FF:10079-102A7: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	left atrium, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11790
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	left atrium
dev stage	40 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8060182
catalog number	Cat:AM6854
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005817

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11790		CAGE		DRX008672		DRR009544

Accession ID Hg19

Library id		BAM		CTSS
CNhs11790		DRZ000969		DRZ002354

Accession ID Hg38

Library id		BAM		CTSS
CNhs11790		DRZ012319		DRZ013704

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.541
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.288
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.402
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.135
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.385
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.00245
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.78
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.497
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	1.292
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.234
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.723
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.323
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.234
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.234
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.168
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.234
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.222
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.234
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.234
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.234
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.234
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.385
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.234
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.586
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.385
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.871
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.234
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0.385
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0223
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.234
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.234
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11790

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0172
MA0003.1	MA0003.1	0.106
MA0004.1	MA0004.1	0.0324
MA0006.1	MA0006.1	0.388
MA0007.1	MA0007.1	0.815
MA0009.1	MA0009.1	0.244
MA0014.1	MA0014.1	0.467
MA0017.1	MA0017.1	0.376
MA0018.2	MA0018.2	0.00384
MA0019.1	MA0019.1	0.0719
MA0024.1	MA0024.1	0.0183
MA0025.1	MA0025.1	0.229
MA0027.1	MA0027.1	0.756
MA0028.1	MA0028.1	4.08711e-8
MA0029.1	MA0029.1	0.333
MA0030.1	MA0030.1	0.169
MA0031.1	MA0031.1	0.421
MA0035.2	MA0035.2	0.0487
MA0038.1	MA0038.1	0.0123
