FF:10039-101F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005167 | ||
|accession_numbers=CAGE;DRX008669;DRR009541;DRZ000966;DRZ002351;DRZ012316;DRZ013701 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002022,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010039 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/insula%252c%2520adult%252c%2520pool1.CNhs10646.10039-101F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10039-101F3 | |id=FF:10039-101F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010039 | ||
|is_obsolete= | |||
|library_id=CNhs10646 | |||
|library_id_phase_based=2:CNhs10646 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10039 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10039 | |||
|name=insula, adult, pool1 | |name=insula, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10646,LSID658,release008,COMPLETED | |profile_hcage=CNhs10646,LSID658,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636568 | |rna_catalog_number=Cat:636568 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.95295581889969e-305!GO:0005737;cytoplasm;3.58339982028746e-151!GO:0044444;cytoplasmic part;3.76451174088257e-98!GO:0043226;organelle;1.00555953896419e-84!GO:0043229;intracellular organelle;2.90502860839351e-84!GO:0043227;membrane-bound organelle;5.2225642583565e-79!GO:0043231;intracellular membrane-bound organelle;7.17486520016062e-79!GO:0005515;protein binding;2.38633815776419e-61!GO:0044422;organelle part;4.73342728582605e-59!GO:0044446;intracellular organelle part;4.09587941480466e-58!GO:0032991;macromolecular complex;5.66592084365086e-54!GO:0016043;cellular component organization and biogenesis;1.85764090879103e-43!GO:0005739;mitochondrion;3.46494118849291e-39!GO:0033036;macromolecule localization;6.99099000627688e-39!GO:0015031;protein transport;1.15551330152784e-38!GO:0031090;organelle membrane;3.36754865926136e-38!GO:0008104;protein localization;1.37032334927637e-35!GO:0045184;establishment of protein localization;7.48553522870075e-35!GO:0003723;RNA binding;1.46097307044708e-34!GO:0030529;ribonucleoprotein complex;1.02016707208445e-33!GO:0043234;protein complex;2.69041557184812e-31!GO:0046907;intracellular transport;6.47362344035044e-30!GO:0044429;mitochondrial part;1.43869731331819e-29!GO:0051649;establishment of cellular localization;2.33972023463389e-28!GO:0051641;cellular localization;4.31018647769999e-28!GO:0043233;organelle lumen;2.29668196906996e-27!GO:0031974;membrane-enclosed lumen;2.29668196906996e-27!GO:0016192;vesicle-mediated transport;2.53579884863618e-27!GO:0044428;nuclear part;8.58472275314961e-25!GO:0031975;envelope;1.08492341302284e-24!GO:0031967;organelle envelope;1.56842483354718e-24!GO:0019538;protein metabolic process;1.2147820559202e-23!GO:0006886;intracellular protein transport;5.69439946422157e-22!GO:0016071;mRNA metabolic process;2.74692244627999e-21!GO:0005794;Golgi apparatus;3.53019319712403e-21!GO:0005829;cytosol;1.28009259511837e-20!GO:0044260;cellular macromolecule metabolic process;1.96263159441103e-20!GO:0006119;oxidative phosphorylation;1.99294935081767e-20!GO:0044238;primary metabolic process;2.21702109193492e-20!GO:0005740;mitochondrial envelope;2.69343513100629e-20!GO:0006396;RNA processing;3.76611819841133e-20!GO:0031966;mitochondrial membrane;5.12350864012238e-20!GO:0044267;cellular protein metabolic process;7.97658548102548e-20!GO:0031982;vesicle;1.58246458624931e-19!GO:0005840;ribosome;2.39620004430668e-19!GO:0031988;membrane-bound vesicle;4.83591417162916e-19!GO:0008380;RNA splicing;6.39574334813208e-19!GO:0031410;cytoplasmic vesicle;8.10804736809054e-19!GO:0044237;cellular metabolic process;1.70247413876281e-18!GO:0016023;cytoplasmic membrane-bound vesicle;2.3362179269286e-18!GO:0043170;macromolecule metabolic process;5.45803959535087e-18!GO:0006397;mRNA processing;6.71689918885398e-18!GO:0019866;organelle inner membrane;1.56527450869382e-17!GO:0006996;organelle organization and biogenesis;2.01108405410431e-17!GO:0000166;nucleotide binding;2.16408233499953e-17!GO:0005743;mitochondrial inner membrane;3.26103345873022e-17!GO:0006512;ubiquitin cycle;3.12354520473844e-16!GO:0065003;macromolecular complex assembly;1.20741375319737e-15!GO:0003735;structural constituent of ribosome;2.79709742589813e-15!GO:0043412;biopolymer modification;2.97262128773728e-15!GO:0031981;nuclear lumen;4.6163846424187e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.85214972463872e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;6.52838665154604e-15!GO:0006412;translation;7.42954759803505e-15!GO:0016462;pyrophosphatase activity;7.90719072581895e-15!GO:0012505;endomembrane system;1.14917264217634e-14!GO:0043687;post-translational protein modification;1.30464678043043e-14!GO:0006464;protein modification process;1.35678309894745e-14!GO:0005634;nucleus;1.4194468703452e-14!GO:0045045;secretory pathway;1.83922657574768e-14!GO:0044455;mitochondrial membrane part;2.04363929623272e-14!GO:0017111;nucleoside-triphosphatase activity;3.50477924230465e-14!GO:0009058;biosynthetic process;4.17619532294643e-14!GO:0005746;mitochondrial respiratory chain;4.251581086949e-14!GO:0016874;ligase activity;4.72660942414186e-14!GO:0032553;ribonucleotide binding;6.45108240970637e-14!GO:0032555;purine ribonucleotide binding;6.45108240970637e-14!GO:0007264;small GTPase mediated signal transduction;7.53962396487608e-14!GO:0022607;cellular component assembly;7.58688249190876e-14!GO:0006810;transport;2.40473409106056e-13!GO:0048770;pigment granule;6.02183991035454e-13!GO:0042470;melanosome;6.02183991035454e-13!GO:0017076;purine nucleotide binding;7.05861740296427e-13!GO:0005681;spliceosome;7.30604095771445e-13!GO:0050136;NADH dehydrogenase (quinone) activity;7.40969518504791e-13!GO:0003954;NADH dehydrogenase activity;7.40969518504791e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.40969518504791e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.96689962043802e-13!GO:0030135;coated vesicle;1.09812101176793e-12!GO:0033279;ribosomal subunit;1.78248705923601e-12!GO:0007399;nervous system development;3.23618981505766e-12!GO:0048193;Golgi vesicle transport;3.72007574304635e-12!GO:0031980;mitochondrial