FF:10073-102A1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005049 | ||
|accession_numbers=CAGE;DRX008693;DRR009565;DRZ000990;DRZ002375;DRZ012340;DRZ013725 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0002021,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010073 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11784.10073-102A1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11784.10073-102A1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11784.10073-102A1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11784.10073-102A1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/occipital%2520lobe%252c%2520fetal%252c%2520donor1.CNhs11784.10073-102A1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10073-102A1 | |id=FF:10073-102A1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010073 | ||
|is_obsolete= | |||
|library_id=CNhs11784 | |||
|library_id_phase_based=2:CNhs11784 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10073 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10073 | |||
|name=occipital lobe, fetal, donor1 | |name=occipital lobe, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11784,LSID820,release009,COMPLETED | |profile_hcage=CNhs11784,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat:RtHFN: Brain occiptal lobe | |rna_catalog_number=Cat:RtHFN: Brain occiptal lobe | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.65675550441188e-239!GO:0043226;organelle;5.98879607260882e-139!GO:0043229;intracellular organelle;2.19437771873927e-138!GO:0043227;membrane-bound organelle;9.30078422615105e-133!GO:0043231;intracellular membrane-bound organelle;1.19213560338376e-132!GO:0005737;cytoplasm;2.59184350536691e-112!GO:0044422;organelle part;2.57325804217918e-82!GO:0044446;intracellular organelle part;2.99350667126404e-81!GO:0044444;cytoplasmic part;1.72294140028677e-72!GO:0032991;macromolecular complex;1.0110123654588e-70!GO:0005634;nucleus;4.39172733262e-62!GO:0005515;protein binding;1.18072070198186e-56!GO:0003723;RNA binding;1.80551874694723e-54!GO:0030529;ribonucleoprotein complex;9.96510025620041e-54!GO:0016043;cellular component organization and biogenesis;2.20610291425279e-53!GO:0043170;macromolecule metabolic process;1.56914162717703e-51!GO:0044238;primary metabolic process;3.67785425545409e-49!GO:0044237;cellular metabolic process;1.61866087106885e-46!GO:0044428;nuclear part;6.2687265177243e-46!GO:0043283;biopolymer metabolic process;4.39451292621713e-42!GO:0043234;protein complex;4.71063958504092e-38!GO:0043233;organelle lumen;4.78651938688558e-38!GO:0031974;membrane-enclosed lumen;4.78651938688558e-38!GO:0010467;gene expression;8.91202606711609e-35!GO:0033036;macromolecule localization;8.91202606711609e-35!GO:0015031;protein transport;1.99080490488171e-34!GO:0031090;organelle membrane;1.60825652305309e-32!GO:0006396;RNA processing;1.60825652305309e-32!GO:0005840;ribosome;1.27272795533333e-31!GO:0008104;protein localization;2.75593962459127e-31!GO:0005739;mitochondrion;2.75593962459127e-31!GO:0016071;mRNA metabolic process;4.21615705117993e-31!GO:0045184;establishment of protein localization;9.54014630278625e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.39921052012577e-29!GO:0006996;organelle organization and biogenesis;1.64795277285215e-29!GO:0008380;RNA splicing;1.71015206242541e-29!GO:0046907;intracellular transport;1.23332632612631e-28!GO:0003735;structural constituent of ribosome;5.27754711891606e-28!GO:0031981;nuclear lumen;2.869537308265e-27!GO:0006397;mRNA processing;1.79895779458128e-26!GO:0019538;protein metabolic process;1.83844989937546e-25!GO:0003676;nucleic acid binding;3.40288210859026e-25!GO:0033279;ribosomal subunit;5.11106425542956e-25!GO:0031975;envelope;2.16308006294281e-24!GO:0065003;macromolecular complex assembly;2.25244893772775e-24!GO:0031967;organelle envelope;2.79524707309955e-24!GO:0006412;translation;2.79575322022381e-24!GO:0051649;establishment of cellular localization;3.37309148933812e-24!GO:0051641;cellular localization;5.31244661534391e-24!GO:0044429;mitochondrial part;7.25890878148425e-24!GO:0044267;cellular protein metabolic process;1.46586763042043e-22!GO:0044260;cellular macromolecule metabolic process;3.75682804266527e-22!GO:0022607;cellular component assembly;4.28454820781397e-22!GO:0006886;intracellular protein transport;7.55462980975978e-22!GO:0005829;cytosol;2.13520475629156e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.4723320666849e-21!GO:0043228;non-membrane-bound organelle;9.72858353218653e-20!GO:0043232;intracellular non-membrane-bound organelle;9.72858353218653e-20!GO:0016070;RNA metabolic process;1.0702786174166e-19!GO:0006512;ubiquitin cycle;1.55393771159106e-19!GO:0044445;cytosolic part;2.12254909984383e-19!GO:0006119;oxidative phosphorylation;2.56096403747106e-19!GO:0005681;spliceosome;1.1860609447043e-18!GO:0005794;Golgi apparatus;2.70961639218819e-18!GO:0000166;nucleotide binding;4.78268162842138e-18!GO:0005654;nucleoplasm;1.25297118000516e-17!GO:0016192;vesicle-mediated transport;1.59639464311706e-17!GO:0009059;macromolecule biosynthetic process;4.23237949619471e-17!GO:0016874;ligase activity;2.13687837173408e-16!GO:0005740;mitochondrial envelope;2.21529075123912e-16!GO:0031966;mitochondrial membrane;5.20136141672233e-16!GO:0019866;organelle inner membrane;7.90466160633426e-16!GO:0009058;biosynthetic process;9.31103974063653e-16!GO:0043412;biopolymer modification;1.27023631945944e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.73689156609679e-15!GO:0044451;nucleoplasm part;3.18902006278608e-15!GO:0044455;mitochondrial membrane part;3.95014761492204e-15!GO:0006259;DNA metabolic process;6.15363591288548e-15!GO:0044249;cellular biosynthetic process;1.52124376857485e-14!GO:0016462;pyrophosphatase activity;1.52124376857485e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.55260921994488e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.84215439142464e-14!GO:0006464;protein modification process;1.84215439142464e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;3.0639368497625e-14!GO:0017111;nucleoside-triphosphatase activity;3.84550916061669e-14!GO:0005743;mitochondrial inner membrane;4.48005957160617e-14!GO:0043687;post-translational protein