FF:11405-118E1: Difference between revisions
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|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.1991009262904e-208!GO:0005737;cytoplasm;1.50114252005936e-194!GO:0043226;organelle;3.71709490396108e-152!GO:0043229;intracellular organelle;7.80601982936785e-152!GO:0043231;intracellular membrane-bound organelle;2.29717140268728e-151!GO:0043227;membrane-bound organelle;3.99314650093411e-151!GO:0044444;cytoplasmic part;1.69980447611726e-144!GO:0044422;organelle part;4.56925227745205e-111!GO:0044446;intracellular organelle part;1.15623613959841e-109!GO:0032991;macromolecular complex;1.27037827881921e-76!GO:0030529;ribonucleoprotein complex;2.42858085303275e-74!GO:0044238;primary metabolic process;1.35615575347734e-72!GO:0005515;protein binding;1.54491965511139e-72!GO:0044237;cellular metabolic process;8.75289679207064e-72!GO:0005739;mitochondrion;1.8821049679575e-63!GO:0043170;macromolecule metabolic process;1.23070492503564e-62!GO:0043233;organelle lumen;2.10521577164094e-56!GO:0031974;membrane-enclosed lumen;2.10521577164094e-56!GO:0003723;RNA binding;9.05001915075012e-54!GO:0031090;organelle membrane;3.32686955274593e-53!GO:0019538;protein metabolic process;4.2908958200152e-52!GO:0005840;ribosome;8.64928564047787e-50!GO:0044428;nuclear part;1.9741876755736e-49!GO:0044260;cellular macromolecule metabolic process;1.15918490286028e-45!GO:0015031;protein transport;3.61703477812279e-45!GO:0006412;translation;8.18648346083643e-45!GO:0044267;cellular protein metabolic process;8.47283156070535e-45!GO:0003735;structural constituent of ribosome;5.82312973010275e-44!GO:0033036;macromolecule localization;8.70915863087549e-43!GO:0044429;mitochondrial part;1.08420088559769e-42!GO:0005634;nucleus;5.36271077950434e-42!GO:0009058;biosynthetic process;1.04437519726168e-41!GO:0045184;establishment of protein localization;1.76725598995646e-41!GO:0008104;protein localization;1.44873091753187e-40!GO:0005829;cytosol;1.49969094559778e-40!GO:0016043;cellular component organization and biogenesis;5.30557963699718e-40!GO:0033279;ribosomal subunit;1.92117510286224e-38!GO:0044249;cellular biosynthetic process;1.08689182379502e-37!GO:0043234;protein complex;5.62871861930023e-37!GO:0031967;organelle envelope;5.65967334977492e-37!GO:0031975;envelope;1.40156920443645e-36!GO:0009059;macromolecule biosynthetic process;1.77116830665332e-36!GO:0006396;RNA processing;7.17229335538479e-34!GO:0046907;intracellular transport;8.80890714385196e-32!GO:0031981;nuclear lumen;5.00047468659505e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.90269341233377e-29!GO:0005740;mitochondrial envelope;7.39223096707582e-29!GO:0016071;mRNA metabolic process;1.13662080811569e-28!GO:0043283;biopolymer metabolic process;6.52373919621156e-28!GO:0010467;gene expression;1.01431174518311e-27!GO:0006886;intracellular protein transport;1.26089066429315e-27!GO:0031966;mitochondrial membrane;1.82266990230102e-27!GO:0008380;RNA splicing;9.3926361719513e-27!GO:0019866;organelle inner membrane;7.06436030442955e-26!GO:0065003;macromolecular complex assembly;8.20946045342218e-26!GO:0005783;endoplasmic reticulum;6.73453023839455e-25!GO:0005743;mitochondrial inner membrane;1.11589977206171e-24!GO:0006397;mRNA processing;3.96909205047112e-24!GO:0022607;cellular component assembly;7.99330322191663e-24!GO:0044445;cytosolic part;3.72924547346741e-23!GO:0006119;oxidative phosphorylation;2.69875368701217e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.92185202457689e-22!GO:0012505;endomembrane system;1.03930601235433e-21!GO:0048770;pigment granule;9.02750923799344e-21!GO:0042470;melanosome;9.02750923799344e-21!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.47758757702018e-20!GO:0006996;organelle organization and biogenesis;4.06061163250219e-20!GO:0051649;establishment of cellular localization;6.61888374936209e-20!GO:0051641;cellular localization;8.32490195275003e-20!GO:0015934;large ribosomal subunit;8.60061359626197e-20!GO:0015935;small ribosomal subunit;1.10683640817541e-19!GO:0006457;protein folding;1.63594172772948e-19!GO:0044455;mitochondrial membrane part;2.53292884780442e-19!GO:0005654;nucleoplasm;5.35150333884639e-19!GO:0044432;endoplasmic reticulum part;8.56428025562487e-19!GO:0005681;spliceosome;1.10185537311138e-18!GO:0005794;Golgi apparatus;7.07561978555711e-18!GO:0051186;cofactor metabolic process;1.55686835377444e-17!GO:0043228;non-membrane-bound organelle;2.49124738857478e-17!GO:0043232;intracellular non-membrane-bound organelle;2.49124738857478e-17!GO:0005746;mitochondrial respiratory chain;6.40034395747945e-17!GO:0031980;mitochondrial lumen;1.3059477364996e-16!GO:0005759;mitochondrial matrix;1.3059477364996e-16!GO:0006512;ubiquitin cycle;2.43014128036224e-16!GO:0044451;nucleoplasm part;2.69566962667778e-16!GO:0008134;transcription factor binding;2.73605629214039e-16!GO:0000502;proteasome complex (sensu Eukaryota);5.76028940115563e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.10549557917329e-16!GO:0016874;ligase activity;1.16482893968459e-15!GO:0022618;protein-RNA complex assembly;1.40797729249423e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.81865540782247e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.76558771840925e-15!GO:0048193;Golgi vesicle transport;4.30121687321387e-15!GO:0019941;modification-dependent protein catabolic process;7.85178471877083e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.85178471877083e-15!GO:0016192;vesicle-mediated transport;8.45019043280929e-15!GO:0050136;NADH dehydrogenase (quinone) activity;8.53666089416187e-15!GO:0003954;NADH dehydrogenase activity;8.53666089416187e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.53666089416187e-15!GO:0044257;cellular protein catabolic process;9.02328917759394e-15!GO:0006511;ubiquitin-dependent protein catabolic process;9.50977041353008e-15!GO:0043285;biopolymer catabolic process;1.10422480820588e-14!GO:0044265;cellular macromolecule catabolic