MA0039.2	MA0039.2	0.0475
MA0040.1	MA0040.1	0.631
MA0041.1	MA0041.1	0.209
MA0042.1	MA0042.1	0.531
MA0043.1	MA0043.1	8.13557e-6
MA0046.1	MA0046.1	0.00411
MA0047.2	MA0047.2	0.0551
MA0048.1	MA0048.1	0.00368
MA0050.1	MA0050.1	0.227
MA0051.1	MA0051.1	0.29
MA0052.1	MA0052.1	4.00945e-27
MA0055.1	MA0055.1	5.57916e-4
MA0057.1	MA0057.1	0.354
MA0058.1	MA0058.1	0.0245
MA0059.1	MA0059.1	0.0141
MA0060.1	MA0060.1	2.85966e-6
MA0061.1	MA0061.1	5.95613e-4
MA0062.2	MA0062.2	5.14143e-15
MA0065.2	MA0065.2	0.28
MA0066.1	MA0066.1	0.419
MA0067.1	MA0067.1	0.149
MA0068.1	MA0068.1	0.591
MA0069.1	MA0069.1	0.792
MA0070.1	MA0070.1	0.766
MA0071.1	MA0071.1	0.109
MA0072.1	MA0072.1	0.688
MA0073.1	MA0073.1	0.815
MA0074.1	MA0074.1	0.674
MA0076.1	MA0076.1	1.33596e-10
MA0077.1	MA0077.1	0.893
MA0078.1	MA0078.1	0.836
MA0079.2	MA0079.2	0.312
MA0080.2	MA0080.2	2.67487e-4
MA0081.1	MA0081.1	0.031
MA0083.1	MA0083.1	7.91336e-4
MA0084.1	MA0084.1	0.981
MA0087.1	MA0087.1	0.659
MA0088.1	MA0088.1	0.0118
MA0090.1	MA0090.1	0.0203
MA0091.1	MA0091.1	0.0632
MA0092.1	MA0092.1	0.119
MA0093.1	MA0093.1	0.0273
MA0099.2	MA0099.2	5.15354e-25
MA0100.1	MA0100.1	0.0132
MA0101.1	MA0101.1	0.00895
MA0102.2	MA0102.2	0.125
MA0103.1	MA0103.1	0.32
MA0104.2	MA0104.2	1.95237e-4
MA0105.1	MA0105.1	8.61399e-5
MA0106.1	MA0106.1	0.0592
MA0107.1	MA0107.1	0.00366
MA0108.2	MA0108.2	2.09717e-10
MA0111.1	MA0111.1	0.524
MA0112.2	MA0112.2	0.0615
MA0113.1	MA0113.1	0.0693
MA0114.1	MA0114.1	0.993
MA0115.1	MA0115.1	0.268
MA0116.1	MA0116.1	0.0732
MA0117.1	MA0117.1	0.118
MA0119.1	MA0119.1	0.468
MA0122.1	MA0122.1	0.428
MA0124.1	MA0124.1	0.589
MA0125.1	MA0125.1	0.741
MA0131.1	MA0131.1	0.0232
MA0135.1	MA0135.1	0.773
MA0136.1	MA0136.1	9.43921e-11
MA0137.2	MA0137.2	0.214
MA0138.2	MA0138.2	0.0166
MA0139.1	MA0139.1	0.117
MA0140.1	MA0140.1	0.807
MA0141.1	MA0141.1	2.74322e-4
MA0142.1	MA0142.1	0.00534
MA0143.1	MA0143.1	0.304
MA0144.1	MA0144.1	0.703
MA0145.1	MA0145.1	0.283
MA0146.1	MA0146.1	0.426
MA0147.1	MA0147.1	2.08073e-4
MA0148.1	MA0148.1	0.926
MA0149.1	MA0149.1	0.517
MA0150.1	MA0150.1	3.10151e-4
MA0152.1	MA0152.1	0.449
MA0153.1	MA0153.1	0.94
MA0154.1	MA0154.1	0.924
MA0155.1	MA0155.1	0.033
MA0156.1	MA0156.1	1.7627e-11
MA0157.1	MA0157.1	0.42
MA0159.1	MA0159.1	0.178
MA0160.1	MA0160.1	0.0143
MA0162.1	MA0162.1	0.35
MA0163.1	MA0163.1	0.0302
MA0164.1	MA0164.1	0.558
MA0258.1	MA0258.1	0.0343
MA0259.1	MA0259.1	0.0344

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11790

Novel motif	Logo	P-value
1	1	0.798
10	10	0.105
100	100	0.441
101	101	0.83
102	102	0.684
103	103	0.977
104	104	0.267
105	105	0.777
106	106	0.275
107	107	0.0285
108	108	0.152
109	109	0.381
11	11	0.932
110	110	0.378
111	111	0.386
112	112	0.153
113	113	0.136
114	114	0.776
115	115	0.0414
116	116	0.156
117	117	0.0103
118	118	0.0219
119	119	0.0801
12	12	0.323
120	120	0.187
121	121	0.701
122	122	0.222
123	123	0.0165
124	124	0.908
125	125	0.857
126	126	0.459
127	127	0.732
128	128	0.0818
129	129	0.326
13	13	0.101
130	130	0.728
131	131	0.181
132	132	0.0424
133	133	0.0223
