FF:10171-103B9: Difference between revisions

Latest revision as of 12:24, 3 June 2020

Name:	parietal lobe - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13797
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	parietal lobe
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005122

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13797		CAGE		DRX008700		DRR009572

Accession ID Hg19

Library id		BAM		CTSS
CNhs13797		DRZ000997		DRZ002382

Accession ID Hg38

Library id		BAM		CTSS
CNhs13797		DRZ012347		DRZ013732

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.409
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.574
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.33
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.524
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.251
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.251
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.188
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.161
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.61
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0607
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.829
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.409
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.755
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.691
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.524
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.409
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.251
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.615
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0.251
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.251
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.62
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.691
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.905
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.691
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.409
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.409
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.524
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13797

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0799
MA0003.1	MA0003.1	0.303
MA0004.1	MA0004.1	0.352
MA0006.1	MA0006.1	0.229
MA0007.1	MA0007.1	0.321
MA0009.1	MA0009.1	0.357
MA0014.1	MA0014.1	0.592
MA0017.1	MA0017.1	0.00253
MA0018.2	MA0018.2	0.1
MA0019.1	MA0019.1	0.807
MA0024.1	MA0024.1	0.699
MA0025.1	MA0025.1	0.991
MA0027.1	MA0027.1	0.539
MA0028.1	MA0028.1	0.0385
MA0029.1	MA0029.1	0.0272
MA0030.1	MA0030.1	0.954
MA0031.1	MA0031.1	0.629
MA0035.2	MA0035.2	0.0276
MA0038.1	MA0038.1	0.575
MA0039.2	MA0039.2	0.0515
MA0040.1	MA0040.1	0.864
MA0041.1	MA0041.1	0.54
MA0042.1	MA0042.1	0.917
MA0043.1	MA0043.1	0.934
MA0046.1	MA0046.1	0.00359
MA0047.2	MA0047.2	0.0332
MA0048.1	MA0048.1	0.078
MA0050.1	MA0050.1	7.18624e-4
MA0051.1	MA0051.1	0.0177
MA0052.1	MA0052.1	0.64
MA0055.1	MA0055.1	0.00124
MA0057.1	MA0057.1	0.891
MA0058.1	MA0058.1	0.287
MA0059.1	MA0059.1	0.134
