FF:10400-106A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005601 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007814;DRR008686;DRZ000111;DRZ001496;DRZ011461;DRZ012846 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101370,FF:0101035,FF:0101883,FF:0102332,FF:0100740 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!332.83!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.29!193.93!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.06!136.44!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.97!92.83!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.86!71.80!BARX1;;chr12:54778471..54778528,-!p1@ZNF385A!1.83!66.88!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.73!52.79!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.69!54.80!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.63!167.09!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.60!48.09!SATB1;;chr1:92951607..92951661,-!p1@GFI1!1.60!38.70!GFI1;;chr10:31288398..31288455,-!p2@ZNF438!1.59!44.06!ZNF438;;chr2:63277948..63277974,+!p1@OTX1!1.52!32.43!OTX1;;chr2:200322654..200322707,-!p2@SATB2!1.50!44.06!SATB2;;chr1:156460436..156460462,-!p7@MEF2D!1.50!30.64!MEF2D;;chr7:50344289..50344323,+!p1@IKZF1!1.50!30.42!IKZF1;;chr13:72441315..72441454,-!p1@DACH1!1.49!57.93!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.49!30.20!GFI1;;chr1:41157363..41157416,+!p1@NFYC!1.40!441.31!NFYC;;chr1:41157421..41157482,+!p2@NFYC!1.40!268.64!NFYC;;chr2:175199675..175199688,+!p1@SP9!1.40!24.16!SP9;;chr6:85473156..85473210,-!p2@TBX18!1.39!28.63!TBX18;;chr7:27205136..27205164,-!p1@HOXA9!1.38!22.81!HOXA9;;chr5:72744594..72744609,-!p1@FOXD1!1.35!95.06!FOXD1;;chr1:40942922..40942997,+!p1@ZNF642!1.35!55.02!ZNF642;;chr1:40997285..40997352,+!p1@ZNF684!1.34!71.58!ZNF684;;chr14:75988771..75988826,+!p1@BATF!1.34!27.96!BATF;;chr7:137620650..137620677,-!p3@CREB3L2!1.34!21.03!CREB3L2;;chr2:145277640..145277771,-!p1@ZEB2!1.33!262.60!ZEB2;;chr7:137620684..137620711,-!p4@CREB3L2!1.33!20.35!CREB3L2;;chr6:135516877..135516900,+!p5@MYB!1.30!19.01!MYB;;chr11:47400062..47400077,-!p2@SPI1!1.30!19.01!SPI1;;chr5:88178983..88179012,-!p1@MEF2C!1.28!134.88!MEF2C;;chr6:135502472..135502489,+!p3@MYB!1.28!18.12!MYB;;chr1:50889103..50889145,-!p1@DMRTA2!1.27!17.45!DMRTA2;;chr18:55102598..55102623,+!p1@ONECUT2!1.26!17.22!ONECUT2;;chr7:113726357..113726443,+!p1@FOXP2!1.25!28.41!FOXP2;;chr7:128577972..128578047,+!p1@IRF5!1.25!26.17!IRF5;;chr1:40997363..40997392,+!p2@ZNF684!1.25!21.70!ZNF684;;chr6:34204973..34204990,+!p4@HMGA1!1.24!212.94!HMGA1;;chr7:27224795..27224840,-!p2@HOXA11!1.22!15.66!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.22!15.66!HOXA11;;chr7:27205106..27205134,-!p2@HOXA9!1.22!15.43!HOXA9;;chr1:156470515..156470542,-!p2@MEF2D!1.20!77.62!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.20!14.99!TP73;;chr3:157824001..157824078,-!p2@SHOX2!1.20!14.99!SHOX2;;chr2:63277978..63277995,+!p2@OTX1!1.19!14.54!OTX1;;chr7:50343634..50343717,+!p2@IKZF1!1.19!14.32!IKZF1;;chr18:55102628..55102646,+!p2@ONECUT2!1.18!14.09!ONECUT2;;chr18:22932080..22932170,-!p1@ZNF521!1.17!58.60!ZNF521;;chr10:31288370..31288393,-!p3@ZNF438!1.17!13.87!ZNF438;;chr7:27213893..27213954,-!p1@HOXA10!1.17!13.87!HOXA10;;chr2:100759037..100759058,-!p2@AFF3!1.17!13.64!AFF3;;chr1:156460473..156460486,-!p12@MEF2D!1.16!13.42!MEF2D;;chr3:18480217..18480239,-!p3@SATB1!1.15!12.97!SATB1;;chr1:247171316..247171336,-!p3@ZNF695!1.14!19.24!ZNF695;;chr16:54319010..54319041,-!p8@IRX3!1.14!12.75!IRX3;;chr13:41593425..41593480,-!p1@ELF1!1.12!77.62!ELF1;;chr11:47399996..47400014,-!p4@SPI1!1.11!11.85!SPI1;;chr1:92952473..92952489,-!p3@GFI1!1.11!11.85!GFI1;;chr16:54320646..54320672,-!p2@IRX3!1.10!17.67!IRX3;;chr18:22805268..22805280,-!p8@ZNF521!1.10!11.63!ZNF521;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.41!SPI1;;chr3:157824202..157824211,-!p3@SHOX2!1.09!11.18!SHOX2;;chr16:54320617..54320643,-!p3@IRX3!1.08!14.09!IRX3;;chr1:167298300..167298319,+!p2@POU2F1!1.07!10.74!POU2F1;;chr2:68592394..68592405,+!p2@PLEK!1.04!10.07!