134	134	0.0469
135	135	0.0602
136	136	0.147
137	137	0.669
138	138	0.23
139	139	0.38
14	14	0.807
140	140	0.329
141	141	0.52
142	142	0.862
143	143	0.333
144	144	0.417
145	145	0.614
146	146	0.718
147	147	0.00465
148	148	0.158
149	149	0.036
15	15	0.251
150	150	0.896
151	151	0.414
152	152	0.237
153	153	0.476
154	154	0.838
155	155	0.881
156	156	0.889
157	157	0.98
158	158	0.276
159	159	0.594
16	16	0.941
160	160	0.395
161	161	0.422
162	162	0.903
163	163	0.501
164	164	0.0769
165	165	0.281
166	166	0.013
167	167	0.23
168	168	0.295
169	169	0.217
17	17	0.951
18	18	0.812
19	19	0.0323
2	2	0.0406
20	20	0.00672
21	21	0.823
22	22	0.29
23	23	0.0548
24	24	0.0405
25	25	0.295
26	26	0.175
27	27	0.194
28	28	0.254
29	29	0.0341
3	3	0.583
30	30	0.105
31	31	0.57
32	32	0.455
33	33	0.135
34	34	0.117
35	35	0.888
36	36	0.184
37	37	0.676
38	38	0.87
39	39	0.0996
4	4	0.33
40	40	0.0376
41	41	0.93
42	42	0.17
43	43	0.673
44	44	0.0437
45	45	0.15
46	46	0.825
47	47	0.515
48	48	0.394
49	49	0.712
5	5	0.952
50	50	0.977
51	51	0.946
52	52	0.161
53	53	0.767
54	54	0.479
55	55	0.582
56	56	0.541
57	57	0.153
58	58	0.736
59	59	0.207
6	6	0.75
60	60	0.389
61	61	0.17
62	62	0.977
63	63	0.906
64	64	0.772
65	65	0.283
66	66	0.0027
67	67	0.744
68	68	0.248
69	69	0.811
7	7	0.393
70	70	0.352
71	71	0.218
72	72	0.762
73	73	0.729
74	74	0.569
75	75	0.0329
76	76	0.0569
77	77	0.0196
78	78	0.815
79	79	0.0362
8	8	0.748
80	80	0.764
81	81	0.686
82	82	0.092
83	83	0.517
84	84	0.264
85	85	0.0455
86	86	0.539
87	87	0.0406
88	88	0.969
89	89	0.0538
9	9	0.424
90	90	0.207
91	91	0.0547
92	92	0.312
93	93	0.474
94	94	0.131
95	95	0.0453
96	96	0.606
97	97	0.809
98	98	0.975
99	99	0.108

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11790

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010079 human left atrium - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002079 (left cardiac atrium)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0002081 (cardiac atrium)
0004151 (cardiac chamber)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010079 (human left atrium - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010227 (future cardiac atrium)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008563
+|DRA_sample_Accession=CAGE@SAMD00005817
-|accession_numbers=CAGE;DRX008672;DRR009544;DRZ000969;DRZ002354
+|accession_numbers=CAGE;DRX008672;DRR009544;DRZ000969;DRZ002354;DRZ012319;DRZ013704
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0007100,UBERON:0000948,UBERON:0002079,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0002081,UBERON:0004151,UBERON:0010317,UBERON:0004535,UBERON:0001009