modification;5.02270091814487e-14!GO:0006323;DNA packaging;1.05357637377033e-13!GO:0005746;mitochondrial respiratory chain;1.6268375431169e-13!GO:0015935;small ribosomal subunit;3.47683527229531e-13!GO:0012505;endomembrane system;3.92250616281948e-13!GO:0050136;NADH dehydrogenase (quinone) activity;9.07484845600681e-13!GO:0003954;NADH dehydrogenase activity;9.07484845600681e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.07484845600681e-13!GO:0015934;large ribosomal subunit;9.88203537858795e-13!GO:0032553;ribonucleotide binding;1.12661372700191e-12!GO:0032555;purine ribonucleotide binding;1.12661372700191e-12!GO:0051276;chromosome organization and biogenesis;2.51491863329792e-12!GO:0022618;protein-RNA complex assembly;3.84873091315142e-12!GO:0048193;Golgi vesicle transport;4.80854051981129e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.20245717881422e-11!GO:0006511;ubiquitin-dependent protein catabolic process;2.31628912284343e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;2.79166285798156e-11!GO:0031965;nuclear membrane;3.67226255359575e-11!GO:0007399;nervous system development;3.94082822260528e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.01342360287449e-11!GO:0042773;ATP synthesis coupled electron transport;4.01342360287449e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.47603495531578e-11!GO:0019941;modification-dependent protein catabolic process;4.67500092010564e-11!GO:0043632;modification-dependent macromolecule catabolic process;4.67500092010564e-11!GO:0008135;translation factor activity, nucleic acid binding;4.67500092010564e-11!GO:0017076;purine nucleotide binding;5.01715362276625e-11!GO:0006457;protein folding;5.06193268045356e-11!GO:0030964;NADH dehydrogenase complex (quinone);6.19754956548883e-11!GO:0045271;respiratory chain complex I;6.19754956548883e-11!GO:0005747;mitochondrial respiratory chain complex I;6.19754956548883e-11!GO:0044257;cellular protein catabolic process;6.8084977503299e-11!GO:0006605;protein targeting;9.80280118515478e-11!GO:0008639;small protein conjugating enzyme activity;1.14074674028789e-10!GO:0004842;ubiquitin-protein ligase activity;1.47948169643742e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.62536682345632e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.71965964135088e-10!GO:0015630;microtubule cytoskeleton;2.80433307287415e-10!GO:0008565;protein transporter activity;2.83439330427427e-10!GO:0044431;Golgi apparatus part;4.9797934053025e-10!GO:0045045;secretory pathway;6.20406918973622e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;7.34322447582421e-10!GO:0000375;RNA splicing, via transesterification reactions;7.34322447582421e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.34322447582421e-10!GO:0019787;small conjugating protein ligase activity;1.34895001534854e-09!GO:0006333;chromatin assembly or disassembly;1.47655682732654e-09!GO:0006913;nucleocytoplasmic transport;3.16784034759725e-09!GO:0008134;transcription factor binding;3.66510886544595e-09!GO:0044265;cellular macromolecule catabolic process;4.14076647496434e-09!GO:0031980;mitochondrial lumen;5.36851244803951e-09!GO:0005759;mitochondrial matrix;5.36851244803951e-09!GO:0051169;nuclear transport;5.73526795663891e-09!GO:0031982;vesicle;6.20018810976026e-09!GO:0031988;membrane-bound vesicle;6.98771262132185e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.21678323845432e-09!GO:0044453;nuclear membrane part;7.27044629727468e-09!GO:0051082;unfolded protein binding;8.56886846648053e-09!GO:0019829;cation-transporting ATPase activity;9.00240338816244e-09!GO:0032559;adenyl ribonucleotide binding;1.15482880568235e-08!GO:0005635;nuclear envelope;1.17439804303422e-08!GO:0003743;translation initiation factor activity;1.51064113093744e-08!GO:0005524;ATP binding;1.65737250394891e-08!GO:0031410;cytoplasmic vesicle;1.68291914226296e-08!GO:0016023;cytoplasmic membrane-bound vesicle;2.08604841426829e-08!GO:0005730;nucleolus;2.14364978718722e-08!GO:0016881;acid-amino acid ligase activity;3.14749940888371e-08!GO:0065004;protein-DNA complex assembly;4.00902247657767e-08!GO:0016568;chromatin modification;4.12507444552955e-08!GO:0005643;nuclear pore;4.47013634764837e-08!GO:0006793;phosphorus metabolic process;5.2983130560656e-08!GO:0006796;phosphate metabolic process;5.2983130560656e-08!GO:0015631;tubulin binding;5.32585353153905e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.62243753234595e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.65918507687548e-08!GO:0000139;Golgi membrane;6.52564181252311e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.16359038803977e-07!GO:0030163;protein catabolic process;1.1857707280729e-07!GO:0043285;biopolymer catabolic process;1.29053440982717e-07!GO:0048770;pigment granule;1.33498085142931e-07!GO:0042470;melanosome;1.33498085142931e-07!GO:0030135;coated vesicle;1.44992707804284e-07!GO:0000785;chromatin;1.59858048528023e-07!GO:0006413;translational initiation;1.6547884396263e-07!GO:0016604;nuclear body;1.66719933383095e-07!GO:0032446;protein modification by small protein conjugation;1.80291889331317e-07!GO:0015986;ATP synthesis coupled proton transport;1.98098433279333e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.98098433279333e-07!GO:0006403;RNA localization;2.09003621155951e-07!GO:0030554;adenyl nucleotide binding;3.00411105161505e-07!GO:0006446;regulation of translational initiation;3.20213560637944e-07!GO:0003924;GTPase activity;3.22508255089085e-07!GO:0005761;mitochondrial ribosome;3.73423934356281e-07!GO:0000313;organellar ribosome;3.73423934356281e-07!GO:0007010;cytoskeleton organization and biogenesis;3.8587274966446e-07!GO:0050657;nucleic acid transport;3.8587274966446e-07!GO:0051236;establishment of RNA localization;3.8587274966446e-07!GO:0050658;RNA transport;3.8587274966446e-07!GO:0000502;proteasome complex (sensu Eukaryota);4.6204610862127e-07!GO:0050794;regulation of cellular process;4.79136815037025e-07!GO:0016567;protein ubiquitination;5.58024562547571e-07!GO:0016607;nuclear speck;9.2895248658176e-07!GO:0005874;microtubule;9.39359075141987e-07!GO:0048475;coated membrane;1.01187481679857e-06!GO:0030117;membrane coat;1.01187481679857e-06!GO:0042623;ATPase activity, coupled;1.0276281747746e-06!GO:0017038;protein