MA0060.1	MA0060.1	0.832
MA0061.1	MA0061.1	0.0042
MA0062.2	MA0062.2	3.51481e-4
MA0065.2	MA0065.2	4.15726e-4
MA0066.1	MA0066.1	0.0336
MA0067.1	MA0067.1	0.772
MA0068.1	MA0068.1	0.281
MA0069.1	MA0069.1	0.588
MA0070.1	MA0070.1	0.439
MA0071.1	MA0071.1	0.0215
MA0072.1	MA0072.1	0.12
MA0073.1	MA0073.1	0.45
MA0074.1	MA0074.1	0.191
MA0076.1	MA0076.1	0.0616
MA0077.1	MA0077.1	0.0547
MA0078.1	MA0078.1	0.824
MA0079.2	MA0079.2	0.819
MA0080.2	MA0080.2	1.7011e-10
MA0081.1	MA0081.1	0.0148
MA0083.1	MA0083.1	0.0203
MA0084.1	MA0084.1	0.686
MA0087.1	MA0087.1	0.575
MA0088.1	MA0088.1	0.182
MA0090.1	MA0090.1	0.276
MA0091.1	MA0091.1	0.441
MA0092.1	MA0092.1	0.357
MA0093.1	MA0093.1	0.352
MA0099.2	MA0099.2	2.04888e-21
MA0100.1	MA0100.1	0.445
MA0101.1	MA0101.1	3.91649e-4
MA0102.2	MA0102.2	0.0371
MA0103.1	MA0103.1	0.243
MA0104.2	MA0104.2	0.557
MA0105.1	MA0105.1	0.00686
MA0106.1	MA0106.1	0.0441
MA0107.1	MA0107.1	0.00129
MA0108.2	MA0108.2	0.149
MA0111.1	MA0111.1	0.61
MA0112.2	MA0112.2	0.00171
MA0113.1	MA0113.1	0.459
MA0114.1	MA0114.1	0.00208
MA0115.1	MA0115.1	1
MA0116.1	MA0116.1	0.0162
MA0117.1	MA0117.1	0.995
MA0119.1	MA0119.1	0.076
MA0122.1	MA0122.1	0.589
MA0124.1	MA0124.1	0.899
MA0125.1	MA0125.1	0.353
MA0131.1	MA0131.1	0.83
MA0135.1	MA0135.1	0.0923
MA0136.1	MA0136.1	2.92859e-15
MA0137.2	MA0137.2	0.733
MA0138.2	MA0138.2	0.134
MA0139.1	MA0139.1	0.519
MA0140.1	MA0140.1	0.00514
MA0141.1	MA0141.1	0.0119
MA0142.1	MA0142.1	0.697
MA0143.1	MA0143.1	0.537
MA0144.1	MA0144.1	0.414
MA0145.1	MA0145.1	0.177
MA0146.1	MA0146.1	0.00509
MA0147.1	MA0147.1	0.453
MA0148.1	MA0148.1	0.0453
MA0149.1	MA0149.1	0.0426
MA0150.1	MA0150.1	2.12426e-4
MA0152.1	MA0152.1	0.549
MA0153.1	MA0153.1	0.106
MA0154.1	MA0154.1	0.0737
MA0155.1	MA0155.1	0.523
MA0156.1	MA0156.1	1.72023e-11
MA0157.1	MA0157.1	0.537
MA0159.1	MA0159.1	0.00746
MA0160.1	MA0160.1	0.0333
MA0162.1	MA0162.1	0.158
MA0163.1	MA0163.1	1.62681e-4
MA0164.1	MA0164.1	0.9
MA0258.1	MA0258.1	0.0153
MA0259.1	MA0259.1	0.984

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13797

Novel motif	Logo	P-value
1	1	0.109
10	10	0.0517
100	100	0.352
101	101	0.361
102	102	0.752
103	103	0.212
104	104	0.22
105	105	0.2
106	106	0.0254
107	107	0.0807
108	108	0.803
109	109	0.00209
11	11	0.0159
110	110	0.063
111	111	0.47
112	112	0.71
113	113	0.319
114	114	0.562
115	115	0.89
116	116	0.118
117	117	0.0109
118	118	0.167
119	119	0.264
12	12	0.372
120	120	0.234
121	121	0.228
122	122	0.932
123	123	0.746
124	124	0.0124
125	125	0.349
126	126	0.0205
127	127	0.546
128	128	0.178
129	129	0.65
13	13	3.39183e-4
130	130	0.0877
131	131	0.0293
132	132	0.682
133	133	0.0182
134	134	0.75
135	135	0.0413
136	136	6.68062e-4
137	137	0.783
138	138	0.936
139	139	0.181
14	14	0.783
140	140	0.874
141	141	0.86
142	142	0.979
143	143	0.119
144	144	0.868
145	145	0.129
146	146	0.391
147	147	0.818
148	148	0.432
149	149	0.26
15	15	0.091
150	150	0.0979
151	151	0.655
152	152	0.0462
153	153	0.89
154	154	0.308
155	155	0.962
156	156	0.455
157	157	0.332
158	158	0.132
159	159	0.0124
16	16	0.0592
160	160	0.37
161	161	0.196
162	162	0.467
163	163	0.712