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.04!10.07!IKZF1;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.84!SATB2;;chr17:41277372..41277418,-!p1@BRCA1!1.03!36.24!BRCA1;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.03!35.56!ZNF670;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.32!MAFG;;chr21:34442439..34442455,+!p1@OLIG1!1.02!9.39!OLIG1;;chr11:47400032..47400043,-!p5@SPI1!1.02!9.39!SPI1;;chr16:54320280..54320291,-!p9@IRX3!1.01!9.17!IRX3;;chr6:135516909..135516925,+!p6@MYB!1.01!9.17!MYB;;chr1:167298384..167298412,+!p3@POU2F1!1.01!9.17!POU2F1;;chr20:42295745..42295765,+!p1@MYBL2!1.00!148.97!MYBL2;;chr1:40627038..40627071,+!p1@RLF!1.00!121.46!RLF;;chr11:128563948..128564003,+!p1@FLI1!1.00!110.05!FLI1;;chr16:54320675..54320715,-!p1@IRX3!1.00!19.91!IRX3;;chr2:145277882..145277967,-!p3@ZEB2!1.00!15.88!ZEB2;;chr1:156470494..156470505,-!p3@MEF2D!1.00!13.20!MEF2D;;chr12:54694758..54694805,-!p1@NFE2!1.00!10.96!NFE2;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.95!KDM5D;;chr7:27239703..27239715,-!p1@HOXA13!0.98!8.50!HOXA13;;chr16:54320158..54320200,-!p5@IRX3!0.97!12.08!IRX3;;chr1:167298425..167298440,+!p8@POU2F1!0.97!8.28!POU2F1;;chrX:66763856..66763896,+!p1@AR!0.96!11.85!AR;;chr18:22804637..22804660,-!p10@ZNF521!0.96!8.05!ZNF521;;chr11:47400045..47400060,-!p6@SPI1!0.96!8.05!SPI1;;chr16:54320322..54320343,-!p7@IRX3!0.95!7.83!IRX3;;chr1:92949505..92949543,-!p5@GFI1!0.95!7.83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D1A!0.21!10.29!ARID1A;;chr12:133532864..133532899,-!p1@ZNF605!0.21!10.07!ZNF605;;chr14:89883509..89883587,-!p2@FOXN3!0.21!9.39!FOXN3;;chr3:40518599..40518664,+!p1@ZNF619!0.21!7.83!ZNF619;;chr6:43139041..43139094,+!p3@SRF!0.21!7.60!SRF;;chrX:47342565..47342638,-!p1@ZNF41!0.21!7.60!ZNF41;;chr2:178128199..178128245,-!p3@NFE2L2!0.21!7.16!NFE2L2;;chr6:34205372..34205412,+!p5@HMGA1!0.21!6.71!HMGA1;;chr16:31085514..31085576,-!p1@ZNF668!0.21!5.37!ZNF668;;chr19:53238260..53238312,-!p1@ZNF611!0.21!4.47!ZNF611;;chr19:23870007..23870022,-!p2@ZNF675!0.21!4.03!ZNF675;;chr10:44101850..44101896,+!p1@ZNF485!0.21!3.80!ZNF485;;chr15:66994663..66994680,+!p1@SMAD6!0.21!2.68!SMAD6;;chr19:47615426..47615439,-!p5@ZC3H4!0.21!2.68!ZC3H4;;chr19:52430697..52430749,+!p1@ZNF613!0.21!2.68!ZNF613;;chr19:53970970..53971021,+!p1@ZNF813!0.21!2.68!ZNF813;;chr4:76439649..76439662,+!p2@THAP6!0.21!2.68!THAP6;;chr2:75937794..75937867,-!p2@GCFC2!0.21!2.46!GCFC2;;chr6:7108855..7108903,+!p5@RREB1!0.21!2.46!RREB1;;chr7:99070527..99070542,+!p2@ZNF789!0.21!2.46!ZNF789;;chr16:3313791..3313834,+!p2@ZNF263!0.21!2.46!ZNF263;;chr19:21324863..21324874,+!p2@ZNF431!0.21!1.79!ZNF431;;chr12:53574398..53574412,+!p3@ZNF740!0.21!1.79!ZNF740;;chr5:142783792..142783842,-!p5@NR3C1!0.21!1.79!NR3C1;;chr4:87968203..87968221,+!p11@AFF1!0.21!1.57!AFF1;;chr10:21823381..21823399,+!p4@MLLT10!0.21!1.57!MLLT10;;chr10:94449649..94449664,+!p3@HHEX!0.21!1.34!HHEX;;chr1:67396022..67396041,+!p6@MIER1!0.21!1.34!MIER1;;chr20:33413523..33413534,-!p3@NCOA6!0.21!1.12!NCOA6;;chr17:42295897..42295953,-!p10@UBTF!0.21!1.12!UBTF;;chr18:53255839..53255854,-!p13@TCF4!0.21!0.89!TCF4;;chr7:100076873..100076880,-!p6@TSC22D4!0.21!0.89!TSC22D4;;chr8:81397876..81397898,+!p5@ZBTB10!0.21!0.89!ZBTB10;;chr1:149858461..149858479,+!p1@BOLA1!0.20!567.69!BOLA1;;chr2:37458692..37458745,-!p1@CEBPZ!0.20!54.13!CEBPZ;;chr16:67596417..67596497,+!p1@CTCF!0.20!48.99!CTCF;;chr17:40719102..40719141,+!p1@MLX!0.20!45.41!MLX;;chr18:32924372..32924430,-!p1@ZNF24!0.20!43.39!ZNF24;;chr19:11071685..11071798,+!p1@SMARCA4!0.20!40.04!SMARCA4;;chr16:67226019..67226127,+!p1@E2F4!0.20!18.12!E2F4;;chr5:138629389..138629416,+!p4@MATR3!0.20!17.22!MATR3;;chr1:151431909..151431987,-!p1@POGZ!0.20!16.55!POGZ;;chr22:41601296..41601355,+!p1@L3MBTL2!0.20!15.88!L3MBTL2;;chr16:29817617..29817664,+!p4@MAZ!0.20!14.54!MAZ;;chr11:118992269..118992334,+!p1@HINFP!0.20!11.63!HINFP;;chr2:113033164..113033219,+!p1@ZC3H6!0.20!11.41!ZC3H6;;chr19:52490043..52490113,-!p1@ZNF350!0.20!10.51!ZNF350;;chr2:174828892..174828972,-!p2@SP3!0.20!9.84!SP3;;chr6:35227480..35227546,+!p1@ZNF76!0.20!8.72!ZNF76;;chr15:50647370..50647405,-!p2@GABPB1!0.20!7.16!GABPB1;;chr1:149871114..149871134,+!p3@BOLA1!0.20!4.92!BOLA1;;chr1:151043216..151043256,+!p1@GABPB2!0.20!4.25!GABPB2;;chr1:67396044..67396071,+!p3@MIER1!0.20!4.25!MIER1;;chr6:157098579..157098634,+!p4@ARID1B!0.20!2.46!ARID1B;;chr19:36980455..36980469,-!p2@ZNF566!0.20!2.24!ZNF566;;chr12:53774035..53774058,+!p4@SP1!0.20!2.01!SP1;;chr15:57025812..57025819,-!p4@ZNF280D!0.20!1.34!ZNF280D;;chr16:30569604..30569629,-!p3@ZNF764!0.20!1.34!ZNF764;;chr1:158985493..158985535,+!p4@IFI16!0.20!1.34!IFI16;;chr4:87928105..87928126,+!p13@AFF1!0.20!1.34!AFF1;;chr11:6947647..6947698,+!p2@ZNF215!0.20!1.12!ZNF215;;chrX:84498989..84499003,+!p1@ZNF711!0.20!1.12!ZNF711;;chr1:158979680..158979683,+!p9@IFI16!0.20!1.12!IFI16;;chr16:30546275..30546297,-!p2@ZNF747!0.20!1.12!ZNF747;;chr15:37392593..37392607,-!p13@MEIS2!0.20!0.89!MEIS2;;chr19:36980474..36980485,-!p4@ZNF566!0.20!0.89!ZNF566;;chr10:22292509..22292523,-!p4@DNAJC1!0.20!0.89!DNAJC1;; | |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!332.83!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.29!193.93!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.06!136.44!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.97!92.83!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.86!71.80!BARX1;;chr12:54778471..54778528,-!p1@ZNF385A!1.83!66.88!