FF:10169-103B7: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	hippocampus - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13795
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	hippocampus
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005564

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13795		CAGE		DRX008667		DRR009539

Accession ID Hg19

Library id		BAM		CTSS
CNhs13795		DRZ000964		DRZ002349

Accession ID Hg38

Library id		BAM		CTSS
CNhs13795		DRZ012314		DRZ013699

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.413
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.782
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.382
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.413
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.413
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.254
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.254
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.254
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.121
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.726
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0052
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.119
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.813
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.174
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.254
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.867
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.817
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.413
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.621
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.169
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.621
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.575
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.254
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.62
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.773
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.697
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.621
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.53
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.413
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.53
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13795

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0624
MA0003.1	MA0003.1	0.285
MA0004.1	MA0004.1	0.323
MA0006.1	MA0006.1	0.215
MA0007.1	MA0007.1	0.313
MA0009.1	MA0009.1	0.268
MA0014.1	MA0014.1	0.616
MA0017.1	MA0017.1	0.00671
MA0018.2	MA0018.2	0.278
MA0019.1	MA0019.1	0.497
MA0024.1	MA0024.1	0.684
MA0025.1	MA0025.1	0.781
MA0027.1	MA0027.1	0.568
MA0028.1	MA0028.1	0.0202
MA0029.1	MA0029.1	0.0546
MA0030.1	MA0030.1	0.714
MA0031.1	MA0031.1	0.285
MA0035.2	MA0035.2	0.0097
MA0038.1	MA0038.1	0.474
MA0039.2	MA0039.2	0.0767