164	164	0.022
165	165	0.0511
166	166	0.771
167	167	0.608
168	168	0.431
169	169	0.0125
17	17	0.106
18	18	0.282
19	19	0.204
2	2	0.736
20	20	0.0945
21	21	0.0848
22	22	0.158
23	23	0.422
24	24	0.0108
25	25	0.442
26	26	1.69127e-5
27	27	0.974
28	28	0.696
29	29	0.0111
3	3	0.0432
30	30	0.986
31	31	0.997
32	32	0.0123
33	33	0.0493
34	34	0.487
35	35	0.799
36	36	0.269
37	37	0.0296
38	38	0.339
39	39	0.137
4	4	0.898
40	40	0.0516
41	41	0.452
42	42	0.251
43	43	0.123
44	44	0.281
45	45	0.587
46	46	0.0791
47	47	0.108
48	48	0.048
49	49	0.243
5	5	0.878
50	50	0.163
51	51	0.544
52	52	0.535
53	53	0.961
54	54	0.4
55	55	0.604
56	56	0.473
57	57	0.474
58	58	0.425
59	59	0.0673
6	6	0.941
60	60	0.0667
61	61	0.0392
62	62	0.252
63	63	0.165
64	64	0.278
65	65	0.236
66	66	0.15
67	67	0.42
68	68	0.146
69	69	0.649
7	7	0.0494
70	70	0.0934
71	71	0.00944
72	72	0.379
73	73	0.0154
74	74	0.726
75	75	0.0395
76	76	0.462
77	77	0.123
78	78	0.00184
79	79	0.492
8	8	0.105
80	80	0.443
81	81	0.824
82	82	0.753
83	83	0.0164
84	84	0.519
85	85	0.392
86	86	0.177
87	87	4.76243e-5
88	88	0.699
89	89	0.625
9	9	0.274
90	90	0.356
91	91	0.996
92	92	0.898
93	93	0.654
94	94	0.238
95	95	0.00882
96	96	0.935
97	97	0.625
98	98	0.29
99	99	0.644

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13797

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010034 human parietal lobe - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001872 (parietal lobe)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010034 (human parietal lobe - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0001872,UBERON:0000483,UBERON:0000956,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0002020,UBERON:0002791,UBERON:0003528,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0002619,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002780,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0005743,UBERON:0001950,UBERON:0003075,UBERON:0003056,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0003080,UBERON:0006240,UBERON:0007284,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005122
+|accession_numbers=CAGE;DRX008700;DRR009572;DRZ000997;DRZ002382;DRZ012347;DRZ013732
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001872,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010034
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.46!285.09!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.44!274.94!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.23!168.71!PEG3;;chr9:114287433..114287513,+!p1@ZNF483!2.08!297.59!ZNF483;;chr17:53342311..53342400,+!p1@HLF!2.03!120.29!HLF;;chr9:77112244..77112262,+!p1@RORB!2.02!115.60!RORB;;chr2:162272785..162272836,+!p1@TBR1!1.90!78.11!TBR1;;chr21:34442540..34442560,+!p2@OLIG1!1.86!71.08!OLIG1;;chr11:61520075..61520136,+!p1@C11orf9!1.85!144.50!C11orf9;;chr22:38380543..38380569,-!p1@SOX10!1.85!69.52!SOX10;;chr21:34398234..34398250,+!p1@OLIG2!1.82!65.61!OLIG2;;chrX:25034067..25034088,-!p1@ARX!1.82!65.61!ARX;;chr4:81118647..81118666,+!p1@PRDM8!1.79!79.67!PRDM8;;chr8:53322304..53322340,-!p1@ST18!1.78!58