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.73!52.79!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.69!54.80!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.63!167.09!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.60!48.09!SATB1;;chr1:92951607..92951661,-!p1@GFI1!1.60!38.70!GFI1;;chr10:31288398..31288455,-!p2@ZNF438!1.59!44.06!ZNF438;;chr2:63277948..63277974,+!p1@OTX1!1.52!32.43!OTX1;;chr2:200322654..200322707,-!p2@SATB2!1.50!44.06!SATB2;;chr1:156460436..156460462,-!p7@MEF2D!1.50!30.64!MEF2D;;chr7:50344289..50344323,+!p1@IKZF1!1.50!30.42!IKZF1;;chr13:72441315..72441454,-!p1@DACH1!1.49!57.93!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.49!30.20!GFI1;;chr1:41157363..41157416,+!p1@NFYC!1.40!441.31!NFYC;;chr1:41157421..41157482,+!p2@NFYC!1.40!268.64!NFYC;;chr2:175199675..175199688,+!p1@SP9!1.40!24.16!SP9;;chr6:85473156..85473210,-!p2@TBX18!1.39!28.63!TBX18;;chr7:27205136..27205164,-!p1@HOXA9!1.38!22.81!HOXA9;;chr5:72744594..72744609,-!p1@FOXD1!1.35!95.06!FOXD1;;chr1:40942922..40942997,+!p1@ZNF642!1.35!55.02!ZNF642;;chr1:40997285..40997352,+!p1@ZNF684!1.34!71.58!ZNF684;;chr14:75988771..75988826,+!p1@BATF!1.34!27.96!BATF;;chr7:137620650..137620677,-!p3@CREB3L2!1.34!21.03!CREB3L2;;chr2:145277640..145277771,-!p1@ZEB2!1.33!262.60!ZEB2;;chr7:137620684..137620711,-!p4@CREB3L2!1.33!20.35!CREB3L2;;chr6:135516877..135516900,+!p5@MYB!1.30!19.01!MYB;;chr11:47400062..47400077,-!p2@SPI1!1.30!19.01!SPI1;;chr5:88178983..88179012,-!p1@MEF2C!1.28!134.88!MEF2C;;chr6:135502472..135502489,+!p3@MYB!1.28!18.12!MYB;;chr1:50889103..50889145,-!p1@DMRTA2!1.27!17.45!DMRTA2;;chr18:55102598..55102623,+!p1@ONECUT2!1.26!17.22!ONECUT2;;chr7:113726357..113726443,+!p1@FOXP2!1.25!28.41!FOXP2;;chr7:128577972..128578047,+!p1@IRF5!1.25!26.17!IRF5;;chr1:40997363..40997392,+!p2@ZNF684!1.25!21.70!ZNF684;;chr6:34204973..34204990,+!p4@HMGA1!1.24!212.94!HMGA1;;chr7:27224795..27224840,-!p2@HOXA11!1.22!15.66!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.22!15.66!HOXA11;;chr7:27205106..27205134,-!p2@HOXA9!1.22!15.43!HOXA9;;chr1:156470515..156470542,-!p2@MEF2D!1.20!77.62!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.20!14.99!TP73;;chr3:157824001..157824078,-!p2@SHOX2!1.20!14.99!SHOX2;;chr2:63277978..63277995,+!p2@OTX1!1.19!14.54!OTX1;;chr7:50343634..50343717,+!p2@IKZF1!1.19!14.32!IKZF1;;chr18:55102628..55102646,+!p2@ONECUT2!1.18!14.09!ONECUT2;;chr18:22932080..22932170,-!p1@ZNF521!1.17!58.60!ZNF521;;chr10:31288370..31288393,-!p3@ZNF438!1.17!13.87!ZNF438;;chr7:27213893..27213954,-!p1@HOXA10!1.17!13.87!HOXA10;;chr2:100759037..100759058,-!p2@AFF3!1.17!13.64!AFF3;;chr1:156460473..156460486,-!p12@MEF2D!1.16!13.42!MEF2D;;chr3:18480217..18480239,-!p3@SATB1!1.15!12.97!SATB1;;chr1:247171316..247171336,-!p3@ZNF695!1.14!19.24!ZNF695;;chr16:54319010..54319041,-!p8@IRX3!1.14!12.75!IRX3;;chr13:41593425..41593480,-!p1@ELF1!1.12!77.62!ELF1;;chr11:47399996..47400014,-!p4@SPI1!1.11!11.85!SPI1;;chr1:92952473..92952489,-!p3@GFI1!1.11!11.85!GFI1;;chr16:54320646..54320672,-!p2@IRX3!1.10!17.67!IRX3;;chr18:22805268..22805280,-!p8@ZNF521!1.10!11.63!ZNF521;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.41!SPI1;;chr3:157824202..157824211,-!p3@SHOX2!1.09!11.18!SHOX2;;chr16:54320617..54320643,-!p3@IRX3!1.08!14.09!IRX3;;chr1:167298300..167298319,+!p2@POU2F1!1.07!10.74!POU2F1;;chr2:68592394..68592405,+!p2@PLEK!1.04!10.07!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.04!10.07!IKZF1;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.84!SATB2;;chr17:41277372..41277418,-!p1@BRCA1!1.03!36.24!BRCA1;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.03!35.56!ZNF670;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.32!MAFG;;chr21:34442439..34442455,+!p1@OLIG1!1.02!9.39!OLIG1;;chr11:47400032..47400043,-!p5@SPI1!1.02!9.39!SPI1;;chr16:54320280..54320291,-!p9@IRX3!1.01!9.17!IRX3;;chr6:135516909..135516925,+!p6@MYB!1.01!9.17!MYB;;chr1:167298384..167298412,+!p3@POU2F1!1.01!9.17!POU2F1;;chr20:42295745..42295765,+!p1@MYBL2!1.00!148.97!MYBL2;;chr1:40627038..40627071,+!p1@RLF!1.00!121.46!RLF;;chr11:128563948..128564003,+!p1@FLI1!1.00!110.05!FLI1;;chr16:54320675..54320715,-!p1@IRX3!1.00!19.91!IRX3;;chr2:145277882..145277967,-!p3@ZEB2!1.00!15.88!ZEB2;;chr1:156470494..156470505,-!p3@MEF2D!1.00!13.20!MEF2D;;chr12:54694758..54694805,-!p1@NFE2!1.00!10.96!NFE2;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.95!KDM5D;;chr7:27239703..27239715,-!p1@HOXA13!0.98!8.50!HOXA13;;chr16:54320158..54320200,-!p5@IRX3!0.97!12.08!IRX3;;chr1:167298425..167298440,+!p8@POU2F1!0.97!8.28!POU2F1;;chrX:66763856..66763896,+!p1@AR!0.96!11.85!AR;;chr18:22804637..22804660,-!p10@ZNF521!0.96!8.05!ZNF521;;chr11:47400045..47400060,-!p6@SPI1!0.96!8.05!SPI1;;chr16:54320322..54320343,-!p7@IRX3!0.95!7.83!IRX3;;chr1:92949505..92949543,-!p5@GFI1!0.95!7.83!GFI1;;chr7:35293685..35293718,-!p1@TBX20!0.95!7.83!TBX20;;chr2:200320768..200320800,-!p4@SATB2!0.93!7.60!SATB2;;chr19:13213662..13213686,-!p1@LYL1!0.91!10.74!LYL1;;chr19:13213954..13214021,-!p4@LYL1!0.91!7.16!LYL1;;chr3:18467290..18467311,-!p8@SATB1!0.91!7.16!SATB1;;chr7:19157248..19157268,-!p1@TWIST1!0.88!19.24!