FF:10039-101F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005167 | ||
|accession_numbers=CAGE;DRX008669;DRR009541;DRZ000966;DRZ002351;DRZ012316;DRZ013701 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002022,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010039 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.49!308.36!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.35!222.04!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.27!183.52!OLIG1;;chr17:53342311..53342400,+!p1@HLF!2.10!141.49!HLF;;chr9:77112244..77112262,+!p1@RORB!2.01!112.63!RORB;;chr22:38380543..38380569,-!p1@SOX10!2.01!100.78!SOX10;;chr9:114287433..114287513,+!p1@ZNF483!1.98!236.98!ZNF483;;chr14:29235961..29236008,+!p1@FOXG1!1.97!92.89!FOXG1;;chr4:57547454..57547469,-!p1@HOPX!1.91!79.46!HOPX;;chr21:34398234..34398250,+!p1@OLIG2!1.88!75.57!OLIG2;;chr2:2334997..2335053,-!p1@MYT1L!1.88!75.21!MYT1L;;chr15:80733570..80733659,+!p2@ARNT2!1.87!72.47!ARNT2;;chr17:37764128..37764258,-!p1@NEUROD2!1.86!71.75!NEUROD2;;chr5:88178983..88179012,-!p1@MEF2C!1.82!474.45!MEF2C;;chr11:61520075..61520136,+!p1@C11orf9!1.82!132.92!C11orf9;;chr2:162272785..162272836,+!p1@TBR1!1.82!64.76!TBR1;;chr2:166326200..166326216,+!p1@CSRNP3!1.80!88.82!CSRNP3;;chr2:95963052..95963106,+!p1@KCNIP3!1.76!55.95!KCNIP3;;chr3:181429704..181429722,+!p1@SOX2!1.74!53.95!SOX2;;chr10:64134120..64134183,+!p1@ZNF365!1.73!63.30!ZNF365;;chr15:80735246..80735321,+!p3@ARNT2!1.72!51.58!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.76!PRDM8;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.99!ZMAT4;;chr2:145277882..145277967,-!p3@ZEB2!1.65!74.05!ZEB2;;chr7:31380292..31380351,-!p1@NEUROD6!1.62!40.28!NEUROD6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.58!36.94!POU3F3;;chr5:88179017..88179046,-!p2@MEF2C!1.57!141.24!MEF2C;;chr18:53070846..53070902,-!p6@TCF4!1.57!35.84!TCF4;;chrX:25034067..25034088,-!p1@ARX!1.55!34.08!ARX;;chr12:26277817..26277863,-!p2@BHLHE41!1.54!45.38!BHLHE41;;chr14:29234581..29234601,+!p2@FOXG1!1.54!33.35!FOXG1;;chr15:80696703..80696754,+!p1@ARNT2!1.52!42.04!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.52!31.95!TEF;;chr14:29236269..29236285,+!p3@FOXG1!1.51!31.35!FOXG1;;chr21:34442540..34442560,+!p2@OLIG1!1.51!31.35!OLIG1;;chr3:181429741..181429767,+!p2@SOX2!1.51!31.29!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.50!30.50!NFIX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.49!30.25!SMARCE1;;chr11:125034640..125034655,+!p1@PKNOX2!1.49!30.07!PKNOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.47!28.55!ZIM2;;chr2:60781201..60781258,-!p3@BCL11A!1.47!28.25!BCL11A;;chr1:2461692..2461710,-!p1@HES5!1.45!27.16!HES5;;chr8:53322304..53322340,-!p1@ST18!1.45!27.03!ST18;;chr1:244214577..244214593,+!p1@ZNF238!1.45!26.97!ZNF238;;chr14:33403881..33403924,+!p1@NPAS3!1.44!26.61!NPAS3;;chr19:13135582..13135600,+!p3@NFIX!1.44!26.61!NFIX;;chr11:8102846..8102892,+!p1@TUB!1.43!35.84!TUB;;chr4:57522166..57522260,-!p2@HOPX!1.42!28.92!HOPX;;chr2:95963120..95963136,+!p2@KCNIP3!1.42!25.09!KCNIP3;;chr2:162272889..162272915,+!p2@TBR1!1.40!23.94!TBR1;;chr12:106976774..106976788,+!p1@RFX4!1.37!22.54!RFX4;;chr1:151032860..151032918,+!p1@MLLT11!1.34!238.69!MLLT11;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.78!HIF3A;;chr16:1031762..1031781,+!p1@SOX8!1.33!20.59!SOX8;;chrX:85969626..85969664,+!p1@DACH2!1.33!20.41!DACH2;;chr3:24536253..24536328,-!p1@THRB!1.31!35.90!THRB;;chr19:38720294..38720348,-!p1@DPF1!1.31!24.06!DPF1;;chr12:54779511..54779577,-!p5@ZNF385A!1.31!19.32!ZNF385A;;chrY:21906594..21906622,-!p1@KDM5D!1.30!18.95!KDM5D;;chr7:63505799..63505904,+!p1@ZNF727!1.29!18.59!ZNF727;;chr11:113930425..113930471,+!p1@ZBTB16!1.27!25.33!ZBTB16;;chr2:166428839..166428859,+!p2@CSRNP3!1.27!17.50!CSRNP3;;chr19:38085768..38085821,+!p1@ZNF540!1.26!25.82!ZNF540;;chr1:214161272..214161322,+!p1@PROX1!1.26!23.87!PROX1;;chr12:106976678..106976708,+!p2@RFX4!1.26!17.37!RFX4;;chr6:15401104..15401166,+!p5@JARID2!1.26!17.07!JARID2;;chr9:126774018..126774055,+!p1@LHX2!1.25!16.77!LHX2;;chr6:19837592..19837621,+!p1@ID4!1.24!99.02!ID4;;chr8:22550982..22550999,-!p1@EGR3!1.24!45.87!EGR3;;chrX:118739835..118739862,-!p1@NKRF!1.24!18.16!NKRF;;chr19:58545454..58545498,+!p1@ZSCAN1!1.24!16.22!ZSCAN1;;chr17:7492684..7492778,-!p2@SOX15!1.23!33.41!SOX15;;chr10:48355030..48355090,+!p1@ZNF488!1.21!19.80!ZNF488;;chr2:73520667..73520683,-!p1@EGR4!1.21!15.19!EGR4;;chr11:125034605..125034636,+!p2@PKNOX2!1.20!14.88!PKNOX2;;chr4:57522598..57522664,-!p3@HOPX!1.19!14.52!HOPX;;chr2:42721205..42721307,+!p4@MTA3!1.19!14.34!MTA3;;chr5:92920256..92920282,+!p7@NR2F1!1.18!17.01!NR2F1;;chr10:64133862..64133884,+!p4@ZNF365!1.18!14.28!ZNF365;;chr2:2335109..2335134,-!p2@MYT1L!1.18!14.15!MYT1L;;chr3:141105705..141105770,+!p4@ZBTB38!1.17!16.71!ZBTB38;;chr12:24102576..24102623,-!p2@SOX5!1.17!13.91!SOX5;;chr10:134599649..134599653,-!p1@NKX6-2!1.16!13.49!NKX6-2;;chr11:31832658..31832681,-!p1@PAX6!1.16!13.30!