process;1.49583660349582e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.64164961070808e-14!GO:0016462;pyrophosphatase activity;1.69369140172522e-14!GO:0000166;nucleotide binding;2.23395793908779e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;2.40467886099487e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.66536201620816e-14!GO:0006732;coenzyme metabolic process;4.44696586747081e-14!GO:0017111;nucleoside-triphosphatase activity;5.64271299132825e-14!GO:0030163;protein catabolic process;5.99512482898607e-14!GO:0008135;translation factor activity, nucleic acid binding;6.26885108152331e-14!GO:0005761;mitochondrial ribosome;1.27452204197996e-13!GO:0000313;organellar ribosome;1.27452204197996e-13!GO:0006605;protein targeting;1.49660951550812e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.81352305729938e-13!GO:0009057;macromolecule catabolic process;2.73006801587351e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.37721247014035e-13!GO:0044248;cellular catabolic process;3.62085842766961e-13!GO:0051082;unfolded protein binding;3.90099636139029e-13!GO:0009055;electron carrier activity;3.92161891431005e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.22689007628075e-13!GO:0042773;ATP synthesis coupled electron transport;4.22689007628075e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.16206846403739e-13!GO:0045271;respiratory chain complex I;6.16206846403739e-13!GO:0005747;mitochondrial respiratory chain complex I;6.16206846403739e-13!GO:0005789;endoplasmic reticulum membrane;7.61412838285511e-13!GO:0005793;ER-Golgi intermediate compartment;1.0790667546481e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.70435681377327e-12!GO:0043412;biopolymer modification;2.94878441170174e-12!GO:0005730;nucleolus;1.00045241626396e-11!GO:0006464;protein modification process;1.15797028745233e-11!GO:0012501;programmed cell death;1.79985429470603e-11!GO:0006915;apoptosis;3.83239004499776e-11!GO:0003743;translation initiation factor activity;8.93336678394154e-11!GO:0003712;transcription cofactor activity;9.60538879221691e-11!GO:0048523;negative regulation of cellular process;2.48996277528842e-10!GO:0016491;oxidoreductase activity;3.25802300919561e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.82978811025338e-10!GO:0006413;translational initiation;3.98606649063763e-10!GO:0032553;ribonucleotide binding;4.18890701446854e-10!GO:0032555;purine ribonucleotide binding;4.18890701446854e-10!GO:0008219;cell death;4.22344123412213e-10!GO:0016265;death;4.22344123412213e-10!GO:0019787;small conjugating protein ligase activity;5.22895440592522e-10!GO:0008639;small protein conjugating enzyme activity;5.25538890437805e-10!GO:0043687;post-translational protein modification;6.08486109022553e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;6.64512846082812e-10!GO:0000375;RNA splicing, via transesterification reactions;6.64512846082812e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.64512846082812e-10!GO:0017076;purine nucleotide binding;6.64699774606944e-10!GO:0004842;ubiquitin-protein ligase activity;1.06487464479145e-09!GO:0006259;DNA metabolic process;1.13656661844826e-09!GO:0003676;nucleic acid binding;1.23673536426152e-09!GO:0008565;protein transporter activity;1.96121640789635e-09!GO:0005768;endosome;2.57660090545325e-09!GO:0016070;RNA metabolic process;2.74455675485356e-09!GO:0005635;nuclear envelope;2.86149946576617e-09!GO:0009259;ribonucleotide metabolic process;3.00090697487458e-09!GO:0009150;purine ribonucleotide metabolic process;3.24213912410986e-09!GO:0006163;purine nucleotide metabolic process;4.32687494905553e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.45072634560747e-09!GO:0006446;regulation of translational initiation;4.51945537916258e-09!GO:0005773;vacuole;5.58768035683436e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.78561679625936e-09!GO:0016881;acid-amino acid ligase activity;7.48645620797312e-09!GO:0006461;protein complex assembly;8.8039412985757e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.19732238223801e-09!GO:0003924;GTPase activity;9.2468504503287e-09!GO:0007049;cell cycle;1.01196957293665e-08!GO:0048519;negative regulation of biological process;1.21341419850318e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.24799736636311e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.24799736636311e-08!GO:0051188;cofactor biosynthetic process;1.35829222594453e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.46112306800944e-08!GO:0009060;aerobic respiration;1.66188892384626e-08!GO:0015986;ATP synthesis coupled proton transport;1.68177460853957e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.68177460853957e-08!GO:0009056;catabolic process;1.79915817575506e-08!GO:0009141;nucleoside triphosphate metabolic process;1.8767722072536e-08!GO:0005788;endoplasmic reticulum lumen;1.8776949435537e-08!GO:0016023;cytoplasmic membrane-bound vesicle;1.92430867361807e-08!GO:0006164;purine nucleotide biosynthetic process;1.97800346022657e-08!GO:0031988;membrane-bound vesicle;2.07199915249121e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.31489544457462e-08!GO:0031965;nuclear membrane;2.321331943532e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.56673353417612e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.97589007242435e-08!GO:0006913;nucleocytoplasmic transport;3.18124405744403e-08!GO:0009260;ribonucleotide biosynthetic process;3.50023434961672e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.683500313085e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.683500313085e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.0125993206703e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.0125993206703e-08!GO:0051169;nuclear transport;5.75400045461379e-08!GO:0016604;nuclear body;5.75400045461379e-08!GO:0019829;cation-transporting ATPase activity;5.84949263904983e-08!GO:0045333;cellular respiration;6.76271274001343e-08!GO:0044431;Golgi apparatus part;7.45477456498805e-08!GO:0042981;regulation of apoptosis;7.83012099961253e-08!GO:0031982;vesicle;7.84370858004407e-08!GO:0042254;ribosome