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!0.88!11.41!TCF12;;chr19:13213704..13213726,-!p3@LYL1!0.88!8.95!LYL1;;chr20:42295713..42295738,+!p2@MYBL2!0.87!39.59!MYBL2;;chr19:20011744..20011770,+!p1@ZNF93!0.87!26.17!ZNF93;;chr2:145275982..145276003,-!p7@ZEB2!0.87!6.49!ZEB2;;chr1:41157266..41157314,+!p3@NFYC!0.86!55.92!NFYC;;chr7:64838786..64838809,+!p2@ZNF92!0.85!37.13!ZNF92;;chr7:27239740..27239759,-!p2@HOXA13!0.85!6.04!HOXA13;;chr19:22605136..22605154,-!p1@ZNF98!0.85!6.04!ZNF98;;chr2:100759010..100759035,-!p1@AFF3!0.85!6.04!AFF3;;chr2:175199697..175199706,+!p2@SP9!0.85!6.04!SP9;;chr2:200325204..200325243,-!p7@SATB2!0.85!6.04!SATB2;;chr3:18480173..18480189,-!p6@SATB1!0.85!6.04!SATB1;;chr1:247171347..247171366,-!p2@ZNF695!0.83!10.96!ZNF695;;chr6:45390269..45390298,+!p5@RUNX2!0.83!9.84!RUNX2;;chr19:23299814..23299844,+!p1@ZNF730!0.83!7.16!ZNF730;;chr3:157823517..157823562,-!p1@SHOX2!0.83!6.26!SHOX2;;chr1:40105347..40105358,-!p2@HEYL!0.83!5.82!HEYL;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.82!ZFY;;chr8:145669791..145669834,-!p1@TONSL!0.82!17.00!TONSL;;chr19:22817119..22817145,+!p1@ZNF492!0.82!9.62!ZNF492;;chr1:221052733..221052749,+!p2@HLX!0.80!7.16!HLX;;chr1:41157641..41157665,+!p7@NFYC!0.80!6.93!NFYC;;chr1:41204530..41204541,+!p8@NFYC!0.80!6.49!NFYC;;chr2:102091566..102091581,-!p1@RFX8!0.80!5.37!RFX8;;chr7:114054864..114054876,+!p11@FOXP2!0.80!5.37!FOXP2;;chrY:21906761..21906810,-!p2@KDM5D!0.80!5.37!KDM5D;;chr1:43148059..43148108,+!p1@YBX1!0.79!365.04!YBX1;;chr21:36421535..36421610,-!p2@RUNX1!0.79!19.68!RUNX1;;chr4:87857474..87857489,+!p7@AFF1!0.79!9.39!AFF1;;chr11:19263192..19263222,-!p2@E2F8!0.79!6.49!E2F8;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.79!5.14!ZNF469;;chr19:50922187..50922204,+!p1@SPIB!0.79!5.14!SPIB;;chr7:113726226..113726245,+!p3@FOXP2!0.79!5.14!FOXP2;;chr19:21950332..21950356,-!p2@ZNF100!0.78!11.41!ZNF100;;chr1:40367530..40367597,-!p1@MYCL1!0.78!9.62!MYCL1;;chr3:71630980..71631110,-!p3@FOXP1!0.77!18.34!FOXP1;;chr19:20011731..20011743,+!p3@ZNF93!0.77!6.49!ZNF93;;chr11:19262421..19262455,-!p3@E2F8!0.77!4.92!E2F8;;chr11:44331576..44331650,-!p1@ALX4!0.77!4.92!ALX4;;chr7:114054885..114054910,+!p4@FOXP2!0.77!4.92!FOXP2;;chr2:60780607..60780624,-!p2@BCL11A!0.76!15.88!BCL11A;;chr6:45390300..45390335,+!p4@RUNX2!0.76!7.83!RUNX2;;chr16:54320101..54320125,-!p4@IRX3!0.76!6.93!IRX3;;chr2:208031943..208031978,-!p5@KLF7!0.76!6.49!KLF7;;chr9:1050331..1050363,+!p1@DMRT2!0.76!4.70!DMRT2;;chr19:22605097..22605121,-!p2@ZNF98!0.76!4.70!ZNF98;;chr10:31146697..31146708,-!p11@ZNF438!0.76!4.70!ZNF438;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.75!23.26!TAL1;;chr5:88179017..88179046,-!p2@MEF2C!0.75!20.13!MEF2C;;chr19:20011775..20011800,+!p2@ZNF93!0.75!8.72!ZNF93;;chr1:41157671..41157695,+!p6@NFYC!0.75!6.71!NFYC;;chr19:12163769..12163798,-!p1@ZNF878!0.74!6.04!ZNF878;;chr11:19262461..19262476,-!p5@E2F8!0.74!4.47!E2F8;;chr13:72441074..72441172,-!p2@DACH1!0.74!4.47!DACH1;;chr2:145275947..145275981,-!p10@ZEB2!0.74!4.47!ZEB2;;chr20:21378152..21378169,-!p1@NKX2-4!0.74!4.47!NKX2-4;;chr1:40915725..40915808,+!p1@ZNF643!0.72!13.64!ZNF643;;chr1:156460402..156460417,-!p22@MEF2D!0.72!4.25!MEF2D;;chr13:100623375..100623425,-!p1@ZIC5!0.72!4.25!ZIC5;;chr17:79881318..79881331,-!p7@MAFG!0.72!4.25!MAFG;;chr19:3574330..3574393,+!p2@HMG20B!0.72!4.25!HMG20B;;chr9:126774018..126774055,+!p1@LHX2!0.72!4.25!LHX2;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.35!ZNF724P;;chr1:221053049..221053075,+!p3@HLX!0.70!7.38!HLX;;chr10:22292591..22292606,-!p2@DNAJC1!0.70!6.93!DNAJC1;;chr16:54964740..54964789,+!p1@IRX5!0.70!6.04!IRX5;;chr4:87857491..87857519,+!p10@AFF1!0.70!5.82!AFF1;;chr19:48774586..48774670,+!p1@ZNF114!0.70!5.14!ZNF114;;chr1:40105299..40105326,-!p1@HEYL!0.70!4.03!HEYL;;chr16:54320302..54320317,-!p10@IRX3!0.70!4.03!IRX3;;chr18:22932004..22932021,-!p2@ZNF521!0.70!4.03!ZNF521;;chr19:2867325..2867348,+!p1@ZNF556!0.70!4.03!ZNF556;;chr7:64363638..64363667,+!p1@ZNF273!0.69!22.14!ZNF273;;chrX:66763815..66763854,+!p2@AR!0.69!5.37!AR;;chr6:45390002..45390023,+!p6@RUNX2!0.68!6.93!RUNX2;;chr6:144385698..144385742,-!p2@PLAGL1!0.68!4.70!PLAGL1;;chr5:71803177..71803255,-!p1@ZNF366!0.68!3.80!ZNF366;;chr5:88120151..88120177,-!p6@MEF2C!0.68!3.80!MEF2C;;chr6:135513595..135513617,+!p4@MYB!0.68!3.80!MYB;;chr10:31288329..31288353,-!p7@ZNF438!0.68!3.80!ZNF438;;chr13:72440901..72440968,-!p4@DACH1!0.68!3.80!DACH1;;chr21:34442540..34442560,+!p2@OLIG1!0.68!3.80!OLIG1;;chr1:167298449..167298461,+!p9@POU2F1!0.66!3.58!POU2F1;;chr1:3569101..3569115,+!p2@TP73!0.66!3.58!TP73;;chr2:145277589..145277612,-!p12@ZEB2!0.66!3.58!ZEB2;;chr3:18462463..18462475,-!p45@SATB1!0.66!3.58!SATB1;;chr10:135044190..135044229,+!p3@UTF1!0.66!3.58!UTF1;;chr14:55493763.