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.15!47.38!BHLHE41;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.07!SATB2;;chr1:151032922..151032951,+!p2@MLLT11!1.15!21.63!MLLT11;;chr3:21792682..21792720,-!p1@ZNF385D!1.15!13.00!ZNF385D;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.14!12.76!POU3F3;;chr1:8585945..8586056,-!p3@RERE!1.13!41.67!RERE;;chr5:92919375..92919438,+!p6@NR2F1!1.13!13.61!NR2F1;;chr10:119302232..119302265,+!p1@EMX2!1.13!12.58!EMX2;;chr2:162272716..162272753,+!p3@TBR1!1.12!12.21!TBR1;;chrX:118739782..118739829,-!p2@NKRF!1.12!12.21!NKRF;;chr3:24536332..24536358,-!p2@THRB!1.12!12.15!THRB;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.97!IRF8;;chr8:145560371..145560449,-!p1@SCRT1!1.11!11.79!SCRT1;;chr8:53322347..53322378,-!p2@ST18!1.11!11.79!ST18;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.01!NFIX;;chr6:126112039..126112062,+!p8@NCOA7!1.10!13.91!NCOA7;;chr19:46800289..46800327,+!p2@HIF3A!1.10!11.54!HIF3A;;chrY:21906761..21906810,-!p2@KDM5D!1.10!11.48!KDM5D;;chr7:150974206..150974255,-!p1@SMARCD3!1.09!70.29!SMARCD3;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.77!ZNF385A;;chr8:93074803..93074845,-!p1@RUNX1T1!1.07!10.75!RUNX1T1;;chr2:172949484..172949522,+!p1@DLX1!1.07!10.69!DLX1;;chr2:157189180..157189290,-!p1@NR4A2!1.06!55.77!NR4A2;;chr11:8102819..8102845,+!p3@TUB!1.06!13.12!TUB;;chr2:166428861..166428883,+!p3@CSRNP3!1.06!10.45!CSRNP3;;chr7:73038839..73038862,-!p1@MLXIPL!1.06!10.39!MLXIPL;;chr2:60780607..60780624,-!p2@BCL11A!1.04!30.92!BCL11A;;chr5:88179230..88179270,-!p4@MEF2C!1.04!19.44!MEF2C;;chr6:143266185..143266238,-!p2@HIVEP2!1.04!13.91!HIVEP2;;chr17:70117153..70117174,+!p1@SOX9!1.03!101.27!SOX9;;chr2:180726291..180726311,-!p1@ZNF385B!1.03!9.72!ZNF385B;;chr5:138609489..138609542,+!p8@MATR3!1.03!9.66!MATR3;;chr18:53070913..53070933,-!p16@TCF4!1.03!9.60!TCF4;;chr17:38219209..38219230,+!p1@THRA!1.02!125.93!THRA;;chr15:31658288..31658338,+!p4@KLF13!1.02!9.36!KLF13;;chr20:62680984..62680999,-!p1@SOX18!1.01!12.45!SOX18;;chr9:77112225..77112238,+!p2@RORB!1.01!9.23!RORB;;chr2:2328725..2328739,-!p5@MYT1L!1.01!9.23!MYT1L;;chr17:38256822..38256851,-!p1@NR1D1!1.00!71.62!NR1D1;;chr2:74229812..74229867,+!p1@TET3!1.00!23.08!TET3;;chr2:145275982..145276003,-!p7@ZEB2!1.00!9.05!ZEB2;;chr9:126774058..126774081,+!p3@LHX2!0.99!8.87!LHX2;;chr9:124991204..124991246,-!p1@LHX6!0.99!8.81!LHX6;;chr14:29234870..29234930,+!p7@FOXG1!0.99!8.81!FOXG1;;chr11:125034586..125034604,+!p3@PKNOX2!0.99!8.75!PKNOX2;;chr22:41777927..41777971,+!p1@TEF!0.98!73.51!TEF;;chr20:42136308..42136358,+!p2@L3MBTL1!0.98!11.42!L3MBTL;;chr2:2330039..2330072,-!p6@MYT1L!0.98!8.63!MYT1L;;chr11:31832862..31832884,-!p2@PAX6!0.98!8.63!PAX6;;chr19:49140609..49140643,-!p1@DBP!0.97!48.66!DBP;;chr8:22550530..22550609,-!p2@EGR3!0.97!8.32!EGR3;;chr19:13135566..13135577,+!p9@NFIX!0.97!8.32!NFIX;;chr19:30863271..30863338,+!p1@ZNF536!0.97!8.26!ZNF536;;chr21:39870339..39870443,-!p1@ERG!0.97!8.26!ERG;;chr8:93107451..93107468,-!p2@RUNX1T1!0.97!8.26!RUNX1T1;;chr18:53068911..53068935,-!p4@TCF4!0.96!9.17!TCF4;;chr2:2335070..2335098,-!p4@MYT1L!0.96!8.20!MYT1L;;chr4:57522513..57522548,-!p4@HOPX!0.96!8.20!HOPX;;chr2:162273241..162273253,+!p4@TBR1!0.96!8.08!TBR1;;chr5:71803177..71803255,-!p1@ZNF366!0.96!8.08!ZNF366;;chr11:8040739..8040815,+!p4@TUB!0.96!8.08!TUB;;chr19:13135731..13135787,+!p10@NFIX!0.96!8.08!NFIX;;chr1:42384343..42384380,-!p4@HIVEP3!0.96!8.02!HIVEP3;;chr1:61548069..61548102,+!p3@NFIA!0.95!19.62!NFIA;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.95!17.37!ZNF395;;chr19:57183114..57183145,-!p1@ZNF835!0.95!8.99!ZNF835;;chr9:126773880..126773895,+!p2@LHX2!0.95!7.84!LHX2;;chr15:31618903..31618962,+!p