biogenesis and assembly;8.16793293258574e-08!GO:0043067;regulation of programmed cell death;8.37359871961923e-08!GO:0031410;cytoplasmic vesicle;8.77685875084856e-08!GO:0046034;ATP metabolic process;9.27737137850947e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.14982324049357e-07!GO:0000323;lytic vacuole;1.15245419560484e-07!GO:0005764;lysosome;1.15245419560484e-07!GO:0043069;negative regulation of programmed cell death;1.61324246825587e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.8308223681959e-07!GO:0030120;vesicle coat;1.86451410156495e-07!GO:0030662;coated vesicle membrane;1.86451410156495e-07!GO:0006366;transcription from RNA polymerase II promoter;2.27142403054411e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.33460333470039e-07!GO:0043066;negative regulation of apoptosis;2.57999257838347e-07!GO:0048475;coated membrane;2.63560108689515e-07!GO:0030117;membrane coat;2.63560108689515e-07!GO:0017038;protein import;2.66391984356616e-07!GO:0005770;late endosome;3.1582224881304e-07!GO:0006754;ATP biosynthetic process;3.24838323066281e-07!GO:0006753;nucleoside phosphate metabolic process;3.24838323066281e-07!GO:0051246;regulation of protein metabolic process;3.5719340360041e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.53760854805203e-07!GO:0009117;nucleotide metabolic process;4.69862587537438e-07!GO:0044453;nuclear membrane part;5.0231489979434e-07!GO:0006099;tricarboxylic acid cycle;5.27773354368628e-07!GO:0046356;acetyl-CoA catabolic process;5.27773354368628e-07!GO:0051187;cofactor catabolic process;5.44743568636614e-07!GO:0006916;anti-apoptosis;7.01450451363227e-07!GO:0005525;GTP binding;7.26494545036318e-07!GO:0006399;tRNA metabolic process;7.5319580528372e-07!GO:0009108;coenzyme biosynthetic process;7.70935342290606e-07!GO:0007005;mitochondrion organization and biogenesis;9.57222935023813e-07!GO:0044440;endosomal part;1.04697694858422e-06!GO:0010008;endosome membrane;1.04697694858422e-06!GO:0050794;regulation of cellular process;1.16764234704607e-06!GO:0009109;coenzyme catabolic process;1.40584960813364e-06!GO:0032559;adenyl ribonucleotide binding;1.43462715683082e-06!GO:0005524;ATP binding;1.58187824116775e-06!GO:0031252;leading edge;1.6181641577738e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.62103714300673e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.62103714300673e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.62103714300673e-06!GO:0004298;threonine endopeptidase activity;1.7025192047211e-06!GO:0051726;regulation of cell cycle;1.7182810066553e-06!GO:0006084;acetyl-CoA metabolic process;1.85611530027856e-06!GO:0000074;regulation of progression through cell cycle;2.00026266488244e-06!GO:0032446;protein modification by small protein conjugation;2.09786759478422e-06!GO:0008654;phospholipid biosynthetic process;2.32401735114129e-06!GO:0030554;adenyl nucleotide binding;2.46483619723491e-06!GO:0006974;response to DNA damage stimulus;2.58609685000618e-06!GO:0016607;nuclear speck;2.59970409795261e-06!GO:0005798;Golgi-associated vesicle;2.83911616611312e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.16372135770683e-06!GO:0043038;amino acid activation;3.16630927206311e-06!GO:0006418;tRNA aminoacylation for protein translation;3.16630927206311e-06!GO:0043039;tRNA aminoacylation;3.16630927206311e-06!GO:0016567;protein ubiquitination;3.25489486445797e-06!GO:0006091;generation of precursor metabolites and energy;3.43357131900458e-06!GO:0045786;negative regulation of progression through cell cycle;3.49965685019521e-06!GO:0008361;regulation of cell size;4.12020258494809e-06!GO:0032561;guanyl ribonucleotide binding;4.30724256138384e-06!GO:0019001;guanyl nucleotide binding;4.30724256138384e-06!GO:0065002;intracellular protein transport across a membrane;4.65799212306118e-06!GO:0045454;cell redox homeostasis;4.70893828484879e-06!GO:0045259;proton-transporting ATP synthase complex;4.71863685000392e-06!GO:0003714;transcription corepressor activity;4.71863685000392e-06!GO:0022402;cell cycle process;5.54013577701989e-06!GO:0030532;small nuclear ribonucleoprotein complex;5.97596397385798e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.98050336623049e-06!GO:0000151;ubiquitin ligase complex;6.04260717388813e-06!GO:0016853;isomerase activity;6.40851528683068e-06!GO:0006752;group transfer coenzyme metabolic process;6.90062590195482e-06!GO:0016049;cell growth;7.03654197357408e-06!GO:0042623;ATPase activity, coupled;8.62521225088353e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.26338235380282e-06!GO:0000139;Golgi membrane;1.21519785682721e-05!GO:0016564;transcription repressor activity;1.33652184282407e-05!GO:0005667;transcription factor complex;1.91484202310825e-05!GO:0003713;transcription coactivator activity;1.97965843167439e-05!GO:0016887;ATPase activity;2.00024666831345e-05!GO:0005762;mitochondrial large ribosomal subunit;2.01512771729769e-05!GO:0000315;organellar large ribosomal subunit;2.01512771729769e-05!GO:0005643;nuclear pore;2.58707148000664e-05!GO:0000245;spliceosome assembly;2.65561888714155e-05!GO:0006793;phosphorus metabolic process;2.81109018821854e-05!GO:0006796;phosphate metabolic process;2.81109018821854e-05!GO:0006613;cotranslational protein targeting to membrane;2.87526165673274e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;3.18896412154119e-05!GO:0031968;organelle outer membrane;3.37221650668855e-05!GO:0050789;regulation of biological process;3.39435295063982e-05!GO:0019867;outer membrane;3.40235879805576e-05!GO:0031324;negative regulation of cellular metabolic process;3.47698523397473e-05!GO:0001558;regulation of cell growth;3.65050277513101e-05!GO:0051789;response to protein stimulus;3.88747827521938e-05!GO:0006986;response to unfolded protein;3.88747827521938e-05!GO:0051170;nuclear import;4.09860454007169e-05!GO:0016310;phosphorylation;4.55016771130005e-05!GO:0019843;rRNA binding;4.96232737035721e-05!GO:0007243;protein kinase cascade;5.04958139653317e-05!GO:0005905;coated