MA0040.1	MA0040.1	0.611
MA0041.1	MA0041.1	0.475
MA0042.1	MA0042.1	0.924
MA0043.1	MA0043.1	0.714
MA0046.1	MA0046.1	0.00235
MA0047.2	MA0047.2	0.0195
MA0048.1	MA0048.1	0.0986
MA0050.1	MA0050.1	0.0199
MA0051.1	MA0051.1	0.0847
MA0052.1	MA0052.1	0.916
MA0055.1	MA0055.1	0.00112
MA0057.1	MA0057.1	0.81
MA0058.1	MA0058.1	0.23
MA0059.1	MA0059.1	0.097
MA0060.1	MA0060.1	0.689
MA0061.1	MA0061.1	0.00783
MA0062.2	MA0062.2	2.24028e-4
MA0065.2	MA0065.2	7.47772e-4
MA0066.1	MA0066.1	0.0278
MA0067.1	MA0067.1	0.98
MA0068.1	MA0068.1	0.853
MA0069.1	MA0069.1	0.44
MA0070.1	MA0070.1	0.73
MA0071.1	MA0071.1	0.00661
MA0072.1	MA0072.1	0.146
MA0073.1	MA0073.1	0.443
MA0074.1	MA0074.1	0.18
MA0076.1	MA0076.1	0.0445
MA0077.1	MA0077.1	0.194
MA0078.1	MA0078.1	0.862
MA0079.2	MA0079.2	0.997
MA0080.2	MA0080.2	7.9548e-9
MA0081.1	MA0081.1	0.0336
MA0083.1	MA0083.1	0.0361
MA0084.1	MA0084.1	0.895
MA0087.1	MA0087.1	0.722
MA0088.1	MA0088.1	0.208
MA0090.1	MA0090.1	0.211
MA0091.1	MA0091.1	0.637
MA0092.1	MA0092.1	0.426
MA0093.1	MA0093.1	0.311
MA0099.2	MA0099.2	8.78978e-19
MA0100.1	MA0100.1	0.63
MA0101.1	MA0101.1	0.00101
MA0102.2	MA0102.2	0.188
MA0103.1	MA0103.1	0.173
MA0104.2	MA0104.2	0.541
MA0105.1	MA0105.1	0.00812
MA0106.1	MA0106.1	0.0267
MA0107.1	MA0107.1	0.00243
MA0108.2	MA0108.2	0.404
MA0111.1	MA0111.1	0.58
MA0112.2	MA0112.2	0.0026
MA0113.1	MA0113.1	0.604
MA0114.1	MA0114.1	0.00301
MA0115.1	MA0115.1	0.514
MA0116.1	MA0116.1	0.0145
MA0117.1	MA0117.1	0.949
MA0119.1	MA0119.1	0.137
MA0122.1	MA0122.1	0.426
MA0124.1	MA0124.1	0.605
MA0125.1	MA0125.1	0.123
MA0131.1	MA0131.1	0.662
MA0135.1	MA0135.1	0.0292
MA0136.1	MA0136.1	2.66059e-13
MA0137.2	MA0137.2	0.793
MA0138.2	MA0138.2	0.225
MA0139.1	MA0139.1	0.338
MA0140.1	MA0140.1	6.78724e-4
MA0141.1	MA0141.1	0.0102
MA0142.1	MA0142.1	0.473
MA0143.1	MA0143.1	0.31
MA0144.1	MA0144.1	0.331
MA0145.1	MA0145.1	0.187
MA0146.1	MA0146.1	0.00527
MA0147.1	MA0147.1	0.372
MA0148.1	MA0148.1	0.0238
MA0149.1	MA0149.1	0.0579
MA0150.1	MA0150.1	8.68483e-5
MA0152.1	MA0152.1	0.393
MA0153.1	MA0153.1	0.145
MA0154.1	MA0154.1	0.0578
MA0155.1	MA0155.1	0.582
MA0156.1	MA0156.1	2.83896e-10
MA0157.1	MA0157.1	0.178
MA0159.1	MA0159.1	0.00757
MA0160.1	MA0160.1	0.0129
MA0162.1	MA0162.1	0.131
MA0163.1	MA0163.1	1.21673e-4
MA0164.1	MA0164.1	0.583
MA0258.1	MA0258.1	0.0188
MA0259.1	MA0259.1	0.869

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13795

Novel motif	Logo	P-value
1	1	0.0771
10	10	0.0521
100	100	0.368
101	101	0.241
102	102	0.897
103	103	0.221
104	104	0.168
105	105	0.136
106	106	0.0302
107	107	0.105
108	108	0.981
109	109	0.00146
11	11	0.0124
110	110	0.0493
111	111	0.281
112	112	0.594
113	113	0.378
114	114	0.325
115	115	0.854
116	116	0.063
117	117	0.00618
118	118	0.123
119	119	0.223
12	12	0.505
120	120	0.23
121	121	0.0772
122	122	0.725
123	123	0.897
124	124	0.0282
125	125	0.348
126	126	0.0223
127	127	0.425
128	128	0.206