3@KLF13!0.94!21.75!KLF13;;chr5:178368186..178368238,+!p1@ZNF454!0.94!14.22!ZNF454;;chr3:33482052..33482116,-!p2@UBP1!0.94!12.03!UBP1;;chr8:80679993..80680011,-!p1@HEY1!0.94!11.48!HEY1;;chr2:162273196..162273210,+!p5@TBR1!0.94!7.78!TBR1;;chr16:51185318..51185348,-!p2@SALL1!0.94!7.78!SALL1;;chr8:30890810..30890880,-!p1@PURG!0.94!7.65!PURG;;chr10:64133910..64133925,+!p5@ZNF365!0.94!7.65!ZNF365;;chr19:47922750..47922795,-!p1@MEIS3!0.93!12.51!MEIS3;;chr1:151032739..151032748,+!p6@MLLT11!0.93!9.48!MLLT11;;chr3:126076242..126076257,-!p1@KLF15!0.93!9.48!KLF15;;chr2:2328299..2328363,-!p3@MYT1L!0.93!7.59!MYT1L;;chrX:102000987..102001029,+!p3@BHLHB9!0.93!7.53!BHLHB9;;chr16:51185172..51185197,-!p1@SALL1!0.93!7.47!SALL1;;chr8:145560111..145560165,-!p2@SCRT1!0.93!7.47!SCRT1;;chr2:145277640..145277771,-!p1@ZEB2!0.92!102.97!ZEB2;;chr1:151032782..151032801,+!p4@MLLT11!0.92!15.01!MLLT11;;chr14:33403648..33403710,+!p3@NPAS3!0.92!7.41!NPAS3;;chr16:79634624..79634642,-!p1@MAF!0.91!28.92!MAF;;chr14:21994337..21994442,-!p1@SALL2!0.91!20.17!SALL2;;chr5:88179195..88179224,-!p3@MEF2C!0.91!11.54!MEF2C;;chr14:33408072..33408114,+!p2@NPAS3!0.91!8.44!NPAS3;;chr13:100634031..100634045,+!p1@ZIC2!0.91!7.17!ZIC2;;chr15:80696410..80696477,+!p6@ARNT2!0.91!7.17!ARNT2;;chr21:34442584..34442587,+!p3@OLIG1!0.91!7.11!OLIG1;;chr5:88179271..88179286,-!p7@MEF2C!0.91!7.05!MEF2C;;chr17:4890919..4890985,-!p1@CAMTA2!0.90!67.49!CAMTA2;;chr5:139487608..139487663,+!p3@PURA!0.90!15.43!PURA;;chr8:60031682..60031710,-!p2@TOX!0.90!11.54!TOX;;chr19:7580549..7580596,+!p3@ZNF358!0.90!6.99!ZNF358;;chr20:3388541..3388575,-!p2@C20orf194!0.89!27.88!C20orf194;;chr17:38219143..38219154,+!p2@THRA!0.89!25.21!THRA;;chr1:164528340..164528379,+!p4@PBX1!0.89!17.44!PBX1;;chr11:47400078..47400106,-!p1@SPI1!0.89!6.80!SPI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| |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.49!308.36!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.35!222.04!PEG3;;chr21:34442439..34442455,+!p1@OLIG1!2.27!183.52!OLIG1;;chr17:53342311..53342400,+!p1@HLF!2.10!141.49!HLF;;chr9:77112244..77112262,+!p1@RORB!2.01!112.63!RORB;;chr22:38380543..38380569,-!p1@SOX10!2.01!100.78!SOX10;;chr9:114287433..114287513,+!p1@ZNF483!1.98!236.98!ZNF483;;chr14:29235961..29236008,+!p1@FOXG1!1.97!92.89!FOXG1;;chr4:57547454..57547469,-!p1@HOPX!1.91!79.46!HOPX;;chr21:34398234..34398250,+!p1@OLIG2!1.88!75.57!OLIG2;;chr2:2334997..2335053,-!p1@MYT1L!1.88!75.21!MYT1L;;chr15:80733570..80733659,+!p2@ARNT2!1.87!72.47!ARNT2;;chr17:37764128..37764258,-!p1@NEUROD2!1.86!71.75!NEUROD2;;chr5:88178983..88179012,-!p1@MEF2C!1.82!474.45!MEF2C;;chr11:61520075..61520136,+!p1@C11orf9!1.82!132.92!C11orf9;;chr2:162272785..162272836,+!p1@TBR1!1.82!64.76!TBR1;;chr2:166326200..166326216,+!p1@CSRNP3!1.80!88.82!CSRNP3;;chr2:95963052..95963106,+!p1@KCNIP3!1.76!55.95!KCNIP3;;chr3:181429704..181429722,+!p1@SOX2!1.74!53.95!SOX2;;chr10:64134120..64134183,+!p1@ZNF365!1.73!63.30!ZNF365;;chr15:80735246..80735321,+!p3@ARNT2!1.72!51.58!ARNT2;;chr4:81118647..81118666,+!p1@PRDM8!1.70!64.76!PRDM8;;chr8:40755333..40755352,-!p1@ZMAT4!1.67!45.99!ZMAT4;;chr2:145277882..145277967,-!p3@ZEB2!1.65!74.05!ZEB2;;chr7:31380292..31380351,-!p1@NEUROD6!1.62!40.28!NEUROD6;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.58!36.94!POU3F3;;chr5:88179017..88179046,-!p2@MEF2C!1.57!141.24!MEF2C;;chr18:53070846..53070902,-!p6@TCF4!1.57!35.84!TCF4;;chrX:25034067..25034088,-!p1@ARX!1.55!34.08!ARX;;chr12:26277817..26277863,-!p2@BHLHE41!1.54!45.38!BHLHE41;;chr14:29234581..29234601,+!p2@FOXG1!1.54!33.35!FOXG1;;chr15:80696703..80696754,+!p1@ARNT2!1.52!42.04!ARNT2;;chr22:41763452..41763466,+!p2@TEF!1.52!31.95!TEF;;chr14:29236269..29236285,+!p3@FOXG1!1.51!31.35!FOXG1;;chr21:34442540..34442560,+!p2@OLIG1!1.51!31.35!OLIG1;;chr3:181429741..181429767,+!p2@SOX2!1.51!31.29!