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:172662197..172662216,-!p1@NKX2-5!2.39!243.71!NKX2-5;;chr15:42749722..42749739,-!p2@ZFP106!2.26!316.61!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!2.05!145.80!SOX18;;chr4:174451370..174451387,-!p1@HAND2!1.96!90.77!HAND2;;chr7:35293685..35293718,-!p1@TBX20!1.95!87.19!TBX20;;chr8:11561684..11561751,+!p1@GATA4!1.90!78.62!GATA4;;chr1:214161272..214161322,+!p1@PROX1!1.75!76.47!PROX1;;chr1:27240455..27240474,-!p1@NR0B2!1.64!42.88!NR0B2;;chr2:19558373..19558392,-!p1@OSR1!1.59!100.77!OSR1;;chr17:53342311..53342400,+!p1@HLF!1.52!36.45!HLF;;chr21:39870339..39870443,-!p1@ERG!1.52!32.16!ERG;;chr8:25902876..25902936,-!p1@EBF2!1.51!31.45!EBF2;;chr8:10588010..10588030,-!p1@SOX7!1.48!29.30!SOX7;;chr4:174451350..174451363,-!p3@HAND2!1.48!29.30!HAND2;;chr11:46337652..46337682,+!p16@CREB3L1!1.47!28.59!CREB3L1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.47!28.59!SEBOX;;chr16:79634624..79634642,-!p1@MAF!1.46!105.06!MAF;;chr11:47400078..47400106,-!p1@SPI1!1.46!27.87!SPI1;;chr19:46801639..46801699,+!p1@HIF3A!1.46!27.87!HIF3A;;chr4:26165074..26165110,+!p9@RBPJ!1.46!27.87!RBPJ;;chr6:134210243..134210257,+!p1@TCF21!1.44!26.44!TCF21;;chr16:79634595..79634620,-!p2@MAF!1.42!45.03!MAF;;chr14:105935396..105935413,+!p4@MTA1!1.40!24.30!MTA1;;chr18:19749541..19749557,+!p1@GATA6!1.39!72.18!GATA6;;chr12:52437488..52437507,+!p2@NR4A1!1.39!23.58!NR4A1;;chr2:242556880..242556899,-!p5@THAP4!1.38!22.87!THAP4;;chr18:19749386..19749404,+!p2@GATA6!1.36!31.45!GATA6;;chr3:69788576..69788648,+!p1@MITF!1.33!105.77!MITF;;chr1:40105299..40105326,-!p1@HEYL!1.32!20.01!HEYL;;chr5:158526917..158526932,-!p1@EBF1!1.31!47.17!EBF1;;chr2:145277882..145277967,-!p3@ZEB2!1.31!33.59!ZEB2;;chr2:180427261..180427297,-!p6@ZNF385B!1.31!19.30!ZNF385B;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.31!19.30!SEBOX;;chr17:38256822..38256851,-!p1@NR1D1!1.26!132.22!NR1D1;;chr18:53068911..53068935,-!p4@TCF4!1.26!19.30!TCF4;;chr1:170632285..170632309,+!p1@PRRX1!1.26!19.30!PRRX1;;chr8:55370487..55370503,+!p1@SOX17!1.26!17.15!SOX17;;chr2:68592406..68592424,+!p1@PLEK!1.26!17.15!PLEK;;chr8:106330656..106330684,+!p1@ZFPM2!1.25!43.60!ZFPM2;;chr17:1959369..1959388,+!p2@HIC1!1.25!43.60!HIC1;;chr4:174450089..174450153,-!p2@HAND2!1.24!16.44!HAND2;;chr15:96873984..96873999,+!p3@NR2F2!1.21!110.78!NR2F2;;chr5:88178983..88179012,-!p1@MEF2C!1.20!113.64!MEF2C;;chr7:15726296..15726315,-!p1@MEOX2!1.20!15.01!MEOX2;;chr20:30433396..30433414,-!p1@FOXS1!1.20!15.01!FOXS1;;chr7:44143925..44143970,+!p1@AEBP1!1.18!308.75!AEBP1;;chr5:172662230..172662241,-!p3@NKX2-5!1.18!14.29!NKX2-5;;chr16:85932760..85932775,+!p1@IRF8!1.18!14.29!IRF8;;chr1:61548225..61548299,+!p1@NFIA!1.15!171.53!NFIA;;chr18:19749517..19749531,+!p3@GATA6!1.15!23.58!GATA6;;chr17:41739283..41739297,-!p1@MEOX1!1.14!12.86!MEOX1;;chr7:15726243..15726293,-!p2@MEOX2!1.14!12.86!MEOX2;;chr17:38256799..38256815,-!p3@NR1D1!1.12!22.16!NR1D1;;chr20:50159198..50159299,-!p1@NFATC2!1.12!17.87!NFATC2;;chr7:44143997..44144008,+!p3@AEBP1!1.12!15.72!AEBP1;;chr5:172662303..172662320,-!p2@NKX2-5!1.12!12.15!NKX2-5;;chr8:93074803..93074845,-!p1@RUNX1T1!1.12!12.15!RUNX1T1;;chr20:39317868..39317884,-!p1@MAFB!1.11!142.22!MAFB;;chr11:113930425..113930471,+!p1@ZBTB16!1.11!17.15!ZBTB16;;chr5:124084493..124084524,-!p2@ZNF608!1.10!25.73!ZNF608;;chr5:158527104..158527135,-!p4@EBF1!1.09!11.44