lumen;1.71565381897981e-11!GO:0005759;mitochondrial matrix;1.71565381897981e-11!GO:0030695;GTPase regulator activity;2.20300374271563e-11!GO:0044249;cellular biosynthetic process;2.50463658060918e-11!GO:0043005;neuron projection;3.26037830404056e-11!GO:0009059;macromolecule biosynthetic process;3.26037830404056e-11!GO:0006457;protein folding;3.34866243547055e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.55404241303832e-11!GO:0042773;ATP synthesis coupled electron transport;3.55404241303832e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.60197301678358e-11!GO:0045271;respiratory chain complex I;3.60197301678358e-11!GO:0005747;mitochondrial respiratory chain complex I;3.60197301678358e-11!GO:0008092;cytoskeletal protein binding;4.5336687511513e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.07511156324368e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.72662345514998e-11!GO:0019829;cation-transporting ATPase activity;1.09449983394011e-10!GO:0043283;biopolymer metabolic process;1.17672706220869e-10!GO:0044431;Golgi apparatus part;1.31268238373596e-10!GO:0051234;establishment of localization;1.31441614188195e-10!GO:0006793;phosphorus metabolic process;1.34015594923513e-10!GO:0006796;phosphate metabolic process;1.34015594923513e-10!GO:0051179;localization;1.65029127758879e-10!GO:0005083;small GTPase regulator activity;1.81121940125507e-10!GO:0003924;GTPase activity;3.21998296719732e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.09500458616939e-10!GO:0005654;nucleoplasm;8.57843739601525e-10!GO:0005768;endosome;9.41146660136277e-10!GO:0022618;protein-RNA complex assembly;1.03589603235109e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;1.12433156327386e-09!GO:0032940;secretion by cell;1.12433156327386e-09!GO:0006511;ubiquitin-dependent protein catabolic process;1.50831574284809e-09!GO:0044445;cytosolic part;1.74991217202711e-09!GO:0019941;modification-dependent protein catabolic process;1.8532676425152e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.8532676425152e-09!GO:0008639;small protein conjugating enzyme activity;2.31689596496321e-09!GO:0008135;translation factor activity, nucleic acid binding;2.44607271991005e-09!GO:0044257;cellular protein catabolic process;2.57874531133611e-09!GO:0051082;unfolded protein binding;2.62957899132159e-09!GO:0004842;ubiquitin-protein ligase activity;3.79542056884809e-09!GO:0005525;GTP binding;3.94971174923823e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.12317058533367e-09!GO:0030136;clathrin-coated vesicle;4.34541571766702e-09!GO:0019787;small conjugating protein ligase activity;4.52631287284844e-09!GO:0006605;protein targeting;4.82951968366865e-09!GO:0008565;protein transporter activity;5.95213208101265e-09!GO:0044451;nucleoplasm part;7.31922616737739e-09!GO:0005783;endoplasmic reticulum;8.41710963905232e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.97913062806633e-09!GO:0044265;cellular macromolecule catabolic process;1.17493886706578e-08!GO:0007010;cytoskeleton organization and biogenesis;1.2363263424789e-08!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.2884065718242e-08!GO:0000502;proteasome complex (sensu Eukaryota);1.42461259730766e-08!GO:0015986;ATP synthesis coupled proton transport;1.5398372257048e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.5398372257048e-08!GO:0051186;cofactor metabolic process;2.88311645496559e-08!GO:0032559;adenyl ribonucleotide binding;3.17691541450441e-08!GO:0008134;transcription factor binding;3.3494192424289e-08!GO:0000139;Golgi membrane;3.38834156934165e-08!GO:0016044;membrane organization and biogenesis;4.99403705482574e-08!GO:0016881;acid-amino acid ligase activity;5.99273034032111e-08!GO:0043228;non-membrane-bound organelle;6.64059470326719e-08!GO:0043232;intracellular non-membrane-bound organelle;6.64059470326719e-08!GO:0019226;transmission of nerve impulse;6.64059470326719e-08!GO:0015935;small ribosomal subunit;8.6236603506394e-08!GO:0032561;guanyl ribonucleotide binding;9.33508695866398e-08!GO:0019001;guanyl nucleotide binding;9.33508695866398e-08!GO:0005524;ATP binding;1.08504600115231e-07!GO:0006461;protein complex assembly;1.29247125985217e-07!GO:0030163;protein catabolic process;1.30445423192644e-07!GO:0043285;biopolymer catabolic process;1.48497655206177e-07!GO:0016310;phosphorylation;1.71233725876202e-07!GO:0044248;cellular catabolic process;1.71438697826628e-07!GO:0019717;synaptosome;1.94926203386609e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.15777314184667e-07!GO:0046034;ATP metabolic process;2.23749178749329e-07!GO:0009060;aerobic respiration;2.39384989726733e-07!GO:0030554;adenyl nucleotide binding;2.42911592605169e-07!GO:0007242;intracellular signaling cascade;2.70837137766721e-07!GO:0030425;dendrite;3.45334461655344e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.18981165798283e-07!GO:0045333;cellular respiration;4.28262847430507e-07!GO:0015631;tubulin binding;5.22272591513633e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.62862087058814e-07!GO:0048475;coated membrane;6.78996482612511e-07!GO:0030117;membrane coat;6.78996482612511e-07!GO:0009141;nucleoside triphosphate metabolic process;7.52219175393872e-07!GO:0044440;endosomal part;7.52219175393872e-07!GO:0010008;endosome membrane;7.52219175393872e-07!GO:0006754;ATP biosynthetic process;8.41419888935239e-07!GO:0006753;nucleoside phosphate metabolic process;8.41419888935239e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.01931490838659e-07!GO:0009144;purine nucleoside triphosphate metabolic process;9.01931490838659e-07!GO:0048471;perinuclear region of cytoplasm;9.84711508406802e-07!GO:0003743;translation initiation factor activity;9.99823497513545e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.01077870543191e-06!GO:0006163;purine nucleotide metabolic process;1.07312712386618e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.10907682618041e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.13499944343208e-06!GO:0009057;macromolecule catabolic process;1.22229728974164e-06!GO:0006446;regulation of translational initiation;1.45073924289402e-06!GO:0000398;nuclear mRNA splicing, via spliceosome;1.45073924289402e-06!GO:0000375;RNA splicing, via transesterification reactions;1.45073924289402e-06!