129	129	0.485
13	13	6.77604e-4
130	130	0.135
131	131	0.0836
132	132	0.677
133	133	0.0012
134	134	0.366
135	135	0.0659
136	136	5.85162e-4
137	137	0.868
138	138	0.892
139	139	0.15
14	14	0.808
140	140	0.503
141	141	0.514
142	142	0.666
143	143	0.0926
144	144	0.79
145	145	0.0913
146	146	0.331
147	147	0.795
148	148	0.265
149	149	0.205
15	15	0.111
150	150	0.134
151	151	0.568
152	152	0.0561
153	153	0.609
154	154	0.313
155	155	0.727
156	156	0.339
157	157	0.406
158	158	0.233
159	159	0.0274
16	16	0.0494
160	160	0.275
161	161	0.251
162	162	0.707
163	163	0.918
164	164	0.0132
165	165	0.0484
166	166	0.696
167	167	0.685
168	168	0.295
169	169	0.0132
17	17	0.113
18	18	0.159
19	19	0.187
2	2	0.73
20	20	0.133
21	21	0.0773
22	22	0.152
23	23	0.401
24	24	0.0152
25	25	0.605
26	26	3.36067e-5
27	27	0.989
28	28	0.744
29	29	0.0091
3	3	0.0544
30	30	0.922
31	31	0.957
32	32	0.0416
33	33	0.0423
34	34	0.7
35	35	0.733
36	36	0.289
37	37	0.0305
38	38	0.261
39	39	0.249
4	4	0.895
40	40	0.0364
41	41	0.441
42	42	0.277
43	43	0.121
44	44	0.154
45	45	0.591
46	46	0.0738
47	47	0.0541
48	48	0.0377
49	49	0.21
5	5	0.78
50	50	0.173
51	51	0.523
52	52	0.536
53	53	0.836
54	54	0.348
55	55	0.771
56	56	0.53
57	57	0.41
58	58	0.406
59	59	0.0394
6	6	0.917
60	60	0.0755
61	61	0.049
62	62	0.268
63	63	0.163
64	64	0.191
65	65	0.224
66	66	0.121
67	67	0.224
68	68	0.149
69	69	0.559
7	7	0.0565
70	70	0.037
71	71	0.0127
72	72	0.311
73	73	0.0203
74	74	0.917
75	75	0.0191
76	76	0.42
77	77	0.125
78	78	4.49413e-4
79	79	0.338
8	8	0.108
80	80	0.436
81	81	0.825
82	82	0.682
83	83	0.012
84	84	0.535
85	85	0.272
86	86	0.154
87	87	8.1062e-5
88	88	0.766
89	89	0.5
9	9	0.363
90	90	0.265
91	91	0.843
92	92	0.841
93	93	0.497
94	94	0.426
95	95	0.00833
96	96	0.775
97	97	0.599
98	98	0.351
99	99	0.43

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13795

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0010153 hippocampus - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001954 (Ammon's horn)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0003022 (lobe parts of cerebral cortex)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0002421 (hippocampal formation)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0000349 (limbic system)
0002600 (limbic lobe)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010153 (hippocampus - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005564
+|accession_numbers=CAGE;DRX008667;DRR009539;DRZ000964;DRZ002349;DRZ012314;DRZ013699
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001954,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0003022,UBERON:0010317,UBERON:0001017,UBERON:0002421,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0000349,UBERON:0002600