pit;5.04958139653317e-05!GO:0006606;protein import into nucleus;5.68135203255981e-05!GO:0030133;transport vesicle;6.19211140974786e-05!GO:0003697;single-stranded DNA binding;6.20440501174402e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.66486447385662e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.70928519962152e-05!GO:0016859;cis-trans isomerase activity;6.81601251520299e-05!GO:0008026;ATP-dependent helicase activity;6.97004009814868e-05!GO:0009719;response to endogenous stimulus;7.40164246851734e-05!GO:0016787;hydrolase activity;7.48160427135997e-05!GO:0005769;early endosome;7.90396722201871e-05!GO:0006323;DNA packaging;8.23622337711712e-05!GO:0030867;rough endoplasmic reticulum membrane;8.26354019281584e-05!GO:0005791;rough endoplasmic reticulum;8.58027357658939e-05!GO:0006364;rRNA processing;8.71318988150942e-05!GO:0005048;signal sequence binding;8.71318988150942e-05!GO:0004386;helicase activity;9.2487143958002e-05!GO:0016563;transcription activator activity;9.3597436533132e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.36772078487331e-05!GO:0005741;mitochondrial outer membrane;0.000111287484459661!GO:0065004;protein-DNA complex assembly;0.000111811412312468!GO:0030036;actin cytoskeleton organization and biogenesis;0.000136338813141546!GO:0016072;rRNA metabolic process;0.000143997947737773!GO:0043566;structure-specific DNA binding;0.000166356199692188!GO:0006612;protein targeting to membrane;0.000173412900337312!GO:0046930;pore complex;0.000184296242370454!GO:0016740;transferase activity;0.000205998195722063!GO:0008610;lipid biosynthetic process;0.000216502347068102!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000216972773502376!GO:0009892;negative regulation of metabolic process;0.000228494155143802!GO:0043623;cellular protein complex assembly;0.000237423933239886!GO:0006281;DNA repair;0.000246680392635084!GO:0007264;small GTPase mediated signal transduction;0.00026627978296897!GO:0043021;ribonucleoprotein binding;0.000308630111734371!GO:0048522;positive regulation of cellular process;0.000382505792259276!GO:0008250;oligosaccharyl transferase complex;0.000396072370627649!GO:0046474;glycerophospholipid biosynthetic process;0.000398300175307785!GO:0050657;nucleic acid transport;0.000407682838826525!GO:0051236;establishment of RNA localization;0.000407682838826525!GO:0050658;RNA transport;0.000407682838826525!GO:0006403;RNA localization;0.000416381962419755!GO:0006979;response to oxidative stress;0.000418752060872382!GO:0000314;organellar small ribosomal subunit;0.0004349744362569!GO:0005763;mitochondrial small ribosomal subunit;0.0004349744362569!GO:0046467;membrane lipid biosynthetic process;0.000440581112019808!GO:0030663;COPI coated vesicle membrane;0.000465605922794758!GO:0030126;COPI vesicle coat;0.000465605922794758!GO:0016568;chromatin modification;0.000466878831680275!GO:0005885;Arp2/3 protein complex;0.000468372026560446!GO:0006414;translational elongation;0.000482960436810378!GO:0004576;oligosaccharyl transferase activity;0.000493999201652514!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000516444618422343!GO:0016481;negative regulation of transcription;0.000625986341546216!GO:0044262;cellular carbohydrate metabolic process;0.000637875300835441!GO:0003724;RNA helicase activity;0.000641910022692103!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000673243040376679!GO:0000278;mitotic cell cycle;0.000709895599298183!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000742995246049298!GO:0051276;chromosome organization and biogenesis;0.000744459502263544!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0007619212136184!GO:0016126;sterol biosynthetic process;0.000849772311670761!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000873486299963247!GO:0043284;biopolymer biosynthetic process;0.000885273708587287!GO:0009165;nucleotide biosynthetic process;0.000906744266383889!GO:0051920;peroxiredoxin activity;0.000928161339363462!GO:0009967;positive regulation of signal transduction;0.000939802656813625!GO:0018196;peptidyl-asparagine modification;0.000955314726189001!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000955314726189001!GO:0030029;actin filament-based process;0.00104495312332585!GO:0030137;COPI-coated vesicle;0.00111778921685527!GO:0040008;regulation of growth;0.00111988836930153!GO:0031902;late endosome membrane;0.00115018667108008!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00121592348570939!GO:0030176;integral to endoplasmic reticulum membrane;0.00126321289761214!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0012635206814427!GO:0030027;lamellipodium;0.00128754157404562!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00130056087731861!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00130056087731861!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00130056087731861!GO:0051427;hormone receptor binding;0.00135991905219495!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00139178054797504!GO:0016779;nucleotidyltransferase activity;0.00139413168734749!GO:0016044;membrane organization and biogenesis;0.00140975608381172!GO:0006650;glycerophospholipid metabolic process;0.00141074583246978!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00141074583246978!GO:0015399;primary active transmembrane transporter activity;0.00141074583246978!GO:0004177;aminopeptidase activity;0.00144383453850135!GO:0006626;protein targeting to mitochondrion;0.00146158583072672!GO:0006333;chromatin assembly or disassembly;0.00154446125350043!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00164577247963839!GO:0006891;intra-Golgi vesicle-mediated transport;0.00167057041639566!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00178472255783735!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00180282875255286!GO:0045045;secretory pathway;0.00180282875255286!GO:0005774;vacuolar membrane;0.00182991891054817!GO:0048471;perinuclear region of cytoplasm;0.00188762504131116!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00189323289745006!