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D1A!0.21!10.29!ARID1A;;chr12:133532864..133532899,-!p1@ZNF605!0.21!10.07!ZNF605;;chr14:89883509..89883587,-!p2@FOXN3!0.21!9.39!FOXN3;;chr3:40518599..40518664,+!p1@ZNF619!0.21!7.83!ZNF619;;chr6:43139041..43139094,+!p3@SRF!0.21!7.60!SRF;;chrX:47342565..47342638,-!p1@ZNF41!0.21!7.60!ZNF41;;chr2:178128199..178128245,-!p3@NFE2L2!0.21!7.16!NFE2L2;;chr6:34205372..34205412,+!p5@HMGA1!0.21!6.71!HMGA1;;chr16:31085514..31085576,-!p1@ZNF668!0.21!5.37!ZNF668;;chr19:53238260..53238312,-!p1@ZNF611!0.21!4.47!ZNF611;;chr19:23870007..23870022,-!p2@ZNF675!0.21!4.03!ZNF675;;chr10:44101850..44101896,+!p1@ZNF485!0.21!3.80!ZNF485;;chr15:66994663..66994680,+!p1@SMAD6!0.21!2.68!SMAD6;;chr19:47615426..47615439,-!p5@ZC3H4!0.21!2.68!ZC3H4;;chr19:52430697..52430749,+!p1@ZNF613!0.21!2.68!ZNF613;;chr19:53970970..53971021,+!p1@ZNF813!0.21!2.68!ZNF813;;chr4:76439649..76439662,+!p2@THAP6!0.21!2.68!THAP6;;chr2:75937794..75937867,-!p2@GCFC2!0.21!2.46!GCFC2;;chr6:7108855..7108903,+!p5@RREB1!0.21!2.46!RREB1;;chr7:99070527..99070542,+!p2@ZNF789!0.21!2.46!ZNF789;;chr16:3313791..3313834,+!p2@ZNF263!0.21!2.46!ZNF263;;chr19:21324863..21324874,+!p2@ZNF431!0.21!1.79!ZNF431;;chr12:53574398..53574412,+!p3@ZNF740!0.21!1.79!ZNF740;;chr5:142783792..142783842,-!p5@NR3C1!0.21!1.79!NR3C1;;chr4:87968203..87968221,+!p11@AFF1!0.21!1.57!AFF1;;chr10:21823381..21823399,+!p4@MLLT10!0.21!1.57!MLLT10;;chr10:94449649..94449664,+!p3@HHEX!0.21!1.34!HHEX;;chr1:67396022..67396041,+!p6@MIER1!0.21!1.34!MIER1;;chr20:33413523..33413534,-!p3@NCOA6!0.21!1.12!NCOA6;;chr17:42295897..42295953,-!p10@UBTF!0.21!1.12!UBTF;;chr18:53255839..53255854,-!p13@TCF4!0.21!0.89!TCF4;;chr7:100076873..100076880,-!p6@TSC22D4!0.21!0.89!TSC22D4;;chr8:81397876..81397898,+!p5@ZBTB10!0.21!0.89!ZBTB10;;chr1:149858461..149858479,+!p1@BOLA1!0.20!567.69!BOLA1;;chr2:37458692..37458745,-!p1@CEBPZ!0.20!54.13!CEBPZ;;chr16:67596417..67596497,+!p1@CTCF!0.20!48.99!CTCF;;chr17:40719102..40719141,+!p1@MLX!0.20!45.41!MLX;;chr18:32924372..32924430,-!p1@ZNF24!0.20!43.39!ZNF24;;chr19:11071685..11071798,+!p1@SMARCA4!0.20!40.04!SMARCA4;;chr16:67226019..67226127,+!p1@E2F4!0.20!18.12!E2F4;;chr5:138629389..138629416,+!p4@MATR3!0.20!17.22!MATR3;;chr1:151431909..151431987,-!p1@POGZ!0.20!16.55!POGZ;;chr22:41601296..41601355,+!p1@L3MBTL2!0.20!15.88!L3MBTL2;;chr16:29817617..29817664,+!p4@MAZ!0.20!14.54!MAZ;;chr11:118992269..118992334,+!p1@HINFP!0.20!11.63!HINFP;;chr2:113033164..113033219,+!p1@ZC3H6!0.20!11.41!ZC3H6;;chr19:52490043..52490113,-!p1@ZNF350!0.20!10.51!ZNF350;;chr2:174828892..174828972,-!p2@SP3!0.20!9.84!SP3;;chr6:35227480..35227546,+!p1@ZNF76!0.20!8.72!ZNF76;;chr15:50647370..50647405,-!p2@GABPB1!0.20!7.16!GABPB1;;chr1:149871114..149871134,+!p3@BOLA1!0.20!4.92!BOLA1;;chr1:151043216..151043256,+!p1@GABPB2!0.20!4.25!GABPB2;;chr1:67396044..67396071,+!p3@MIER1!0.20!4.25!MIER1;;chr6:157098579..157098634,+!p4@ARID1B!0.20!2.46!ARID1B;;chr19:36980455..36980469,-!p2@ZNF566!0.20!2.24!ZNF566;;chr12:53774035..53774058,+!p4@SP1!0.20!2.01!SP1;;chr15:57025812..57025819,-!p4@ZNF280D!0.20!1.34!ZNF280D;;chr16:30569604..30569629,-!p3@ZNF764!0.20!1.34!ZNF764;;chr1:158985493..158985535,+!p4@IFI16!0.20!1.34!IFI16;;chr4:87928105..87928126,+!p13@AFF1!0.20!1.34!AFF1;;chr11:6947647..6947698,+!p2@ZNF215!0.20!1.12!ZNF215;;chrX:84498989..84499003,+!p1@ZNF711!0.20!1.12!ZNF711;;chr1:158979680..158979683,+!p9@IFI16!0.20!1.12!IFI16;;chr16:30546275..30546297,-!p2@ZNF747!0.20!1.12!ZNF747;;chr15:37392593..37392607,-!p13@MEIS2!0.20!0.89!MEIS2;;chr19:36980474..36980485,-!p4@ZNF566!0.20!0.89!ZNF566;;chr10:22292509..22292523,-!p4@DNAJC1!0.20!0.89!DNAJC1;; | ||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
Line 36: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10400-106A4 | |id=FF:10400-106A4 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883 | |is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10723 | |||
|library_id_phase_based=2:CNhs10723 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10400 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10400 | |||