import;1.11030679934153e-06!GO:0016887;ATPase activity;1.23930620098771e-06!GO:0006334;nucleosome assembly;1.26925038030707e-06!GO:0051186;cofactor metabolic process;1.27558493492156e-06!GO:0007264;small GTPase mediated signal transduction;1.37924187073481e-06!GO:0009060;aerobic respiration;1.58903298843411e-06!GO:0031497;chromatin assembly;1.91488308583458e-06!GO:0006461;protein complex assembly;2.0032531084647e-06!GO:0005694;chromosome;2.11406694656277e-06!GO:0009057;macromolecule catabolic process;2.88627914059018e-06!GO:0050789;regulation of biological process;3.01898800557323e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.01898800557323e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.01898800557323e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.15486405125522e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.15486405125522e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.16067804083702e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.16067804083702e-06!GO:0009141;nucleoside triphosphate metabolic process;3.16067804083702e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.2269682955982e-06!GO:0008287;protein serine/threonine phosphatase complex;3.98973698623597e-06!GO:0032940;secretion by cell;4.01249174152398e-06!GO:0009150;purine ribonucleotide metabolic process;4.30828334616188e-06!GO:0006163;purine nucleotide metabolic process;4.8436520453966e-06!GO:0006754;ATP biosynthetic process;5.06777040918827e-06!GO:0006753;nucleoside phosphate metabolic process;5.06777040918827e-06!GO:0016310;phosphorylation;6.25000690792109e-06!GO:0007049;cell cycle;6.25000690792109e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.44845938316227e-06!GO:0045259;proton-transporting ATP synthase complex;7.04980430316189e-06!GO:0046034;ATP metabolic process;7.21281898749254e-06!GO:0004386;helicase activity;7.50032905931891e-06!GO:0006164;purine nucleotide biosynthetic process;7.62368578339783e-06!GO:0005905;coated pit;8.13944836385095e-06!GO:0009259;ribonucleotide metabolic process;8.61207899345087e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.09527493575576e-06!GO:0008017;microtubule binding;9.59488550184476e-06!GO:0051028;mRNA transport;1.0082536292959e-05!GO:0008270;zinc ion binding;1.03291988736326e-05!GO:0043005;neuron projection;1.06466160918077e-05!GO:0044427;chromosomal part;1.13698407803674e-05!GO:0005525;GTP binding;1.24142309057931e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.24142309057931e-05!GO:0045333;cellular respiration;1.36447040204001e-05!GO:0046930;pore complex;1.48486671364605e-05!GO:0019222;regulation of metabolic process;1.48486671364605e-05!GO:0008092;cytoskeletal protein binding;1.48515182209351e-05!GO:0003712;transcription cofactor activity;1.61064759229705e-05!GO:0006974;response to DNA damage stimulus;1.84381264126614e-05!GO:0030120;vesicle coat;1.95312317916199e-05!GO:0030662;coated vesicle membrane;1.95312317916199e-05!GO:0005768;endosome;2.14580006640303e-05!GO:0009260;ribonucleotide biosynthetic process;2.30369896554992e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.38399804376407e-05!GO:0006732;coenzyme metabolic process;2.45313750043265e-05!GO:0000902;cell morphogenesis;2.63008467580655e-05!GO:0032989;cellular structure morphogenesis;2.63008467580655e-05!GO:0048471;perinuclear region of cytoplasm;2.8101479272234e-05!GO:0000245;spliceosome assembly;3.04862501171326e-05!GO:0030182;neuron differentiation;3.52968229299694e-05!GO:0000151;ubiquitin ligase complex;3.76848934041035e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.76848934041035e-05!GO:0030532;small nuclear ribonucleoprotein complex;4.80205276664242e-05!GO:0006281;DNA repair;4.81268232701134e-05!GO:0015078;hydrogen ion transmembrane transporter activity;5.49543346826954e-05!GO:0005798;Golgi-associated vesicle;5.9204835006088e-05!GO:0006606;protein import into nucleus;5.9204835006088e-05!GO:0005083;small GTPase regulator activity;6.19063201429355e-05!GO:0006350;transcription;6.36156109719677e-05!GO:0044248;cellular catabolic process;6.68725385838198e-05!GO:0006099;tricarboxylic acid cycle;7.02515324260119e-05!GO:0046356;acetyl-CoA catabolic process;7.02515324260119e-05!GO:0065002;intracellular protein transport across a membrane;7.07384914297346e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.11013378368369e-05!GO:0030030;cell projection organization and biogenesis;8.25938675730808e-05!GO:0048858;cell projection morphogenesis;8.25938675730808e-05!GO:0032990;cell part morphogenesis;8.25938675730808e-05!GO:0051170;nuclear import;8.52787355635351e-05!GO:0003729;mRNA binding;8.54903022321932e-05!GO:0032561;guanyl ribonucleotide binding;9.01643488661928e-05!GO:0019001;guanyl nucleotide binding;9.01643488661928e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.03744580404448e-05!GO:0043623;cellular protein complex assembly;9.3868978976861e-05!GO:0000904;cellular morphogenesis during differentiation;0.00011883091737883!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000132823881780493!GO:0004812;aminoacyl-tRNA ligase activity;0.000132823881780493!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000132823881780493!GO:0008026;ATP-dependent helicase activity;0.000134130878087441!GO:0045786;negative regulation of progression through cell cycle;0.000140632413407133!GO:0005813;centrosome;0.000140733733735311!GO:0048699;generation of neurons;0.000149495080199018!GO:0006084;acetyl-CoA metabolic process;0.000182473779382882!GO:0003697;single-stranded DNA binding;0.0001850959364844!GO:0005769;early endosome;0.000190247169682372!GO:0048666;neuron development;0.000199311319033536!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000199311319033536!GO:0019717;synaptosome;0.000205933906168433!GO:0007017;microtubule-based process;0.000209643350076064!GO:0019899;enzyme binding;0.000210946809209214!GO:0043566;structure-specific DNA binding;0.000229615629433663!GO:0009055;electron carrier activity;0.000232621477356022!GO:0048489;synaptic vesicle transport;0.00023477938577143!GO:0048667;neuron morphogenesis during differentiation;0.000246070207820812!GO:0048812;neurite morphogenesis;0.000246070207820812!GO:0044440;endosomal part;0.00024980139013485!GO:0010008;endosome membrane;0.00024980139013485!GO:0031175;neurite development;0.000255687800841654!