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00189323289745006!GO:0007010;cytoskeleton organization and biogenesis;0.00189954654676005!GO:0030659;cytoplasmic vesicle membrane;0.00199817669981703!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00200905831822881!GO:0001726;ruffle;0.00213524327462153!GO:0019899;enzyme binding;0.00226037553824206!GO:0035257;nuclear hormone receptor binding;0.00247591946170954!GO:0030132;clathrin coat of coated pit;0.00252261704106006!GO:0043488;regulation of mRNA stability;0.00259827802217714!GO:0043487;regulation of RNA stability;0.00259827802217714!GO:0022890;inorganic cation transmembrane transporter activity;0.00267518670274568!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00268485897404351!GO:0065009;regulation of a molecular function;0.00270543692203675!GO:0043681;protein import into mitochondrion;0.00283251562330073!GO:0051287;NAD binding;0.00296616976095899!GO:0046489;phosphoinositide biosynthetic process;0.00307833306221283!GO:0015630;microtubule cytoskeleton;0.00322358311781862!GO:0003729;mRNA binding;0.00337547638135209!GO:0042802;identical protein binding;0.00338142270700025!GO:0006839;mitochondrial transport;0.00344409327846135!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00345594680898216!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00345594680898216!GO:0015002;heme-copper terminal oxidase activity;0.00345594680898216!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00345594680898216!GO:0004129;cytochrome-c oxidase activity;0.00345594680898216!GO:0015992;proton transport;0.00347673016619244!GO:0016197;endosome transport;0.0035619492325009!GO:0019752;carboxylic acid metabolic process;0.00359147053756615!GO:0006082;organic acid metabolic process;0.00366407930916614!GO:0007040;lysosome organization and biogenesis;0.00371641292778036!GO:0006818;hydrogen transport;0.00374591518487333!GO:0008180;signalosome;0.00379966741600124!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00379966741600124!GO:0051128;regulation of cellular component organization and biogenesis;0.00383952229919549!GO:0003899;DNA-directed RNA polymerase activity;0.00403219336873447!GO:0051028;mRNA transport;0.00404989191372816!GO:0031543;peptidyl-proline dioxygenase activity;0.00427094033218231!GO:0031072;heat shock protein binding;0.00430500585395891!GO:0007050;cell cycle arrest;0.00434358903656035!GO:0006643;membrane lipid metabolic process;0.00435370281930026!GO:0065007;biological regulation;0.00446001517796343!GO:0048500;signal recognition particle;0.00447757677771239!GO:0005765;lysosomal membrane;0.00454760098892265!GO:0006740;NADPH regeneration;0.00470296814902979!GO:0006098;pentose-phosphate shunt;0.00470296814902979!GO:0005581;collagen;0.00514733820630391!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00517451541956562!GO:0051252;regulation of RNA metabolic process;0.00523970528062669!GO:0044433;cytoplasmic vesicle part;0.00525492490943757!GO:0045792;negative regulation of cell size;0.00531737176529368!GO:0051087;chaperone binding;0.00538008977394286!GO:0030134;ER to Golgi transport vesicle;0.00538008977394286!GO:0008186;RNA-dependent ATPase activity;0.00551121314774113!GO:0006749;glutathione metabolic process;0.00557504711477331!GO:0048518;positive regulation of biological process;0.00557811535604152!GO:0044437;vacuolar part;0.00558755780651841!GO:0017166;vinculin binding;0.00590476019853152!GO:0019798;procollagen-proline dioxygenase activity;0.00596215705591547!GO:0030308;negative regulation of cell growth;0.00597858312667083!GO:0048487;beta-tubulin binding;0.00601915060383637!GO:0048468;cell development;0.00616578635614988!GO:0006695;cholesterol biosynthetic process;0.00632345553834197!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00634396776880063!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00660748445531425!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00660748445531425!GO:0030118;clathrin coat;0.00663830549754102!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00663830549754102!GO:0006892;post-Golgi vesicle-mediated transport;0.00675885756228718!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00692219825298932!GO:0008632;apoptotic program;0.00705804114601578!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00715391979350055!GO:0030127;COPII vesicle coat;0.00760395776825897!GO:0012507;ER to Golgi transport vesicle membrane;0.00760395776825897!GO:0030658;transport vesicle membrane;0.00767253043188192!GO:0031418;L-ascorbic acid binding;0.00796887655033215!GO:0012506;vesicle membrane;0.00811924376299168!GO:0007033;vacuole organization and biogenesis;0.00835152085997978!GO:0006790;sulfur metabolic process;0.00840576618462011!GO:0051101;regulation of DNA binding;0.00846995039049746!GO:0003746;translation elongation factor activity;0.00859173206100134!GO:0006497;protein amino acid lipidation;0.00865002843275132!GO:0006260;DNA replication;0.00904452555726952!GO:0005869;dynactin complex;0.00911963637224111!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00922959341711994!GO:0045047;protein targeting to ER;0.00922959341711994!GO:0046483;heterocycle metabolic process;0.00937465895345928!GO:0016860;intramolecular oxidoreductase activity;0.00946930604542815!GO:0008047;enzyme activator activity;0.00946930604542815!GO:0006402;mRNA catabolic process;0.00967433367602737!GO:0006509;membrane protein ectodomain proteolysis;0.0101271801784281!GO:0033619;membrane protein proteolysis;0.0101271801784281!GO:0043492;ATPase activity, coupled to movement of substances;0.0101271801784281!GO:0033673;negative regulation of kinase activity;0.0101271801784281!GO:0006469;negative regulation of protein kinase activity;0.0101271801784281!GO:0045892;negative regulation of transcription, DNA-dependent;0.0103469180027351!GO:0000785;chromatin;0.0103741156207424!GO:0043433;negative regulation of transcription factor activity;0.0103786599540164!GO:0006383;transcription from RNA polymerase III promoter;0.010384540471811!GO:0008139;nuclear localization sequence binding;0.0107159704970275!GO:0006644;phospholipid metabolic process;0.0107177490801845!