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.47!295.03!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.42!264.02!TSC22D4;;chr15:80733570..80733659,+!p2@ARNT2!2.24!170.97!ARNT2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.15!139.96!PEG3;;chr4:81118647..81118666,+!p1@PRDM8!2.08!155.87!PRDM8;;chr17:37764128..37764258,-!p1@NEUROD2!2.05!110.54!NEUROD2;;chr7:31380292..31380351,-!p1@NEUROD6!2.01!100.20!NEUROD6;;chr9:114287433..114287513,+!p1@ZNF483!1.96!223.46!ZNF483;;chr10:48355030..48355090,+!p1@ZNF488!1.96!113.72!ZNF488;;chr4:57547454..57547469,-!p1@HOPX!1.89!77.14!HOPX;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.75!SOX2;;chr21:34442540..34442560,+!p2@OLIG1!1.82!64.41!OLIG1;;chr12:106976774..106976788,+!p1@RFX4!1.81!63.62!RFX4;;chr2:2334997..2335053,-!p1@MYT1L!1.78!59.64!MYT1L;;chr14:29235961..29236008,+!p1@FOXG1!1.74!54.08!FOXG1;;chr22:38380543..38380569,-!p1@SOX10!1.73!53.28!SOX10;;chr10:119302232..119302265,+!p1@EMX2!1.69!48.51!EMX2;;chr12:106976678..106976708,+!p2@RFX4!1.69!47.71!RFX4;;chrX:25034067..25034088,-!p1@ARX!1.68!46.92!ARX;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.66!44.53!SMARCE1;;chr17:53342311..53342400,+!p1@HLF!1.64!48.51!HLF;;chr2:60781201..60781258,-!p3@BCL11A!1.63!42.15!BCL11A;;chr11:61520075..61520136,+!p1@C11orf9!1.62!84.29!C11orf9;;chr14:29234581..29234601,+!p2@FOXG1!1.62!40.56!FOXG1;;chr21:34398234..34398250,+!p1@OLIG2!1.59!38.17!OLIG2;;chrX:85969626..85969664,+!p1@DACH2!1.58!37.38!DACH2;;chr9:77112244..77112262,+!p1@RORB!1.56!38.97!RORB;;chr1:214161272..214161322,+!p1@PROX1!1.55!48.51!PROX1;;chr14:33403881..33403924,+!p1@NPAS3!1.54!33.40!NPAS3;;chr15:80735246..80735321,+!p3@ARNT2!1.54!33.40!ARNT2;;chr2:145277882..145277967,-!p3@ZEB2!1.52!54.87!ZEB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.52!46.12!CSRNP3;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.51!31.01!POU3F3;;chr12:26277817..26277863,-!p2@BHLHE41!1.49!40.56!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.48!41.35!ZBTB16;;chr11:8102846..8102892,+!p1@TUB!1.47!38.97!TUB;;chr11:31832658..31832681,-!p1@PAX6!1.47!28.63!PAX6;;chr1:244219775..244219893,+!p2@ZNF238!1.46!37.38!ZNF238;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.04!HIF3A;;chr3:181429741..181429767,+!p2@SOX2!1.45!27.04!SOX2;;chr9:126774018..126774055,+!p1@LHX2!1.45!27.04!LHX2;;chr8:106330656..106330684,+!p1@ZFPM2!1.44!68.39!ZFPM2;;chr8:53322304..53322340,-!p1@ST18!1.44!26.24!ST18;;chr8:65492915..65492932,+!p1@BHLHE22!1.42!25.45!BHLHE22;;chr7:63505799..63505904,+!p1@ZNF727!1.41!24.65!ZNF727;;chr15:80696703..80696754,+!p1@ARNT2!1.38!30.22!ARNT2;;chr19:13135582..13135600,+!p3@NFIX!1.38!23.06!NFIX;;chr14:33403648..33403710,+!p3@NPAS3!1.37!22.27!NPAS3;;chr2:162272785..162272836,+!p1@TBR1!1.37!22.27!TBR1;;chr2:95963052..95963106,+!p1@KCNIP3!1.32!19.88!KCNIP3;;chr19:46800289..46800327,+!p2@HIF3A!1.32!19.88!HIF3A;;chr8:106330696..106330719,+!p2@ZFPM2!1.31!24.65!ZFPM2;;chr3:114173720..114173794,-!p6@ZBTB20!1.29!18.29!ZBTB20;;chr11:31832862..31832884,-!p2@PAX6!1.29!18.29!PAX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.28!64.41!BHLHE41;;chr3:147127142..147127168,+!p1@ZIC1!1.27!17.50!ZIC1;;chr19:57352109..57352153,-!p2@ZIM2!1.27!17.50!ZIM2;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.25!16.70!POU3F3;;chr10:64134120..64134183,+!p1@ZNF365!1.24!19.88!ZNF365;;chr14:29237009..29237049,+!p4@FOXG1!1.23!15.90!FOXG1;;chr4:57522166..57522260,-!p2@HOPX!1.21!17.50!HOPX;;chr17:38219209..38219230,+!p1@THRA!1.19!185.29!THRA;;chr22:41763452..41763466,+!p2@TEF!1.19!14.31!TEF;;chr7:50344289..50344323,+!p1@IKZF1!1.19!14.31!IKZF1;;chr9:126773880..126773895,+!p2@LHX2!1.19!14.31!LHX2;;chr12:103351444..103351461,+!p1@ASCL1!1.19!14.31!ASCL1;;chr6:19837592..19837621,+!p1@ID4!1.16!81.11!ID4;;chr11:47400078..47400106,-!p1@SPI1!1.16!13.52!SPI1;;chr12:54779511..54779577,-!p5@ZNF385A!1.16!13.52!ZNF385A;;chr4:57522598..57522664,-!p3@HOPX!1.16!13.52!HOPX;;chr19:38085768..38085821,+!p1@ZNF540!1.15!19.88!ZNF540;;chr17:70117153..70117174,+!p1@SOX9!1.14!129.62!SOX9;;chr19:30863271..30863338,+!p1@ZNF536!1.14!12.72!ZNF536;;chr8:65492973..65492989,+!p5@BHLHE22!1.14!12.72!BHLHE22;;chr9:2159850..2159880,+!p14@SMARCA2!1.14!12.72!SMARCA2;;chr3:141105705..141105770,+!p4@ZBTB38!1.13!15.11!ZBTB38;;chr4:57522674..57522699,-!p5@HOPX!1.11!11.93!HOPX;;chr14:58798013..58798071,+!p2@ARID4A!1.11!11.93!ARID4A;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.93!IRF8;;chr8:22550530..22550609,-!p2@EGR3!1.11!11.93!EGR3;;chr8:53322347..53322378,-!p2@ST18!1.11!11.93!ST18;;chr1:244214577..244214593,+!p1@ZNF238!1.11!11.93!ZNF238;;chr20:3388541..3388575,-!p2@C20orf194!1.10!45.33!C20orf194;;chr3:114819124..114819200,-!p3@ZBTB20!1.10!27.04!ZBTB20;;chr1:151032860..151032918,+!p1@MLLT11!1.08!132.80!MLLT11;;chr21:34442584..34442587,+!p3@OLIG1!1.08!11.13!OLIG1;;chr2:42721205..42721307,+!p4@MTA3!1.08!11.13!MTA3;;chr3:147127177..147127194,+!p2@ZIC1!1.08!11.13!ZIC1;;chr9:126774058..126774081,+!p3@LHX2!1.08!11.13!LHX2;;chr10:134599649..134599653,-!p1@NKX6-2!1.08!11.13!NKX6-2;;chr12:24102576..241026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TV1!0.41!1.59!ETV1;;chr7:20826426..20826432,-!p2@SP8!0.41!1.59!SP8;;chr7:28220506..28220552,-!p3@JAZF1!0.41!1.59!JAZF1;;chr7:73038889..73038905,-!p3@MLXIPL!0.41!1.59!MLXIPL;;chr7:96634850..96634874,+!p3@DLX6!0.41!1.59!DLX6;;chr8:116673894..116673913,-!p12@TRPS1!0.41!1.59!TRPS1;;chr8:22550509..22550526,-!p6@EGR3!0.41!1.59!EGR3;;chr8:22550825..22550844,-!p7@EGR3!0.41!1.59!EGR3;;chr8:28748765..28748785,+!p10@HMBOX1!0.41!1.59!HMBOX1;;chr8:53162037..53162058,-!p5@ST18!0.41!1.59!ST18;;chr8:53166916..53166925,-!p10@ST18!0.41!1.59!ST18;;chr8:53322411..53322422,-!p6@ST18!0.41!1.59!ST18;;chr8:86089498..86089519,+!p6@E2F5!0.41!1.59!E2F5;;chr8:93107451..93107468,-!p2@RUNX1T1!0.41!1.59!RUNX1T1;;chr9:115819058..115