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000261686290476515!GO:0042254;ribosome biogenesis and assembly;0.000262095983916142!GO:0009109;coenzyme catabolic process;0.00026232552708811!GO:0030427;site of polarized growth;0.00028188226525995!GO:0030136;clathrin-coated vesicle;0.000284895172437326!GO:0030426;growth cone;0.000315378206955205!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000328891469042483!GO:0051188;cofactor biosynthetic process;0.000362620370283786!GO:0016044;membrane organization and biogenesis;0.000372165082415814!GO:0043038;amino acid activation;0.00037635872779245!GO:0006418;tRNA aminoacylation for protein translation;0.00037635872779245!GO:0043039;tRNA aminoacylation;0.00037635872779245!GO:0005815;microtubule organizing center;0.00039431297005162!GO:0005875;microtubule associated complex;0.000403919615780501!GO:0016311;dephosphorylation;0.000408607927939817!GO:0022008;neurogenesis;0.000421848691446176!GO:0032774;RNA biosynthetic process;0.000428153238197677!GO:0030029;actin filament-based process;0.0004297318446868!GO:0010468;regulation of gene expression;0.000453757563871659!GO:0006351;transcription, DNA-dependent;0.000454218859201131!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0004842737883412!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000489753758102616!GO:0015399;primary active transmembrane transporter activity;0.000489753758102616!GO:0005783;endoplasmic reticulum;0.000497236077342437!GO:0007409;axonogenesis;0.000500469665775142!GO:0051726;regulation of cell cycle;0.00050333156126309!GO:0022402;cell cycle process;0.000506448014588498!GO:0006613;cotranslational protein targeting to membrane;0.000524610521373646!GO:0016740;transferase activity;0.000533840312828453!GO:0006414;translational elongation;0.000568293389637351!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000648792415976382!GO:0006752;group transfer coenzyme metabolic process;0.000674681766901503!GO:0051168;nuclear export;0.000703376580367011!GO:0031323;regulation of cellular metabolic process;0.000714367055194279!GO:0030027;lamellipodium;0.000788388964511521!GO:0000074;regulation of progression through cell cycle;0.00079603680101507!GO:0005793;ER-Golgi intermediate compartment;0.00083645468043695!GO:0008654;phospholipid biosynthetic process;0.000838563610445089!GO:0030695;GTPase regulator activity;0.000872302426986173!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000936257570167776!GO:0007269;neurotransmitter secretion;0.000948867591684928!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000948867591684928!GO:0030118;clathrin coat;0.000966937569718291!GO:0051187;cofactor catabolic process;0.000993824049865472!GO:0005667;transcription factor complex;0.00100022996038154!GO:0004674;protein serine/threonine kinase activity;0.00108758668966016!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00126464039440036!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00126464039440036!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00126464039440036!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00127366648772657!GO:0006470;protein amino acid dephosphorylation;0.00133167277783142!GO:0000059;protein import into nucleus, docking;0.00147982291608902!GO:0031252;leading edge;0.00150594879829246!GO:0005770;late endosome;0.00152369121629144!GO:0045449;regulation of transcription;0.00152632989839191!GO:0016363;nuclear matrix;0.00158904506201136!GO:0030425;dendrite;0.00158905272703769!GO:0006891;intra-Golgi vesicle-mediated transport;0.00161430124957168!GO:0006366;transcription from RNA polymerase II promoter;0.00174800818362535!GO:0031901;early endosome membrane;0.00180315007098054!GO:0009108;coenzyme biosynthetic process;0.00192743604418427!GO:0000159;protein phosphatase type 2A complex;0.00193064613863988!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00195957103725792!GO:0046914;transition metal ion binding;0.00198002961312205!GO:0051427;hormone receptor binding;0.00212785402021652!GO:0006399;tRNA metabolic process;0.00212959216463163!GO:0006892;post-Golgi vesicle-mediated transport;0.00214821848828992!GO:0051128;regulation of cellular component organization and biogenesis;0.00222847391561046!GO:0008601;protein phosphatase type 2A regulator activity;0.00223101860476314!GO:0004721;phosphoprotein phosphatase activity;0.00230152685873671!GO:0050767;regulation of neurogenesis;0.00295742039775961!GO:0035257;nuclear hormone receptor binding;0.00320053668234466!GO:0006355;regulation of transcription, DNA-dependent;0.00333149154354842!GO:0019208;phosphatase regulator activity;0.00341130931154746!GO:0007265;Ras protein signal transduction;0.00345459675842377!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00348624716396817!GO:0008250;oligosaccharyl transferase complex;0.00358996413283427!GO:0004576;oligosaccharyl transferase activity;0.00365979446168994!GO:0006650;glycerophospholipid metabolic process;0.00366479766447528!GO:0051087;chaperone binding;0.00382332471981424!GO:0003713;transcription coactivator activity;0.00382674457470657!GO:0043492;ATPase activity, coupled to movement of substances;0.00390374785635477!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00410153623286077!GO:0048167;regulation of synaptic plasticity;0.00416566906654952!GO:0003724;RNA helicase activity;0.00427834485320178!GO:0030133;transport vesicle;0.00430639103427769!GO:0006364;rRNA processing;0.00446990669176437!GO:0006607;NLS-bearing substrate import into nucleus;0.00458565316852372!GO:0030660;Golgi-associated vesicle membrane;0.00484048874717842!GO:0051056;regulation of small GTPase mediated signal transduction;0.00484048874717842!GO:0006595;polyamine metabolic process;0.00488351487945078!GO:0031072;heat shock protein binding;0.00502605608883187!GO:0016585;chromatin remodeling complex;0.00506404399272804!GO:0048523;negative regulation of cellular process;0.00518325431350258!GO:0006897;endocytosis;0.00518325431350258!GO:0010324;membrane invagination;0.00518325431350258!GO:0016197;endosome transport;0.00545492887849278!GO:0030137;COPI-coated vesicle;0.00582780281926938!GO:0000786;nucleosome;0.0059325310088978!GO:0006260;DNA replication;0.00593940481323233!GO:0000118;histone deacetylase complex;0.00593940481323233!GO:0044432;endoplasmic reticulum part;0.00607526878290938!