966;NANOG:-0.61642691802;NFIL3:-0.621810872031;ELK1,4_GABP{A,B1}:-0.68955147337;FOXP1:-0.703447818644;LHX3,4:-0.712436932877;NFE2:-0.715112802054;IKZF2:-0.768761936752;HOXA9_MEIS1:-0.797662820494;TOPORS:-0.807976935591;RORA:-0.819256783619;FOXO1,3,4:-0.819415666679;VSX1,2:-0.826788654217;CDC5L:-0.841067983553;PDX1:-0.842101866397;CEBPA,B_DDIT3:-0.855632594597;POU3F1..4:-0.865279987646;NR1H4:-0.895424688996;NFKB1_REL_RELA:-0.904479119052;GATA4:-0.930402585655;NR6A1:-0.94061375893;OCT4_SOX2{dimer}:-0.942213164147;PAX2:-0.946486969629;FOSL2:-0.99186896961;RUNX1..3:-1.04296911823;TP53:-1.04713649351;HES1:-1.08144483855;ZNF384:-1.10790401034;FOS_FOS{B,L1}_JUN{B,D}:-1.11171577627;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.15584523624;NFE2L1:-1.18249778704;ELF1,2,4:-1.19452446365;FOXP3:-1.2096934841;ZBTB16:-1.24592842184;ALX1:-1.27833964787;BACH2:-1.28871400316;NKX6-1,2:-1.31902587149;EN1,2:-1.36911183642;UFEwm:-1.39021906212;PAX3,7:-1.42698380383;TEF:-1.45014581651;NFE2L2:-1.45065309945;BPTF:-1.48635408121;NKX2-1,4:-1.53083272867;FOXL1:-1.54830253703;STAT5{A,B}:-1.55593891406;TAL1_TCF{3,4,12}:-1.66117444572;PAX8:-1.77014479396;HOX{A5,B5}:-1.97691428433;ALX4:-2.00185184634;ONECUT1,2:-2.02764886988;ARID5B:-2.12259448713;NKX3-1:-2.28806970645;POU1F1:-2.37344475927;NKX2-2,8:-2.41503931821;FOX{I1,J2}:-2.44210780567;HMGA1,2:-2.54089349018;CRX:-2.58164470952;AIRE:-2.92031543041;EVI1:-2.94715670546;CDX1,2,4:-3.7252953318;PAX4:-3.91044342329
}}
}}

Revision as of 13:51, 21 March 2012


Name:Clontech Human Universal Reference Total RNA, pool1
Species:Human (Homo sapiens)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueunclassifiable
dev stageUNDEFINED
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number9052727A
catalog numberCat:636538
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0.509
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.101
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0837
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0549
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.644
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.164
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0398
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0275
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.0275
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0172
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0.123
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.351
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0275
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0275
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0.267
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0535
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.0275
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0.0275
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.0275
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0.0275
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0535
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0779
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.123
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0275
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.0535
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.16
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.252
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0.0535
C190-colon-small-rectum-duodenum-appendix-temporal-oral0.0138
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0275
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0694
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0275
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0535
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00182
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.311
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0535
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.778
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0313
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0528
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.101
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0275
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0535
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70.267
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.0275
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.231
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0535
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.229
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.144
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.107
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.112
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0.0275
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.164
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0553
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.0275
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0535
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0275
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0759
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.201
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0275
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.045
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0.0535
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0.0535
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.0275
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0535
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0997
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0535
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.219
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.201
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.0275
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0192
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.0405
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0535
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.267
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0275
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0779
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.252
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.112
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.0275
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.0275
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330.0275
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.144
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.0275
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.123
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0.0275
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0.432
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.164
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0535
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.0275
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.0275
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0779
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.0779
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0275
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0.123
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.0535
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10608