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.45073924289402e-06!GO:0008287;protein serine/threonine phosphatase complex;1.45073924289402e-06!GO:0009150;purine ribonucleotide metabolic process;1.45478692135859e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.46757455056736e-06!GO:0006413;translational initiation;1.48716273207693e-06!GO:0007265;Ras protein signal transduction;1.62290537760949e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.7624176290291e-06!GO:0030029;actin filament-based process;1.77850604094364e-06!GO:0051056;regulation of small GTPase mediated signal transduction;1.83279969560354e-06!GO:0006913;nucleocytoplasmic transport;2.18222779862475e-06!GO:0016604;nuclear body;2.24855363822106e-06!GO:0006164;purine nucleotide biosynthetic process;2.44321017453397e-06!GO:0006732;coenzyme metabolic process;2.63522775447758e-06!GO:0016607;nuclear speck;2.76163918879889e-06!GO:0009259;ribonucleotide metabolic process;2.84947742613549e-06!GO:0008021;synaptic vesicle;2.90707707423528e-06!GO:0005761;mitochondrial ribosome;2.90707707423528e-06!GO:0000313;organellar ribosome;2.90707707423528e-06!GO:0051169;nuclear transport;3.15580243457273e-06!GO:0009152;purine ribonucleotide biosynthetic process;3.25075724350373e-06!GO:0031965;nuclear membrane;3.8076614133634e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.32529725452982e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.32529725452982e-06!GO:0007268;synaptic transmission;4.75605838518293e-06!GO:0003779;actin binding;5.45270423147874e-06!GO:0009142;nucleoside triphosphate biosynthetic process;5.49351426799908e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.49351426799908e-06!GO:0006099;tricarboxylic acid cycle;5.598203558589e-06!GO:0046356;acetyl-CoA catabolic process;5.598203558589e-06!GO:0015630;microtubule cytoskeleton;6.19063565159173e-06!GO:0019899;enzyme binding;6.43920135343837e-06!GO:0010467;gene expression;7.10454374739203e-06!GO:0042623;ATPase activity, coupled;7.29668876509077e-06!GO:0005905;coated pit;9.43237612348104e-06!GO:0005770;late endosome;1.05023805433318e-05!GO:0009260;ribonucleotide biosynthetic process;1.10569111350447e-05!GO:0005798;Golgi-associated vesicle;1.12710719341806e-05!GO:0016887;ATPase activity;1.18913656923093e-05!GO:0048489;synaptic vesicle transport;1.32977749645898e-05!GO:0032446;protein modification by small protein conjugation;1.45497761212476e-05!GO:0015934;large ribosomal subunit;1.53688585833846e-05!GO:0009109;coenzyme catabolic process;1.63761268109763e-05!GO:0044432;endoplasmic reticulum part;1.6716158050099e-05!GO:0005635;nuclear envelope;1.67894871202604e-05!GO:0006084;acetyl-CoA metabolic process;2.15612057898379e-05!GO:0016567;protein ubiquitination;2.19449883254007e-05!GO:0005874;microtubule;2.62205185021221e-05!GO:0009055;electron carrier activity;2.63547780196365e-05!GO:0031252;leading edge;2.75413885469244e-05!GO:0045259;proton-transporting ATP synthase complex;3.22248425399744e-05!GO:0016301;kinase activity;3.3589401239947e-05!GO:0008047;enzyme activator activity;3.3589401239947e-05!GO:0005769;early endosome;3.3589401239947e-05!GO:0030120;vesicle coat;3.52889475014367e-05!GO:0030662;coated vesicle membrane;3.52889475014367e-05!GO:0006897;endocytosis;3.88359108640594e-05!GO:0010324;membrane invagination;3.88359108640594e-05!GO:0022890;inorganic cation transmembrane transporter activity;4.87392099630295e-05!GO:0007269;neurotransmitter secretion;5.23445743215387e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.27437410103744e-05!GO:0005730;nucleolus;5.51319874414873e-05!GO:0005085;guanyl-nucleotide exchange factor activity;5.86552231292196e-05!GO:0005096;GTPase activator activity;6.29417366736404e-05!GO:0008654;phospholipid biosynthetic process;7.49715841549515e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.58988170479046e-05!GO:0051187;cofactor catabolic process;7.73197211173058e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.34071611905469e-05!GO:0015399;primary active transmembrane transporter activity;8.34071611905469e-05!GO:0003712;transcription cofactor activity;8.59222494345014e-05!GO:0016311;dephosphorylation;9.47182252952467e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000107530429417896!GO:0005789;endoplasmic reticulum membrane;0.000117700939307788!GO:0017038;protein import;0.000137596232000871!GO:0046578;regulation of Ras protein signal transduction;0.000150654393968587!GO:0045055;regulated secretory pathway;0.000157688476316471!GO:0000902;cell morphogenesis;0.000161725016382145!GO:0032989;cellular structure morphogenesis;0.000161725016382145!GO:0008017;microtubule binding;0.00017142976976493!GO:0004721;phosphoprotein phosphatase activity;0.000173371651856088!GO:0043492;ATPase activity, coupled to movement of substances;0.000178340478979943!GO:0030133;transport vesicle;0.000189651457268679!GO:0006650;glycerophospholipid metabolic process;0.000197598982798949!GO:0046467;membrane lipid biosynthetic process;0.000199175021561209!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000232952408765997!GO:0051128;regulation of cellular component organization and biogenesis;0.000233978457124555!GO:0006403;RNA localization;0.000265052234729765!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000272079463987766!GO:0006613;cotranslational protein targeting to membrane;0.000273870274362545!GO:0001505;regulation of neurotransmitter levels;0.000275209270660768!GO:0009056;catabolic process;0.000291282532642476!GO:0016740;transferase activity;0.000295152566654885!GO:0000151;ubiquitin ligase complex;0.000295152566654885!GO:0005643;nuclear pore;0.000299294250727305!GO:0019208;phosphatase regulator activity;0.000299294250727305!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000320363909500558!GO:0016791;phosphoric monoester hydrolase activity;0.000322600589824159!GO:0004674;protein serine/threonine kinase activity;0.000322600589824159!GO:0006470;protein amino acid dephosphorylation;0.00032613149558621!GO:0050657;nucleic acid transport;0.000332038856558654!GO:0051236;establishment of RNA localization;0.000332038856558654!GO:0050658;RNA transport;0.000332038856558654!GO:0030118;clathrin coat;0.00035281696757667!