819082,-!p2@ZFP37!0.41!1.59!ZFP37;;chr9:14313641..14313652,-!p13@NFIB!0.41!1.59!NFIB;;chr9:14314642..14314645,-!p16@NFIB!0.41!1.59!NFIB;;chr9:94173193..94173206,-!p5@NFIL3!0.41!1.59!NFIL3;;chrX:84498946..84498955,+!p4@ZNF711!0.41!1.59!ZNF711;;chrX:147582130..147582147,+!p3@AFF2!0.41!1.59!AFF2;;chr9:73028433..73028444,-!p15@KLF9!0.41!1.59!KLF9;;chr14:99738059..99738086,-!p2@BCL11B!0.41!1.59!BCL11B;;chr14:99738138..99738163,-!p1@BCL11B!0.41!1.59!BCL11B;;chr15:61521462..61521482,-!p4@RORA!0.41!1.59!RORA;;chr15:61521495..61521506,-!p5@RORA!0.41!1.59!RORA;;chr15:66994523..66994541,+!p5@SMAD6!0.41!1.59!SMAD6;;chr15:77197723..77197734,-!p4@SCAPER!0.41!1.59!SCAPER;;chr15:80696305..80696320,+!p10@ARNT2!0.41!1.59!ARNT2;;chr15:90544182..90544195,+!p7@ZNF710!0.41!1.59!ZNF710;;chr15:96877047..96877056,+!p39@NR2F2!0.41!1.59!NR2F2;;chr16:51185573..51185593,-!p3@SALL1!0.41!1.59!SALL1;;chr16:54964899..54964914,+!p2@IRX5!0.41!1.59!IRX5;;chr16:79634447..79634462,-!p8@MAF!0.41!1.59!MAF;;chr16:79634464..79634493,-!p5@MAF!0.41!1.59!MAF;;chr16:88752836..88752852,-!p3@SNAI3!0.41!1.59!SNAI3;;chr17:38244601..38244612,+!p6@THRA!0.41!1.59!THRA;;chr17:4883914..4883924,-!p7@CAMTA2!0.41!1.59!CAMTA2;;chr17:53342451..53342471,+!p4@HLF!0.41!1.59!HLF;;chr17:7197911..7197964,-!p1@YBX2!0.41!1.59!YBX2;;chr17:7387459..7387470,-!p10@ZBTB4!0.41!1.59!ZBTB4;;chr18:45935720..45935772,-!p1@ZBTB7C!0.41!1.59!ZBTB7C;;chr18:52969674..52969685,-!p24@TCF4!0.41!1.59!TCF4;;chr18:52988952..52988965,-!p23@TCF4!0.41!1.59!TCF4;;chr18:53068982..53068993,-!p20@TCF4!0.41!1.59!TCF4;;chr18:53069219..53069253,-!p35@TCF4!0.41!1.59!TCF4;;chr18:53069419..53069450,-!p34@TCF4!0.41!1.59!TCF4;;chr18:53253077..53253100,-!p46@TCF4!0.41!1.59!TCF4;;chr18:56532079..56532095,+!p8@ZNF532!0.41!1.59!ZNF532;;chr19:12444399..12444415,-!p5@ZNF563!0.41!1.59!ZNF563;;chr19:13135369..13135375,+!p21@NFIX!0.41!1.59!NFIX;;chr19:13135790..13135804,+!p26@NFIX!0.41!1.59!NFIX;;chr19:13135914..13135942,+!p19@NFIX!0.41!1.59!NFIX;;chr19:13136057..13136085,+!p11@NFIX!0.41!1.59!NFIX;;chr19:16435423..16435484,+!p5@KLF2!0.41!1.59!KLF2;;chr19:1863887..1863918,-!p6@KLF16!0.41!1.59!KLF16;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.41!1.59!ZNF676;;chr19:22966925..22966958,-!p1@ZNF99!0.41!1.59!ZNF99;;chr19:30863189..30863200,+!p3@ZNF536!0.41!1.59!ZNF536;;chr19:3359158..3359209,+!p5@NFIC!0.41!1.59!NFIC;;chr19:46801484..46801498,+!p9@HIF3A!0.41!1.59!HIF3A;;chr19:47910182..47910187,-!p3@MEIS3!0.41!1.59!MEIS3;;chr19:54041574..54041589,+!p6@ZNF331!0.41!1.59!ZNF331;;chr19:54041669..54041697,+!p2@ZNF331!0.41!1.59!ZNF331;;chr19:57324701..57324716,-!p2@PEG3!0.41!1.59!PEG3;;chr1:114301553..114301576,-!p6@PHTF1!0.41!1.59!PHTF1;;chr1:151032957..151032968,+!p7@MLLT11!0.41!1.59!MLLT11;;chr1:164528866..164528877,+!p12@PBX1!0.41!1.59!PBX1;;chr1:170632683..170632696,+!p12@PRRX1!0.41!1.59!