!EBF1;;chr5:71803177..71803255,-!p1@ZNF366!1.09!11.44!ZNF366;;chr10:131762504..131762555,-!p1@EBF3!1.09!11.44!EBF3;;chr3:25470156..25470227,+!p2@RARB!1.09!11.44!RARB;;chr1:170633058..170633084,+!p5@PRRX1!1.09!11.44!PRRX1;;chr1:61548374..61548415,+!p4@NFIA!1.07!20.01!NFIA;;chr7:44143978..44143989,+!p2@AEBP1!1.07!20.01!AEBP1;;chr2:192015701..192015743,-!p1@STAT4!1.07!15.01!STAT4;;chr2:180427304..180427323,-!p7@ZNF385B!1.07!10.72!ZNF385B;;chr4:149363494..149363543,-!p1@NR3C2!1.07!10.72!NR3C2;;chr19:46800289..46800327,+!p2@HIF3A!1.07!10.72!HIF3A;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.72!KDM5D;;chr20:50179368..50179392,-!p2@NFATC2!1.06!13.58!NFATC2;;chr8:106330696..106330719,+!p2@ZFPM2!1.06!13.58!ZFPM2;;chr13:72441315..72441454,-!p1@DACH1!1.05!20.73!DACH1;;chr15:42743341..42743377,-!p3@ZFP106!1.05!17.15!ZFP106;;chr7:128577972..128578047,+!p1@IRF5!1.05!16.44!IRF5;;chr19:33793430..33793447,-!p1@CEBPA!1.04!42.17!CEBPA;;chr1:61548069..61548102,+!p3@NFIA!1.04!24.30!NFIA;;chr20:61051039..61051057,-!p1@GATA5!1.04!10.01!GATA5;;chr11:47400062..47400077,-!p2@SPI1!1.04!10.01!SPI1;;chr9:124991204..124991246,-!p1@LHX6!1.04!10.01!LHX6;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.72!PRRX1;;chr12:114845810..114845824,-!p1@TBX5!1.01!9.29!TBX5;;chr1:23696308..23696339,-!p2@ZNF436!1.00!19.30!ZNF436;;chr3:12329358..12329393,+!p3@PPARG!0.99!22.16!PPARG;;chr14:73360799..73360817,-!p1@DPF3!0.98!30.73!DPF3;;chr1:151804244..151804310,-!p1@RORC!0.98!8.58!RORC;;chr1:214161358..214161377,+!p3@PROX1!0.98!8.58!PROX1;;chr20:590944..590960,-!p1@TCF15!0.98!8.58!TCF15;;chr2:242556900..242556916,-!p6@THAP4!0.98!8.58!THAP4;;chr18:19749504..19749515,+!p5@GATA6!0.98!8.58!GATA6;;chr10:51572408..51572454,+!p3@NCOA4!0.96!49.31!NCOA4;;chr1:221053049..221053075,+!p3@HLX!0.96!14.29!HLX;;chr1:170632477..170632506,+!p6@PRRX1!0.95!7.86!PRRX1;;chr16:79634464..79634493,-!p5@MAF!0.95!7.86!MAF;;chr17:6926362..6926377,+!p1@BCL6B!0.95!7.86!BCL6B;;chr8:93074848..93074871,-!p3@RUNX1T1!0.95!7.86!RUNX1T1;;chr22:38380543..38380569,-!p1@SOX10!0.95!7.86!SOX10;;chr3:21792682..21792720,-!p1@ZNF385D!0.95!7.86!ZNF385D;;chr2:145277640..145277771,-!p1@ZEB2!0.94!107.20!ZEB2;;chr9:14314131..14314147,-!p2@NFIB!0.94!44.31!NFIB;;chr3:25469724..25469773,+!p1@RARB!0.94!11.44!RARB;;chr12:26277956..26277980,-!p1@BHLHE41!0.93!27.87!BHLHE41;;chr3:126076264..126076305,-!p2@KLF15!0.93!10.72!KLF15;;chr4:149363475..149363492,-!p2@NR3C2!0.91!7.15!NR3C2;;chr4:26165146..26165163,+!p19@RBPJ!0.91!7.15!RBPJ;;chr18:19749353..19749367,+!p4@GATA6!0.91!7.15!GATA6;;chr13:72441074..72441172,-!p2@DACH1!0.91!7.15!DACH1;;chr5:158527139..158527161,-!p5@EBF1!0.91!7.15!EBF1;;chr7:73038839..73038862,-!p1@MLXIPL!0.91!7.15!MLXIPL;;chr3:18466787..18466839,-!p1@SATB1!0.90!32.16!SATB1;;chr12:96588368..96588394,+!p3@ELK3!0.90!19.30!ELK3;;chr17:7492684..7492778,-!p2@SOX15!0.90!15.01!SOX15;;chr2:145282041..145282092,-!p8@ZEB2!0.90!10.72!ZEB2;;chr20:51588873..51588953,+!p1@TSHZ2!0.90!9.29!TSHZ2;;chr3:21792