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0110554846216758!GO:0007006;mitochondrial membrane organization and biogenesis;0.0111053513550749!GO:0006778;porphyrin metabolic process;0.0112635027180773!GO:0033013;tetrapyrrole metabolic process;0.0112635027180773!GO:0006672;ceramide metabolic process;0.0112962095321798!GO:0050811;GABA receptor binding;0.0114429988993797!GO:0050662;coenzyme binding;0.0115173613901791!GO:0008430;selenium binding;0.0116835945097618!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.011841157681904!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0118591059969033!GO:0006352;transcription initiation;0.0119353713784742!GO:0008637;apoptotic mitochondrial changes;0.0120287234833633!GO:0051348;negative regulation of transferase activity;0.0120913117230629!GO:0005694;chromosome;0.0121223704614935!GO:0030145;manganese ion binding;0.0121867900817449!GO:0051168;nuclear export;0.0122132397320456!GO:0043022;ribosome binding;0.0124586130964757!GO:0030041;actin filament polymerization;0.0125034013040479!GO:0006769;nicotinamide metabolic process;0.0127686651021323!GO:0008092;cytoskeletal protein binding;0.0128457667321243!GO:0005813;centrosome;0.0129032848413701!GO:0042158;lipoprotein biosynthetic process;0.013101094420443!GO:0004004;ATP-dependent RNA helicase activity;0.0131106962624221!GO:0030503;regulation of cell redox homeostasis;0.0131958354674781!GO:0006595;polyamine metabolic process;0.0133411211477167!GO:0030119;AP-type membrane coat adaptor complex;0.0133421387108679!GO:0046519;sphingoid metabolic process;0.0140827852691466!GO:0006984;ER-nuclear signaling pathway;0.0141086990106914!GO:0000059;protein import into nucleus, docking;0.0146365470891141!GO:0005862;muscle thin filament tropomyosin;0.0150099396894314!GO:0006739;NADP metabolic process;0.0150153307095811!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0154964430340933!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0160425191429203!GO:0044255;cellular lipid metabolic process;0.0168976438980141!GO:0031272;regulation of pseudopodium formation;0.0168976438980141!GO:0031269;pseudopodium formation;0.0168976438980141!GO:0031344;regulation of cell projection organization and biogenesis;0.0168976438980141!GO:0031268;pseudopodium organization and biogenesis;0.0168976438980141!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0168976438980141!GO:0031274;positive regulation of pseudopodium formation;0.0168976438980141!GO:0044420;extracellular matrix part;0.0175192720743593!GO:0030521;androgen receptor signaling pathway;0.0176864818509421!GO:0000049;tRNA binding;0.0177156466114271!GO:0008629;induction of apoptosis by intracellular signals;0.0177851721343765!GO:0008312;7S RNA binding;0.0178323859955419!GO:0008154;actin polymerization and/or depolymerization;0.01804908396988!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.01804908396988!GO:0016363;nuclear matrix;0.0184038917010157!GO:0007034;vacuolar transport;0.0184879355135417!GO:0051270;regulation of cell motility;0.0189726814994376!GO:0006334;nucleosome assembly;0.0191763647233674!GO:0016251;general RNA polymerase II transcription factor activity;0.0199356888948307!GO:0016408;C-acyltransferase activity;0.0201876447386786!GO:0030660;Golgi-associated vesicle membrane;0.0202453291232651!GO:0006354;RNA elongation;0.0203355155627231!GO:0004674;protein serine/threonine kinase activity;0.0203355155627231!GO:0042168;heme metabolic process;0.0205932295580722!GO:0006767;water-soluble vitamin metabolic process;0.020706660796901!GO:0031497;chromatin assembly;0.020806908745231!GO:0003690;double-stranded DNA binding;0.020806908745231!GO:0019222;regulation of metabolic process;0.0214283301702772!GO:0031625;ubiquitin protein ligase binding;0.0214297712779412!GO:0031901;early endosome membrane;0.0217436552704213!GO:0035035;histone acetyltransferase binding;0.0217436552704213!GO:0051329;interphase of mitotic cell cycle;0.0218184934808239!GO:0030833;regulation of actin filament polymerization;0.0219318207760952!GO:0001516;prostaglandin biosynthetic process;0.022096690615126!GO:0046457;prostanoid biosynthetic process;0.022096690615126!GO:0005815;microtubule organizing center;0.0222777864509689!GO:0045926;negative regulation of growth;0.0227470391395386!GO:0004860;protein kinase inhibitor activity;0.0227470391395386!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0227470391395386!GO:0030518;steroid hormone receptor signaling pathway;0.0228669903245804!GO:0005684;U2-dependent spliceosome;0.022883733155327!GO:0000209;protein polyubiquitination;0.0231055204900403!GO:0030131;clathrin adaptor complex;0.0233025857348052!GO:0006118;electron transport;0.0233307632234523!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0238049134078797!GO:0033043;regulation of organelle organization and biogenesis;0.0238049134078797!GO:0033559;unsaturated fatty acid metabolic process;0.0238177817486738!GO:0006636;unsaturated fatty acid biosynthetic process;0.0238177817486738!GO:0031529;ruffle organization and biogenesis;0.0238595853646333!GO:0000096;sulfur amino acid metabolic process;0.0239270042235585!GO:0016272;prefoldin complex;0.0240014390944143!GO:0022406;membrane docking;0.0240387796609732!GO:0048278;vesicle docking;0.0240387796609732!GO:0005583;fibrillar collagen;0.0240387796609732!GO:0030880;RNA polymerase complex;0.0243497509496745!GO:0035258;steroid hormone receptor binding;0.0245213830406184!GO:0006506;GPI anchor biosynthetic process;0.0252771280085286!GO:0045893;positive regulation of transcription, DNA-dependent;0.0254637671627792!GO:0030984;kininogen binding;0.0262483218139327!GO:0004213;cathepsin B activity;0.0262483218139327!GO:0003711;transcription elongation regulator activity;0.0268182861909061!GO:0051539;4 iron, 4 sulfur cluster binding;0.0269801140497193!GO:0005832;chaperonin-containing T-complex;0.0279009054615376!GO:0043065;positive regulation of apoptosis;0.0279333576811835!GO:0032507;maintenance of cellular protein localization;0.0279333576811835!GO:0030384;phosphoinositide metabolic process;0.0280248141423745!GO:0051098;regulation of binding;0.0282044912902431!GO:0022408;negative regulation of cell-cell adhesion;0.0282044912902431!