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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008550
|DRA_sample_Accession=CAGE@SAMD00005474
|accession_numbers=CAGE;DRX008659;DRR009531;DRZ000956;DRZ002341
|HumanCAGEScanFiles=NCig10032;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/globus%2520pallidus%252c%2520adult%252c%2520donor10252.NCig10032.10161-103A8.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/globus%2520pallidus%252c%2520adult%252c%2520donor10252.NCig10032.10161-103A8.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/globus%2520pallidus%252c%2520adult%252c%2520donor10252.NCig10032.10161-103A8.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/globus%2520pallidus%252c%2520adult%252c%2520donor10252.NCig10032.10161-103A8.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008659;DRR009531;DRZ000956;DRZ002341;DRZ012306;DRZ013691
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0001875,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0006514,UBERON:0010011,UBERON:0000454
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000479,UBERON:0001875,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0006514,UBERON:0010011,UBERON:0000454
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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|expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.63!425.23!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.47!293.25!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.40!247.52!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!2.27!376.49!C11orf9;;chr8:53322304..53322340,-!p1@ST18!2.24!172.36!ST18;;chr2:145277882..145277967,-!p3@ZEB2!2.00!167.44!ZEB2;;chr10:134599649..134599653,-!p1@NKX6-2!1.93!84.47!NKX6-2;;chr16:1031762..1031781,+!p1@SOX8!1.90!77.63!SOX8;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.88!74.89!PEG3;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.20!SOX2;;chr8:53322347..53322378,-!p2@ST18!1.86!71.88!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.81!85.70!BHLHE41;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.78!59.28!POU3F3;;chr21:34398234..34398250,+!p1@OLIG2!1.73!53.26!OLIG2;;chr11:47400078..47400106,-!p1@SPI1!1.69!48.19!SPI1;;chr11:113930425..113930471,+!p1@ZBTB16!1.68!67.22!ZBTB16;;chr12:26277956..26277980,-!p1@BHLHE41!1.67!156.48!BHLHE41;;chr12:54779511..54779577,-!p5@ZNF385A!1.67!46.00!ZNF385A;;chr21:34442540..34442560,+!p2@OLIG1!1.63!42.03!OLIG1;;chr10:48355030..48355090,+!p1@ZNF488!1.55!43.81!ZNF488;;chr19:46801639..46801699,+!p1@HIF3A!1.55!34.36!HIF3A;;chr16:85932760..85932775,+!p1@IRF8!1.55!34.23!IRF8;;chr9:114287433..114287513,+!p1@ZNF483!1.53!82.55!ZNF483;;chr3:126076242..126076257,-!p1@KLF15!1.53!40.80!KLF15;;chr1:214161272..214161322,+!p1@PROX1!1.50!42.58!PROX1;;chr12:106976678..106976708,+!p2@RFX4!1.50!30.39!RFX4;;chr15:80696703..80696754,+!p1@ARNT2!1.43!33.95!ARNT2;;chr12:106976774..106976788,+!p1@RFX4!1.42!25.33!RFX4;;chr3:181429741..181429767,+!p2@SOX2!1.41!24.51!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.39!31.08!PRDM8;;chr19:13135386..13135435,+!p4@NFIX!1.38!22.86!NFIX;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.36!21.90!ZBED1;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.36!ZNF727;;chr1:61548069..61548102,+!p3@NFIA!1.34!49.29!NFIA;;chr19:30863271..30863338,+!p1@ZNF536!1.34!21.08!ZNF536;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.32!19.99!POU3F3;;chr10:64134120..64134183,+!p1@ZNF365!1.31!23.27!ZNF365;;chr14:33408072..33408114,+!p2@NPAS3!1.27!20.81!NPAS3;;chr9:77112244..77112262,+!p1@RORB!1.27!19.71!RORB;;chr8:145560111..145560165,-!p2@SCRT1!1.26!17.39!SCRT1;;chr2:95963052..95963106,+!p1@KCNIP3!1.26!17.39!KCNIP3;;chr14:33403881..33403924,+!p1@NPAS3!1.26!17.25!