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.50!30.50!NFIX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.49!30.25!SMARCE1;;chr11:125034640..125034655,+!p1@PKNOX2!1.49!30.07!PKNOX2;;chr19:57352109..57352153,-!p2@ZIM2!1.47!28.55!ZIM2;;chr2:60781201..60781258,-!p3@BCL11A!1.47!28.25!BCL11A;;chr1:2461692..2461710,-!p1@HES5!1.45!27.16!HES5;;chr8:53322304..53322340,-!p1@ST18!1.45!27.03!ST18;;chr1:244214577..244214593,+!p1@ZNF238!1.45!26.97!ZNF238;;chr14:33403881..33403924,+!p1@NPAS3!1.44!26.61!NPAS3;;chr19:13135582..13135600,+!p3@NFIX!1.44!26.61!NFIX;;chr11:8102846..8102892,+!p1@TUB!1.43!35.84!TUB;;chr4:57522166..57522260,-!p2@HOPX!1.42!28.92!HOPX;;chr2:95963120..95963136,+!p2@KCNIP3!1.42!25.09!KCNIP3;;chr2:162272889..162272915,+!p2@TBR1!1.40!23.94!TBR1;;chr12:106976774..106976788,+!p1@RFX4!1.37!22.54!RFX4;;chr1:151032860..151032918,+!p1@MLLT11!1.34!238.69!MLLT11;;chr19:46801639..46801699,+!p1@HIF3A!1.34!20.78!HIF3A;;chr16:1031762..1031781,+!p1@SOX8!1.33!20.59!SOX8;;chrX:85969626..85969664,+!p1@DACH2!1.33!20.41!DACH2;;chr3:24536253..24536328,-!p1@THRB!1.31!35.90!THRB;;chr19:38720294..38720348,-!p1@DPF1!1.31!24.06!DPF1;;chr12:54779511..54779577,-!p5@ZNF385A!1.31!19.32!ZNF385A;;chrY:21906594..21906622,-!p1@KDM5D!1.30!18.95!KDM5D;;chr7:63505799..63505904,+!p1@ZNF727!1.29!18.59!ZNF727;;chr11:113930425..113930471,+!p1@ZBTB16!1.27!25.33!ZBTB16;;chr2:166428839..166428859,+!p2@CSRNP3!1.27!17.50!CSRNP3;;chr19:38085768..38085821,+!p1@ZNF540!1.26!25.82!ZNF540;;chr1:214161272..214161322,+!p1@PROX1!1.26!23.87!PROX1;;chr12:106976678..106976708,+!p2@RFX4!1.26!17.37!RFX4;;chr6:15401104..15401166,+!p5@JARID2!1.26!17.07!JARID2;;chr9:126774018..126774055,+!p1@LHX2!1.25!16.77!LHX2;;chr6:19837592..19837621,+!p1@ID4!1.24!99.02!ID4;;chr8:22550982..22550999,-!p1@EGR3!1.24!45.87!EGR3;;chrX:118739835..118739862,-!p1@NKRF!1.24!18.16!NKRF;;chr19:58545454..58545498,+!p1@ZSCAN1!1.24!16.22!ZSCAN1;;chr17:7492684..7492778,-!p2@SOX15!1.23!33.41!SOX15;;chr10:48355030..48355090,+!p1@ZNF488!1.21!19.80!ZNF488;;chr2:73520667..73520683,-!p1@EGR4!1.21!15.19!EGR4;;chr11:125034605..125034636,+!p2@PKNOX2!1.20!14.88!PKNOX2;;chr4:57522598..57522664,-!p3@HOPX!1.19!14.52!HOPX;;chr2:42721205..42721307,+!p4@MTA3!1.19!14.34!MTA3;;chr5:92920256..92920282,+!p7@NR2F1!1.18!17.01!NR2F1;;chr10:64133862..64133884,+!p4@ZNF365!1.18!14.28!ZNF365;;chr2:2335109..2335134,-!p2@MYT1L!1.18!14.15!MYT1L;;chr3:141105705..141105770,+!p4@ZBTB38!1.17!16.71!ZBTB38;;chr12:24102576..24102623,-!p2@SOX5!1.17!13.91!SOX5;;chr10:134599649..134599653,-!p1@NKX6-2!1.16!13.49!NKX6-2;;chr11:31832658..31832681,-!p1@PAX6!1.16!13.30!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.15!47.38!BHLHE41;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.07!SATB2;;chr1:151032922..151032951,+!p2@MLLT11!1.15!21.63!MLLT11;;chr3:21792682..21792720,-!p1@ZNF385D!1.15!13.00!ZNF385D;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.14!12.76!POU3F3;;chr1:8585945..8586056,-!p3@RERE!1.13!41.67!RERE;;chr5:92919375..92919438,+!p6@NR2F1!1.13!13.61!NR2F1;;chr10:119302232..119302265,+!p1@EMX2!1.13!12.58!EMX2;;chr2:162272716..162272753,+!p3@TBR1!1.12!12.21!TBR1;;chrX:118739782..118739829,-!p2@NKRF!1.12!12.21!NKRF;;chr3:24536332..24536358,-!p2@THRB!1.12!12.15!THRB;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.97!IRF8;;chr8:145560371..145560449,-!p1@SCRT1!1.11!11.79!SCRT1;;chr8:53322347..53322378,-!p2@ST18!1.11!11.79!ST18;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.01!NFIX;;chr6:126112039..126112062,+!p8@NCOA7!1.10!13.91!NCOA7;;chr19:46800289..46800327,+!p2@HIF3A!1.10!11.54!HIF3A;;chrY:21906761..21906810,-!p2@KDM5D!1.10!11.48!KDM5D;;chr7:150974206..150974255,-!p1@SMARCD3!1.09!70.29!SMARCD3;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.77!ZNF385A;;chr8:93074803..93074845,-!p1@RUNX1T1!1.07!10.75!RUNX1T1;;chr2:172949484..172949522,+!p1@DLX1!1.07!10.69!DLX1;;chr2:157189180..157189290,-!p1@NR4A2!1.06!55.77!NR4A2;;chr11:8102819..8102845,+!p3@TUB!1.06!13.12!TUB;;chr2:166428861..166428883,+!p3@CSRNP3!1.06!10.45!CSRNP3;;chr7:73038839..73038862,-!p1@MLXIPL!1.06!10.39!MLXIPL;;chr2:60780607..60780624,-!p2@BCL11A!1.04!30.92!BCL11A;;chr5:88179230..88179270,-!p4@MEF2C!1.04!19.44!MEF2C;;chr6:143266185..143266238,-!p2@HIVEP2!1.04!13.91!HIVEP2;;chr17:70117153..70117174,+!p1@SOX9!1.03!101.27!SOX9;;chr2:180726291..180726311,-!p1@ZNF385B!1.03!9.72!ZNF385B;;chr5:138609489..138609542,+!p8@MATR3!1.03!9.66!MATR3;;chr18:53070913..53070933,-!p16@TCF4!1.03!9.60!TCF4;;chr17:38219209..38219230,+!p1@THRA!1.02!125.93!THRA;;chr15:31658288..31658338,+!p4@KLF13!1.02!9.36!KLF13;;chr20:62680984..62680999,-!p1@SOX18!1.01!12.45!SOX18;;chr9:77112225..77112238,+!p2@RORB!1.01!9.23!RORB;;chr2:2328725..2328739,-!p5@MYT1L!1.01!9.23!MYT1L;;chr17:38256822..38256851,-!p1@NR1D1!1.00!71.62!NR1D1;;chr2:74229812..74229867,+!p1@TET3!1.00!23.08!TET3;;chr2:145275982..145276003,-!p7@ZEB2!1.00!9.05!ZEB2;;chr9:126774058..126774081,+!p3@LHX2!0.99!8.87!LHX2;;chr9:124991204..124991246,-!p1@LHX6!0.99!8.81!LHX6;;chr14:29234870..29234930,+!p7@FOXG1!0.99!8.81!FOXG1;;chr11:125034586..125034604,+!p3@PKNOX2!0.99!8.75!PKNOX2;;chr22:41777927..41777971,+!p1@TEF!0.98!73.51!TEF;;chr20:42136308..42136358,+!p2@L3MBTL1!0.98!11.42!L3MBTL;;chr2:2330039..2330072,-!p6@MYT1L!0.98!8.63!MYT1L;;chr11:31832862..31832884,-!p2@PAX6!0.98!8.63!PAX6;;chr19:49140609..49140643,-!p1@DBP!0.97!48.66!DBP;;chr8:22550530..22550609,-!p2@EGR3!0.97!8.32!EGR3;;chr19:13135566..13135577,+!p9@NFIX!0.97!8.32!NFIX;;chr19:30863271..30863338,+!p1@ZNF536!0.97!8.26!ZNF536;;chr21:39870339..39870443,-!p1@ERG!0.97!8.26!ERG;;chr8:93107451..93107468,-!p2@RUNX1T1!0.97!8.26!RUNX1T1;;chr18:53068911..53068935,-!p4@TCF4!0.96!9.17!TCF4;;chr2:2335070..2335098,-!p4@MYT1L!0.96!8.20!MYT1L;;chr4:57522513..57522548,-!p4@HOPX!0.96!8.20!HOPX;;chr2:162273241..162273253,+!p4@TBR1!0.96!8.08!TBR1;;chr5:71803177..71803255,-!p1@ZNF366!0.96!8.08!ZNF366;;chr11:8040739..8040815,+!p4@TUB!0.96!8.08!TUB;;chr19:13135731..13135787,+!p10@NFIX!0.96!8.08!NFIX;;chr1:42384343..42384380,-!p4@HIVEP3!0.96!8.02!HIVEP3;;chr1:61548069..61548102,+!p3@NFIA!0.95!19.62!NFIA;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.95!17.37!ZNF395;;chr19:57183114..57183145,-!p1@ZNF835!0.95!8.99!ZNF835;;chr9:126773880..126773895,+!p2@LHX2!0.95!7.84!LHX2;;chr15:31618903..31618962,+!p3@KLF13!0.94!21.75!KLF13;;chr5:178368186..178368238,+!p1@ZNF454!0.94!14.22!ZNF454;;chr3:33482052..33482116,-!p2@UBP1!0.94!12.03!UBP1;;chr8:80679993..80680011,-!p1@HEY1!0.94!11.48!HEY1;;chr2:162273196..162273210,+!p5@TBR1!0.94!7.78!TBR1;;chr16:51185318..51185348,-!p2@SALL1!0.94!7.78!SALL1;;chr8:30890810..30890880,-!p1@PURG!0.94!7.65!PURG;;chr10:64133910..64133925,+!p5@ZNF365!0.94!7.65!ZNF365;;chr19:47922750..47922795,-!p1@MEIS3!0.93!12.51!MEIS3;;chr1:151032739..151032748,+!p6@MLLT11!0.93!9.48!MLLT11;;chr3:126076242..126076257,-!p1@KLF15!0.93!9.48!KLF15;;chr2:2328299..2328363,-!p3@MYT1L!0.93!7.59!MYT1L;;chrX:102000987..102001029,+!p3@BHLHB9!0.93!7.53!BHLHB9;;chr16:51185172..51185197,-!p1@SALL1!0.93!7.47!SALL1;;chr8:145560111..145560165,-!p2@SCRT1!0.93!7.47!SCRT1;;chr2:145277640..145277771,-!p1@ZEB2!0.92!102.97!ZEB2;;chr1:151032782..151032801,+!p4@MLLT11!0.92!15.01!MLLT11;;chr14:33403648..33403710,+!p3@NPAS3!0.92!7.41!NPAS3;;chr16:79634624..79634642,-!p1@MAF!0.91!28.92!MAF;;chr14:21994337..21994442,-!p1@SALL2!0.91!20.17!SALL2;;chr5:88179195..88179224,-!p3@MEF2C!0.91!11.54!MEF2C;;chr14:33408072..33408114,+!p2@NPAS3!0.91!8.44!NPAS3;;chr13:100634031..100634045,+!p1@ZIC2!0.91!7.17!ZIC2;;chr15:80696410..80696477,+!p6@ARNT2!0.91!7.17!ARNT2;;chr21:34442584..34442587,+!p3@OLIG1!0.91!7.11!OLIG1;;chr5:88179271..88179286,-!p7@MEF2C!0.91!7.05!MEF2C;;chr17:4890919..4890985,-!p1@CAMTA2!0.90!67.49!CAMTA2;;chr5:139487608..139487663,+!p3@PURA!0.90!15.43!PURA;;chr8:60031682..60031710,-!p2@TOX!0.90!11.54!TOX;;chr19:7580549..7580596,+!p3@ZNF358!0.90!6.99!ZNF358;;chr20:3388541..3388575,-!p2@C20orf194!0.89!27.88!C20orf194;;chr17:38219143..38219154,+!p2@THRA!0.89!25.21!THRA;;chr1:164528340..164528379,+!p4@PBX1!0.89!17.44!PBX1;;chr11:47400078..47400106,-!p1@SPI1!0.89!6.80!SPI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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10039-101F3 | |id=FF:10039-101F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010039 | ||
|is_obsolete= | |||
|library_id=CNhs10646 | |||
|library_id_phase_based=2:CNhs10646 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10039 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10039 | |||
|name=insula, adult, pool1 | |name=insula, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10646,LSID658,release008,COMPLETED | |profile_hcage=CNhs10646,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636568 | |rna_catalog_number=Cat:636568 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 100: | ||
|sample_tissue=insula | |sample_tissue=insula | ||