585..21792625,-!p2@ZNF385D!0.90!7.86!ZNF385D;;chr18:6414884..6414942,-!p1@L3MBTL4!0.89!8.58!L3MBTL4;;chr15:42749346..42749359,-!p7@ZFP106!0.89!7.86!ZFP106;;chr12:24715376..24715432,-!p1@SOX5!0.88!8.58!SOX5;;chr19:45908292..45908374,-!p1@PPP1R13L!0.87!60.75!PPP1R13L;;chr12:26277929..26277955,-!p3@BHLHE41!0.87!9.29!BHLHE41;;chr1:61869835..61869848,+!p8@NFIA!0.87!8.58!NFIA;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.15!PRRX1;;chr1:214161328..214161348,+!p2@PROX1!0.87!6.43!PROX1;;chr11:47399996..47400014,-!p4@SPI1!0.87!6.43!SPI1;;chrY:2803415..2803468,+!p1@ZFY!0.87!6.43!ZFY;;chrY:21906761..21906810,-!p2@KDM5D!0.87!6.43!KDM5D;;chr16:67198633..67198671,+!p1@HSF4!0.87!6.43!HSF4;;chr17:46126136..46126152,+!p1@NFE2L1!0.86!341.62!NFE2L1;;chr6:19837592..19837621,+!p1@ID4!0.86!40.02!ID4;;chr3:71179746..71179783,-!p7@FOXP1!0.86!22.16!FOXP1;;chr3:126076242..126076257,-!p1@KLF15!0.86!7.86!KLF15;;chr9:77112244..77112262,+!p1@RORB!0.86!7.15!RORB;;chr9:102584262..102584276,+!p1@NR4A3!0.85!14.29!NR4A3;;chr5:88179195..88179224,-!p3@MEF2C!0.85!10.01!MEF2C;;chr3:12330560..12330579,+!p1@PPARG!0.85!7.15!PPARG;;chr1:61924375..61924380,+!p6@NFIA!0.84!8.58!NFIA;;chr2:46524537..46524553,+!p1@EPAS1!0.83!605.35!EPAS1;;chr2:192015750..192015793,-!p2@STAT4!0.83!7.86!STAT4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.83!5.72!PEG3;;chr1:216896752..216896778,-!p1@ESRRG!0.83!5.72!ESRRG;;chr7:35293665..35293680,-!p2@TBX20!0.83!5.72!TBX20;;chr7:63505799..63505904,+!p1@ZNF727!0.83!5.72!ZNF727;;chr15:96874012..96874042,+!p2@NR2F2!0.82!54.32!NR2F2;;chr7:14029283..14029311,-!p1@ETV1!0.82!32.16!ETV1;;chr18:72922811..72922827,+!p1@TSHZ1!0.82!30.02!TSHZ1;;chr7:149470641..149470694,-!p1@ZNF467!0.82!27.16!ZNF467;;chr1:61547894..61547968,+!p2@NFIA!0.82!17.15!NFIA;;chr19:13134772..13134822,+!p2@NFIX!0.82!8.58!NFIX;;chr1:209979467..209979494,-!p1@IRF6!0.82!6.43!IRF6;;chr14:21994449..21994524,-!p2@SALL2!0.81!17.15!SALL2;;chr6:126070769..126070801,+!p1@HEY2!0.81!6.43!HEY2;;chr18:22932080..22932170,-!p1@ZNF521!0.80!24.30!ZNF521;;chr5:88179017..88179046,-!p2@MEF2C!0.80!22.87!MEF2C;;chr2:113057415..113057477,+!p3@ZC3H6!0.80!7.15!ZC3H6;;chr19:35759824..35759891,+!p1@USF2!0.79!173.67!USF2;;chr14:21566731..21566836,-!p1@ZNF219!0.79!60.75!ZNF219;;chr18:53257001..53257015,-!p5@TCF4!0.79!9.29!TCF4;;chr4:87856191..87856208,+!p2@AFF1!0.78!43.60!AFF1;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.15!PRRX1;;chr7:44143738..44143760,+!p4@AEBP1!0.78!5.72!AEBP1;;chr7:115670804..115670825,-!p1@TFEC!0.78!5.00!TFEC;;chr8:93115274..93115323,-!p4@RUNX1T1!0.78!5.00!RUNX1T1;;chr1:10856639..10856662,-!p2@CASZ1!0.78!5.00!CASZ1;;chr1:214161854..214161892,+!p4@PROX1!0.78!5.00!PROX1;;chr1:221053444..221053473,+!p8@HLX!0.78!5.00!HLX;;chr2:5832508..5832524,+!p1@SOX11!0.78!5.00!SOX11;;chr3:128212033..128212051,-!p1@GATA2!0.78!5.00!GATA2;;chr3:69915385..69915438,+!p3@MITF!0.78!5.00!MITF;;chr4:111544254..111544270,-!p3@PITX2!0.78!5.00!PITX2;;chr19:22193731..22193751,-!p1@ZNF208