.58!ST18;;chr3:181429704..181429722,+!p1@SOX2!1.77!57.80!SOX2;;chr5:88178983..88179012,-!p1@MEF2C!1.76!413.97!MEF2C;;chr10:48355030..48355090,+!p1@ZNF488!1.74!68.73!ZNF488;;chr8:40755333..40755352,-!p1@ZMAT4!1.74!53.89!ZMAT4;;chr15:80733570..80733659,+!p2@ARNT2!1.73!52.33!ARNT2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.73!52.33!SMARCE1;;chr10:64134120..64134183,+!p1@ZNF365!1.71!60.14!ZNF365;;chr15:80735246..80735321,+!p3@ARNT2!1.71!50.77!ARNT2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.77!POU3F3;;chr14:29235961..29236008,+!p1@FOXG1!1.69!47.65!FOXG1;;chr2:95963052..95963106,+!p1@KCNIP3!1.67!45.30!KCNIP3;;chr4:57547454..57547469,-!p1@HOPX!1.66!44.52!HOPX;;chr2:166326200..166326216,+!p1@CSRNP3!1.64!61.71!CSRNP3;;chr17:37764128..37764258,-!p1@NEUROD2!1.64!42.96!NEUROD2;;chr11:113930425..113930471,+!p1@ZBTB16!1.61!56.24!ZBTB16;;chr18:53070846..53070902,-!p6@TCF4!1.60!39.05!TCF4;;chr2:145277882..145277967,-!p3@ZEB2!1.59!64.05!ZEB2;;chr19:13135582..13135600,+!p3@NFIX!1.58!36.71!NFIX;;chr2:2334997..2335053,-!p1@MYT1L!1.56!35.15!MYT1L;;chr8:53322347..53322378,-!p2@ST18!1.55!34.37!ST18;;chr10:119302232..119302265,+!p1@EMX2!1.54!33.59!EMX2;;chr14:29234581..29234601,+!p2@FOXG1!1.53!32.81!FOXG1;;chr2:60781201..60781258,-!p3@BCL11A!1.53!32.81!BCL11A;;chr12:106976774..106976788,+!p1@RFX4!1.51!31.24!RFX4;;chr3:181429741..181429767,+!p2@SOX2!1.50!30.46!SOX2;;chr19:13135386..13135435,+!p4@NFIX!1.50!30.46!NFIX;;chr15:80696703..80696754,+!p1@ARNT2!1.49!39.83!ARNT2;;chr7:63505799..63505904,+!p1@ZNF727!1.46!28.12!ZNF727;;chr10:134599649..134599653,-!p1@NKX6-2!1.46!28.12!NKX6-2;;chr14:33403881..33403924,+!p1@NPAS3!1.45!27.34!NPAS3;;chr9:126774018..126774055,+!p1@LHX2!1.44!26.56!LHX2;;chr16:1031762..1031781,+!p1@SOX8!1.43!25.78!SOX8;;chr5:88179017..88179046,-!p2@MEF2C!1.42!97.63!MEF2C;;chr12:106976678..106976708,+!p2@RFX4!1.41!24.99!RFX4;;chr7:31380292..31380351,-!p1@NEUROD6!1.40!24.21!NEUROD6;;chr19:38085768..38085821,+!p1@ZNF540!1.39!35.15!ZNF540;;chr19:57352109..57352153,-!p2@ZIM2!1.39!23.43!ZIM2;;chr11:125034640..125034655,+!p1@PKNOX2!1.37!22.65!PKNOX2;;chr11:8102846..8102892,+!p1@TUB!1.36!30.46!TUB;;chr10:64133862..64133884,+!p4@ZNF365!1.34!21.09!ZNF365;;chr12:103351444..103351461,+!p1@ASCL1!1.34!21.09!ASCL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.33!20.31!POU3F3;;chr2:162272889..162272915,+!p2@TBR1!1.33!20.31!TBR1;;chr2:95963120..95963136,+!p2@KCNIP3!1.33!20.31!KCNIP3;;chr4:57522166..57522260,-!p2@HOPX!1.30!21.87!HOPX;;chr19:46801639..46801699,+!p1@HIF3A!1.30!18.75!HIF3A;;chr12:26277956..26277980,-!p1@BHLHE41!1.28!64.05!BHLHE41;;chr1:214161272..214161322,+!p1@PROX1!1.28!24.99!PROX1;;chr19:46800289..46800327,+!p2@HIF3A!1.26!17.18!HIF3A;;chr9:77112225..77112238,+!p2@RORB!1.26!17.18!RORB;;chr11:125034605..125034636,+!p2@PKNOX2!1.26!17.18!PKNOX2;;chr3:126076242..126076257,-!p1@KLF15!1.25!21.09!KLF15;;chr19:38720294..38720348,-!p1@DPF1!1.24!20.31!DPF1;;chrX:118739835..118739862,-!p1@NKRF!1.24!17.96!NKRF;;chr11:31832658..31832681,-!p1@PAX6!1.24!16.40!PAX6;;chr8:145