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!1.26!17.11!HEYL;;chr19:21512115..21512135,-!p3@ZNF708!1.25!34.09!ZNF708;;chr19:21512144..21512191,-!p2@ZNF708!1.24!75.85!ZNF708;;chr2:214016314..214016343,-!p2@IKZF2!1.24!27.38!IKZF2;;chr3:126076264..126076305,-!p2@KLF15!1.24!23.00!KLF15;;chr17:53342311..53342400,+!p1@HLF!1.24!18.62!HLF;;chr5:71803177..71803255,-!p1@ZNF366!1.24!16.57!ZNF366;;chr12:26277929..26277955,-!p3@BHLHE41!1.23!22.59!BHLHE41;;chr14:33403648..33403710,+!p3@NPAS3!1.23!15.88!NPAS3;;chr19:21512202..21512225,-!p1@ZNF708!1.21!78.04!ZNF708;;chr7:115670804..115670825,-!p1@TFEC!1.21!15.33!TFEC;;chr16:51185172..51185197,-!p1@SALL1!1.21!15.06!SALL1;;chr17:38219209..38219230,+!p1@THRA!1.19!184.14!THRA;;chr16:51185318..51185348,-!p2@SALL1!1.19!14.51!SALL1;;chr2:68592406..68592424,+!p1@PLEK!1.18!14.24!PLEK;;chr20:50159198..50159299,-!p1@NFATC2!1.17!20.13!NFATC2;;chr6:28321971..28321995,-!p1@ZNF323!1.17!13.69!ZNF323;;chr17:47439437..47439533,-!p1@ZNF652!1.16!109.80!ZNF652;;chr3:187463179..187463201,-!p2@BCL6!1.16!55.72!BCL6;;chr16:79634624..79634642,-!p1@MAF!1.16!52.16!MAF;;chr14:73360799..73360817,-!p1@DPF3!1.16!46.00!DPF3;;chr21:39870339..39870443,-!p1@ERG!1.16!13.55!ERG;;chr11:113930401..113930422,+!p3@ZBTB16!1.15!13.14!ZBTB16;;chr11:47400062..47400077,-!p2@SPI1!1.15!13.14!SPI1;;chr17:7492684..7492778,-!p2@SOX15!1.14!26.83!SOX15;;chr8:53322411..53322422,-!p6@ST18!1.14!12.87!ST18;;chr13:72441315..72441454,-!p1@DACH1!1.12!24.64!DACH1;;chr12:54778471..54778528,-!p1@ZNF385A!1.12!12.32!ZNF385A;;chr21:34442584..34442587,+!p3@OLIG1!1.12!12.18!OLIG1;;chr14:29235961..29236008,+!p1@FOXG1!1.12!12.05!FOXG1;;chr4:26344778..26344807,+!p8@RBPJ!1.11!11.91!RBPJ;;chr19:46800289..46800327,+!p2@HIF3A!1.11!11.77!HIF3A;;chr7:28725740..28725778,+!p1@CREB5!1.10!102.68!CREB5;;chr6:126070769..126070801,+!p1@HEY2!1.10!13.42!HEY2;;chr12:103351444..103351461,+!p1@ASCL1!1.10!11.64!ASCL1;;chr22:41763452..41763466,+!p2@TEF!1.10!11.50!TEF;;chr6:126112074..126112144,+!p1@NCOA7!1.09!151.01!NCOA7;;chr6:19837592..19837621,+!p1@ID4!1.09!69.27!ID4;;chr11:113930291..113930339,+!p2@ZBTB16!1.09!18.76!ZBTB16;;chr3:114819124..114819200,-!p3@ZBTB20!1.08!25.74!ZBTB20;;chr3:114343039..114343085,-!p8@ZBTB20!1.08!11.09!ZBTB20;;chr9:14314946..14314983,-!p8@NFIB!1.08!11.09!NFIB;;chr10:111987079..111987115,+!p3@MXI1!1.07!14.79!MXI1;;chr16:67198683..67198698,+!p2@HSF4!1.07!10.68!HSF4;;chr20:62680984..62680999,-!p1@SOX18!1.06!13.83!SOX18;;chr18:52989031..52989079,-!p2@TCF4!1.05!24.51!TCF4;;chr2:178128250..178128293,-!p6@NFE2L2!1.04!25.46!NFE2L2;;chr11:31832862..31832884,-!p2@PAX6!1.04!9.99!PAX6;;chrX:25034067..25034088,-!p1@ARX!1.04!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 39: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%252c%2520adult%252c%2520donor10252.CNhs12319.10161-103A8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%252c%2520adult%252c%2520donor10252.CNhs12319.10161-103A8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/globus%2520pallidus%252c%2520adult%252c%2520donor10252.CNhs12319.10161-103A8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/globus%2520pallidus%252c%2520adult%252c%2520donor10252.CNhs12319.10161-103A8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/globus%2520pallidus%252c%2520adult%252c%2520donor10252.CNhs12319.10161-103A8.hg38.nobarcode.ctss.bed.gz