|name=acute myeloid leukemia (FAB M5) cell line:THP-1 (revived) | |name=acute myeloid leukemia (FAB M5) cell line:THP-1 (revived) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10723,LSID691,release008,COMPLETED | |profile_hcage=CNhs10723,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0.326003978124479,0,0.165685948038092,0.0876664805795525,-0.116787901863639,-0.282403560576942,0,0,0,0,0,0,0,0,0,0.0876664805795525,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0.36007328402346,0,0,0,0,0,-0.121957035316301,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.566332977255099,0,-0.00947015499158227,0.0876664805795525,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.160574230329875,0,0,0.0876664805795525,0,0,0,0,0.111491905590767,0,0,0,0,0,-0.391504348009836,0,0,0,0.319555183105718,-0.130910287530932,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0160864787575235,0,0,0,-0.152701961220218,-0.442362558086961,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 59: | Line 78: | ||
|rna_weight_ug=49.432 | |rna_weight_ug=49.432 | ||
|sample_age=1 | |sample_age=1 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=THP-1 | |sample_cell_line=THP-1 | ||
Line 80: | Line 100: | ||
|top_motifs=MYB:2.43481198124;E2F1..5:1.72879375763;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.48630102769;YY1:1.44084424573;NANOG:1.3793160003;NFY{A,B,C}:1.13259634578;NRF1:1.00330389517;ELF1,2,4:0.995537968108;DMAP1_NCOR{1,2}_SMARC:0.958015971078;FOXA2:0.949648249069;ELK1,4_GABP{A,B1}:0.949470254901;NR6A1:0.923397465491;PPARG:0.912407326694;SPIB:0.904205573025;STAT1,3:0.89275731707;CUX2:0.861423225238;SPI1:0.860284817925;POU5F1:0.841353283133;FOXP3:0.808804975761;NKX2-2,8:0.786203983355;CRX:0.780321610627;NFIL3:0.727680534828;PAX5:0.687179875423;RFX2..5_RFXANK_RFXAP:0.669047837818;ARID5B:0.628458860763;ZNF143:0.619876788142;PRRX1,2:0.586267343524;BREu{core}:0.575215497405;NKX3-2:0.561778004826;ETS1,2:0.557731499892;POU1F1:0.530785780462;NANOG{mouse}:0.515550076987;OCT4_SOX2{dimer}:0.488239481312;AIRE:0.421619388138;NR5A1,2:0.41322278795;GATA6:0.391512655064;HOX{A6,A7,B6,B7}:0.383266402089;TEF:0.346781214846;EN1,2:0.340725519968;HOX{A4,D4}:0.322659446078;HOX{A5,B5}:0.314453803713;ALX1:0.289362367156;CDX1,2,4:0.24865393318;CEBPA,B_DDIT3:0.229846256718;MYOD1:0.228405393985;POU2F1..3:0.204503659789;NKX2-3_NKX2-5:0.190366505027;HBP1_HMGB_SSRP1_UBTF:0.182229530088;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.172972575476;PAX8:0.166469396416;RXRA_VDR{dimer}:0.152329956125;GCM1,2:0.148988369424;HLF:0.136435721992;RUNX1..3:0.128767661529;GFI1:0.110115537841;HNF4A_NR2F1,2:0.108444507216;PRDM1:0.0953417428251;bHLH_family:0.0795230065256;AR:0.043308115137;NKX3-1:0.0270905276529;SOX{8,9,10}:0.0116607665357;DBP:-0.00105628980506;FOXN1:-0.00170432739049;KLF4:-0.0062411111519;PAX3,7:-0.0114899713883;SREBF1,2:-0.0222551634876;SRF:-0.0298802891082;ESRRA:-0.0458440792387;HNF1A:-0.0583561100279;STAT5{A,B}:-0.0702797052929;FOXQ1:-0.0748444490127;IRF1,2:-0.0778933965202;HAND1,2:-0.0845316256699;TFDP1:-0.0872055371437;IRF7:-0.0977912732027;TAL1_TCF{3,4,12}:-0.0996273249719;HES1:-0.10914250374;NFE2L2:-0.12866101238;MTF1:-0.153155134946;EP300:-0.158481905828;RORA:-0.1794746848;TGIF1:-0.191531996199;REST:-0.193874354363;SOX17:-0.196028491178;IKZF2:-0.20741699692;POU3F1..4:-0.212590567774;MEF2{A,B,C,D}:-0.218558791942;PBX1:-0.219040592649;NFE2L1:-0.226596795903;ZEB1:-0.234005427222;CREB1:-0.245430889035;VSX1,2:-0.255710219306;LEF1_TCF7_TCF7L1,2:-0.270538212581;ZFP161:-0.275988873742;PAX2:-0.279690406259;NKX2-1,4:-0.291398891084;GATA4:-0.295241991974;MYBL2:-0.29605757127;PITX1..3:-0.297855560785;SOX5:-0.317500804041;ATF5_CREB3:-0.324824909401;NFKB1_REL_RELA:-0.329650114095;ZNF238:-0.33193895245;POU6F1:-0.351333131672;FOXP1:-0.365847958522;RBPJ:-0.369717530823;ESR1:-0.376640873316;ZNF423:-0.397627800599;HIF1A:-0.404379147931;NFE2:-0.413129658604;PDX1:-0.425173416093;FOS_FOS{B,L1}_JUN{B,D}:-0.435241388834;TOPORS:-0.439115766823;FOSL2:-0.442513790472;FOX{F1,F2,J1}:-0.448817378938;HMGA1,2:-0.44952704847;TFAP2{A,C}:-0.452403930661;HSF1,2:-0.458353708027;TLX2:-0.466475118665;LMO2:-0.467817742037;AHR_ARNT_ARNT2:-0.478239145928;NR1H4:-0.497555691465;XBP1:-0.510281936413;PAX4:-0.51464806866;PAX6:-0.534323835394;FOXD3:-0.539798577028;MTE{core}:-0.54361523253;BACH2:-0.546904131577;RFX1:-0.55156460866;T:-0.563970255552;SNAI1..3:-0.575653658252;NHLH1,2:-0.594059343195;XCPE1{core}:-0.596242440343;TFAP4:-0.604801996298;TBX4,5:-0.608156670032;EVI1:-0.614165132425;LHX3,4:-0.630745763935;MZF1:-0.631871351754;ZNF148:-0.633116318428;SPZ1:-0.638836201282;MYFfamily:-0.639440299864;PAX1,9:-0.656750258537;ONECUT1,2:-0.675146316544;ATF4:-0.676394662342;ATF6:-0.682313663819;ATF2:-0.692099256158;ZBTB16:-0.693633434461;TBP:-0.697737343357;IKZF1:-0.698257880139;HOXA9_MEIS1:-0.700038041825;NKX6-1,2:-0.707490778661;ADNP_IRX_SIX_ZHX:-0.708831742161;GZF1:-0.717810346801;RXR{A,B,G}:-0.752077575954;FOXM1:-0.763270441666