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0289847718406806!GO:0004784;superoxide dismutase activity;0.0289847718406806!GO:0006904;vesicle docking during exocytosis;0.0293760754894807!GO:0040011;locomotion;0.0296044189164103!GO:0031124;mRNA 3'-end processing;0.0296520722630267!GO:0015036;disulfide oxidoreductase activity;0.0298322406478281!GO:0032940;secretion by cell;0.030042608197839!GO:0032984;macromolecular complex disassembly;0.0303807652722762!GO:0044427;chromosomal part;0.0306622124285417!GO:0030032;lamellipodium biogenesis;0.030754872598655!GO:0006401;RNA catabolic process;0.0311420704781903!GO:0005099;Ras GTPase activator activity;0.0315788740629806!GO:0051540;metal cluster binding;0.0316334897913966!GO:0051536;iron-sulfur cluster binding;0.0316334897913966!GO:0006779;porphyrin biosynthetic process;0.0316690874041892!GO:0033014;tetrapyrrole biosynthetic process;0.0316690874041892!GO:0015631;tubulin binding;0.032094212332536!GO:0043068;positive regulation of programmed cell death;0.0322368492421298!GO:0006733;oxidoreduction coenzyme metabolic process;0.032237326282668!GO:0016125;sterol metabolic process;0.0325407746191948!GO:0008147;structural constituent of bone;0.0325407746191948!GO:0006897;endocytosis;0.0327647812185802!GO:0010324;membrane invagination;0.0327647812185802!GO:0045334;clathrin-coated endocytic vesicle;0.0327647812185802!GO:0045941;positive regulation of transcription;0.0327910717290175!GO:0001836;release of cytochrome c from mitochondria;0.033258637134928!GO:0005606;laminin-1 complex;0.033258637134928!GO:0005096;GTPase activator activity;0.033258637134928!GO:0005669;transcription factor TFIID complex;0.033258637134928!GO:0040012;regulation of locomotion;0.0333053748572228!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0333053748572228!GO:0007021;tubulin folding;0.0340663970605013!GO:0007030;Golgi organization and biogenesis;0.0347033338214321!GO:0000339;RNA cap binding;0.0348443303997471!GO:0008033;tRNA processing;0.0350333429409299!GO:0003756;protein disulfide isomerase activity;0.0351387815058125!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0351387815058125!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0359662881261986!GO:0000082;G1/S transition of mitotic cell cycle;0.036030261263921!GO:0007242;intracellular signaling cascade;0.0360809832843824!GO:0043624;cellular protein complex disassembly;0.0367788405223233!GO:0000030;mannosyltransferase activity;0.0371500758113218!GO:0006505;GPI anchor metabolic process;0.0373027818481202!GO:0008538;proteasome activator activity;0.0386319880675332!GO:0008320;protein transmembrane transporter activity;0.0404368250621712!GO:0001953;negative regulation of cell-matrix adhesion;0.0404368250621712!GO:0030125;clathrin vesicle coat;0.0407863017754976!GO:0030665;clathrin coated vesicle membrane;0.0407863017754976!GO:0050790;regulation of catalytic activity;0.0408526244480901!GO:0003702;RNA polymerase II transcription factor activity;0.0411293612636643!GO:0005637;nuclear inner membrane;0.0416094885762475!GO:0030508;thiol-disulfide exchange intermediate activity;0.0416094885762475!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0418613525163128!GO:0000428;DNA-directed RNA polymerase complex;0.0418613525163128!GO:0004722;protein serine/threonine phosphatase activity;0.0425633014520601!GO:0007569;cell aging;0.0425633014520601!GO:0008287;protein serine/threonine phosphatase complex;0.0428146587308896!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0431124644069173!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0432325300464773!GO:0006520;amino acid metabolic process;0.0435117971353479!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0436258034439135!GO:0008383;manganese superoxide dismutase activity;0.0441413219693763!GO:0001315;age-dependent response to reactive oxygen species;0.0441413219693763!GO:0030911;TPR domain binding;0.0445350252578958!GO:0005801;cis-Golgi network;0.0445963917667665!GO:0045185;maintenance of protein localization;0.0450622515078047!GO:0046426;negative regulation of JAK-STAT cascade;0.045988546322954!GO:0051059;NF-kappaB binding;0.0466873186520374!GO:0051235;maintenance of localization;0.0469125694080366!GO:0007041;lysosomal transport;0.0469125694080366!GO:0008234;cysteine-type peptidase activity;0.0469721958872372!GO:0043241;protein complex disassembly;0.0471079706255571!GO:0031301;integral to organelle membrane;0.0471079706255571!GO:0051336;regulation of hydrolase activity;0.0477815914841675!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0478736421951815!GO:0006458;'de novo' protein folding;0.047906421025846!GO:0051084;'de novo' posttranslational protein folding;0.047906421025846!GO:0047485;protein N-terminus binding;0.0484728877708558!GO:0006376;mRNA splice site selection;0.0486038784068819!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0486038784068819!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0488266963874487!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0488266963874487!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0488266963874487!GO:0010257;NADH dehydrogenase complex assembly;0.0488266963874487!GO:0033108;mitochondrial respiratory chain complex assembly;0.0488266963874487!GO:0051301;cell division;0.0489498750714162!GO:0031371;ubiquitin conjugating enzyme complex;0.0490357729110184!GO:0006807;nitrogen compound metabolic process;0.049074396647442!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0496436995384856 | |||
|sample_id=11405 | |sample_id=11405 | ||
|sample_note= | |sample_note= | ||
Revision as of 20:34, 25 June 2012
| Name: | Prostate Stromal Cells, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | {{{library_id}}} |