560371..145560449,-!p1@SCRT1!1.24!16.40!SCRT1;;chr3:141105705..141105770,+!p4@ZBTB38!1.23!19.53!ZBTB38;;chr9:126773880..126773895,+!p2@LHX2!1.22!15.62!LHX2;;chrX:85969626..85969664,+!p1@DACH2!1.22!15.62!DACH2;;chr11:113930401..113930422,+!p3@ZBTB16!1.22!15.62!ZBTB16;;chr1:151032860..151032918,+!p1@MLLT11!1.21!178.87!MLLT11;;chr6:15401104..15401166,+!p5@JARID2!1.20!14.84!JARID2;;chr14:58798013..58798071,+!p2@ARID4A!1.20!14.84!ARID4A;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.46!SOX15;;chr11:31832862..31832884,-!p2@PAX6!1.18!14.06!PAX6;;chr12:26277817..26277863,-!p2@BHLHE41!1.17!18.75!BHLHE41;;chr5:92920256..92920282,+!p7@NR2F1!1.16!16.40!NR2F1;;chr22:41763452..41763466,+!p2@TEF!1.15!13.28!TEF;;chr20:42544782..42544828,+!p4@TOX2!1.15!13.28!TOX2;;chr6:126112039..126112062,+!p8@NCOA7!1.14!15.62!NCOA7;;chr1:151032782..151032801,+!p4@MLLT11!1.13!24.99!MLLT11;;chrX:84498989..84499003,+!p1@ZNF711!1.13!17.18!ZNF711;;chr3:24536332..24536358,-!p2@THRB!1.13!12.50!THRB;;chr4:26344778..26344807,+!p8@RBPJ!1.13!12.50!RBPJ;;chr2:192015750..192015793,-!p2@STAT4!1.12!16.40!STAT4;;chr11:8102819..8102845,+!p3@TUB!1.11!14.84!TUB;;chr2:60780753..60780800,-!p1@BCL11A!1.10!57.80!BCL11A;;chr10:38265517..38265591,-!p1@ZNF25!1.10!45.30!ZNF25;;chr2:60780607..60780624,-!p2@BCL11A!1.10!35.93!BCL11A;;chr2:145275982..145276003,-!p7@ZEB2!1.10!11.72!ZEB2;;chr2:166428839..166428859,+!p2@CSRNP3!1.10!11.72!CSRNP3;;chr2:180726291..180726311,-!p1@ZNF385B!1.10!11.72!ZNF385B;;chr19:30863271..30863338,+!p1@ZNF536!1.10!11.72!ZNF536;;chr10:64134045..64134083,+!p3@ZNF365!1.10!11.72!ZNF365;;chr19:21512202..21512225,-!p1@ZNF708!1.08!57.02!ZNF708;;chr11:113930291..113930339,+!p2@ZBTB16!1.08!17.96!ZBTB16;;chr14:29236269..29236285,+!p3@FOXG1!1.08!10.94!FOXG1;;chr14:33403648..33403710,+!p3@NPAS3!1.08!10.94!NPAS3;;chr7:73038839..73038862,-!p1@MLXIPL!1.08!10.94!MLXIPL;;chr15:31658288..31658338,+!p4@KLF13!1.08!10.94!KLF13;;chr16:67198633..67198671,+!p1@HSF4!1.08!10.94!HSF4;;chr6:19837592..19837621,+!p1@ID4!1.07!65.61!ID4;;chr1:151032922..151032951,+!p2@MLLT11!1.07!17.96!MLLT11;;chr14:33408072..33408114,+!p2@NPAS3!1.06!12.50!NPAS3;;chr19:38183208..38183225,-!p1@ZNF781!1.05!13.28!ZNF781;;chr10:64133910..64133925,+!p5@ZNF365!1.05!10.15!ZNF365;;chr2:180726331..180726344,-!p5@ZNF385B!1.05!10.15!ZNF385B;;chr5:138609489..138609542,+!p8@MATR3!1.05!10.15!MATR3;;chr19:13135566..13135577,+!p9@NFIX!1.05!10.15!NFIX;;chr3:24536253..24536328,-!p1@THRB!1.03!18.75!THRB;;chr8:106330656..106330684,+!p1@ZFPM2!1.02!24.99!ZFPM2;;chr7:86781858..86781879,+!p3@DMTF1!1.02!15.62!DMTF1;;chr20:62680984..62680999,-!p1@SOX18!1.02!12.50!SOX18;;chr19:7580549..7580596,+!p3@ZNF358!1.02!9.37!ZNF358;;chr10:31610110..31610159,+!p2@ZEB1!1.02!9.37!ZEB1;;chr2:162272716..162272753,+!p3@TBR1!1.02!9.37!TBR1;;chr2:162273196..162273210,+!p5@TBR1!1.02!9.37!TBR1;;chr2:2330039..2330072,-!p6@MYT1L!1.02!9.37!MYT1L;;chr3:141105235..141105307,+!p7@ZBTB38!1.02!9.37!ZBTB38;;chr3:21792682..21792720,-!p1@ZNF385D!1.02!9.37!ZNF385D;;chr17:38219209..38219230,+!p1@THRA!1.01!