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00666128004633056!GO:0046467;membrane lipid biosynthetic process;0.00673960963155417!GO:0003746;translation elongation factor activity;0.00678032088203665!GO:0031124;mRNA 3'-end processing;0.00680386855722102!GO:0008139;nuclear localization sequence binding;0.00680821874129898!GO:0008022;protein C-terminus binding;0.00684031633894646!GO:0006338;chromatin remodeling;0.00684216460819508!GO:0030658;transport vesicle membrane;0.00695812972382625!GO:0022406;membrane docking;0.00714561589844349!GO:0048278;vesicle docking;0.00714561589844349!GO:0003730;mRNA 3'-UTR binding;0.00782679552943782!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00813392696382473!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00813392696382473!GO:0016564;transcription repressor activity;0.00818057836882877!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00830120878694731!GO:0005762;mitochondrial large ribosomal subunit;0.00851826292366996!GO:0000315;organellar large ribosomal subunit;0.00851826292366996!GO:0009117;nucleotide metabolic process;0.00873166283060856!GO:0006402;mRNA catabolic process;0.00895688845699941!GO:0005869;dynactin complex;0.00921601894026447!GO:0016072;rRNA metabolic process;0.00963266802555365!GO:0007411;axon guidance;0.00968681953976976!GO:0019902;phosphatase binding;0.0097830144393988!GO:0016481;negative regulation of transcription;0.010002390657196!GO:0005637;nuclear inner membrane;0.0102082492392573!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.0102824382282982!GO:0019198;transmembrane receptor protein phosphatase activity;0.0102824382282982!GO:0000209;protein polyubiquitination;0.0103676459818693!GO:0003682;chromatin binding;0.0106741280437893!GO:0051246;regulation of protein metabolic process;0.0106862960458735!GO:0016584;nucleosome positioning;0.0111566965188865!GO:0051252;regulation of RNA metabolic process;0.0111794973120954!GO:0000314;organellar small ribosomal subunit;0.0111958213409679!GO:0005763;mitochondrial small ribosomal subunit;0.0111958213409679!GO:0006810;transport;0.0119321371542998!GO:0050803;regulation of synapse structure and activity;0.0122087683015095!GO:0019888;protein phosphatase regulator activity;0.012222120134564!GO:0016126;sterol biosynthetic process;0.0122724068581276!GO:0005048;signal sequence binding;0.0123579162129166!GO:0048487;beta-tubulin binding;0.0124581689321361!GO:0016301;kinase activity;0.0134981814545172!GO:0005839;proteasome core complex (sensu Eukaryota);0.0135796248300134!GO:0003899;DNA-directed RNA polymerase activity;0.0138319372699926!GO:0007019;microtubule depolymerization;0.0138880143033075!GO:0032594;protein transport within lipid bilayer;0.0143265694111134!GO:0032907;transforming growth factor-beta3 production;0.0143265694111134!GO:0032596;protein transport into lipid raft;0.0143265694111134!GO:0032910;regulation of transforming growth factor-beta3 production;0.0143265694111134!GO:0032595;B cell receptor transport within lipid bilayer;0.0143265694111134!GO:0033606;chemokine receptor transport within lipid bilayer;0.0143265694111134!GO:0032600;chemokine receptor transport out of lipid raft;0.0143265694111134!GO:0032599;protein transport out of lipid raft;0.0143265694111134!GO:0032597;B cell receptor transport into lipid raft;0.0143265694111134!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0143265694111134!GO:0003711;transcription elongation regulator activity;0.0146580358761628!GO:0006904;vesicle docking during exocytosis;0.0146668457405155!GO:0006612;protein targeting to membrane;0.0147191856805026!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.0148861937766355!GO:0009719;response to endogenous stimulus;0.0149681447051137!GO:0043025;cell soma;0.0156183885535969!GO:0019904;protein domain specific binding;0.0156255470760771!GO:0004722;protein serine/threonine phosphatase activity;0.015862896439164!GO:0046578;regulation of Ras protein signal transduction;0.01616076265212!GO:0030258;lipid modification;0.0163751232728667!GO:0045055;regulated secretory pathway;0.0165805548175177!GO:0005852;eukaryotic translation initiation factor 3 complex;0.016711503929735!GO:0051920;peroxiredoxin activity;0.0167295758074334!GO:0001578;microtubule bundle formation;0.0168689891407267!GO:0000792;heterochromatin;0.0174650060920079!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0176146724905865!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0178412581524346!GO:0008154;actin polymerization and/or depolymerization;0.0178412581524346!GO:0019843;rRNA binding;0.0178412581524346!GO:0065007;biological regulation;0.0179090118515679!GO:0042734;presynaptic membrane;0.0179212392878596!GO:0031301;integral to organelle membrane;0.0181091077754305!GO:0003714;transcription corepressor activity;0.0182180004787452!GO:0030145;manganese ion binding;0.0188111660693152!GO:0008021;synaptic vesicle;0.0188111660693152!GO:0030031;cell projection biogenesis;0.0191140561218117!GO:0019894;kinesin binding;0.0196685917107813!GO:0008286;insulin receptor signaling pathway;0.0198369345999931!GO:0045892;negative regulation of transcription, DNA-dependent;0.0199223451383648!GO:0005885;Arp2/3 protein complex;0.0199247743091523!GO:0040029;regulation of gene expression, epigenetic;0.020040546415699!GO:0006695;cholesterol biosynthetic process;0.020107216329384!GO:0030384;phosphoinositide metabolic process;0.0201381165563927!GO:0005789;endoplasmic reticulum membrane;0.0203972207420065!GO:0003677;DNA binding;0.0207553011981048!GO:0031123;RNA 3'-end processing;0.0212514992812325!GO:0005791;rough endoplasmic reticulum;0.0217768909048849!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0230446295329317!GO:0000339;RNA cap binding;0.0233051148243429!GO:0030132;clathrin coat of coated pit;0.0233348708539682!GO:0022890;inorganic cation transmembrane transporter activity;0.0236645317178856!GO:0006378;mRNA polyadenylation;0.0237494422281386!GO:0003684;damaged DNA binding;0.0238969528401438!GO:0006405;RNA export from nucleus;0.0239704025441602!GO:0015980;energy derivation by oxidation of organic compounds;0.0249168542209557!GO:0016050;vesicle organization and biogenesis;0.0251386893238133!GO:0018196;peptidyl-asparagine modification;0.0251386893238133!