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.41!1.59!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.41!1.59!PRRX1;;chr1:212873084..212873137,-!p2@BATF3!0.41!1.59!BATF3;;chr1:212873162..212873188,-!p3@BATF3!0.41!1.59!BATF3;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002421;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/hippocampus%2520-%2520adult%252c%2520donor10196.CNhs13795.10169-103B7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10169-103B7
 |is_a=EFO:0002091;;FF:0000210;;FF:0010153
 |is_obsolete=
+|library_id=CNhs13795
+|library_id_phase_based=2:CNhs13795
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10169
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10169
 |name=hippocampus - adult, donor10196
 |namespace=FANTOM5
@@ Line 47: / Line 62: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=103
@@ Line 61: / Line 78: @@
 |rna_weight_ug=67.581
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 82: / Line 100: @@
 |top_motifs=HOXA9_MEIS1:4.43181532831;DBP:4.41469385575;CUX2:3.6507204194;HBP1_HMGB_SSRP1_UBTF:3.54237774868;REST:3.27086878711;NHLH1,2:3.20857854082;RFX1:3.0222917727;PRRX1,2:3.01454227823;MYFfamily:3.01130765603;RREB1:2.99938305888;ZFP161:2.98423557951;ZBTB6:2.95218217759;OCT4_SOX2{dimer}:2.93542437119;AHR_ARNT_ARNT2:2.93232965709;FOXD3:2.8458488298;NKX3-2:2.74289912872;RFX2..5_RFXANK_RFXAP:2.73814406247;MED-1{core}:2.68497493035;EGR1..3:2.65397055765;POU5F1:2.63281725279;SOX5:2.58807796636;PRDM1:2.51625407745;ATF2:2.46115305484;NFIX:2.42012028109;GATA4:2.3328303196;MTE{core}:2.32017909279;POU6F1:2.29068499816;MTF1:2.2395560523;HOX{A4,D4}:2.22379718243;HMGA1,2:2.20966780203;GTF2I:2.19435322692;SOX2:2.10786764525;PAX4:2.0415033191;KLF4:2.03600154971;GFI1B:2.02014219899;MZF1:1.99751882374;NANOG:1.79831767448;FOXM1:1.76425797432;FOXP1:1.75802828465;ZNF384:1.75325069526;TFAP2B:1.74633887592;TGIF1:1.71342901255;NKX2-3_NKX2-5:1.71317159724;IKZF2:1.67986817553;NKX6-1,2:1.67141972276;SMAD1..7,9:1.65097869057;JUN:1.63911981631;FOXP3:1.63285503443;PAX6:1.63113101331;SOX17:1.62030492286;HAND1,2:1.61385546328;HIC1:1.59848504175;BREu{core}:1.55764149816;PAX5:1.52649661338;NRF1:1.52047668899;ARID5B:1.50525147732;LMO2:1.47751370554;FOX{F1,F2,J1}:1.45302499683;SOX{8,9,10}:1.39533225261;MAFB:1.37474501865;ZBTB16:1.35240418755;CDC5L:1.33085296005;PATZ1:1.27315298796;LEF1_TCF7_TCF7L1,2:1.26963205856;MAZ:1.24060650181;ZIC1..3:1.13565970631;ADNP_IRX_SIX_ZHX:1.02530642918;XBP1:0.974824397279;POU1F1:0.970835684899;POU3F1..4:0.946679429666;STAT2,4,6:0.917640060499;LHX3,4:0.91205706008;BPTF:0.900640029424;TFDP1:0.884889495263;HOX{A6,A7,B6,B7}:0.775186268496;TEF:0.696096689509;FOXA2:0.643047255163;T:0.630897478929;MYBL2:0.627410034557;NR3C1:0.613484183046;HMX1:0.613398244953;CREB1:0.57345786705;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