|id=FF:10161-103A8
|id=FF:10161-103A8
|is_a=EFO:0002091;;FF:0000002;;FF:0010161
|is_a=EFO:0002091;;FF:0000002;;FF:0010161
|is_obsolete=
|is_obsolete=
|library_id=CNhs12319
|library_id=CNhs12319
|library_ids=CNhs12319
|library_id_phase_based=2:CNhs12319
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10161
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10161
|name=globus pallidus, adult, donor10252
|name=globus pallidus, adult, donor10252
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 61:
|profile_cagescan=NCig10032,,,
|profile_cagescan=NCig10032,,,
|profile_hcage=CNhs12319,LSID913,release011,COMPLETED
|profile_hcage=CNhs12319,LSID913,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 88: Line 101:
|top_motifs=SOX2:3.38863580268;SOX5:3.26175023398;SOX{8,9,10}:3.11365525012;NFIX:3.02826638466;GATA4:2.6578637826;FOXP1:2.65060709745;BPTF:2.40641834527;MYFfamily:2.36648273241;RREB1:2.34792829215;TOPORS:2.34085057846;AR:2.30918803502;ZFP161:2.28686887075;NHLH1,2:2.25483501794;MED-1{core}:2.24235502265;CUX2:2.22987306772;NKX3-2:2.1121614903;REST:2.09573780703;OCT4_SOX2{dimer}:2.06154132733;ATF2:2.03040423121;PATZ1:1.97895510935;PRDM1:1.90874649038;EP300:1.90040049033;GTF2I:1.89075311516;FOXD3:1.86838987527;MTF1:1.86176373749;TGIF1:1.82368012771;HIC1:1.81314028855;HBP1_HMGB_SSRP1_UBTF:1.80324486342;TFAP2B:1.78486276766;RFX2..5_RFXANK_RFXAP:1.76048628672;SOX17:1.75960432589;POU6F1:1.74257148537;EGR1..3:1.67161802721;ZBTB16:1.66119005166;XBP1:1.65225579847;DBP:1.62890744768;RBPJ:1.60600940673;FOX{I1,J2}:1.59969494193;PRRX1,2:1.57471246013;ZBTB6:1.55852130948;NKX6-1,2:1.54155992712;MTE{core}:1.53311326399;LMO2:1.53133773941;FOXO1,3,4:1.52823692258;MZF1:1.50188093012;FOXP3:1.49119364419;ZNF384:1.44675873963;STAT1,3:1.44535411228;NR3C1:1.44179289558;FOX{D1,D2}:1.41020133191;T:1.40649812434;MAZ:1.40172075434;ARID5B:1.3979182663;PAX6:1.38851032028;TLX2:1.35788057473;NANOG:1.33000563858;MYBL2:1.32146349377;PAX4:1.30761335041;CDC5L:1.29463176408;FOX{F1,F2,J1}:1.27760793285;STAT2,4,6:1.24073306072;ZNF143:1.23448915226;NRF1:1.22112914432;PDX1:1.19704485055;BREu{core}:1.18242322085;HOXA9_MEIS1:1.18217713272;SP1:1.18013183481;SMAD1..7,9:1.17317355871;FOXM1:1.13715319031;HOX{A6,A7,B6,B7}:1.12497626852;POU5F1:1.11906033319;MAFB:1.08729622025;IKZF2:1.08296444573;PAX5:1.07581185005;TFAP2{A,C}:1.06471830838;RFX1:1.05255966309;POU3F1..4:1.04374356523;KLF4:1.03312484425;PITX1..3:0.986741581352;AHR_ARNT_ARNT2:0.897755925189;SREBF1,2:0.891648402048;LEF1_TCF7_TCF7L1,2:0.847727157712;ONECUT1,2:0.740257838107;HOX{A4,D4}:0.695637131462;IRF7:0.678206865051;FOXQ1:0.657021285666;EBF1:0.644620146282;ZNF423:0.626437960986;TLX1..3_NFIC{dimer}:0.624914184203;JUN:0.606824323592;SPZ1:0.593570372961;TFDP1:0.573230045846;GTF2A1,2:0.500572295446;ALX1:0.458301721524;GFI1:0.453602807573;CREB1:0.445303477795;HAND1,2:0.410640086134;NKX2-2,8:0.407614602175;GFI1B:0.392504148089;GZF1:0.389728752757;HMGA1,2:0.3832869459;NFIL3:0.352345861483;NFY{A,B,C}:0.34577732692;POU1F1:0.290785303603;ZIC1..3:0.254751585579;GCM1,2:0.242027983458;IRF1,2:0.212768739446;CDX1,2,4:0.202627229578;CRX:0.161100594044;PBX1:0.124843418224;ADNP_IRX_SIX_ZHX:0.122837958098;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