Jaspar motifP-value
MA0002.20.00415
MA0003.10.402
MA0004.10.679
MA0006.10.966
MA0007.10.571
MA0009.10.399
MA0014.10.969
MA0017.10.31
MA0018.21.7605e-4
MA0019.10.0335
MA0024.10.391
MA0025.10.314
MA0027.10.478
MA0028.10.157
MA0029.10.2
MA0030.10.0609
MA0031.10.257
MA0035.20.145
MA0038.14.76826e-4
MA0039.20.18
MA0040.10.67
MA0041.10.0419
MA0042.10.552
MA0043.10.02
MA0046.11.96936e-16
MA0047.20.766
MA0048.10.0848
MA0050.10.338
MA0051.10.412
MA0052.10.235
MA0055.10.132
MA0057.10.746
MA0058.10.696
MA0059.10.0527
MA0060.11.19791e-22
MA0061.11.19177e-4
MA0062.20.0923
MA0065.20.434
MA0066.10.144
MA0067.10.968
MA0068.10.133
MA0069.10.859
MA0070.10.0987
MA0071.10.207
MA0072.10.722
MA0073.10.924
MA0074.10.413
MA0076.10.482
MA0077.10.155
MA0078.10.225
MA0079.20.0646
MA0080.24.33936e-4
MA0081.10.0587
MA0083.10.0745
MA0084.10.617
MA0087.10.209
MA0088.10.117
MA0090.10.946
MA0091.10.472
MA0092.10.221
MA0093.10.728
MA0099.21.3414e-11
MA0100.14.94038e-6
MA0101.19.07143e-4
MA0102.20.39
MA0103.10.955
MA0104.20.434
MA0105.12.62672e-10
MA0106.10.00174
MA0107.11.05621e-4
MA0108.29.88331e-13
MA0111.10.218
MA0112.20.00159
MA0113.10.248
MA0114.10.742
MA0115.10.0323
MA0116.14.50203e-4
MA0117.10.481
MA0119.10.0113
MA0122.10.54
MA0124.10.484
MA0125.10.249
MA0131.10.607
MA0135.10.00717
MA0136.10.00447
MA0137.20.761
MA0138.20.365
MA0139.10.472
MA0140.10.157
MA0141.10.415
MA0142.10.732
MA0143.10.189
MA0144.10.379
MA0145.10.914
MA0146.10.333
MA0147.10.233
MA0148.10.497
MA0149.10.00403
MA0150.16.68994e-5
MA0152.10.719
MA0153.13.48591e-12
MA0154.10.00162
MA0155.10.613
MA0156.10.0166
MA0157.10.378
MA0159.10.193
MA0160.10.995
MA0162.10.399
MA0163.12.18127e-8
MA0164.10.609
MA0258.10.0476
MA0259.10.63



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10608

Novel motifP-value
10.0125
100.00968
1000.702
1010.759
1020.932
1030.231
1040.518
1050.821
1060.00676
1070.164
1080.426
1090.144
110.0314
1100.0733
1110.0294
1120.072
1130.912
1140.0263
1150.971
1160.251
1170.022
1180.0634
1190.125
120.99
1200.0141
1210.52
1220.544
1230.103
1240.0961
1250.121
1260.975
1270.318
1280.0407
1290.738
130.0594
1300.254
1310.911
1320.476
1330.199
1340.251
1350.94
1360.941
1370.148
1380.27
1390.134
140.844
1400.0234
1410.0488
1420.796
1430.291
1440.721
1450.157
1460.771
1470.554
1480.0418
1490.435
150.163
1500.138
1510.457
1520.316
1530.48
1540.507
1550.897
1560.774
1570.773
1580.568
1590.858
160.226
1600.0588
1610.716
1620.824
1630.375
1641.28513e-4
1650.422
1660.692
1670.0197
1680.987
1690.0583
170.268
180.0362
190.765
20.873
200.239
210.228
220.626
230.246
240.918
250.542
260.0158
270.646
280.838
290.0254
30.0166
300.066
310.52
320.104
330.373
340.562
350.162
360.0192
370.0222
380.607
390.98
40.233
400.369
410.497
420.135
430.112
440.299
450.56
460.0268
470.152
480.15
490.434
50.196
500.992
510.373
520.938
530.793
540.426
550.156
560.383
570.075
580.5
590.227
60.463
600.091
610.437
620.151
630.179
640.324
650.385
665.91442e-5
670.294
680.443
690.992
70.239
700.0497
710.0139
720.647
730.0804
740.239
750.0106
760.044
770.565
780.00639
790.221
80.17
800.408
810.216
820.301
830.568
840.548
850.103
860.173
870.985
880.76
890.444
90.919
900.0183
910.168
920.193
930.462
940.00764
950.189
960.585
970.889
980.268
990.904



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10608


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

FF: FANTOM5
NA

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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