!0.78!5.00!ZNF208;;chr12:114845834..114845848,-!p5@TBX5!0.78!5.00!TBX5;;chr15:96873921..96873946,+!p1@NR2F2!0.77!152.23!NR2F2;;chr3:114866084..114866118,-!p2@ZBTB20!0.77!19.30!ZBTB20;;chr9:132427972..132428056,+!p1@PRRX2!0.76!6.43!PRRX2;;chr3:169381420..169381535,-!p1@MECOM!0.76!5.72!MECOM;;chr11:64073022..64073056,+!p1@ESRRA!0.75!60.75!ESRRA;;chr19:53636125..53636178,-!p1@ZNF415!0.75!14.29!ZNF415;;chr3:114819124..114819200,-!p3@ZBTB20!0.75!11.44!ZBTB20;;chr3:12329397..12329433,+!p2@PPARG!0.75!11.44!PPARG;;chr1:158969752..158969780,+!p6@IFI16!0.75!8.58!IFI16;;chr12:26277817..26277863,-!p2@BHLHE41!0.75!6.43!BHLHE41;;chr19:16435625..16435682,+!p1@KLF2!0.74!161.52!KLF2;;chr10:111985713..111985774,+!p2@MXI1!0.74!47.17!MXI1;;chr3:114343768..114343822,-!p1@ZBTB20!0.74!21.44!ZB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NF626;;chr17:7387524..7387597,-!p1@ZBTB4!0.33!17.87!ZBTB4;;chr1:149871135..149871169,+!p2@BOLA1!0.33!12.15!BOLA1;;chr9:32552577..32552627,-!p1@TOPORS!0.33!9.29!TOPORS;;chr5:137804484..137804498,+!p2@EGR1!0.33!7.15!EGR1;;chr21:40177892..40177903,+!p2@ETS2!0.33!7.15!ETS2;;chr5:76383017..76383068,-!p1@ZBED3!0.33!6.43!ZBED3;;chr1:27022839..27022890,+!p3@ARID1A!0.33!5.00!ARID1A;;chr2:148778973..148779035,+!p3@MBD5!0.33!4.29!MBD5;;chr19:38085633..38085706,-!p1@ZNF571!0.33!4.29!ZNF571;;chr2:145275109..145275128,-!p6@ZEB2!0.33!3.57!ZEB2;;chr19:22235279..22235301,+!p1@ZNF257!0.33!2.86!ZNF257;;chr3:150126022..150126034,+!p10@TSC22D2!0.33!2.14!TSC22D2;;chr19:44037334..44037365,+!p2@ZNF575!0.33!2.14!ZNF575;;chr1:221052700..221052730,+!p5@HLX!0.33!2.14!HLX;;chr15:83953397..83953425,-!p1@BNC1!0.33!1.43!BNC1;;chr17:46622205..46622218,-!p3@HOXB2!0.33!1.43!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!0.33!1.43!HOXB6;;chr18:56530595..56530606,+!p11@ZNF532!0.33!1.43!ZNF532;;chr19:20748557..20748568,-!p2@ZNF737!0.33!1.43!ZNF737;;chr19:20844356..20844365,-!p3@ZNF626!0.33!1.43!ZNF626;;chr10:31607702..31607755,+!p3@ZEB1!0.33!1.43!ZEB1;;chr7:108210048..108210169,-!p1@THAP5,p2@PNPLA8!0.32!57.18!THAP5;;chr12:122516646..122516668,+!p1@MLXIP!0.32!25.01!MLXIP;;chr22:30162924..30163005,-!p1@ZMAT5!0.32!22.87!ZMAT5;;chr4:10459009..10459061,-!p1@ZNF518B!0.32!16.44!ZNF518B;;chr19:57106647..57106686,+!p1@ZNF71!0.32!12.15!ZNF71;;chr9:95640300..95640345,-!p1@ZNF484!0.32!10.01!ZNF484;;chr19:12721760..12721778,+!p3@ZNF791!0.32!5.72!ZNF791;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.32!3.57!ZNF285;;chr11:64073006..64073017,+!p3@ESRRA!0.32!3.57!ESRRA;;chr12:133707172..133707202,+!p2@ZNF10!0.32!3.57!ZNF10;;chr13:74708475..74708499,-!p5@KLF12!0.32!3.57!KLF12;;chr12:52430894..52430952,+!p3@NR4A1!0.32!2.86!NR4A1;;chr1:33721873..33721898,+!p3@ZNF362!0.32!2.86!ZNF362;;chr15:96874145..96874166,+!p7@NR2F2!0.32!2.86!NR2F2;;chr8:123793959..123793977,+!p4@ZHX2!0.32!2.86!ZHX2;;chr19:56111614..56111634,+!p3@ZNF524!0.32!2.14!ZNF524;;chr3:33482052..33482116,-!p2@UBP1!0.32!2.14!UBP1;;chr15:96874216..96874236,+!p13@NR2F2!0.32!2.14!NR2F2;;