0838995873412;NFATC1..3:0.0838280297686;ZNF238:0.081381593371;NKX2-3_NKX2-5:0.0568987078565;TEF:0.0224622359739;PAX2:-0.00120292681994;FOXN1:-0.0225796078442;YY1:-0.0313239736787;HMX1:-0.0381739441351;FOXA2:-0.0432715858041;MEF2{A,B,C,D}:-0.0550449197141;RORA:-0.0573583782833;VSX1,2:-0.195608115712;SPI1:-0.198072853009;ATF5_CREB3:-0.219850381317;LHX3,4:-0.221394739147;HSF1,2:-0.252374694491;XCPE1{core}:-0.261431832707;MYOD1:-0.266495262944;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.26783642884;ETS1,2:-0.302914758788;ZEB1:-0.31682025285;TFCP2:-0.331998053637;AIRE:-0.338575861186;SPIB:-0.380948185239;UFEwm:-0.394634825587;CEBPA,B_DDIT3:-0.410057465884;IKZF1:-0.428002637207;NFE2L2:-0.441070239965;NR5A1,2:-0.452963590222;DMAP1_NCOR{1,2}_SMARC:-0.466952187012;HNF4A_NR2F1,2:-0.495397745185;NKX2-1,4:-0.505024699546;TBX4,5:-0.575188049063;ESRRA:-0.588699532677;RXR{A,B,G}:-0.591039603629;PAX1,9:-0.595345010158;FOXL1:-0.632296938729;bHLH_family:-0.634558765847;EVI1:-0.636427281812;GATA6:-0.640724453072;NFE2:-0.651617279239;ATF4:-0.687083415941;ELF1,2,4:-0.731386100504;ELK1,4_GABP{A,B1}:-0.732690890708;TFAP4:-0.73715498797;TP53:-0.780367988357;NKX3-1:-0.784204738282;NANOG{mouse}:-0.811703105649;ALX4:-0.846077385603;NFE2L1:-0.854436263454;HNF1A:-0.866333781899;TEAD1:-0.89269964287;SNAI1..3:-0.900692724312;E2F1..5:-0.919832872688;FOSL2:-0.9618255667;HIF1A:-0.96789673244;NR1H4:-0.976663333536;NFKB1_REL_RELA:-1.04278731373;FOS_FOS{B,L1}_JUN{B,D}:-1.07454896316;ATF6:-1.08060199898;HLF:-1.09275215251;RUNX1..3:-1.11343651797;PAX8:-1.12805984378;BACH2:-1.14527176013;PAX3,7:-1.1777961926;MYB:-1.20313722604;TBP:-1.25272808228;NR6A1:-1.27545290804;TAL1_TCF{3,4,12}:-1.32541886397;SRF:-1.35038205964;ZNF148:-1.38577492901;RXRA_VDR{dimer}:-1.42286201129;POU2F1..3:-1.43750122206;STAT5{A,B}:-1.46608243054;ESR1:-1.53636630097;HES1:-1.701134628;GLI1..3:-1.78444732548;EN1,2:-2.10145246423;PPARG:-2.65987123957;HOX{A5,B5}:-2.76279235883
|top_motifs=SOX2:3.38863580268;SOX5:3.26175023398;SOX{8,9,10}:3.11365525012;NFIX:3.02826638466;GATA4:2.6578637826;FOXP1:2.65060709745;BPTF:2.40641834527;MYFfamily:2.36648273241;RREB1:2.34792829215;TOPORS:2.34085057846;AR:2.30918803502;ZFP161:2.28686887075;NHLH1,2:2.25483501794;MED-1{core}:2.24235502265;CUX2:2.22987306772;NKX3-2:2.1121614903;REST:2.09573780703;OCT4_SOX2{dimer}:2.06154132733;ATF2:2.03040423121;PATZ1:1.97895510935;PRDM1:1.90874649038;EP300:1.90040049033;GTF2I:1.89075311516;FOXD3:1.86838987527;MTF1:1.86176373749;TGIF1:1.82368012771;HIC1:1.81314028855;HBP1_HMGB_SSRP1_UBTF:1.80324486342;TFAP2B:1.78486276766;RFX2..5_RFXANK_RFXAP:1.76048628672;SOX17:1.75960432589;POU6F1:1.74257148537;EGR1..3:1.67161802721;ZBTB16:1.66119005166;XBP1:1.65225579847;DBP:1.62890744768;RBPJ:1.60600940673;FOX{I1,J2}:1.59969494193;PRRX1,2:1.57471246013;ZBTB6:1.55852130948;NKX6-1,2:1.54155992712;MTE{core}:1.53311326399;LMO2:1.53133773941;FOXO1,3,4:1.52823692258;MZF1:1.50188093012;FOXP3:1.49119364419;ZNF384:1.44675873963;STAT1,3:1.44535411228;NR3C1:1.44179289558;FOX{D1,D2}:1.41020133191;T:1.40649812434;MAZ:1.40172075434;ARID5B:1.3979182663;PAX6:1.38851032028;TLX2:1.35788057473;NANOG:1.33000563858;MYBL2:1.32146349377;PAX4:1.30761335041;CDC5L:1.29463176408;FOX{F1,F2,J1}:1.27760793285;STAT2,4,6:1.24073306072;ZNF143:1.23448915226;NRF1:1.22112914432;PDX1:1.19704485055;BREu{core}:1.18242322085;HOXA9_MEIS1:1.18217713272;SP1:1.18013183481;SMAD1..7,9:1.17317355871;FOXM