121.85!THRA;;chr2:113057415..113057477,+!p3@ZC3H6!1.00!11.72!ZC3H6;;chr7:28725740..28725778,+!p1@CREB5!0.99!80.45!CREB5;;chr14:75894391..75894435,+!p2@JDP2!0.99!10.15!JDP2;;chr8:106330696..106330719,+!p2@ZFPM2!0.98!10.94!ZFPM2;;chr2:162273241..162273253,+!p4@TBR1!0.98!8.59!TBR1;;chr2:2335070..2335098,-!p4@MYT1L!0.98!8.59!MYT1L;;chr4:26344754..26344772,+!p10@RBPJ!0.98!8.59!RBPJ;;chr21:34442584..34442587,+!p3@OLIG1!0.98!8.59!OLIG1;;chr13:100634031..100634045,+!p1@ZIC2!0.98!8.59!ZIC2;;chr14:58797974..58798011,+!p3@ARID4A!0.98!8.59!ARID4A;;chr3:18466787..18466839,-!p1@SATB1!0.97!38.27!SATB1;;chr19:9879350..9879419,-!p2@ZNF846!0.97!17.96!ZNF846;;chr17:70117153..70117174,+!p1@SOX9!0.96!86.70!SOX9;;chrX:106959661..106959763,-!p4@TSC22D3!0.96!24.21!TSC22D3;;chr6:126112074..126112144,+!p1@NCOA7!0.95!109.35!NCOA7;;chr9:3525867..3525902,-!p3@RFX3!0.95!28.12!RFX3;;chr5:88179230..88179270,-!p4@MEF2C!0.95!15.62!MEF2C;;chr1:244219775..244219893,+!p2@ZNF238!0.95!10.94!ZNF238;;chr19:58545454..58545498,+!p1@ZSCAN1!0.95!7.81!ZSCAN1;;chr1:40105299..40105326,-!p1@HEYL!0.95!7.81!HEYL;;chr20:42574529..42574563,+!p3@TOX2!0.95!7.81!TOX2;;chr21:39870339..39870443,-!p1@ERG!0.95!7.81!ERG;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.95!7.81!ZBED1;;chr9:2159850..2159880,+!p14@SMARCA2!0.95!7.81!SMARCA2;;chr11:31832807..31832823,-!p4@PAX6!0.95!7.81!PAX6;;chr11:85393886..85393913,-!p3@CREBZF!0.95!7.81!CREBZF;;chr12:54779511..54779577,-!p5@ZNF385A!0.95!7.81!ZNF385A;;chr8:145560111..145560165,-!p2@SCRT1!0.95!7.81!SCRT1;;chr9:124976328..124976372,-!p2@LHX6!0.95!7.81!LHX6;;chr2:162273254..162273267,+!p6@TBR1!0.95!7.81!TBR1;;chr2:42721205..42721307,+!p4@MTA3!0.95!7.81!MTA3;;chr20:3388541..3388575,-!p2@C20orf194!0.94!31.24!C20orf194;;chr1:151032142..151032195,+!p5@MLLT11!0.93!14.84!MLLT11;;chr12:54785074..54785122,-!p2@ZNF385A!0.93!11.72!ZNF385A;;chr13:45010939..45011033,-!p1@TSC22D1!0.92!496.77!TSC22D1;;chr9:14314131..14314147,-!p2@NFIB!0.92!42.18!NFIB;;chr13:45151509..45151539,-!p6@TSC22D1!0.92!12.50!TSC22D1;;chr6:143266185..143266238,-!p2@HIVEP2!0.92!10.15!HIVEP2;;chr15:61521417..61521460,-!p2@RORA!0.91!16.40!RORA;;chr5:138629628..138629688,+!p2@MATR3!0.90!173.40!MATR3;;chr1:8585945..8586056,-!p3@RERE!0.90!24.21!RERE;;chr20:21494654..21494678,-!p2@NKX2-2!0.90!7.03!NKX2-2;;chr20:21494684..21494708,-!p1@NKX2-2!0.90!7.03!NKX2-2;;chr2:100721328..100721348,-!p4@AFF3!0.90!7.03!AFF3;;chr2:172950227..172950249,+!p2@DLX1!0.90!7.03!DLX1;;chr2:180726254..180726275,-!p4@ZNF385B!0.90!7.03!ZNF385B;;chr5:88179271..88179286,-!p7@MEF2C!0.90!7.03!MEF2C;;chr7:50344289..50344323,+!p1@IKZF1!0.90!7.03!IKZF1;;chr7:73038867..73038878,-!p2@MLXIPL!0.90!7.03!MLXIPL;;chr7:96654133..96654150,-!p1@DLX5!0.90!7.03!DLX5;;chr10:119302150..119302163,+!p8@EMX2!0.90!7.03!EMX2;;chr11:47400078..47400106,-!p1@SPI1!0.90!7.03!SPI1;;chr3:187463179..187463201,-!p2@BCL6!0.89!28.90!BCL6;;chr17:38219143..38219154,+!p2@THRA!0.89!24.99!THRA;;chr2:200323414..200323455,-!p1@SATB2!0.89!14.84!SATB2;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