|top_motifs=REST:4.55264096162;NHLH1,2:4.45367622929;EGR1..3:4.44347393155;AHR_ARNT_ARNT2:4.17517135414;PRRX1,2:4.05057661225;MYFfamily:3.83021369214;ZFP161:3.76554430806;MTE{core}:3.70157521518;ATF2:3.67301252527;MED-1{core}:3.65727115447;ZBTB6:3.55660337704;PAX5:3.54727656467;RREB1:3.47861349929;RFX1:3.35514406066;TFAP2B:3.35508220906;CUX2:3.23190364929;MTF1:3.20273484515;GTF2I:3.01275068352;HIC1:3.00469515651;MZF1:2.94160733443;SMAD1..7,9:2.79602159473;DBP:2.76582130862;HOXA9_MEIS1:2.72703696336;PRDM1:2.59588344649;BREu{core}:2.59115432333;OCT4_SOX2{dimer}:2.48412377263;TGIF1:2.4828412589;POU5F1:2.47567574539;SOX2:2.46135937351;NKX2-3_NKX2-5:2.42482870529;NANOG:2.41389372334;PATZ1:2.35609013217;SOX5:2.33610935443;MAZ:2.30567697419;JUN:2.27872357201;LMO2:2.27797384297;POU6F1:2.25119962198;RFX2..5_RFXANK_RFXAP:2.23979648603;SOX{8,9,10}:2.2339570541;FOXM1:2.23390352391;GFI1B:2.19589140236;NKX3-2:2.19563369789;MAFB:2.10284138789;GCM1,2:1.97127501997;TFDP1:1.89967126368;NRF1:1.89602905949;PAX6:1.85823895188;NFIX:1.80227971107;SOX17:1.77325237453;EBF1:1.7203339069;LEF1_TCF7_TCF7L1,2:1.69162502121;MYOD1:1.56630501323;ARID5B:1.56393145531;POU3F1..4:1.55143301756;HMGA1,2:1.51368232847;FOX{F1,F2,J1}:1.48189783154;GTF2A1,2:1.46525661493;RORA:1.42477667797;EP300:1.41539861079;RBPJ:1.41275178817;ZNF238:1.38618932004;ESRRA:1.37352791397;CDC5L:1.37293483261;HAND1,2:1.35543355057;NFIL3:1.33754612472;GATA4:1.33739818969;ADNP_IRX_SIX_ZHX:1.32461584163;HBP1_HMGB_SSRP1_UBTF:1.31340382399;SP1:1.30221849189;KLF4:1.29941649347;HOX{A4,D4}:1.2549611617;ZNF423:1.20309412726;XBP1:1.11837224814;SREBF1,2:1.09670318212;T:1.06365268102;MEF2{A,B,C,D}:1.05827707365;CREB1:0.98250526831;ZNF143:0.944252319915;TBX4,5:0.891639350186;TFAP2{A,C}:0.841633309653;YY1:0.840051797347;HMX1:0.838942002396;FOXN1:0.823604222471;ZEB1:0.787712735269;CRX:0.75615139821;TLX2:0.713650050244;SPZ1:0.687338356182;PBX1:0.658340513878;GFI1:0.627197078644;FOXQ1:0.607889999132;FOXP1:0.607511922718;TLX1..3_NFIC{dimer}:0.600031369107;ZIC1..3:0.583359310448;FOXP3:0.575740347158;ALX1:0.566997699386;XCPE1{core}:0.552654509135;bHLH_family:0.53853258253;STAT1,3:0.511164458235;ATF5_CREB3:0.478801359823;ATF4:0.414416494896;GZF1:0.413994587758;NKX6-1,2:0.372067473095;FOX{D1,D2}:0.363460131389;ZNF384:0.360406096812;BPTF:0.353183511846;PAX3,7:0.266338669077;MYBL2:0.234173563489;NANOG{mouse}:0.231444254727;POU1F1:0.176150153239;PAX2:0.167334347392;VSX1,2:0.144030673639;ONECUT1,2:0.118206205912;NR3C1:0.0862384340001;AR:0.0764920053552;LHX3,4:0.0254404106532;NFY{A,B,C}:0.0149099261113;IKZF1:0.0037735038623;IRF7:-0.00781408510147;FOX{I1,J2}:-0.00951492480427;TEF:-0.0351203645297;ZNF148:-0.0376829261967;PAX1,9:-0.049387151959;NFE2L2:-0.0511645473513;TFAP4:-0.0814729365852;SNAI1..3:-0.128613309795;FOXA2:-0.192166424481;PAX4:-0.207430533373;TOPORS:-0.276013537126;IKZF2:-0.292038152452;PDX1:-0.30559844401;TAL1_TCF{3,4,12}:-0.336464107794;NFATC1..3:-0.345565942753;GATA6:-0.390467927881;HOX{A6,A7,B6,B7}:-0.401356557001;NFE2:-0.422407390211;NR5A1,2:-0.451474268344;SPI1:-0.523626957764;NFE2L1:-0.529008012722;HSF1,2:-0.529964004652;FOXD3:-0.551920299372;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.602752721246;IRF1,2:-0.627440882787;DMAP1_NCOR{1,2}_SMARC:-0.630039647191;CEBPA,B_DDIT3:-0.632408365865;SPIB:-0.639850864058;GLI1..3:-0.651771169482;NR1H4:-0.665726817595;TFCP2:-0.669439476622;UFEwm:-0.680564800647;FOXL1:-0.697579700743;ETS1,2:-0.715026316179;ATF6:-0.718207895291;FOSL2:-0.739769622503;ESR1:-0.74041527486;STAT2,4,6:-0.765274887831;PAX8:-0.774052074187;FOXO1,3,4:-0.828313233967;HNF1A:-0.860444714299;TP53:-0.870951806603;BACH2:-0.913330090696;FOS_FOS{B,L1}_JUN{B,D}:-0.949910331352;TEAD1:-0.966207688054;ELK1,4_GABP{A,B1}:-0.976628746412;HIF1A:-1.01181744774;RUNX1..3:-1.10942947207;TBP:-1.12658283369;HNF4A_NR2F1,2:-1.1455758597;SRF:-1.16234201581;PPARG:-1.21476706433;NFKB1_REL_RELA:-1.23036062838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.29191703811;HLF:-1.31457652256;E2F1..5:-1.33446161638;POU2F1..3:-1.37314176728;MYB:-1.41805232556;NKX3-1:-1.42397023074;RXR{A,B,G}:-1.46439303956;STAT5{A,B}:-1.6235061593;PITX1..3:-1.63212067295;ELF1,2,4:-1.6440112727;RXRA_VDR{dimer}:-1.6666062477;HES1:-1.69578600154;ZBTB16:-1.69757669796;NKX2-2,8:-1.70155883096;ALX4:-1.91442399913;EN1,2:-1.93447129406;EVI1:-2.21497844881;HOX{A5,B5}:-2.3352263681;NKX2-1,4:-2.3652813881;AIRE:-2.54107337946;CDX1,2,4:-2.75207925876;NR6A1:-3.4036621706 | |top_motifs=REST:4.55264096162;NHLH1,2:4.45367622929;EGR1..3:4.44347393155;AHR_ARNT_ARNT2:4.17517135414;PRRX1,2:4.05057661225;MYFfamily:3.83021369214;ZFP161:3.76554430806;MTE{core}:3.70157521518;ATF2:3.67301252527;MED-1{core}:3.65727115447;ZBTB6:3.55660337704;PAX5:3.54727656467;RREB1:3.47861349929;RFX1:3.35514406066;TFAP2B:3.35508220906;CUX2:3.23190364929;MTF1:3.20273484515;GTF2I:3.01275068352;HIC1:3.00469515651;MZF1:2.94160733443;SMAD1..7,9:2.79602159473;DBP:2.76582130862;HOXA9_MEIS1:2.72703696336;PRDM1:2.59588344649;BREu{core}:2.59115432333;OCT4_SOX2{dimer}:2.48412377263;TGIF1:2.4828412589;POU5F1:2.47567574539;SOX2:2.46135937351;NKX2-3_NKX2-5:2.42482870529;NANOG:2.41389372334;PATZ1:2.35609013217;SOX5:2.33610935443;MAZ:2.30567697419;JUN:2.27872357201;LMO2:2.27797384297;POU6F1:2.25119962198;RFX2..5_RFXANK_RFXAP:2.23979648603;SOX{8,9,10}:2.2339570541;FOXM1:2.23390352391;GFI1B:2.19589140236;NKX3-2:2.19563369789;MAFB:2.10284138789;GCM1,2:1.97127501997;TFDP1:1.89967126368;NRF1:1.89602905949;PAX6:1.85823895188;NFIX:1.80227971107;SOX17:1.77325237453;EBF1:1.7203339069;LEF1_TCF7_TCF7L1,2:1.69162502121;MYOD1:1.56630501323;ARID5B:1.56393145531;POU3F1..4:1.55143301756;HMGA1,2:1.51368232847;FOX{F1,F2,J1}:1.48189783154;GTF2A1,2:1.46525661493;RORA:1.42477667797;EP300:1.41539861079;RBPJ:1.41275178817;ZNF238:1.38618932004;ESRRA:1.37352791397;CDC5L:1.37293483261;HAND1,2:1.35543355057;NFIL3:1.33754612472;GATA4:1.33739818969;ADNP_IRX_SIX_ZHX:1.32461584163;HBP1_HMGB_SSRP1_UBTF:1.31340382399;SP1:1.30221849189;KLF4:1.29941649347;HOX{A4,D4}:1.2549611617;ZNF423:1.20309412726;XBP1:1.11837224814;SREBF1,2:1.09670318212;T:1.06365268102;MEF2{A,B,C,D}:1.05827707365;CREB1:0.98250526831;ZNF143:0.944252319915;TBX4,5:0.891639350186;TFAP2{A,C}:0.841633309653;YY1:0.840051797347;HMX1:0.838942002396;FOXN1:0.823604222471;ZEB1:0.787712735269;CRX:0.75615139821;TLX2:0.713650050244;SPZ1:0.687338356182;PBX1:0.658340513878;GFI1:0.627197078644;FOXQ1:0.607889999132;FOXP1:0.607511922718;TLX1..3_NFIC{dimer}:0.600031369107;ZIC1..3:0.583359310448;FOXP3:0.575740347158;ALX1:0.566997699386;XCPE1{core}:0.552654509135;bHLH_family:0.53853258253;STAT1,3:0.511164458235;ATF5_CREB3:0.478801359823;ATF4:0.414416494896;GZF1:0.413994587758;NKX6-1,2:0.372067473095;FOX{D1,D2}:0.363460131389;ZNF384:0.360406096812;BPTF:0.353183511846;PAX3,7:0.266338669077;MYBL2:0.234173563489;NANOG{mouse}:0.231444254727;POU1F1:0.176150153239;PAX2:0.167334347392;VSX1,2:0.144030673639;ONECUT1,2:0.118206205912;NR3C1:0.0862384340001;AR:0.0764920053552;LHX3,4:0.0254404106532;NFY{A,B,C}:0.0149099261113;IKZF1:0.0037735038623;IRF7:-0.00781408510147;FOX{I1,J2}:-0.00951492480427;TEF:-0.0351203645297;ZNF148:-0.0376829261967;PAX1,9:-0.049387151959;NFE2L2:-0.0511645473513;TFAP4:-0.0814729365852;SNAI1..3:-0.128613309795;FOXA2:-0.192166424481;PAX4:-0.207430533373;TOPORS:-0.276013537126;IKZF2:-0.292038152452;PDX1:-0.30559844401;TAL1_TCF{3,4,12}:-0.336464107794;NFATC1..3:-0.345565942753;GATA6:-0.390467927881;HOX{A6,A7,B6,B7}:-0.401356557001;NFE2:-0.422407390211;NR5A1,2:-0.451474268344;SPI1:-0.523626957764;NFE2L1:-0.529008012722;HSF1,2:-0.529964004652;FOXD3:-0.551920299372;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.602752721246;IRF1,2:-0.627440882787;DMAP1_NCOR{1,2}_SMARC:-0.630039647191;CEBPA,B_DDIT3:-0.632408365865;SPIB:-0.639850864058;GLI1..3:-0.651771169482;NR1H4:-0.665726817595;TFCP2:-0.669439476622;UFEwm:-0.680564800647;FOXL1:-0.697579700743;ETS1,2:-0.715026316179;ATF6:-0.718207895291;FOSL2:-0.739769622503;ESR1:-0.74041527486;STAT2,4,6:-0.765274887831;PAX8:-0.774052074187;FOXO1,3,4:-0.828313233967;HNF1A:-0.860444714299;TP53:-0.870951806603;BACH2:-0.913330090696;FOS_FOS{B,L1}_JUN{B,D}:-0.949910331352;TEAD1:-0.966207688054;ELK1,4_GABP{A,B1}:-0.976628746412;HIF1A:-1.01181744774;RUNX1..3:-1.10942947207;TBP:-1.12658283369;HNF4A_NR2F1,2:-1.1455758597;SRF:-1.16234201581;PPARG:-1.21476706433;NFKB1_REL_RELA:-1.23036062838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.29191703811;HLF:-1.31457652256;E2F1..5:-1.33446161638;POU2F1..3:-1.37314176728;MYB:-1.41805232556;NKX3-1:-1.42397023074;RXR{A,B,G}:-1.46439303956;STAT5{A,B}:-1.6235061593;PITX1..3:-1.63212067295;ELF1,2,4:-1.6440112727;RXRA_VDR{dimer}:-1.6666062477;HES1:-1.69578600154;ZBTB16:-1.69757669796;NKX2-2,8:-1.70155883096;ALX4:-1.91442399913;EN1,2:-1.93447129406;EVI1:-2.21497844881;HOX{A5,B5}:-2.3352263681;NKX2-1,4:-2.3652813881;AIRE:-2.54107337946;CDX1,2,4:-2.75207925876;NR6A1:-3.4036621706 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10039-101F3;search_select_hide=table117:FF:10039-101F3 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | insula, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10646 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10646