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000356123648812159!GO:0019902;phosphatase binding;0.000357333551491418!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.000362571729645489!GO:0051188;cofactor biosynthetic process;0.000447353942224156!GO:0044456;synapse part;0.000511936417343519!GO:0030027;lamellipodium;0.000514162581922162!GO:0030054;cell junction;0.000525877197064918!GO:0006752;group transfer coenzyme metabolic process;0.000535659462999525!GO:0044453;nuclear membrane part;0.000540834819019218!GO:0006643;membrane lipid metabolic process;0.000560942168990216!GO:0015980;energy derivation by oxidation of organic compounds;0.000569625623431069!GO:0016568;chromatin modification;0.000584682705141016!GO:0000245;spliceosome assembly;0.000687099539541508!GO:0030384;phosphoinositide metabolic process;0.000713989367092238!GO:0048699;generation of neurons;0.00072898574149326!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000739867888462511!GO:0005773;vacuole;0.000775609510313948!GO:0007019;microtubule depolymerization;0.000865348595842225!GO:0050767;regulation of neurogenesis;0.000882368020439716!GO:0005793;ER-Golgi intermediate compartment;0.000923938245944195!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000941822945790798!GO:0000159;protein phosphatase type 2A complex;0.000941822945790798!GO:0008026;ATP-dependent helicase activity;0.00102940704528602!GO:0005516;calmodulin binding;0.00108155613790057!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00109931439023933!GO:0019888;protein phosphatase regulator activity;0.00111401959231928!GO:0008601;protein phosphatase type 2A regulator activity;0.00115451876400308!GO:0005741;mitochondrial outer membrane;0.00118154661113676!GO:0031072;heat shock protein binding;0.00121474557682191!GO:0030427;site of polarized growth;0.00121495252616765!GO:0022008;neurogenesis;0.00121542647455682!GO:0007266;Rho protein signal transduction;0.00128141031038904!GO:0016197;endosome transport;0.00128220310912867!GO:0048167;regulation of synaptic plasticity;0.00131790947468195!GO:0030182;neuron differentiation;0.00140924185060809!GO:0003729;mRNA binding;0.00141488215417092!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00146441509449116!GO:0003724;RNA helicase activity;0.00151395165638892!GO:0030426;growth cone;0.00151395165638892!GO:0009966;regulation of signal transduction;0.00161555893661282!GO:0051246;regulation of protein metabolic process;0.00163009364919667!GO:0048523;negative regulation of cellular process;0.00166404336673589!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00170005490972562!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00175716465929622!GO:0006891;intra-Golgi vesicle-mediated transport;0.00175855743697674!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00177151405864301!GO:0031902;late endosome membrane;0.00177151405864301!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00186846132295753!GO:0004812;aminoacyl-tRNA ligase activity;0.00186846132295753!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00186846132295753!GO:0004722;protein serine/threonine phosphatase activity;0.00191230864938516!GO:0009108;coenzyme biosynthetic process;0.00193179691257739!GO:0045786;negative regulation of progression through cell cycle;0.00199354965915809!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00201142515106044!GO:0019198;transmembrane receptor protein phosphatase activity;0.00201142515106044!GO:0046488;phosphatidylinositol metabolic process;0.00205844358667892!GO:0030424;axon;0.00210462527074454!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00211645542067508!GO:0043623;cellular protein complex assembly;0.00226320221890684!GO:0022406;membrane docking;0.0022719063209808!GO:0048278;vesicle docking;0.0022719063209808!GO:0006904;vesicle docking during exocytosis;0.00233703085592948!GO:0003697;single-stranded DNA binding;0.0024514013137896!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00256010555838123!GO:0050803;regulation of synapse structure and activity;0.00258822414767879!GO:0032011;ARF protein signal transduction;0.00258822414767879!GO:0032012;regulation of ARF protein signal transduction;0.00258822414767879!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00258822414767879!GO:0004386;helicase activity;0.00260502727641787!GO:0016050;vesicle organization and biogenesis;0.00260578161044592!GO:0006323;DNA packaging;0.00277367718874027!GO:0019867;outer membrane;0.00278794818522722!GO:0031114;regulation of microtubule depolymerization;0.00279016223160842!GO:0007026;negative regulation of microtubule depolymerization;0.00279016223160842!GO:0048487;beta-tubulin binding;0.00284084872787472!GO:0031968;organelle outer membrane;0.00287829856444874!GO:0005869;dynactin complex;0.00288957966547727!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00289058002127979!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00289058002127979!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00289058002127979!GO:0042578;phosphoric ester hydrolase activity;0.00296170335766519!GO:0043038;amino acid activation;0.00301743973324436!GO:0006418;tRNA aminoacylation for protein translation;0.00301743973324436!GO:0043039;tRNA aminoacylation;0.00301743973324436!GO:0051087;chaperone binding;0.00327599907033985!GO:0005774;vacuolar membrane;0.00327599907033985!GO:0043566;structure-specific DNA binding;0.00341091121859565!GO:0016564;transcription repressor activity;0.00357850999181628!GO:0048666;neuron development;0.00366207011825562!GO:0003714;transcription corepressor activity;0.00369921129448809!GO:0006606;protein import into nucleus;0.00372570902568209!GO:0012506;vesicle membrane;0.00373282634774347!