;GTF2I:-0.795509065664;UFEwm:-0.833947346656;NFIX:-0.88540937482;MED-1{core}:-0.891668395412;SOX2:-0.911904550119;ZBTB6:-0.918135901848;ZNF384:-0.929152936628;GTF2A1,2:-0.936282361781;TP53:-0.940819728954;NR3C1:-0.949570620092;SP1:-0.958125777406;FOXL1:-0.967318759732;HIC1:-0.977689804579;TEAD1:-0.999815021122;EGR1..3:-1.02299863976;MAFB:-1.03418599985;ZIC1..3:-1.05579760389;STAT2,4,6:-1.06161082622;TLX1..3_NFIC{dimer}:-1.07701758825;FOXO1,3,4:-1.08799080385;FOX{I1,J2}:-1.08993748505;EBF1:-1.09429985037;MAZ:-1.11714659045;TFAP2B:-1.11916094842;RREB1:-1.1268211775;PATZ1:-1.22766385297;HMX1:-1.23919660193;GLI1..3:-1.24082480676;TFCP2:-1.29112145887;NFATC1..3:-1.29216605485;GFI1B:-1.30547150329;JUN:-1.3446638255;CDC5L:-1.38639678317;BPTF:-1.40422757256;ALX4:-1.43159225749;SMAD1..7,9:-1.55715965489;FOX{D1,D2}:-1.61591336182 | |top_motifs=MYB:2.43481198124;E2F1..5:1.72879375763;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.48630102769;YY1:1.44084424573;NANOG:1.3793160003;NFY{A,B,C}:1.13259634578;NRF1:1.00330389517;ELF1,2,4:0.995537968108;DMAP1_NCOR{1,2}_SMARC:0.958015971078;FOXA2:0.949648249069;ELK1,4_GABP{A,B1}:0.949470254901;NR6A1:0.923397465491;PPARG:0.912407326694;SPIB:0.904205573025;STAT1,3:0.89275731707;CUX2:0.861423225238;SPI1:0.860284817925;POU5F1:0.841353283133;FOXP3:0.808804975761;NKX2-2,8:0.786203983355;CRX:0.780321610627;NFIL3:0.727680534828;PAX5:0.687179875423;RFX2..5_RFXANK_RFXAP:0.669047837818;ARID5B:0.628458860763;ZNF143:0.619876788142;PRRX1,2:0.586267343524;BREu{core}:0.575215497405;NKX3-2:0.561778004826;ETS1,2:0.557731499892;POU1F1:0.530785780462;NANOG{mouse}:0.515550076987;OCT4_SOX2{dimer}:0.488239481312;AIRE:0.421619388138;NR5A1,2:0.41322278795;GATA6:0.391512655064;HOX{A6,A7,B6,B7}:0.383266402089;TEF:0.346781214846;EN1,2:0.340725519968;HOX{A4,D4}:0.322659446078;HOX{A5,B5}:0.314453803713;ALX1:0.289362367156;CDX1,2,4:0.24865393318;CEBPA,B_DDIT3:0.229846256718;MYOD1:0.228405393985;POU2F1..3:0.204503659789;NKX2-3_NKX2-5:0.190366505027;HBP1_HMGB_SSRP1_UBTF:0.182229530088;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.172972575476;PAX8:0.166469396416;RXRA_VDR{dimer}:0.152329956125;GCM1,2:0.148988369424;HLF:0.136435721992;RUNX1..3:0.128767661529;GFI1:0.110115537841;HNF4A_NR2F1,2:0.108444507216;PRDM1:0.0953417428251;bHLH_family:0.0795230065256;AR:0.043308115137;NKX3-1:0.0270905276529;SOX{8,9,10}:0.0116607665357;DBP:-0.00105628980506;FOXN1:-0.00170432739049;KLF4:-0.0062411111519;PAX3,7:-0.0114899713883;SREBF1,2:-0.0222551634876;SRF:-0.0298802891082;ESRRA:-0.0458440792387;HNF1A:-0.0583561100279;STAT5{A,B}:-0.0702797052929;FOXQ1:-0.0748444490127;IRF1,2:-0.0778933965202;HAND1,2:-0.0845316256699;TFDP1:-0.0872055371437;IRF7:-0.0977912732027;TAL1_TCF{3,4,12}:-0.0996273249719;HES1:-0.10914250374;NFE2L2:-0.12866101238;MTF1:-0.153155134946;EP300:-0.158481905828;RORA:-0.1794746848;TGIF1:-0.191531996199;REST:-0.193874354363;SOX17:-0.196028491178;IKZF2:-0.20741699692;POU3F1..4:-0.212590567774;MEF2{A,B,C,D}:-0.218558791942;PBX1:-0.219040592649;NFE2L1:-0.226596795903;ZEB1:-0.234005427222;CREB1:-0.245430889035;VSX1,2:-0.255710219306;LEF1_TCF7_TCF7L1,2:-0.270538212581;ZFP161:-0.275988873742;PAX2:-0.279690406259;NKX2-1,4:-0.291398891084;GATA4:-0.295241991974;MYBL2:-0.29605757127;PITX1..3:-0.297855560785;SOX5:-0.317500804041;ATF5_CREB3:-0.324824909401;NFKB1_REL_RELA:-0.329650114095;ZNF238:-0.33193895245;POU6F1:-0.351333131672;FOXP1:-0.365847958522;RBPJ:-0.369717530823;ESR1:-0.376640873316;ZNF423:-0.397627800599;HIF1A:-0.404379147931;NFE2:-0.413129658604;PDX1:-0.425173416093;FOS_FOS{B,L1}_JUN{B,D}:-0.435241388834;TOPORS:-0.439115766823;FOSL2:-0.442513790472;FOX{F1,F2,J1}:-0.448817378938;HMGA1,2:-0.44952704847;TFAP2{A,C}:-0.452403930661;HSF1,2:-0.458353708027;TLX2:-0.466475118665;LMO2:-0.467817742037;AHR_ARNT_ARNT2:-0.478239145928;NR1H4:-0.497555691465;XBP1:-0.510281936413;PAX4:-0.51464806866;PAX6:-0.534323835394;FOXD3:-0.539798577028;MTE{core}:-0.54361523253;BACH2:-0.546904131577;RFX1:-0.55156460866;T:-0.563970255552;SNAI1..3:-0.575653658252;NHLH1,2:-0.594059343195;XCPE1{core}:-0.596242440343;TFAP4:-0.604801996298;TBX4,5:-0.608156670032;EVI1:-0.614165132425;LHX3,4:-0.630745763935;MZF1:-0.631871351754;ZNF148:-0.633116318428;SPZ1:-0.638836201282;MYFfamily:-0.639440299864;PAX1,9:-0.656750258537;ONECUT1,2:-0.675146316544;ATF4:-0.676394662342;ATF6:-0.682313663819;ATF2:-0.692099256158;ZBTB16:-0.693633434461;TBP:-0.697737343357;IKZF1:-0.698257880139;HOXA9_MEIS1:-0.700038041825;NKX6-1,2:-0.707490778661;ADNP_IRX_SIX_ZHX:-0.708831742161;GZF1:-0.717810346801;RXR{A,B,G}:-0.752077575954;FOXM1:-0.763270441666;GTF2I:-0.795509065664;UFEwm:-0.833947346656;NFIX:-0.88540937482;MED-1{core}:-0.891668395412;SOX2:-0.911904550119;ZBTB6:-0.918135901848;ZNF384:-0.929152936628;GTF2A1,2:-0.936282361781;TP53:-0.940819728954;NR3C1:-0.949570620092;SP1:-0.958125777406;FOXL1:-0.967318759732;HIC1:-0.977689804579;TEAD1:-0.999815021122;EGR1..3:-1.02299863976;MAFB:-1.03418599985;ZIC1..3:-1.05579760389;STAT2,4,6:-1.06161082622;TLX1..3_NFIC{dimer}:-1.07701758825;FOXO1,3,4:-1.08799080385;FOX{I1,J2}:-1.08993748505;EBF1:-1.09429985037;MAZ:-1.11714659045;TFAP2B:-1.11916094842;RREB1:-1.1268211775;PATZ1:-1.22766385297;HMX1:-1.23919660193;GLI1..3:-1.24082480676;TFCP2:-1.29112145887;NFATC1..3:-1.29216605485;GFI1B:-1.30547150329;JUN:-1.3446638255;CDC5L:-1.38639678317;BPTF:-1.40422757256;ALX4:-1.43159225749;SMAD1..7,9:-1.55715965489;FOX{D1,D2}:-1.61591336182 