1:1.13715319031;HOX{A6,A7,B6,B7}:1.12497626852;POU5F1:1.11906033319;MAFB:1.08729622025;IKZF2:1.08296444573;PAX5:1.07581185005;TFAP2{A,C}:1.06471830838;RFX1:1.05255966309;POU3F1..4:1.04374356523;KLF4:1.03312484425;PITX1..3:0.986741581352;AHR_ARNT_ARNT2:0.897755925189;SREBF1,2:0.891648402048;LEF1_TCF7_TCF7L1,2:0.847727157712;ONECUT1,2:0.740257838107;HOX{A4,D4}:0.695637131462;IRF7:0.678206865051;FOXQ1:0.657021285666;EBF1:0.644620146282;ZNF423:0.626437960986;TLX1..3_NFIC{dimer}:0.624914184203;JUN:0.606824323592;SPZ1:0.593570372961;TFDP1:0.573230045846;GTF2A1,2:0.500572295446;ALX1:0.458301721524;GFI1:0.453602807573;CREB1:0.445303477795;HAND1,2:0.410640086134;NKX2-2,8:0.407614602175;GFI1B:0.392504148089;GZF1:0.389728752757;HMGA1,2:0.3832869459;NFIL3:0.352345861483;NFY{A,B,C}:0.34577732692;POU1F1:0.290785303603;ZIC1..3:0.254751585579;GCM1,2:0.242027983458;IRF1,2:0.212768739446;CDX1,2,4:0.202627229578;CRX:0.161100594044;PBX1:0.124843418224;ADNP_IRX_SIX_ZHX:0.122837958098;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0838995873412;NFATC1..3:0.0838280297686;ZNF238:0.081381593371;NKX2-3_NKX2-5:0.0568987078565;TEF:0.0224622359739;PAX2:-0.00120292681994;FOXN1:-0.0225796078442;YY1:-0.0313239736787;HMX1:-0.0381739441351;FOXA2:-0.0432715858041;MEF2{A,B,C,D}:-0.0550449197141;RORA:-0.0573583782833;VSX1,2:-0.195608115712;SPI1:-0.198072853009;ATF5_CREB3:-0.219850381317;LHX3,4:-0.221394739147;HSF1,2:-0.252374694491;XCPE1{core}:-0.261431832707;MYOD1:-0.266495262944;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.26783642884;ETS1,2:-0.302914758788;ZEB1:-0.31682025285;TFCP2:-0.331998053637;AIRE:-0.338575861186;SPIB:-0.380948185239;UFEwm:-0.394634825587;CEBPA,B_DDIT3:-0.410057465884;IKZF1:-0.428002637207;NFE2L2:-0.441070239965;NR5A1,2:-0.452963590222;DMAP1_NCOR{1,2}_SMARC:-0.466952187012;HNF4A_NR2F1,2:-0.495397745185;NKX2-1,4:-0.505024699546;TBX4,5:-0.575188049063;ESRRA:-0.588699532677;RXR{A,B,G}:-0.591039603629;PAX1,9:-0.595345010158;FOXL1:-0.632296938729;bHLH_family:-0.634558765847;EVI1:-0.636427281812;GATA6:-0.640724453072;NFE2:-0.651617279239;ATF4:-0.687083415941;ELF1,2,4:-0.731386100504;ELK1,4_GABP{A,B1}:-0.732690890708;TFAP4:-0.73715498797;TP53:-0.780367988357;NKX3-1:-0.784204738282;NANOG{mouse}:-0.811703105649;ALX4:-0.846077385603;NFE2L1:-0.854436263454;HNF1A:-0.866333781899;TEAD1:-0.89269964287;SNAI1..3:-0.900692724312;E2F1..5:-0.919832872688;FOSL2:-0.9618255667;HIF1A:-0.96789673244;NR1H4:-0.976663333536;NFKB1_REL_RELA:-1.04278731373;FOS_FOS{B,L1}_JUN{B,D}:-1.07454896316;ATF6:-1.08060199898;HLF:-1.09275215251;RUNX1..3:-1.11343651797;PAX8:-1.12805984378;BACH2:-1.14527176013;PAX3,7:-1.1777961926;MYB:-1.20313722604;TBP:-1.25272808228;NR6A1:-1.27545290804;TAL1_TCF{3,4,12}:-1.32541886397;SRF:-1.35038205964;ZNF148:-1.38577492901;RXRA_VDR{dimer}:-1.42286201129;POU2F1..3:-1.43750122206;STAT5{A,B}:-1.46608243054;ESR1:-1.53636630097;HES1:-1.701134628;GLI1..3:-1.78444732548;EN1,2:-2.10145246423;PPARG:-2.65987123957;HOX{A5,B5}:-2.76279235883
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10161-103A8;search_select_hide=table117:FF:10161-103A8
}}
}}

Latest revision as of 12:23, 3 June 2020

Name:globus pallidus, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12319
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueglobus pallidus
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005474
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12319 CAGE DRX008659 DRR009531