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00374015136721098!GO:0051028;mRNA transport;0.00377982360797478!GO:0043209;myelin sheath;0.0038219085324499!GO:0005938;cell cortex;0.00388646953490071!GO:0000904;cellular morphogenesis during differentiation;0.00393968894401543!GO:0008154;actin polymerization and/or depolymerization;0.00395233148197323!GO:0006612;protein targeting to membrane;0.00397913929721006!GO:0051427;hormone receptor binding;0.00403002149020755!GO:0005875;microtubule associated complex;0.0040886974996662!GO:0016126;sterol biosynthetic process;0.00414182873121593!GO:0006644;phospholipid metabolic process;0.00420610465430502!GO:0019903;protein phosphatase binding;0.00423209379413928!GO:0051170;nuclear import;0.00430258419256838!GO:0006892;post-Golgi vesicle-mediated transport;0.00444433575070664!GO:0051168;nuclear export;0.00456665693827752!GO:0030660;Golgi-associated vesicle membrane;0.00465286207599414!GO:0048667;neuron morphogenesis during differentiation;0.00480996552279286!GO:0048812;neurite morphogenesis;0.00480996552279286!GO:0031175;neurite development;0.00498237312243581!GO:0030030;cell projection organization and biogenesis;0.00519031498279585!GO:0048858;cell projection morphogenesis;0.00519031498279585!GO:0032990;cell part morphogenesis;0.00519031498279585!GO:0065002;intracellular protein transport across a membrane;0.00519827796970413!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00537246352916751!GO:0055083;monovalent inorganic anion homeostasis;0.00537246352916751!GO:0055064;chloride ion homeostasis;0.00537246352916751!GO:0030644;cellular chloride ion homeostasis;0.00537246352916751!GO:0005048;signal sequence binding;0.00589450308521159!GO:0007272;ensheathment of neurons;0.00606474113384115!GO:0008366;axon ensheathment;0.00606474113384115!GO:0000323;lytic vacuole;0.00617892728804161!GO:0005764;lysosome;0.00617892728804161!GO:0043087;regulation of GTPase activity;0.00654792689525565!GO:0045211;postsynaptic membrane;0.00685110850407742!GO:0035257;nuclear hormone receptor binding;0.00690170614179824!GO:0006607;NLS-bearing substrate import into nucleus;0.00703005308826741!GO:0046474;glycerophospholipid biosynthetic process;0.00715233163258094!GO:0030658;transport vesicle membrane;0.00722590713635409!GO:0031901;early endosome membrane;0.00729126545113742!GO:0050839;cell adhesion molecule binding;0.00739755936244707!GO:0009117;nucleotide metabolic process;0.00764196350725936!GO:0019887;protein kinase regulator activity;0.00765551017648697!GO:0050811;GABA receptor binding;0.00768919564600423!GO:0030258;lipid modification;0.00807435398304116!GO:0044433;cytoplasmic vesicle part;0.00815920563812529!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00844773575620822!GO:0004667;prostaglandin-D synthase activity;0.00844773575620822!GO:0050802;circadian sleep/wake cycle, sleep;0.00844773575620822!GO:0022410;circadian sleep/wake cycle process;0.00844773575620822!GO:0042749;regulation of circadian sleep/wake cycle;0.00844773575620822!GO:0001508;regulation of action potential;0.00860586369807387!GO:0051261;protein depolymerization;0.00865754186618091!GO:0006414;translational elongation;0.00876920413271204!GO:0051920;peroxiredoxin activity;0.00898519630935229!GO:0005839;proteasome core complex (sensu Eukaryota);0.0090334489566161!GO:0007017;microtubule-based process;0.0090334489566161!GO:0030532;small nuclear ribonucleoprotein complex;0.00903974011431559!GO:0008186;RNA-dependent ATPase activity;0.00921697559078991!GO:0000287;magnesium ion binding;0.00928377227733743!GO:0007611;learning and/or memory;0.00959787853733255!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.00970604693853921!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00981741523596404!GO:0016079;synaptic vesicle exocytosis;0.00981741523596404!GO:0003746;translation elongation factor activity;0.0098378934582652!GO:0048519;negative regulation of biological process;0.0100387857361759!GO:0015629;actin cytoskeleton;0.0103636880504428!GO:0003713;transcription coactivator activity;0.0104011456158173!GO:0005099;Ras GTPase activator activity;0.0105185829409212!GO:0019904;protein domain specific binding;0.0106360517903865!GO:0005765;lysosomal membrane;0.0109238760481184!GO:0030867;rough endoplasmic reticulum membrane;0.0109238760481184!GO:0006695;cholesterol biosynthetic process;0.0114094835184392!GO:0043021;ribonucleoprotein binding;0.0118431078176877!GO:0006665;sphingolipid metabolic process;0.0118781173330967!GO:0051540;metal cluster binding;0.012113067886047!GO:0051536;iron-sulfur cluster binding;0.012113067886047!GO:0001578;microtubule bundle formation;0.0121504390300099!GO:0044437;vacuolar part;0.0122609975931111!GO:0048500;signal recognition particle;0.0125850404388556!GO:0004683;calmodulin-dependent protein kinase activity;0.0127565516004736!GO:0044448;cell cortex part;0.0127713047160166!GO:0008610;lipid biosynthetic process;0.0129397445424414!GO:0006887;exocytosis;0.0130915553085891!GO:0030137;COPI-coated vesicle;0.014062845088432!GO:0000314;organellar small ribosomal subunit;0.0143044334467916!GO:0005763;mitochondrial small ribosomal subunit;0.0143044334467916!GO:0004672;protein kinase activity;0.0143134539234003!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0143579164530365!GO:0042995;cell projection;0.0150919729747798!GO:0008250;oligosaccharyl transferase complex;0.0150919729747798!GO:0005791;rough endoplasmic reticulum;0.0152335207330265!GO:0006818;hydrogen transport;0.015327962241893!GO:0030041;actin filament polymerization;0.0153681821312753!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0159318520176705!GO:0031109;microtubule polymerization or depolymerization;0.0163937401741014!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0164105202323718!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0166474440566752!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.016653470844769!GO:0030132;clathrin coat of coated pit;0.0166569469097573!GO:0007409;axonogenesis;0.017279835393771!GO:0019894;kinesin binding;0.0175287143438003!GO:0043025;cell soma;0.0175924989160006!GO:0019207;kinase regulator activity;0.0177016854333265!GO:0046930;pore complex;0.0182950706406602!GO:0005092;GDP-dissociation inhibitor activity;0.0184677293294336!GO:0006402;mRNA catabolic process;0.0186263116138317!GO:0042254;ribosome biogenesis and assembly;0.0192202860044732!GO:0035258;steroid hormone receptor binding;0.0201802570121375!GO:0030742;GTP-dependent protein binding;0.0204491691637832!