| Sample type: | {{{sample_category}}} |
| Genomic View: | UCSC |
| CAGEd-oPOSSUM: | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
no result for this sample
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12015
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12015
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.35 |
| 10 | 10 | 0.464 |
| 100 | 100 | 0.294 |
| 101 | 101 | 0.496 |
| 102 | 102 | 0.274 |
| 103 | 103 | 0.772 |
| 104 | 104 | 0.841 |
| 105 | 105 | 0.151 |
| 106 | 106 | 0.409 |
| 107 | 107 | 0.0655 |
| 108 | 108 | 0.0804 |
| 109 | 109 | 0.795 |
| 11 | 11 | 0.928 |
| 110 | 110 | 0.687 |
| 111 | 111 | 0.643 |
| 112 | 112 | 0.457 |
| 113 | 113 | 0.661 |
| 114 | 114 | 0.673 |
| 115 | 115 | 0.00543 |
| 116 | 116 | 0.0788 |
| 117 | 117 | 0.697 |
| 118 | 118 | 0.675 |
| 119 | 119 | 0.56 |
| 12 | 12 | 0.44 |
| 120 | 120 | 0.19 |
| 121 | 121 | 0.249 |
| 122 | 122 | 0.0227 |
| 123 | 123 | 0.0214 |
| 124 | 124 | 0.396 |
| 125 | 125 | 0.784 |
| 126 | 126 | 0.909 |
| 127 | 127 | 0.859 |
| 128 | 128 | 0.238 |
| 129 | 129 | 0.189 |
| 13 | 13 | 0.493 |
| 130 | 130 | 0.909 |
| 131 | 131 | 0.274 |
| 132 | 132 | 0.133 |
| 133 | 133 | 0.453 |
| 134 | 134 | 0.432 |
| 135 | 135 | 0.625 |
| 136 | 136 | 0.162 |
| 137 | 137 | 0.0985 |
| 138 | 138 | 0.39 |
| 139 | 139 | 0.544 |
| 14 | 14 | 0.364 |
| 140 | 140 | 0.99 |
| 141 | 141 | 0.12 |
| 142 | 142 | 0.645 |
| 143 | 143 | 0.925 |
| 144 | 144 | 0.206 |
| 145 | 145 | 0.826 |
| 146 | 146 | 0.691 |
| 147 | 147 | 0.337 |
| 148 | 148 | 0.534 |
| 149 | 149 | 0.0657 |
| 15 | 15 | 0.22 |
| 150 | 150 | 0.402 |
| 151 | 151 | 0.505 |
| 152 | 152 | 0.00774 |
| 153 | 153 | 0.307 |
| 154 | 154 | 0.0985 |
| 155 | 155 | 0.0175 |
| 156 | 156 | 0.476 |
| 157 | 157 | 0.92 |
| 158 | 158 | 0.0248 |
| 159 | 159 | 0.613 |
| 16 | 16 | 0.136 |
| 160 | 160 | 0.873 |
| 161 | 161 | 0.798 |
| 162 | 162 | 0.215 |
| 163 | 163 | 0.796 |
| 164 | 164 | 0.0502 |
| 165 | 165 | 0.414 |
| 166 | 166 | 0.0458 |
| 167 | 167 | 0.388 |
| 168 | 168 | 0.845 |
| 169 | 169 | 0.0693 |
| 17 | 17 | 0.862 |
| 18 | 18 | 0.576 |
| 19 | 19 | 0.0153 |
| 2 | 2 | 0.136 |
| 20 | 20 | 0.48 |
| 21 | 21 | 0.32 |
| 22 | 22 | 0.155 |
| 23 | 23 | 0.563 |
| 24 | 24 | 0.579 |
| 25 | 25 | 0.0557 |
| 26 | 26 | 0.805 |
| 27 | 27 | 0.49 |
| 28 | 28 | 0.0894 |
| 29 | 29 | 0.568 |
| 3 | 3 | 0.862 |
| 30 | 30 | 0.468 |
| 31 | 31 | 0.391 |
| 32 | 32 | 6.72895e-12 |
| 33 | 33 | 0.518 |
| 34 | 34 | 0.574 |
| 35 | 35 | 0.723 |
| 36 | 36 | 0.0257 |
| 37 | 37 | 0.0922 |
| 38 | 38 | 0.315 |
| 39 | 39 | 0.403 |
| 4 | 4 | 0.151 |
| 40 | 40 | 0.614 |
| 41 | 41 | 0.0789 |
| 42 | 42 | 0.268 |
| 43 | 43 | 0.73 |
| 44 | 44 | 0.0441 |
| 45 | 45 | 0.727 |
| 46 | 46 | 0.815 |
| 47 | 47 | 0.6 |
| 48 | 48 | 0.368 |
| 49 | 49 | 0.242 |
| 5 | 5 | 0.395 |
| 50 | 50 | 0.524 |
| 51 | 51 | 0.634 |
| 52 | 52 | 0.573 |
| 53 | 53 | 0.217 |
| 54 | 54 | 0.57 |
| 55 | 55 | 0.168 |
| 56 | 56 | 0.762 |
| 57 | 57 | 0.42 |
| 58 | 58 | 0.147 |
| 59 | 59 | 0.162 |
| 6 | 6 | 0.633 |
| 60 | 60 | 0.745 |
| 61 | 61 | 0.693 |
| 62 | 62 | 0.399 |
| 63 | 63 | 0.43 |
| 64 | 64 | 0.482 |
| 65 | 65 | 0.551 |
| 66 | 66 | 0.0927 |
| 67 | 67 | 0.78 |
| 68 | 68 | 0.818 |
| 69 | 69 | 0.448 |
| 7 | 7 | 0.0592 |
| 70 | 70 | 0.796 |
| 71 | 71 | 0.996 |
| 72 | 72 | 0.569 |
| 73 | 73 | 0.00895 |
| 74 | 74 | 0.331 |
| 75 | 75 | 0.872 |
| 76 | 76 | 0.999 |
| 77 | 77 | 0.0961 |
| 78 | 78 | 0.189 |
| 79 | 79 | 1.93619e-4 |
| 8 | 8 | 0.314 |
| 80 | 80 | 0.149 |
| 81 | 81 | 0.807 |
| 82 | 82 | 0.272 |
| 83 | 83 | 0.0416 |
| 84 | 84 | 0.726 |
| 85 | 85 | 0.186 |
| 86 | 86 | 0.427 |
| 87 | 87 | 0.108 |
| 88 | 88 | 0.488 |
| 89 | 89 | 0.132 |
| 9 | 9 | 0.812 |
| 90 | 90 | 0.478 |
| 91 | 91 | 0.85 |
| 92 | 92 | 0.644 |
| 93 | 93 | 0.193 |
| 94 | 94 | 0.979 |
| 95 | 95 | 0.3 |
| 96 | 96 | 0.473 |
| 97 | 97 | 0.862 |
| 98 | 98 | 0.313 |
| 99 | 99 | 0.00617 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12015
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
FF:0000277 human prostate stromal cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0000034 (stem cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000499 (stromal cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0002622 (prostate stromal cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002367 (prostate gland)
0002100 (trunk)
0000483 (epithelium)
0002530 (gland)
0002384 (connective tissue)
0000926 (mesoderm)
0000479 (tissue)
0001007 (digestive system)
0005156 (reproductive structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006554 (urinary system structure)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0000990 (reproductive system)
0002050 (embryonic structure)
0005153 (epithelial bud)
0005911 (endo-epithelium)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0000162 (cloaca)
0005423 (developing anatomical structure)
0000477 (anatomical cluster)
0000481 (multi-tissue structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0005291 (embryonic tissue)
0003102 (surface structure)
0003929 (gut epithelium)
0003104 (mesenchyme)
0010147 (male accessory sex gland)
0005256 (trunk mesenchyme)
0000925 (endoderm)
0006598 (presumptive structure)
0009846 (embryonic cloacal epithelium)
0004185 (endodermal part of digestive tract)
0005157 (epithelial fold)
0003937 (sex gland)
0005399 (male reproductive gland)
0002532 (epiblast (generic))
0003353 (epithelium of hindgut)
0004902 (urogenital sinus epithelium)
0001555 (digestive tract)
0001008 (renal system)
0003101 (male organism)
0004122 (genitourinary system)
0001353 (anal region)
0000163 (embryonic cloaca)
0000079 (male reproductive system)
0007026 (primitive gut)
0006866 (terminal part of digestive tract)
0009142 (entire embryonic mesenchyme)
0001046 (hindgut)
0000164 (primitive urogenital sinus)
0003064 (intermediate mesoderm)
0006595 (presumptive endoderm)
0006603 (presumptive mesoderm)
0000931 (proctodeum)
0003820 (prostate bud)
0009847 (prostate field)
FF: FANTOM5
NA
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