Accession ID Hg19

Library idBAMCTSS
CNhs12319 DRZ000956 DRZ002341
Accession ID Hg38

Library idBAMCTSS
CNhs12319 DRZ012306 DRZ013691
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10032downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.149
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis1.014
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.277
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0557
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.19
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0869
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.00671
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.186
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0557
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0557
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.0557
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.422
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0161
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.279
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.795
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.149
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0557
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.182
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0557
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.122
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0557
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.933
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0557
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.248
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.149
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00768
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0557
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0557
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.226
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0557
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.19
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0557
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0414
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.522
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.105
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.149
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.459
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0557
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.374
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.227
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0557
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.149
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.387
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.105
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.26
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.26
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0.19
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.708
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.105
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.349
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0557
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12319

Jaspar motifP-value
MA0002.20.0482
MA0003.10.193
MA0004.10.372
MA0006.10.354
MA0007.10.704
MA0009.10.108
MA0014.10.757
MA0017.10.00173
MA0018.20.674
MA0019.10.571
MA0024.10.459
MA0025.10.546
MA0027.10.664
MA0028.10.102
MA0029.10.092
MA0030.10.172
MA0031.10.111
MA0035.20.0165
MA0038.10.309
MA0039.20.237
MA0040.10.946
MA0041.10.423
MA0042.10.894
MA0043.10.798
MA0046.10.00414
MA0047.20.537
MA0048.10.174
MA0050.10.273
MA0051.10.238
MA0052.10.343
MA0055.10.00241
MA0057.10.827
MA0058.10.475
MA0059.10.099
MA0060.10.233
MA0061.10.00246
MA0062.20.009
MA0065.27.65371e-4
MA0066.10.00641
MA0067.10.884
MA0068.10.71
MA0069.10.817
MA0070.10.578
MA0071.10.0177
MA0072.10.307
MA0073.10.55
MA0074.10.253
MA0076.10.194
MA0077.10.00384
MA0078.10.692
MA0079.20.848
MA0080.22.82719e-5
MA0081.10.0347
MA0083.10.00795
MA0084.10.183
MA0087.10.479
MA0088.10.444
MA0090.10.233
MA0091.10.598
MA0092.10.225
MA0093.10.452
MA0099.26.86362e-22
MA0100.10.52
MA0101.10.00249
MA0102.20.223
MA0103.10.0356
MA0104.20.444
MA0105.11.17671e-4
MA0106.10.0273
MA0107.10.00138
MA0108.20.0514
MA0111.10.769
MA0112.29.48882e-4
MA0113.10.92
MA0114.10.00403
MA0115.10.793
MA0116.10.00237
MA0117.10.698
MA0119.10.282
MA0122.10.701
MA0124.10.97
MA0125.10.528
MA0131.10.879
MA0135.10.134
MA0136.11.11132e-8
MA0137.20.0168
MA0138.20.768
MA0139.10.376
MA0140.10.0308
MA0141.10.00411
MA0142.10.583
MA0143.10.0611
MA0144.10.831
MA0145.10.267
MA0146.10.0432
MA0147.10.244
MA0148.10.432
MA0149.10.0143
MA0150.14.45801e-5
MA0152.10.469
MA0153.10.245
MA0154.10.0404
MA0155.10.556
MA0156.11.81775e-5
MA0157.10.547
MA0159.10.0102
MA0160.10.0242
MA0162.10.135
MA0163.13.4145e-7
MA0164.10.737
MA0258.10.0237
MA0259.10.75



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12319

Novel motifP-value
10.0834
100.0661
1000.53
1010.438
1020.998
1030.0196
1040.118
1050.148
1060.0188
1070.13
1080.977
1090.00143
110.0113
1100.0544
1110.295
1120.265
1130.309
1140.171
1150.852
1160.234
1170.0164
1180.281
1190.391
120.521
1200.188
1210.433
1220.911
1230.16
1240.522
1250.64
1260.0627
1270.396
1280.171
1290.485
130.00519
1300.252
1310.0159
1320.383
1330.1
1340.643
1350.395
1360.00197
1370.874
1380.806
1390.39
140.931
1400.61
1410.461
1420.389
1430.0395
1440.646
1450.423
1460.69
1470.837
1480.48
1490.149
150.0708
1500.104
1510.825
1520.0726
1530.805
1540.264
1550.985
1560.434
1570.428
1580.117
1590.00517
160.0216
1600.209
1610.355
1620.69
1630.717
1640.0207
1650.176
1660.991
1670.805
1680.675
1690.0234
170.0924
180.0417
190.281
20.857
200.226
210.0646
220.225
230.347
240.0276
250.543
260.00706
270.363
280.882
290.00291
30.0687
300.755
310.893
320.00859
330.0587
340.677
350.54
360.321
370.0339
380.552
390.311
40.979
400.094
410.242
420.292
430.131
440.0593
450.642
460.04
470.113
480.0904
490.403
50.915
500.544
510.34
520.557
530.349
540.558
550.758
560.619
570.397
580.302
590.0455
60.615
600.0816
610.161
620.16
630.386
640.11
650.293
660.113
670.327
680.274
690.288
70.111
700.0674
710.00919
720.213
730.0289
740.879
750.0235
760.37
770.113
780.00344
790.3
80.0539
800.306
810.486
820.623
830.0505
840.579
850.409
860.198
871.33267e-4
880.627
890.121
90.314
900.08
910.86
920.375
930.765
940.155
950.0128
960.707
970.743
980.253
990.523



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12319


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000479 (tissue)
0001875 (globus pallidus)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0006514 (pallidum)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010161 (human globus pallidus - adult donor sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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