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0215651535272006!GO:0008088;axon cargo transport;0.0216091862990149!GO:0030659;cytoplasmic vesicle membrane;0.0218540393552234!GO:0015992;proton transport;0.0218782482870311!GO:0004004;ATP-dependent RNA helicase activity;0.0220795661989031!GO:0000059;protein import into nucleus, docking;0.0221026107230377!GO:0005813;centrosome;0.0222273003588369!GO:0045296;cadherin binding;0.0223071224256844!GO:0009165;nucleotide biosynthetic process;0.0224452174663112!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0225859745058081!GO:0005885;Arp2/3 protein complex;0.0227929591258475!GO:0031124;mRNA 3'-end processing;0.0239593139933068!GO:0006661;phosphatidylinositol biosynthetic process;0.0240363137317332!GO:0035035;histone acetyltransferase binding;0.0240995511274702!GO:0046489;phosphoinositide biosynthetic process;0.0247035276420085!GO:0004298;threonine endopeptidase activity;0.0249274035137695!GO:0048168;regulation of neuronal synaptic plasticity;0.025020478308563!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0257738313152917!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0257738313152917!GO:0033673;negative regulation of kinase activity;0.0259654796294153!GO:0006469;negative regulation of protein kinase activity;0.0259654796294153!GO:0005868;cytoplasmic dynein complex;0.0260324014617426!GO:0001726;ruffle;0.0263430576690803!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0267238989125026!GO:0045047;protein targeting to ER;0.0267238989125026!GO:0008139;nuclear localization sequence binding;0.0268471930022463!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0268534245658337!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0268534245658337!GO:0000209;protein polyubiquitination;0.0271051331927023!GO:0035023;regulation of Rho protein signal transduction;0.0271479581725595!GO:0030125;clathrin vesicle coat;0.0272324463889783!GO:0030665;clathrin coated vesicle membrane;0.0272324463889783!GO:0007612;learning;0.0276003935332664!GO:0046839;phospholipid dephosphorylation;0.0280457093466201!GO:0006259;DNA metabolic process;0.0287886118828264!GO:0007034;vacuolar transport;0.0292387992221056!GO:0000062;acyl-CoA binding;0.0297090918819784!GO:0008180;signalosome;0.029879018911808!GO:0030119;AP-type membrane coat adaptor complex;0.0305007307655853!GO:0042670;retinal cone cell differentiation;0.0307903811442125!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0307903811442125!GO:0046549;retinal cone cell development;0.0307903811442125!GO:0004576;oligosaccharyl transferase activity;0.0308151254355855!GO:0031371;ubiquitin conjugating enzyme complex;0.0308426306120593!GO:0006595;polyamine metabolic process;0.0312108428436385!GO:0043681;protein import into mitochondrion;0.0312108428436385!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0335948524853407!GO:0005100;Rho GTPase activator activity;0.0340466731766016!GO:0006672;ceramide metabolic process;0.0344756226094473!GO:0030131;clathrin adaptor complex;0.0345121642473817!GO:0051539;4 iron, 4 sulfur cluster binding;0.0345407499522118!GO:0008312;7S RNA binding;0.0354956403953542!GO:0004423;iduronate-2-sulfatase activity;0.0360649917667775!GO:0043407;negative regulation of MAP kinase activity;0.0366458029312162!GO:0003711;transcription elongation regulator activity;0.0371089216111753!GO:0016615;malate dehydrogenase activity;0.0375592077826009!GO:0006366;transcription from RNA polymerase II promoter;0.0384941048511027!GO:0033130;acetylcholine receptor binding;0.0395547627334958!GO:0008022;protein C-terminus binding;0.0397727691208806!GO:0016363;nuclear matrix;0.0399500862639977!GO:0051287;NAD binding;0.0413391762090955!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0415693517269306!GO:0031301;integral to organelle membrane;0.0418586092293212!GO:0005952;cAMP-dependent protein kinase complex;0.0418586092293212!GO:0005234;extracellular-glutamate-gated ion channel activity;0.0422464979397763!GO:0042552;myelination;0.0422510364254628!GO:0051348;negative regulation of transferase activity;0.042384409143864!GO:0007158;neuron adhesion;0.0424686191343091!GO:0006916;anti-apoptosis;0.0429074635129843!GO:0016579;protein deubiquitination;0.0432546818153172!GO:0019911;structural constituent of myelin sheath;0.0435108476148714!GO:0005815;microtubule organizing center;0.0439442272521102!GO:0051726;regulation of cell cycle;0.0443927340887717!GO:0006611;protein export from nucleus;0.0445648305405877!GO:0032318;regulation of Ras GTPase activity;0.0447152971385537!GO:0008286;insulin receptor signaling pathway;0.0448831632254899!GO:0031110;regulation of microtubule polymerization or depolymerization;0.0451581370915533!GO:0006376;mRNA splice site selection;0.0451581370915533!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0451581370915533!GO:0051252;regulation of RNA metabolic process;0.0459267266037493!GO:0009892;negative regulation of metabolic process;0.0459814258180293!GO:0006399;tRNA metabolic process;0.0463114007060873!GO:0048499;synaptic vesicle membrane organization and biogenesis;0.0465005234932141!GO:0030285;integral to synaptic vesicle membrane;0.0465005234932141!GO:0030911;TPR domain binding;0.0469887555219778!GO:0046519;sphingoid metabolic process;0.0472449335783599!GO:0008038;neuron recognition;0.0478470162073836!GO:0008526;phosphatidylinositol transporter activity;0.048047830822764 | |||
|sample_id=10039 | |sample_id=10039 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=insula | |sample_tissue=insula | ||