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10400-106A4;search_select_hide=table117:FF:10400-106A4 | |||
}} | }} |
Latest revision as of 13:59, 3 June 2020
Name: | acute myeloid leukemia (FAB M5) cell line:THP-1 (revived) |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10723 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10723
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10723
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0677 |
10 | 10 | 0.0245 |
100 | 100 | 0.281 |
101 | 101 | 0.399 |
102 | 102 | 0.633 |
103 | 103 | 0.182 |
104 | 104 | 0.533 |
105 | 105 | 0.817 |
106 | 106 | 0.0318 |
107 | 107 | 0.0735 |
108 | 108 | 0.211 |
109 | 109 | 0.0201 |
11 | 11 | 0.161 |
110 | 110 | 0.272 |
111 | 111 | 0.628 |
112 | 112 | 0.682 |
113 | 113 | 0.248 |
114 | 114 | 0.539 |
115 | 115 | 0.334 |
116 | 116 | 0.87 |
117 | 117 | 0.0653 |
118 | 118 | 0.116 |
119 | 119 | 0.782 |
12 | 12 | 0.724 |
120 | 120 | 0.469 |
121 | 121 | 0.763 |
122 | 122 | 0.0708 |
123 | 123 | 0.404 |
124 | 124 | 0.287 |
125 | 125 | 0.497 |
126 | 126 | 0.437 |
127 | 127 | 0.0458 |
128 | 128 | 0.0793 |
129 | 129 | 0.292 |
13 | 13 | 9.13312e-4 |
130 | 130 | 0.262 |
131 | 131 | 0.0167 |
132 | 132 | 0.867 |
133 | 133 | 0.438 |
134 | 134 | 0.496 |
135 | 135 | 0.227 |
136 | 136 | 0.124 |
137 | 137 | 0.353 |
138 | 138 | 0.965 |
139 | 139 | 0.669 |
14 | 14 | 0.812 |
140 | 140 | 0.0446 |
141 | 141 | 0.706 |
142 | 142 | 0.553 |
143 | 143 | 0.445 |
144 | 144 | 0.787 |
145 | 145 | 0.711 |
146 | 146 | 0.806 |
147 | 147 | 0.0927 |
148 | 148 | 0.05 |
149 | 149 | 0.0894 |
15 | 15 | 0.303 |
150 | 150 | 0.741 |
151 | 151 | 0.429 |
152 | 152 | 0.0417 |
153 | 153 | 0.764 |
154 | 154 | 0.547 |
155 | 155 | 0.204 |
156 | 156 | 0.823 |
157 | 157 | 0.64 |
158 | 158 | 0.512 |
159 | 159 | 0.43 |
16 | 16 | 0.828 |
160 | 160 | 0.848 |
161 | 161 | 0.0525 |
162 | 162 | 0.625 |
163 | 163 | 0.668 |
164 | 164 | 0.503 |
165 | 165 | 0.013 |
166 | 166 | 0.382 |
167 | 167 | 0.564 |
168 | 168 | 0.904 |
169 | 169 | 0.932 |
17 | 17 | 0.504 |
18 | 18 | 0.738 |
19 | 19 | 0.752 |
2 | 2 | 0.218 |
20 | 20 | 0.386 |
21 | 21 | 0.484 |
22 | 22 | 0.672 |
23 | 23 | 0.0104 |
24 | 24 | 0.0272 |
25 | 25 | 0.294 |
26 | 26 | 0.707 |
27 | 27 | 0.402 |
28 | 28 | 0.913 |
29 | 29 | 0.0233 |
3 | 3 | 0.0241 |
30 | 30 | 0.2 |
31 | 31 | 0.408 |
32 | 32 | 0.0807 |
33 | 33 | 0.502 |
34 | 34 | 0.718 |
35 | 35 | 0.651 |
36 | 36 | 0.0573 |
37 | 37 | 0.342 |
38 | 38 | 0.271 |
39 | 39 | 0.23 |
4 | 4 | 0.239 |
40 | 40 | 0.278 |
41 | 41 | 0.956 |
42 | 42 | 0.1 |
43 | 43 | 0.831 |
44 | 44 | 0.606 |
45 | 45 | 0.348 |
46 | 46 | 0.293 |
47 | 47 | 0.0603 |
48 | 48 | 0.0508 |
49 | 49 | 0.735 |
5 | 5 | 0.919 |
50 | 50 | 0.795 |
51 | 51 | 0.775 |
52 | 52 | 0.0907 |
53 | 53 | 0.656 |
54 | 54 | 0.609 |
55 | 55 | 0.717 |
56 | 56 | 0.609 |
57 | 57 | 0.307 |
58 | 58 | 0.204 |
59 | 59 | 0.562 |
6 | 6 | 0.491 |
60 | 60 | 0.454 |
61 | 61 | 0.199 |
62 | 62 | 0.409 |
63 | 63 | 0.984 |
64 | 64 | 0.311 |
65 | 65 | 0.577 |
66 | 66 | 0.00289 |
67 | 67 | 0.401 |
68 | 68 | 0.0883 |
69 | 69 | 0.623 |
7 | 7 | 0.0754 |
70 | 70 | 0.188 |
71 | 71 | 0.106 |
72 | 72 | 0.943 |
73 | 73 | 0.844 |
74 | 74 | 0.775 |
75 | 75 | 0.0524 |
76 | 76 | 0.184 |
77 | 77 | 0.65 |
78 | 78 | 0.0206 |
79 | 79 | 0.241 |
8 | 8 | 0.563 |
80 | 80 | 0.499 |
81 | 81 | 0.422 |
82 | 82 | 0.824 |
83 | 83 | 0.396 |
84 | 84 | 0.831 |
85 | 85 | 0.0324 |
86 | 86 | 0.67 |
87 | 87 | 0.0226 |
88 | 88 | 0.387 |
89 | 89 | 0.617 |
9 | 9 | 0.407 |
90 | 90 | 0.0502 |
91 | 91 | 0.0439 |
92 | 92 | 0.101 |
93 | 93 | 0.765 |
94 | 94 | 0.708 |
95 | 95 | 0.00312 |
96 | 96 | 0.764 |
97 | 97 | 0.614 |
98 | 98 | 0.685 |
99 | 99 | 0.33 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10723
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101370 THP-1 cell sample
FF:0101883 acute myeloid leukemia cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101370 (THP-1 cell sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0102332 (monocytic leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)