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0251386893238133!GO:0007005;mitochondrion organization and biogenesis;0.0252787602539648!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0256420657481294!GO:0046474;glycerophospholipid biosynthetic process;0.0257715660211813!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0261801634962925!GO:0050811;GABA receptor binding;0.0262140817475796!GO:0016791;phosphoric monoester hydrolase activity;0.0263882006490645!GO:0009892;negative regulation of metabolic process;0.0263882006490645!GO:0003690;double-stranded DNA binding;0.0267119227138851!GO:0043681;protein import into mitochondrion;0.0269466276365186!GO:0030125;clathrin vesicle coat;0.0269594257149811!GO:0030665;clathrin coated vesicle membrane;0.0269594257149811!GO:0007006;mitochondrial membrane organization and biogenesis;0.0272814637135793!GO:0005868;cytoplasmic dynein complex;0.0273500143107477!GO:0009165;nucleotide biosynthetic process;0.0273925250429242!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0278979757549996!GO:0005521;lamin binding;0.0279183667683584!GO:0051540;metal cluster binding;0.0279847973154208!GO:0051536;iron-sulfur cluster binding;0.0279847973154208!GO:0008186;RNA-dependent ATPase activity;0.0287678538796551!GO:0005832;chaperonin-containing T-complex;0.0303156113175127!GO:0030175;filopodium;0.031949135112109!GO:0008180;signalosome;0.0327435387715666!GO:0007417;central nervous system development;0.0330195221938548!GO:0007185;transmembrane receptor protein tyrosine phosphatase signaling pathway;0.0331363103580135!GO:0004298;threonine endopeptidase activity;0.033375930817804!GO:0006916;anti-apoptosis;0.0334451792543626!GO:0050770;regulation of axonogenesis;0.0334840219427804!GO:0019887;protein kinase regulator activity;0.0336628305773882!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0337350707364099!GO:0030742;GTP-dependent protein binding;0.0337767435108205!GO:0006383;transcription from RNA polymerase III promoter;0.0343656061207562!GO:0030663;COPI coated vesicle membrane;0.0346221935247528!GO:0030126;COPI vesicle coat;0.0346221935247528!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0352147113697788!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.035600383678811!GO:0045047;protein targeting to ER;0.035600383678811!GO:0030119;AP-type membrane coat adaptor complex;0.0356839184083075!GO:0008312;7S RNA binding;0.0356839184083075!GO:0006611;protein export from nucleus;0.0356839184083075!GO:0016569;covalent chromatin modification;0.0359298762574633!GO:0031902;late endosome membrane;0.0361242266451152!GO:0030041;actin filament polymerization;0.0371281700083392!GO:0046839;phospholipid dephosphorylation;0.0371281700083392!GO:0005938;cell cortex;0.0380445951031604!GO:0030032;lamellipodium biogenesis;0.0384166020988978!GO:0031114;regulation of microtubule depolymerization;0.0386451224168578!GO:0007026;negative regulation of microtubule depolymerization;0.0386451224168578!GO:0048488;synaptic vesicle endocytosis;0.0386627819679773!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0387083702442479!GO:0006818;hydrogen transport;0.0391127000147506!GO:0048519;negative regulation of biological process;0.0404369449688793!GO:0008276;protein methyltransferase activity;0.0404369449688793!GO:0030134;ER to Golgi transport vesicle;0.0405172377474228!GO:0032011;ARF protein signal transduction;0.0405172377474228!GO:0032012;regulation of ARF protein signal transduction;0.0405172377474228!GO:0030867;rough endoplasmic reticulum membrane;0.0407005321288485!GO:0012506;vesicle membrane;0.0410001634863178!GO:0003779;actin binding;0.0410680997143097!GO:0042585;germinal vesicle;0.0412123183620625!GO:0031324;negative regulation of cellular metabolic process;0.0424977958005063!GO:0048500;signal recognition particle;0.0431621037201899!GO:0007158;neuron adhesion;0.0438066273066403!GO:0001505;regulation of neurotransmitter levels;0.0446446259302931!GO:0016579;protein deubiquitination;0.0451541354000725!GO:0019207;kinase regulator activity;0.045686272512678!GO:0008097;5S rRNA binding;0.0459906493321043!GO:0051539;4 iron, 4 sulfur cluster binding;0.0463945975218374!GO:0016859;cis-trans isomerase activity;0.04695183095151!GO:0051179;localization;0.0469809701277772!GO:0008088;axon cargo transport;0.0469867102612815!GO:0043284;biopolymer biosynthetic process;0.0469867102612815!GO:0006352;transcription initiation;0.0469867102612815!GO:0016779;nucleotidyltransferase activity;0.0483268518739965!GO:0035258;steroid hormone receptor binding;0.0483268518739965!GO:0031628;opioid receptor binding;0.0484681242127774!GO:0031852;mu-type opioid receptor binding;0.0484681242127774!GO:0005784;translocon complex;0.0489373995899915!GO:0030127;COPII vesicle coat;0.0490684011333279!GO:0012507;ER to Golgi transport vesicle membrane;0.0490684011333279!GO:0006643;membrane lipid metabolic process;0.0498124298894364!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0499336276000106!GO:0005741;mitochondrial outer membrane;0.0499336276000106!GO:0005684;U2-dependent spliceosome;0.0499336276000106!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0499336276000106!GO:0033043;regulation of organelle organization and biogenesis;0.0499336276000106 | |||
|sample_id=10073 | |sample_id=10073 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=occipital lobe | |sample_tissue=occipital lobe | ||