|top_motifs=REST:4.55264096162;NHLH1,2:4.45367622929;EGR1..3:4.44347393155;AHR_ARNT_ARNT2:4.17517135414;PRRX1,2:4.05057661225;MYFfamily:3.83021369214;ZFP161:3.76554430806;MTE{core}:3.70157521518;ATF2:3.67301252527;MED-1{core}:3.65727115447;ZBTB6:3.55660337704;PAX5:3.54727656467;RREB1:3.47861349929;RFX1:3.35514406066;TFAP2B:3.35508220906;CUX2:3.23190364929;MTF1:3.20273484515;GTF2I:3.01275068352;HIC1:3.00469515651;MZF1:2.94160733443;SMAD1..7,9:2.79602159473;DBP:2.76582130862;HOXA9_MEIS1:2.72703696336;PRDM1:2.59588344649;BREu{core}:2.59115432333;OCT4_SOX2{dimer}:2.48412377263;TGIF1:2.4828412589;POU5F1:2.47567574539;SOX2:2.46135937351;NKX2-3_NKX2-5:2.42482870529;NANOG:2.41389372334;PATZ1:2.35609013217;SOX5:2.33610935443;MAZ:2.30567697419;JUN:2.27872357201;LMO2:2.27797384297;POU6F1:2.25119962198;RFX2..5_RFXANK_RFXAP:2.23979648603;SOX{8,9,10}:2.2339570541;FOXM1:2.23390352391;GFI1B:2.19589140236;NKX3-2:2.19563369789;MAFB:2.10284138789;GCM1,2:1.97127501997;TFDP1:1.89967126368;NRF1:1.89602905949;PAX6:1.85823895188;NFIX:1.80227971107;SOX17:1.77325237453;EBF1:1.7203339069;LEF1_TCF7_TCF7L1,2:1.69162502121;MYOD1:1.56630501323;ARID5B:1.56393145531;POU3F1..4:1.55143301756;HMGA1,2:1.51368232847;FOX{F1,F2,J1}:1.48189783154;GTF2A1,2:1.46525661493;RORA:1.42477667797;EP300:1.41539861079;RBPJ:1.41275178817;ZNF238:1.38618932004;ESRRA:1.37352791397;CDC5L:1.37293483261;HAND1,2:1.35543355057;NFIL3:1.33754612472;GATA4:1.33739818969;ADNP_IRX_SIX_ZHX:1.32461584163;HBP1_HMGB_SSRP1_UBTF:1.31340382399;SP1:1.30221849189;KLF4:1.29941649347;HOX{A4,D4}:1.2549611617;ZNF423:1.20309412726;XBP1:1.11837224814;SREBF1,2:1.09670318212;T:1.06365268102;MEF2{A,B,C,D}:1.05827707365;CREB1:0.98250526831;ZNF143:0.944252319915;TBX4,5:0.891639350186;TFAP2{A,C}:0.841633309653;YY1:0.840051797347;HMX1:0.838942002396;FOXN1:0.823604222471;ZEB1:0.787712735269;CRX:0.75615139821;TLX2:0.713650050244;SPZ1:0.687338356182;PBX1:0.658340513878;GFI1:0.627197078644;FOXQ1:0.607889999132;FOXP1:0.607511922718;TLX1..3_NFIC{dimer}:0.600031369107;ZIC1..3:0.583359310448;FOXP3:0.575740347158;ALX1:0.566997699386;XCPE1{core}:0.552654509135;bHLH_family:0.53853258253;STAT1,3:0.511164458235;ATF5_CREB3:0.478801359823;ATF4:0.414416494896;GZF1:0.413994587758;NKX6-1,2:0.372067473095;FOX{D1,D2}:0.363460131389;ZNF384:0.360406096812;BPTF:0.353183511846;PAX3,7:0.266338669077;MYBL2:0.234173563489;NANOG{mouse}:0.231444254727;POU1F1:0.176150153239;PAX2:0.167334347392;VSX1,2:0.144030673639;ONECUT1,2:0.118206205912;NR3C1:0.0862384340001;AR:0.0764920053552;LHX3,4:0.0254404106532;NFY{A,B,C}:0.0149099261113;IKZF1:0.0037735038623;IRF7:-0.00781408510147;FOX{I1,J2}:-0.00951492480427;TEF:-0.0351203645297;ZNF148:-0.0376829261967;PAX1,9:-0.049387151959;NFE2L2:-0.0511645473513;TFAP4:-0.0814729365852;SNAI1..3:-0.128613309795;FOXA2:-0.192166424481;PAX4:-0.207430533373;TOPORS:-0.276013537126;IKZF2:-0.292038152452;PDX1:-0.30559844401;TAL1_TCF{3,4,12}:-0.336464107794;NFATC1..3:-0.345565942753;GATA6:-0.390467927881;HOX{A6,A7,B6,B7}:-0.401356557001;NFE2:-0.422407390211;NR5A1,2:-0.451474268344;SPI1:-0.523626957764;NFE2L1:-0.529008012722;HSF1,2:-0.529964004652;FOXD3:-0.551920299372;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.602752721246;IRF1,2:-0.627440882787;DMAP1_NCOR{1,2}_SMARC:-0.630039647191;CEBPA,B_DDIT3:-0.632408365865;SPIB:-0.639850864058;GLI1..3:-0.651771169482;NR1H4:-0.665726817595;TFCP2:-0.669439476622;UFEwm:-0.680564800647;FOXL1:-0.697579700743;ETS1,2:-0.715026316179;ATF6:-0.718207895291;FOSL2:-0.739769622503;ESR1:-0.74041527486;STAT2,4,6:-0.765274887831;PAX8:-0.774052074187;FOXO1,3,4:-0.828313233967;HNF1A:-0.860444714299;TP53:-0.870951806603;BACH2:-0.913330090696;FOS_FOS{B,L1}_JUN{B,D}:-0.949910331352;TEAD1:-0.966207688054;ELK1,4_GABP{A,B1}:-0.976628746412;HIF1A:-1.01181744774;RUNX1..3:-1.10942947207;TBP:-1.12658283369;HNF4A_NR2F1,2:-1.1455758597;SRF:-1.16234201581;PPARG:-1.21476706433;NFKB1_REL_RELA:-1.23036062838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.29191703811;HLF:-1.31457652256;E2F1..5:-1.33446161638;POU2F1..3:-1.37314176728;MYB:-1.41805232556;NKX3-1:-1.42397023074;RXR{A,B,G}:-1.46439303956;STAT5{A,B}:-1.6235061593;PITX1..3:-1.63212067295;ELF1,2,4:-1.6440112727;RXRA_VDR{dimer}:-1.6666062477;HES1:-1.69578600154;ZBTB16:-1.69757669796;NKX2-2,8:-1.70155883096;ALX4:-1.91442399913;EN1,2:-1.93447129406;EVI1:-2.21497844881;HOX{A5,B5}:-2.3352263681;NKX2-1,4:-2.3652813881;AIRE:-2.54107337946;CDX1,2,4:-2.75207925876;NR6A1:-3.4036621706 | |top_motifs=REST:4.55264096162;NHLH1,2:4.45367622929;EGR1..3:4.44347393155;AHR_ARNT_ARNT2:4.17517135414;PRRX1,2:4.05057661225;MYFfamily:3.83021369214;ZFP161:3.76554430806;MTE{core}:3.70157521518;ATF2:3.67301252527;MED-1{core}:3.65727115447;ZBTB6:3.55660337704;PAX5:3.54727656467;RREB1:3.47861349929;RFX1:3.35514406066;TFAP2B:3.35508220906;CUX2:3.23190364929;MTF1:3.20273484515;GTF2I:3.01275068352;HIC1:3.00469515651;MZF1:2.94160733443;SMAD1..7,9:2.79602159473;DBP:2.76582130862;HOXA9_MEIS1:2.72703696336;PRDM1:2.59588344649;BREu{core}:2.59115432333;OCT4_SOX2{dimer}:2.48412377263;TGIF1:2.4828412589;POU5F1:2.47567574539;SOX2:2.46135937351;NKX2-3_NKX2-5:2.42482870529;NANOG:2.41389372334;PATZ1:2.35609013217;SOX5:2.33610935443;MAZ:2.30567697419;JUN:2.27872357201;LMO2:2.27797384297;POU6F1:2.25119962198;RFX2..5_RFXANK_RFXAP:2.23979648603;SOX{8,9,10}:2.2339570541;FOXM1:2.23390352391;GFI1B:2.19589140236;NKX3-2:2.19563369789;MAFB:2.10284138789;GCM1,2:1.97127501997;TFDP1:1.89967126368;NRF1:1.89602905949;PAX6:1.85823895188;NFIX:1.80227971107;SOX17:1.77325237453;EBF1:1.7203339069;LEF1_TCF7_TCF7L1,2:1.69162502121;MYOD1:1.56630501323;ARID5B:1.56393145531;POU3F1..4:1.55143301756;HMGA1,2:1.51368232847;FOX{F1,F2,J1}:1.48189783154;GTF2A1,2:1.46525661493;RORA:1.42477667797;EP300:1.41539861079;RBPJ:1.41275178817;ZNF238:1.38618932004;ESRRA:1.37352791397;CDC5L:1.37293483261;HAND1,2:1.35543355057;NFIL3:1.33754612472;GATA4:1.33739818969;ADNP_IRX_SIX_ZHX:1.32461584163;HBP1_HMGB_SSRP1_UBTF:1.31340382399;SP1:1.30221849189;KLF4:1.29941649347;HOX{A4,D4}:1.2549611617;ZNF423:1.20309412726;XBP1:1.11837224814;SREBF1,2:1.09670318212;T:1.06365268102;MEF2{A,B,C,D}:1.05827707365;CREB1:0.98250526831;ZNF143:0.944252319915;TBX4,5:0.891639350186;TFAP2{A,C}:0.841633309653;YY1:0.840051797347;HMX1:0.838942002396;FOXN1:0.823604222471;ZEB1:0.787712735269;CRX:0.75615139821;TLX2:0.713650050244;SPZ1:0.687338356182;PBX1:0.658340513878;GFI1:0.627197078644;FOXQ1:0.607889999132;FOXP1:0.607511922718;TLX1..3_NFIC{dimer}:0.600031369107;ZIC1..3:0.583359310448;FOXP3:0.575740347158;ALX1:0.566997699386;XCPE1{core}:0.552654509135;bHLH_family:0.53853258253;STAT1,3:0.511164458235;ATF5_CREB3:0.478801359823;ATF4:0.414416494896;GZF1:0.413994587758;NKX6-1,2:0.372067473095;FOX{D1,D2}:0.363460131389;ZNF384:0.360406096812;BPTF:0.353183511846;PAX3,7:0.266338669077;MYBL2:0.234173563489;NANOG{mouse}:0.231444254727;POU1F1:0.176150153239;PAX2:0.167334347392;VSX1,2:0.144030673639;ONECUT1,2:0.118206205912;NR3C1:0.0862384340001;AR:0.0764920053552;LHX3,4:0.0254