.558793861088;TLX1..3_NFIC{dimer}:0.524414979394;EBF1:0.52267511261;IRF7:0.513422449885;SP1:0.474411774038;SREBF1,2:0.46194429804;ONECUT1,2:0.436202437099;STAT1,3:0.435738370332;ESRRA:0.427155479431;EP300:0.39714503426;SPZ1:0.396748315115;ZNF143:0.394861069206;ZEB1:0.393040133607;RBPJ:0.370015455436;FOXQ1:0.368727754414;GTF2A1,2:0.348908032511;FOXN1:0.312929809805;AR:0.311770988372;FOXL1:0.294165878547;TLX2:0.292586943532;MEF2{A,B,C,D}:0.28441664751;ZNF423:0.282640774031;CRX:0.270921679253;YY1:0.268134606968;TFAP2{A,C}:0.252382114836;NFIL3:0.231804622751;VSX1,2:0.228837827837;GFI1:0.20569327778;DMAP1_NCOR{1,2}_SMARC:0.199096319843;PBX1:0.197870545857;MYOD1:0.188424243214;UFEwm:0.177614816832;GZF1:0.17251903218;ATF5_CREB3:0.148323902051;GCM1,2:0.138265014162;RORA:0.11564728535;NKX3-1:0.115109294487;FOX{I1,J2}:0.0698296768759;IKZF1:0.0251398819228;PAX1,9:-0.00198209811956;FOX{D1,D2}:-0.0348154805785;IRF1,2:-0.0468676830312;CEBPA,B_DDIT3:-0.118168688375;PDX1:-0.169079486511;NFATC1..3:-0.172954842795;PAX2:-0.17541068566;PAX3,7:-0.184873762626;NFE2L2:-0.186707699771;ATF4:-0.243148986005;ATF6:-0.275788481709;EVI1:-0.298745052867;TOPORS:-0.300484206959;NANOG{mouse}:-0.335871905332;PITX1..3:-0.354369391664;SPI1:-0.376429182578;ALX1:-0.378124728353;TBX4,5:-0.417117280777;NFY{A,B,C}:-0.485731790565;ZNF238:-0.486707067672;FOXO1,3,4:-0.494952982418;SPIB:-0.496857855374;NFE2:-0.510923762723;GATA6:-0.521728290866;NFE2L1:-0.579717536781;SNAI1..3:-0.673836721779;PAX8:-0.683372009275;AIRE:-0.721763768454;TBP:-0.769804363592;FOSL2:-0.814600345799;HIF1A:-0.878274214102;HNF1A:-0.906622562623;ETS1,2:-0.942918724821;HNF4A_NR2F1,2:-0.944878276652;FOS_FOS{B,L1}_JUN{B,D}:-0.948916110657;POU2F1..3:-0.953871355345;CDX1,2,4:-0.965808782601;MYB:-0.984162687752;BACH2:-0.990588092361;bHLH_family:-0.994535367198;TAL1_TCF{3,4,12}:-1.03260379178;TFCP2:-1.09693134787;TEAD1:-1.10220945064;XCPE1{core}:-1.12824352318;TP53:-1.13531064672;RUNX1..3:-1.15982843922;NKX2-2,8:-1.17514907902;NKX2-1,4:-1.20233249093;ZNF148:-1.21846559137;HSF1,2:-1.27670685281;HLF:-1.28936784463;NFKB1_REL_RELA:-1.30629911172;E2F1..5:-1.33926639794;NR5A1,2:-1.46137211622;NR6A1:-1.49391468465;RXRA_VDR{dimer}:-1.50002645789;TFAP4:-1.51444314178;ELF1,2,4:-1.51638115945;ELK1,4_GABP{A,B1}:-1.5472042377;SRF:-1.57951391243;RXR{A,B,G}:-1.66260375067;GLI1..3:-1.69003448172;ESR1:-1.74747544066;NR1H4:-1.77476640753;HOX{A5,B5}:-1.7937345181;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.82911616627;ALX4:-1.83269162819;HES1:-2.13986257961;EN1,2:-2.21640521474;PPARG:-2.33120160387;STAT5{A,B}:-2.74150282507
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10169-103B7;search_select_hide=table117:FF:10169-103B7
 }}

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FF:10169-103B7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0