|top_motifs=PRRX1,2:4.73817258856;NKX2-3_NKX2-5:4.56928912053;FOXM1:4.43308904411;POU5F1:4.38904620437;AHR_ARNT_ARNT2:4.35457149444;MZF1:4.09918483294;ZFP161:3.91247462749;ADNP_IRX_SIX_ZHX:3.84748698701;SOX2:3.82729465891;BREu{core}:3.82474359164;POU1F1:3.81329057812;MED-1{core}:3.81107318778;CUX2:3.73677815158;POU3F1..4:3.6699154449;HOXA9_MEIS1:3.66867268136;POU6F1:3.63289364482;ALX1:3.52772895306;ZNF384:3.48945066966;EGR1..3:3.44657462134;FOXP1:3.38300609304;MTE{core}:3.34969152496;OCT4_SOX2{dimer}:3.20865423069;PRDM1:3.16839130295;NKX6-1,2:3.13229464517;SOX17:3.07610851394;FOXD3:3.06151523105;CDC5L:3.05548794355;TFAP2B:2.97540518397;HMGA1,2:2.9733430142;TEF:2.73787347335;PAX4:2.73377914477;PATZ1:2.70108817057;IKZF2:2.69914805462;TFDP1:2.67694070759;DBP:2.64585266768;LHX3,4:2.6438812867;ARID5B:2.55370471796;NHLH1,2:2.50697696248;RFX1:2.48983741012;T:2.47023990863;RREB1:2.44331402629;REST:2.40120659773;MYFfamily:2.37362605307;GTF2I:2.37285810271;HOX{A4,D4}:2.35943511886;ONECUT1,2:2.33215021627;TGIF1:2.30449740435;GATA4:2.28578153915;SOX{8,9,10}:2.18892297756;GFI1B:2.18051811351;HIC1:2.04606351774;PAX5:2.00543318782;ATF2:1.99177234216;NRF1:1.94709299465;GFI1:1.93627095635;BPTF:1.89881319775;ZBTB6:1.86704310292;SMAD1..7,9:1.86505379786;GCM1,2:1.85328781451;ZIC1..3:1.85085758142;PITX1..3:1.82545166117;TOPORS:1.7994322399;MAZ:1.71157274333;AIRE:1.69897287865;LEF1_TCF7_TCF7L1,2:1.68686390011;EVI1:1.67298814141;NKX3-1:1.58144838783;STAT1,3:1.56412607109;FOXQ1:1.49033235207;KLF4:1.48743711019;RORA:1.46220776297;SOX5:1.44556517445;RBPJ:1.44351720321;MTF1:1.42441203102;FOXL1:1.33203292627;ZBTB16:1.30730583418;ZNF143:1.2938039852;PAX8:1.27953800586;FOXP3:1.24975134044;LMO2:1.16404108707;PAX1,9:1.15958847855;YY1:1.11738402991;NANOG:1.11331710189;CDX1,2,4:1.09647741985;JUN:1.03788034962;PAX6:1.03045084468;RFX2..5_RFXANK_RFXAP:0.983667189094;GZF1:0.945835808144;NKX3-2:0.933665461127;EP300:0.880567353776;FOXN1:0.789254944276;FOXA2:0.647805975871;UFEwm:0.622014269984;ZNF423:0.61599063184;TLX2:0.591989415857;SPZ1:0.436711590713;PBX1:0.431630041024;ATF5_CREB3:0.407712608689;XCPE1{core}:0.330327579618;ATF4:0.325926583547;HBP1_HMGB_SSRP1_UBTF:0.293690374351;CREB1:0.246634718519;MYOD1:0.230686542883;SP1:0.221122979018;MAFB:0.201117042746;PAX3,7:0.198979451864;CRX:0.178324912884;XBP1:0.150897719338;GTF2A1,2:0.123183347298;HAND1,2:0.0776323161403;MEF2{A,B,C,D}:0.0624803299128;NFY{A,B,C}:0.0417907162374;FOX{F1,F2,J1}:0.0317750653599;ELK1,4_GABP{A,B1}:-0.0106339719566;PDX1:-0.0539936977205;HMX1:-0.178876330643;DMAP1_NCOR{1,2}_SMARC:-0.187857237558;GATA6:-0.213560378954;TAL1_TCF{3,4,12}:-0.214125574395;E2F1..5:-0.222405438701;POU2F1..3:-0.24532416525;NANOG{mouse}:-0.261922672357;ZNF238:-0.270323947389;NR1H4:-0.28261197903;VSX1,2:-0.403242279687;ZEB1:-0.458515442303;FOX{D1,D2}:-0.488405242212;TFAP2{A,C}:-0.509289910413;HIF1A:-0.530087625996;FOX{I1,J2}:-0.544261158276;EBF1:-0.571756799662;FOXO1,3,4:-0.577238150321;HNF1A:-0.581551450315;SREBF1,2:-0.58952115178;SPIB:-0.61416630259;ALX4:-0.622880523217;PAX2:-0.629550460755;HSF1,2:-0.667665344378;TLX1..3_NFIC{dimer}:-0.755113063773;NKX2-1,4:-0.76147763204;MYBL2:-0.802311606056;HOX{A5,B5}:-0.807302777608;SPI1:-0.810108744967;HNF4A_NR2F1,2:-0.810661653587;CEBPA,B_DDIT3:-0.815765526993;PPARG:-0.871935710579;HOX{A6,A7,B6,B7}:-0.879342168612;RUNX1..3:-0.904347845549;NFIL3:-0.916180424643;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.917052892397;MYB:-0.919560039624;IRF7:-0.931611108375;TEAD1:-0.940427733841;NR3C1:-0.955881894164;SNAI1..3:-0.96583672164;TBP:-0.977916646337;STAT2,4,6:-1.03265717784;NFATC1..3:-1.05397283506;TFAP4:-1.10313473258;GLI1..3:-1.10974153385;bHLH_family:-1.1120533655;IRF1,2:-1.12579601694;NR6A1:-1.12762115141;NFIX:-1.15918728699;IKZF1:-1.16355568721;NFKB1_REL_RELA:-1.17432881063;FOS_FOS{B,L1}_JUN{B,D}:-1.21035584148;FOSL2:-1.22959901593;NFE2L2:-1.2473933152;ZNF148:-1.29805554813;BACH2:-1.30095104446;AR:-1.30294301314;NFE2L1:-1.32180864198;ETS1,2:-1.37275175693;NR5A1,2:-1.38636602266;NFE2:-1.42199532308;TP53:-1.43827647753;STAT5{A,B}:-1.48739317647;TBX4,5:-1.57061544854;ATF6:-1.57208317447;EN1,2:-1.60132708475;HLF:-1.61056624231;ESRRA:-1.6326978557;RXRA_VDR{dimer}:-1.71392239701;HES1:-1.74213143328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.75382747972;ELF1,2,4:-1.79313495606;TFCP2:-1.89558865292;ESR1:-1.90950862067;NKX2-2,8:-1.98619665149;RXR{A,B,G}:-2.13740559928;SRF:-2.37390258431 | |top_motifs=PRRX1,2:4.73817258856;NKX2-3_NKX2-5:4.56928912053;FOXM1:4.43308904411;POU5F1:4.38904620437;AHR_ARNT_ARNT2:4.35457149444;MZF1:4.09918483294;ZFP161:3.91247462749;ADNP_IRX_SIX_ZHX:3.84748698701;SOX2:3.82729465891;BREu{core}:3.82474359164;POU1F1:3.81329057812;MED-1{core}:3.81107318778;CUX2:3.73677815158;POU3F1..4:3.6699154449;HOXA9_MEIS1:3.66867268136;POU6F1:3.63289364482;ALX1:3.52772895306;ZNF384:3.48945066966;EGR1..3:3.44657462134;FOXP1:3.38300609304;MTE{core}:3.34969152496;OCT4_SOX2{dimer}:3.20865423069;PRDM1:3.16839130295;NKX6-1,2:3.13229464517;SOX17:3.07610851394;FOXD3:3.06151523105;CDC5L:3.05548794355;TFAP2B:2.97540518397;HMGA1,2:2.9733430142;TEF:2.73787347335;PAX4:2.73377914477;PATZ1:2.70108817057;IKZF2:2.69914805462;TFDP1:2.67694070759;DBP:2.64585266768;LHX3,4:2.6438812867;ARID5B:2.55370471796;NHLH1,2:2.50697696248;RFX1:2.48983741012;T:2.47023990863;RREB1:2.44331402629;REST:2.40120659773;MYFfamily:2.37362605307;GTF2I:2.37285810271;HOX{A4,D4}:2.35943511886;ONECUT1,2:2.33215021627;TGIF1:2.30449740435;GATA4:2.28578153915;SOX{8,9,10}:2.18892297756;GFI1B:2.18051811351;HIC1:2.04606351774;PAX5:2.00543318782;ATF2:1.99177234216;NRF1:1.94709299465;GFI1:1.93627095635;BPTF:1.89881319775;ZBTB6:1.86704310292;SMAD1..7,9:1.86505379786;GCM1,2:1.85328781451;ZIC1..3:1.85085758142;PITX1..3:1.82545166117;TOPORS:1.7994322399;MAZ:1.71157274333;AIRE:1.69897287865;LEF1_TCF7_TCF7L1,2:1.68686390011;EVI1:1.67298814141;NKX3-1:1.58144838783;STAT1,3:1.56412607109;FOXQ1:1.49033235207;KLF4:1.48743711019;RORA:1.46220776297;SOX5:1.44556517445;RBPJ:1.44351720321;MTF1:1.42441203102;FOXL1:1.33203292627;ZBTB16:1.30730583418;ZNF143:1.2938039852;PAX8:1.27953800586;FOXP3:1.24975134044;LMO2:1.16404108707;PAX1,9:1.15958847855;YY1:1.11738402991;NANOG:1.11331710189;CDX1,2,4:1.09647741985;JUN:1.03788034962;PAX6:1.03045084468;RFX2..5_RFXANK_RFXAP:0.983667189094;GZF1:0.945835808144;NKX3-2:0.933665461127;EP300:0.880567353776;FOXN1:0.789254944276;FOXA2:0.647805975871;UFEwm:0.622014269984;ZNF423:0.61599063184;TLX2:0.591989415857;SPZ1:0.436711590713;PBX1:0.431630041024;ATF5_CREB3:0.407712608689;XCPE1{core}:0.330327579618;ATF4:0.325926583547;HBP1_HMGB_SSRP1_UBTF:0.293690374351;CREB1:0.246634718519;MYOD1:0.230686542883;SP1:0.221122979018;MAFB:0.201117042746;PAX3,7:0.198979451864;CRX:0.178324912884;XBP1:0.150897719338;GTF2A1,2:0.123183347298;HAND1,2:0.0776323161403;MEF2{A,B,C,D}:0.0624803299128;NFY{A,B,C}:0.0417907162374