404106532;NFY{A,B,C}:0.0149099261113;IKZF1:0.0037735038623;IRF7:-0.00781408510147;FOX{I1,J2}:-0.00951492480427;TEF:-0.0351203645297;ZNF148:-0.0376829261967;PAX1,9:-0.049387151959;NFE2L2:-0.0511645473513;TFAP4:-0.0814729365852;SNAI1..3:-0.128613309795;FOXA2:-0.192166424481;PAX4:-0.207430533373;TOPORS:-0.276013537126;IKZF2:-0.292038152452;PDX1:-0.30559844401;TAL1_TCF{3,4,12}:-0.336464107794;NFATC1..3:-0.345565942753;GATA6:-0.390467927881;HOX{A6,A7,B6,B7}:-0.401356557001;NFE2:-0.422407390211;NR5A1,2:-0.451474268344;SPI1:-0.523626957764;NFE2L1:-0.529008012722;HSF1,2:-0.529964004652;FOXD3:-0.551920299372;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.602752721246;IRF1,2:-0.627440882787;DMAP1_NCOR{1,2}_SMARC:-0.630039647191;CEBPA,B_DDIT3:-0.632408365865;SPIB:-0.639850864058;GLI1..3:-0.651771169482;NR1H4:-0.665726817595;TFCP2:-0.669439476622;UFEwm:-0.680564800647;FOXL1:-0.697579700743;ETS1,2:-0.715026316179;ATF6:-0.718207895291;FOSL2:-0.739769622503;ESR1:-0.74041527486;STAT2,4,6:-0.765274887831;PAX8:-0.774052074187;FOXO1,3,4:-0.828313233967;HNF1A:-0.860444714299;TP53:-0.870951806603;BACH2:-0.913330090696;FOS_FOS{B,L1}_JUN{B,D}:-0.949910331352;TEAD1:-0.966207688054;ELK1,4_GABP{A,B1}:-0.976628746412;HIF1A:-1.01181744774;RUNX1..3:-1.10942947207;TBP:-1.12658283369;HNF4A_NR2F1,2:-1.1455758597;SRF:-1.16234201581;PPARG:-1.21476706433;NFKB1_REL_RELA:-1.23036062838;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.29191703811;HLF:-1.31457652256;E2F1..5:-1.33446161638;POU2F1..3:-1.37314176728;MYB:-1.41805232556;NKX3-1:-1.42397023074;RXR{A,B,G}:-1.46439303956;STAT5{A,B}:-1.6235061593;PITX1..3:-1.63212067295;ELF1,2,4:-1.6440112727;RXRA_VDR{dimer}:-1.6666062477;HES1:-1.69578600154;ZBTB16:-1.69757669796;NKX2-2,8:-1.70155883096;ALX4:-1.91442399913;EN1,2:-1.93447129406;EVI1:-2.21497844881;HOX{A5,B5}:-2.3352263681;NKX2-1,4:-2.3652813881;AIRE:-2.54107337946;CDX1,2,4:-2.75207925876;NR6A1:-3.4036621706 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10039-101F3;search_select_hide=table117:FF:10039-101F3 | |||
}} | }} | ||
Latest revision as of 12:16, 3 June 2020
| Name: | insula, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10646 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10646
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10646
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0313 |
| 10 | 10 | 0.0267 |
| 100 | 100 | 0.268 |
| 101 | 101 | 0.77 |
| 102 | 102 | 0.746 |
| 103 | 103 | 0.176 |
| 104 | 104 | 0.15 |
| 105 | 105 | 0.379 |
| 106 | 106 | 0.0516 |
| 107 | 107 | 0.119 |
| 108 | 108 | 0.849 |
| 109 | 109 | 0.00851 |
| 11 | 11 | 0.0142 |
| 110 | 110 | 0.0453 |
| 111 | 111 | 0.0648 |
| 112 | 112 | 0.282 |
| 113 | 113 | 0.691 |
| 114 | 114 | 0.0734 |
| 115 | 115 | 0.835 |
| 116 | 116 | 0.175 |
| 117 | 117 | 0.0095 |
| 118 | 118 | 0.093 |
| 119 | 119 | 0.0848 |
| 12 | 12 | 0.83 |
| 120 | 120 | 0.135 |
| 121 | 121 | 0.74 |
| 122 | 122 | 0.535 |
| 123 | 123 | 0.628 |
| 124 | 124 | 0.0537 |
| 125 | 125 | 0.15 |
| 126 | 126 | 0.0307 |
| 127 | 127 | 0.457 |
| 128 | 128 | 0.16 |
| 129 | 129 | 0.496 |
| 13 | 13 | 0.00151 |
| 130 | 130 | 0.524 |
| 131 | 131 | 0.0895 |
| 132 | 132 | 0.734 |
| 133 | 133 | 0.00281 |
| 134 | 134 | 0.259 |
| 135 | 135 | 0.231 |
| 136 | 136 | 0.00884 |
| 137 | 137 | 0.78 |
| 138 | 138 | 0.895 |
| 139 | 139 | 0.061 |
| 14 | 14 | 0.89 |
| 140 | 140 | 0.171 |
| 141 | 141 | 0.227 |
| 142 | 142 | 0.892 |
| 143 | 143 | 0.0126 |
| 144 | 144 | 0.837 |
| 145 | 145 | 0.087 |
| 146 | 146 | 0.63 |
| 147 | 147 | 0.833 |
| 148 | 148 | 0.107 |
| 149 | 149 | 0.3 |
| 15 | 15 | 0.0725 |
| 150 | 150 | 0.168 |
| 151 | 151 | 0.613 |
| 152 | 152 | 0.126 |
| 153 | 153 | 0.8 |
| 154 | 154 | 0.591 |
| 155 | 155 | 0.455 |
| 156 | 156 | 0.387 |
| 157 | 157 | 0.447 |
| 158 | 158 | 0.848 |
| 159 | 159 | 0.0801 |
| 16 | 16 | 0.0719 |
| 160 | 160 | 0.192 |
| 161 | 161 | 0.17 |
| 162 | 162 | 0.947 |
| 163 | 163 | 0.861 |
| 164 | 164 | 0.0182 |
| 165 | 165 | 0.0248 |
| 166 | 166 | 0.884 |
| 167 | 167 | 0.289 |
| 168 | 168 | 0.582 |
| 169 | 169 | 0.00726 |
| 17 | 17 | 0.155 |
| 18 | 18 | 0.2 |
| 19 | 19 | 0.191 |
| 2 | 2 | 0.972 |
| 20 | 20 | 0.0983 |
| 21 | 21 | 0.088 |
| 22 | 22 | 0.237 |
| 23 | 23 | 0.416 |
| 24 | 24 | 0.108 |
| 25 | 25 | 0.5 |
| 26 | 26 | 1.59508e-4 |
| 27 | 27 | 0.921 |
| 28 | 28 | 0.658 |
| 29 | 29 | 0.0111 |
| 3 | 3 | 0.0249 |
| 30 | 30 | 0.627 |
| 31 | 31 | 0.85 |
| 32 | 32 | 0.0298 |
| 33 | 33 | 0.0747 |
| 34 | 34 | 0.794 |
| 35 | 35 | 0.462 |
| 36 | 36 | 0.098 |
| 37 | 37 | 0.0353 |
| 38 | 38 | 0.307 |
| 39 | 39 | 0.24 |
| 4 | 4 | 0.978 |
| 40 | 40 | 0.0492 |
| 41 | 41 | 0.429 |
| 42 | 42 | 0.169 |
| 43 | 43 | 0.106 |
| 44 | 44 | 0.066 |
| 45 | 45 | 0.801 |
| 46 | 46 | 0.0581 |
| 47 | 47 | 0.0535 |
| 48 | 48 | 0.0479 |
| 49 | 49 | 0.125 |
| 5 | 5 | 0.43 |
| 50 | 50 | 0.355 |
| 51 | 51 | 0.513 |
| 52 | 52 | 0.625 |
| 53 | 53 | 0.905 |
| 54 | 54 | 0.461 |
| 55 | 55 | 0.396 |
| 56 | 56 | 0.47 |
| 57 | 57 | 0.237 |
| 58 | 58 | 0.303 |
| 59 | 59 | 0.133 |
| 6 | 6 | 0.547 |
| 60 | 60 | 0.0718 |
| 61 | 61 | 0.0591 |
| 62 | 62 | 0.175 |
| 63 | 63 | 0.148 |
| 64 | 64 | 0.2 |
| 65 | 65 | 0.277 |
| 66 | 66 | 0.301 |
| 67 | 67 | 0.327 |
| 68 | 68 | 0.303 |
| 69 | 69 | 0.368 |
| 7 | 7 | 0.0586 |
| 70 | 70 | 0.0151 |
| 71 | 71 | 0.0109 |
| 72 | 72 | 0.471 |
| 73 | 73 | 0.0432 |
| 74 | 74 | 0.607 |
| 75 | 75 | 0.0294 |
| 76 | 76 | 0.366 |
| 77 | 77 | 0.208 |
| 78 | 78 | 0.00309 |
| 79 | 79 | 0.176 |
| 8 | 8 | 0.0538 |
| 80 | 80 | 0.922 |
| 81 | 81 | 0.55 |
| 82 | 82 | 0.477 |
| 83 | 83 | 0.166 |
| 84 | 84 | 0.743 |
| 85 | 85 | 0.198 |
| 86 | 86 | 0.208 |
| 87 | 87 | 0.00614 |
| 88 | 88 | 0.851 |
| 89 | 89 | 0.54 |
| 9 | 9 | 0.54 |
| 90 | 90 | 0.0277 |
| 91 | 91 | 0.422 |
| 92 | 92 | 0.443 |
| 93 | 93 | 0.61 |
| 94 | 94 | 0.0685 |
| 95 | 95 | 0.0261 |
| 96 | 96 | 0.955 |
| 97 | 97 | 0.798 |
| 98 | 98 | 0.213 |
| 99 | 99 | 0.711 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10646
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010039 human insula - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002022 (insula)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010039 (human insula - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