chr14:89878472..89878496,-!p7@FOXN3!0.32!1.43!FOXN3;;chr15:77197753..77197772,-!p2@SCAPER!0.32!1.43!SCAPER;;chr15:96869222..96869251,+!p18@NR2F2!0.32!1.43!NR2F2;;chr16:88752889..88752921,-!p1@SNAI3!0.32!1.43!SNAI3;;chr17:46622229..46622257,-!p6@HOXB2!0.32!1.43!HOXB2;;chr10:44144240..44144252,-!p4@ZNF32!0.32!1.43!ZNF32;;chr14:45722261..45722272,-!p5@MIS18BP1!0.32!1.43!MIS18BP1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.31!187.96!ZFP36L1;;chr19:3366570..3366619,+!p1@NFIC!0.31!59.32!NFIC;;chr19:56152361..56152434,+!p1@ZNF580!0.31!49.31!ZNF580;;chr8:37553292..37553317,+!p1@ZNF703!0.31!43.60!ZNF703;;chr1:78149041..78149142,-!p1@ZZZ3!0.31!35.02!ZZZ3;;chr19:40562072..40562143,-!p1@ZNF780B!0.31!16.44!ZNF780B;;chr17:40897043..40897087,-!p1@EZH1!0.31!15.72!EZH1;;chr1:44679113..44679152,+!p1@DMAP1!0.31!14.29!DMAP1;;chr18:77867139..77867176,+!p1@ADNP2!0.31!13.58!ADNP2;;chr19:45504688..45504782,+!p1@RELB!0.31!10.72!RELB;;chr9:3525968..3526016,-!p1@RFX3!0.31!10.01!RFX3;;chr19:36909528..36909581,-!p1@ZFP82!0.31!7.86!ZFP82;;chr19:53466095..53466149,-!p1@ZNF321P,p1@ZNF816-ZNF321P,p1@ZNF816!0.31!7.15!ZNF816;;chr19:58095501..58095535,+!p1@ZIK1!0.31!5.72!ZIK1;;chr1:158979872..158979898,+!p3@IFI16!0.31!5.00!IFI16;;chr1:164528445..164528459,+!p2@PBX1!0.31!5.00!PBX1;;chr19:46272106..46272115,-!p3@SIX5!0.31!4.29!SIX5;;chr10:97890024..97890064,+!p2@ZNF518A!0.31!4.29!ZNF518A;;chr11:45168182..45168214,+!p1@ENST00000399269!0.31!4.29!PRDM11;;chr15:31618903..31618962,+!p3@KLF13!0.31!4.29!KLF13;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000948;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002081;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007100
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010227,UBERON:0010316
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520atrium%252c%2520adult%252c%2520donor1.CNhs11790.10079-102A7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520atrium%252c%2520adult%252c%2520donor1.CNhs11790.10079-102A7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/left%2520atrium%252c%2520adult%252c%2520donor1.CNhs11790.10079-102A7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/left%2520atrium%252c%2520adult%252c%2520donor1.CNhs11790.10079-102A7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/left%2520atrium%252c%2520adult%252c%2520donor1.CNhs11790.10079-102A7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10079-102A7
 |is_a=EFO:0002091;;FF:0010079
 |is_obsolete=
 |library_id=CNhs11790
+|library_id_phase_based=2:CNhs11790
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10079
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10079
 |name=left atrium, adult, donor1
 |namespace=FANTOM5
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11790,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10079-102A7;search_select_hide=table117:FF:10079-102A7
 }}

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Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0