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10646
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0313 |
| 10 | 10 | 0.0267 |
| 100 | 100 | 0.268 |
| 101 | 101 | 0.77 |
| 102 | 102 | 0.746 |
| 103 | 103 | 0.176 |
| 104 | 104 | 0.15 |
| 105 | 105 | 0.379 |
| 106 | 106 | 0.0516 |
| 107 | 107 | 0.119 |
| 108 | 108 | 0.849 |
| 109 | 109 | 0.00851 |
| 11 | 11 | 0.0142 |
| 110 | 110 | 0.0453 |
| 111 | 111 | 0.0648 |
| 112 | 112 | 0.282 |
| 113 | 113 | 0.691 |
| 114 | 114 | 0.0734 |
| 115 | 115 | 0.835 |
| 116 | 116 | 0.175 |
| 117 | 117 | 0.0095 |
| 118 | 118 | 0.093 |
| 119 | 119 | 0.0848 |
| 12 | 12 | 0.83 |
| 120 | 120 | 0.135 |
| 121 | 121 | 0.74 |
| 122 | 122 | 0.535 |
| 123 | 123 | 0.628 |
| 124 | 124 | 0.0537 |
| 125 | 125 | 0.15 |
| 126 | 126 | 0.0307 |
| 127 | 127 | 0.457 |
| 128 | 128 | 0.16 |
| 129 | 129 | 0.496 |
| 13 | 13 | 0.00151 |
| 130 | 130 | 0.524 |
| 131 | 131 | 0.0895 |
| 132 | 132 | 0.734 |
| 133 | 133 | 0.00281 |
| 134 | 134 | 0.259 |
| 135 | 135 | 0.231 |
| 136 | 136 | 0.00884 |
| 137 | 137 | 0.78 |
| 138 | 138 | 0.895 |
| 139 | 139 | 0.061 |
| 14 | 14 | 0.89 |
| 140 | 140 | 0.171 |
| 141 | 141 | 0.227 |
| 142 | 142 | 0.892 |
| 143 | 143 | 0.0126 |
| 144 | 144 | 0.837 |
| 145 | 145 | 0.087 |
| 146 | 146 | 0.63 |
| 147 | 147 | 0.833 |
| 148 | 148 | 0.107 |
| 149 | 149 | 0.3 |
| 15 | 15 | 0.0725 |
| 150 | 150 | 0.168 |
| 151 | 151 | 0.613 |
| 152 | 152 | 0.126 |
| 153 | 153 | 0.8 |
| 154 | 154 | 0.591 |
| 155 | 155 | 0.455 |
| 156 | 156 | 0.387 |
| 157 | 157 | 0.447 |
| 158 | 158 | 0.848 |
| 159 | 159 | 0.0801 |
| 16 | 16 | 0.0719 |
| 160 | 160 | 0.192 |
| 161 | 161 | 0.17 |
| 162 | 162 | 0.947 |
| 163 | 163 | 0.861 |
| 164 | 164 | 0.0182 |
| 165 | 165 | 0.0248 |
| 166 | 166 | 0.884 |
| 167 | 167 | 0.289 |
| 168 | 168 | 0.582 |
| 169 | 169 | 0.00726 |
| 17 | 17 | 0.155 |
| 18 | 18 | 0.2 |
| 19 | 19 | 0.191 |
| 2 | 2 | 0.972 |
| 20 | 20 | 0.0983 |
| 21 | 21 | 0.088 |
| 22 | 22 | 0.237 |
| 23 | 23 | 0.416 |
| 24 | 24 | 0.108 |
| 25 | 25 | 0.5 |
| 26 | 26 | 1.59508e-4 |
| 27 | 27 | 0.921 |
| 28 | 28 | 0.658 |
| 29 | 29 | 0.0111 |
| 3 | 3 | 0.0249 |
| 30 | 30 | 0.627 |
| 31 | 31 | 0.85 |
| 32 | 32 | 0.0298 |
| 33 | 33 | 0.0747 |
| 34 | 34 | 0.794 |
| 35 | 35 | 0.462 |
| 36 | 36 | 0.098 |
| 37 | 37 | 0.0353 |
| 38 | 38 | 0.307 |
| 39 | 39 | 0.24 |
| 4 | 4 | 0.978 |
| 40 | 40 | 0.0492 |
| 41 | 41 | 0.429 |
| 42 | 42 | 0.169 |
| 43 | 43 | 0.106 |
| 44 | 44 | 0.066 |
| 45 | 45 | 0.801 |
| 46 | 46 | 0.0581 |
| 47 | 47 | 0.0535 |
| 48 | 48 | 0.0479 |
| 49 | 49 | 0.125 |
| 5 | 5 | 0.43 |
| 50 | 50 | 0.355 |
| 51 | 51 | 0.513 |
| 52 | 52 | 0.625 |
| 53 | 53 | 0.905 |
| 54 | 54 | 0.461 |
| 55 | 55 | 0.396 |
| 56 | 56 | 0.47 |
| 57 | 57 | 0.237 |
| 58 | 58 | 0.303 |
| 59 | 59 | 0.133 |
| 6 | 6 | 0.547 |
| 60 | 60 | 0.0718 |
| 61 | 61 | 0.0591 |
| 62 | 62 | 0.175 |
| 63 | 63 | 0.148 |
| 64 | 64 | 0.2 |
| 65 | 65 | 0.277 |
| 66 | 66 | 0.301 |
| 67 | 67 | 0.327 |
| 68 | 68 | 0.303 |
| 69 | 69 | 0.368 |
| 7 | 7 | 0.0586 |
| 70 | 70 | 0.0151 |
| 71 | 71 | 0.0109 |
| 72 | 72 | 0.471 |
| 73 | 73 | 0.0432 |
| 74 | 74 | 0.607 |
| 75 | 75 | 0.0294 |
| 76 | 76 | 0.366 |
| 77 | 77 | 0.208 |
| 78 | 78 | 0.00309 |
| 79 | 79 | 0.176 |
| 8 | 8 | 0.0538 |
| 80 | 80 | 0.922 |
| 81 | 81 | 0.55 |
| 82 | 82 | 0.477 |
| 83 | 83 | 0.166 |
| 84 | 84 | 0.743 |
| 85 | 85 | 0.198 |
| 86 | 86 | 0.208 |
| 87 | 87 | 0.00614 |
| 88 | 88 | 0.851 |
| 89 | 89 | 0.54 |
| 9 | 9 | 0.54 |
| 90 | 90 | 0.0277 |
| 91 | 91 | 0.422 |
| 92 | 92 | 0.443 |
| 93 | 93 | 0.61 |
| 94 | 94 | 0.0685 |
| 95 | 95 | 0.0261 |
| 96 | 96 | 0.955 |
| 97 | 97 | 0.798 |
| 98 | 98 | 0.213 |
| 99 | 99 | 0.711 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10646
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010039 human insula - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002022 (insula)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010039 (human insula - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