;FOX{F1,F2,J1}:0.0317750653599;ELK1,4_GABP{A,B1}:-0.0106339719566;PDX1:-0.0539936977205;HMX1:-0.178876330643;DMAP1_NCOR{1,2}_SMARC:-0.187857237558;GATA6:-0.213560378954;TAL1_TCF{3,4,12}:-0.214125574395;E2F1..5:-0.222405438701;POU2F1..3:-0.24532416525;NANOG{mouse}:-0.261922672357;ZNF238:-0.270323947389;NR1H4:-0.28261197903;VSX1,2:-0.403242279687;ZEB1:-0.458515442303;FOX{D1,D2}:-0.488405242212;TFAP2{A,C}:-0.509289910413;HIF1A:-0.530087625996;FOX{I1,J2}:-0.544261158276;EBF1:-0.571756799662;FOXO1,3,4:-0.577238150321;HNF1A:-0.581551450315;SREBF1,2:-0.58952115178;SPIB:-0.61416630259;ALX4:-0.622880523217;PAX2:-0.629550460755;HSF1,2:-0.667665344378;TLX1..3_NFIC{dimer}:-0.755113063773;NKX2-1,4:-0.76147763204;MYBL2:-0.802311606056;HOX{A5,B5}:-0.807302777608;SPI1:-0.810108744967;HNF4A_NR2F1,2:-0.810661653587;CEBPA,B_DDIT3:-0.815765526993;PPARG:-0.871935710579;HOX{A6,A7,B6,B7}:-0.879342168612;RUNX1..3:-0.904347845549;NFIL3:-0.916180424643;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.917052892397;MYB:-0.919560039624;IRF7:-0.931611108375;TEAD1:-0.940427733841;NR3C1:-0.955881894164;SNAI1..3:-0.96583672164;TBP:-0.977916646337;STAT2,4,6:-1.03265717784;NFATC1..3:-1.05397283506;TFAP4:-1.10313473258;GLI1..3:-1.10974153385;bHLH_family:-1.1120533655;IRF1,2:-1.12579601694;NR6A1:-1.12762115141;NFIX:-1.15918728699;IKZF1:-1.16355568721;NFKB1_REL_RELA:-1.17432881063;FOS_FOS{B,L1}_JUN{B,D}:-1.21035584148;FOSL2:-1.22959901593;NFE2L2:-1.2473933152;ZNF148:-1.29805554813;BACH2:-1.30095104446;AR:-1.30294301314;NFE2L1:-1.32180864198;ETS1,2:-1.37275175693;NR5A1,2:-1.38636602266;NFE2:-1.42199532308;TP53:-1.43827647753;STAT5{A,B}:-1.48739317647;TBX4,5:-1.57061544854;ATF6:-1.57208317447;EN1,2:-1.60132708475;HLF:-1.61056624231;ESRRA:-1.6326978557;RXRA_VDR{dimer}:-1.71392239701;HES1:-1.74213143328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.75382747972;ELF1,2,4:-1.79313495606;TFCP2:-1.89558865292;ESR1:-1.90950862067;NKX2-2,8:-1.98619665149;RXR{A,B,G}:-2.13740559928;SRF:-2.37390258431 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10073-102A1;search_select_hide=table117:FF:10073-102A1 | |||
}} | }} | ||
Latest revision as of 12:19, 3 June 2020
| Name: | occipital lobe, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11784 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11784
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11784
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0642 |
| 10 | 10 | 0.108 |
| 100 | 100 | 0.537 |
| 101 | 101 | 0.759 |
| 102 | 102 | 0.865 |
| 103 | 103 | 0.101 |
| 104 | 104 | 0.105 |
| 105 | 105 | 0.148 |
| 106 | 106 | 0.0335 |
| 107 | 107 | 0.0973 |
| 108 | 108 | 0.971 |
| 109 | 109 | 7.03297e-4 |
| 11 | 11 | 0.0283 |
| 110 | 110 | 0.143 |
| 111 | 111 | 0.377 |
| 112 | 112 | 0.201 |
| 113 | 113 | 0.417 |
| 114 | 114 | 0.0557 |
| 115 | 115 | 0.724 |
| 116 | 116 | 0.349 |
| 117 | 117 | 0.0293 |
| 118 | 118 | 0.273 |
| 119 | 119 | 0.216 |
| 12 | 12 | 0.504 |
| 120 | 120 | 0.216 |
| 121 | 121 | 0.399 |
| 122 | 122 | 0.715 |
| 123 | 123 | 0.137 |
| 124 | 124 | 0.48 |
| 125 | 125 | 0.51 |
| 126 | 126 | 0.0142 |
| 127 | 127 | 0.207 |
| 128 | 128 | 0.147 |
| 129 | 129 | 0.365 |
| 13 | 13 | 0.00461 |
| 130 | 130 | 0.0777 |
| 131 | 131 | 0.92 |
| 132 | 132 | 0.711 |
| 133 | 133 | 0.242 |
| 134 | 134 | 0.928 |
| 135 | 135 | 0.643 |
| 136 | 136 | 0.0162 |
| 137 | 137 | 0.475 |
| 138 | 138 | 0.735 |
| 139 | 139 | 0.0807 |
| 14 | 14 | 0.616 |
| 140 | 140 | 0.647 |
| 141 | 141 | 0.446 |
| 142 | 142 | 0.676 |
| 143 | 143 | 0.00768 |
| 144 | 144 | 0.947 |
| 145 | 145 | 0.339 |
| 146 | 146 | 0.403 |
| 147 | 147 | 0.956 |
| 148 | 148 | 0.0402 |
| 149 | 149 | 0.0771 |
| 15 | 15 | 0.0872 |
| 150 | 150 | 0.287 |
| 151 | 151 | 0.414 |
| 152 | 152 | 0.0529 |
| 153 | 153 | 0.84 |
| 154 | 154 | 0.524 |
| 155 | 155 | 0.799 |
| 156 | 156 | 0.575 |
| 157 | 157 | 0.461 |
| 158 | 158 | 0.826 |
| 159 | 159 | 0.269 |
| 16 | 16 | 0.0409 |
| 160 | 160 | 0.247 |
| 161 | 161 | 0.158 |
| 162 | 162 | 0.588 |
| 163 | 163 | 0.448 |
| 164 | 164 | 0.0988 |
| 165 | 165 | 0.192 |
| 166 | 166 | 0.98 |
| 167 | 167 | 0.788 |
| 168 | 168 | 0.0509 |
| 169 | 169 | 0.009 |
| 17 | 17 | 0.0777 |
| 18 | 18 | 0.216 |
| 19 | 19 | 0.124 |
| 2 | 2 | 0.564 |
| 20 | 20 | 0.536 |
| 21 | 21 | 0.158 |
| 22 | 22 | 0.092 |
| 23 | 23 | 0.178 |
| 24 | 24 | 0.0273 |
| 25 | 25 | 0.409 |
| 26 | 26 | 0.0193 |
| 27 | 27 | 0.425 |
| 28 | 28 | 0.636 |
| 29 | 29 | 0.0696 |
| 3 | 3 | 0.046 |
| 30 | 30 | 0.646 |
| 31 | 31 | 0.708 |
| 32 | 32 | 0.0383 |
| 33 | 33 | 0.136 |
| 34 | 34 | 0.545 |
| 35 | 35 | 0.555 |
| 36 | 36 | 0.182 |
| 37 | 37 | 0.0184 |
| 38 | 38 | 0.221 |
| 39 | 39 | 0.24 |
| 4 | 4 | 0.839 |
| 40 | 40 | 0.0419 |
| 41 | 41 | 0.279 |
| 42 | 42 | 0.202 |
| 43 | 43 | 0.113 |
| 44 | 44 | 0.245 |
| 45 | 45 | 0.565 |
| 46 | 46 | 0.178 |
| 47 | 47 | 0.0823 |
| 48 | 48 | 0.0795 |
| 49 | 49 | 0.175 |
| 5 | 5 | 0.317 |
| 50 | 50 | 0.322 |
| 51 | 51 | 0.365 |
| 52 | 52 | 0.359 |
| 53 | 53 | 0.982 |
| 54 | 54 | 0.297 |
| 55 | 55 | 0.64 |
| 56 | 56 | 0.372 |
| 57 | 57 | 0.585 |
| 58 | 58 | 0.215 |
| 59 | 59 | 0.0381 |
| 6 | 6 | 0.915 |
| 60 | 60 | 0.0524 |
| 61 | 61 | 0.0486 |
| 62 | 62 | 0.147 |
| 63 | 63 | 0.126 |
| 64 | 64 | 0.373 |
| 65 | 65 | 0.178 |
| 66 | 66 | 0.333 |
| 67 | 67 | 0.559 |
| 68 | 68 | 0.249 |
| 69 | 69 | 0.511 |
| 7 | 7 | 0.0524 |
| 70 | 70 | 0.0181 |
| 71 | 71 | 0.023 |
| 72 | 72 | 0.159 |
| 73 | 73 | 0.0198 |
| 74 | 74 | 0.533 |
| 75 | 75 | 0.0491 |
| 76 | 76 | 0.672 |
| 77 | 77 | 0.0929 |
| 78 | 78 | 0.0124 |
| 79 | 79 | 0.27 |
| 8 | 8 | 0.106 |
| 80 | 80 | 0.152 |
| 81 | 81 | 0.714 |
| 82 | 82 | 0.363 |
| 83 | 83 | 0.00566 |
| 84 | 84 | 0.906 |
| 85 | 85 | 0.0893 |
| 86 | 86 | 0.251 |
| 87 | 87 | 0.00143 |
| 88 | 88 | 0.696 |
| 89 | 89 | 0.206 |
| 9 | 9 | 0.262 |
| 90 | 90 | 0.384 |
| 91 | 91 | 0.89 |
| 92 | 92 | 0.211 |
| 93 | 93 | 0.985 |
| 94 | 94 | 0.135 |
| 95 | 95 | 0.00962 |
| 96 | 96 | 0.365 |
| 97 | 97 | 0.799 |
| 98 | 98 | 0.299 |
| 99 | 99 | 0.565 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11784
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0002021 (occipital lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010073 (human occipital lobe - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