.89!14.84!ZNF395;;chr19:53636125..53636178,-!p1@ZNF415!0.88!19.53!ZNF415;;chr8:60031682..60031710,-!p2@TOX!0.88!10.94!TOX;;chr1:14075903..1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001872;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%2520-%2520adult%252c%2520donor10196.CNhs13797.10171-103B9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%2520-%2520adult%252c%2520donor10196.CNhs13797.10171-103B9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/parietal%2520lobe%2520-%2520adult%252c%2520donor10196.CNhs13797.10171-103B9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%2520-%2520adult%252c%2520donor10196.CNhs13797.10171-103B9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/parietal%2520lobe%2520-%2520adult%252c%2520donor10196.CNhs13797.10171-103B9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10171-103B9
 |is_a=EFO:0002091;;FF:0010034
 |is_obsolete=
+|library_id=CNhs13797
+|library_id_phase_based=2:CNhs13797
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10171
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10171
 |name=parietal lobe - adult, donor10196
 |namespace=FANTOM5
@@ Line 46: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=103
 |rna_catalog_number=
@@ Line 59: / Line 79: @@
 |rna_weight_ug=117.8775
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=HOXA9_MEIS1:4.60380004129;PRRX1,2:3.75769606599;DBP:3.73782568092;CUX2:3.7209308299;REST:3.68675816576;AHR_ARNT_ARNT2:3.46149152921;RREB1:3.32160464667;NHLH1,2:3.28795983837;MYFfamily:3.17797640885;PAX4:3.14836323229;ZFP161:3.01363393347;ZBTB6:2.88441699168;ATF2:2.87689942313;MTF1:2.87601210729;NFIX:2.79768410393;FOXM1:2.70958786899;MED-1{core}:2.62168781111;NKX3-2:2.60676800505;PAX6:2.56293257441;PRDM1:2.54717112862;GATA4:2.48873685276;MTE{core}:2.48237202159;FOXQ1:2.40023469876;OCT4_SOX2{dimer}:2.37618407692;SMAD1..7,9:2.34586170851;SOX2:2.31785605648;ALX1:2.22134094768;EGR1..3:2.21539014526;SOX5:2.15990209382;CDC5L:2.15239931029;RFX1:2.13991067939;NANOG:2.09882002729;JUN:2.02895582752;GTF2I:2.01587003546;SOX{8,9,10}:2.01544567915;ARID5B:1.99942670405;FOXD3:1.94947048696;ZNF384:1.91007969109;TGIF1:1.90143706947;TFAP2B:1.8996456972;HMGA1,2:1.85727723156;NKX6-1,2:1.82593606307;KLF4:1.81364139099;GFI1B:1.79920957832;HOX{A4,D4}:1.79038615381;POU6F1:1.78113952754;LMO2:1.74330658684;MZF1:1.71927525512;HIC1:1.71505847179;SOX17:1.67272782136;BREu{core}:1.64923437152;IKZF2:1.62161113418;BPTF:1.58811501037;NRF1:1.57624956006;ESRRA:1.55324478988;FOXP3:1.54607745378;ZBTB16:1.51480002156;LEF1_TCF7_TCF7L1,2:1.50629331694;POU3F1..4:1.49418121686;PAX5:1.4806995382;RFX2..5_RFXANK_RFXAP:1.47513420715;FOXP1:1.45576961578;HBP1_HMGB_SSRP1_UBTF:1.44560989323;XBP1:1.32108500727;RBPJ:1.29126267269;NR3C1:1.19590878566;TFDP1:1.14590213925;NKX2-3_NKX2-5:1.12718324493;PATZ1:1.12427226151;POU5F1:1.07047602966;MAZ:1.01126604848;TEF:1.00642937442;AIRE:0.994512057162;CRX:0.956105136875;FOX{F1,F2,J1}:0.952045345593;GCM1,2:0.936575255495;PAX1,9:0.87720780129;ADNP_IRX_SIX_ZHX:0.858780920633;MAFB:0.855713973104;HAND1,2:0.852661504307;ZNF423:0.786223907261;FOXL1:0.762782925494;LHX3,4:0.748090953899;YY1:0.747215210098;SREBF1,2:0.733552590789;CREB1:0.705867404677;RORA:0.700301731205;ZNF238:0.680749459419;STAT1,3:0.658457160608;MYOD1:0.634817794981;T:0.630189248535;ONECUT1,2:0.618535732615;ZNF143:0.607977358173;GZF1:0.595514321909;PBX1:0.561797746027;NFIL3:0.550963079667;ZEB1:0.539964760555;STAT2,4,6:0.527266000398;ATF5_CREB3:0.524674815934;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.462742974635;NKX3-1:0.429760865292;FOXN1:0.388578174455;FOX{D1,D2}:0.381932211492;UFEwm:0.374019843381;EVI1:0.351007504654;GFI1:0.34774111755;GTF2A1,2:0.340485630662;MYBL2:0.317712109964;MEF2{A,B,C,D}:0.296542328777;TLX1..3_NFIC{dimer}:0.29081689224;POU1F1:0.275269074553;EP300:0.228292325799;HMX1:0.22387774883;FOXA2:0.19236776231;ATF4:0.183452175403;VSX1,2:0.167225386758;ZIC1..3:0.167205923204;TLX2:0.163884256764;EBF1:0.130721995736;PDX1:0.0913107405062;NFE2L1:0.0675662163697;DMAP1_NCOR{1,2}_SMARC:0.0666545911994;NANOG{mouse}:0.0535698856911;SP1:-0.0315397182236;TOPORS:-0.0334241168959;CDX1,2,4:-0.0338684348008;SPZ1:-0.0338684723904;IRF7:-0.0487417236959;PAX2:-0.0513776451529;IKZF1:-0.0733948198687;NFE2L2:-0.133976196808;TBX4,5:-0.135739803125;NR1H4:-0.178738524665;TFAP2{A,C}:-0.198410008808;AR:-0.211071190202;NFY{A,B,C}:-0.289909576797;NFATC1..3:-0.301782520733;CEBPA,B_DDIT3:-0.32030096998;bHLH_family:-0.348900364913;SNAI1..3:-0.388049915189;PAX3,7:-0.393440305991;IRF1,2:-0.437626953885;HOX{A6,A7,B6,B7}:-0.54142381898;NFE2:-0.565638138334;HNF4A_NR2F1,2:-0.618348529083;SPI1:-0.673411577292;GATA6:-0.689631904145;FOXO1,3,4:-0.722687811913;HSF1,2:-0.728661316423;FOX{I1,J2}:-0.734496727545;NR5A1,2:-0.740594549218;PITX1..3:-0.754086859237;ATF6:-0.763113322447;HNF1A:-0.810482710199;FOSL2:-0.841984249809;SPIB:-0.883599128163;XCPE1{core}:-0.936238460641;NKX2-2,8:-0.949803251001;BACH2:-0.988583508184;TP53:-0.998239462386;ETS1,2:-1.00274913903;FOS_FOS{B,L1}_JUN{B,D}:-1.05093468622;PAX8:-1.09618477896;HIF1A:-1.17611222865;TEAD1:-1.20271326708;E2F1..5:-1.20698160307;RXRA_VDR{dimer}:-1.22396741165;HLF:-1.25116575912;RUNX1..3:-1.27260466559;NFKB1_REL_RELA:-1.33397100434;TFAP4:-1.35016448244;TBP:-1.37122850057;ELK1,4_GABP{A,B1}:-1.40867238617;TAL1_TCF{3,4,12}:-1.44883752412;TFCP2:-1.48473312184;NKX2-1,4:-1.50926746412;MYB:-1.5190588822;ALX4:-1.60280070316;POU2F1..3:-1.60779712984;SRF:-1.64526822403;ESR1:-1.65300092816;ELF1,2,4:-1.67040718071;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.69875936247;PPARG:-1.71721794459;GLI1..3:-1.76791102699;ZNF148:-1.84764951448;HES1:-1.90569886565;RXR{A,B,G}:-1.97111348277;EN1,2:-1.98071691613;HOX{A5,B5}:-2.10094663971;NR6A1:-2.46316318068;STAT5{A,B}:-2.88694496421
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10171-103B9;search_select_hide=table117:FF:10171-103B9
 }}

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FF:10171-103B9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:24, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0