FF:10409-106B4: Difference between revisions

Latest revision as of 13:59, 3 June 2020

Name:	chronic myelogenous leukemia cell line:KU812
Species:	Human (Homo sapiens)
Library ID:	CNhs10727
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	unknown
cell type	basophil progenitor cell
cell line	KU812
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005883

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10727		CAGE		DRX007859		DRR008731

Accession ID Hg19

Library id		BAM		CTSS
CNhs10727		DRZ000156		DRZ001541

Accession ID Hg38

Library id		BAM		CTSS
CNhs10727		DRZ011506		DRZ012891

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0485
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.616
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0.0641
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0.12
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.131
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0401
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.214
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	1.026
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.294
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0.0641
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.572
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.254
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.429
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0.0641
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.182
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0.145
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10727

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.377
MA0003.1	MA0003.1	0.784
MA0004.1	MA0004.1	0.12
MA0006.1	MA0006.1	0.165
MA0007.1	MA0007.1	0.608
MA0009.1	MA0009.1	0.509
MA0014.1	MA0014.1	0.594
MA0017.1	MA0017.1	0.361
MA0018.2	MA0018.2	0.0234
MA0019.1	MA0019.1	0.534
MA0024.1	MA0024.1	3.48453e-6
MA0025.1	MA0025.1	0.442
MA0027.1	MA0027.1	0.3
MA0028.1	MA0028.1	1.50806e-7
MA0029.1	MA0029.1	3.31368e-5
MA0030.1	MA0030.1	0.361
MA0031.1	MA0031.1	0.0481
MA0035.2	MA0035.2	6.88529e-24
MA0038.1	MA0038.1	0.8
MA0039.2	MA0039.2	0.415
MA0040.1	MA0040.1	0.0682
MA0041.1	MA0041.1	0.286
MA0042.1	MA0042.1	0.792
MA0043.1	MA0043.1	0.107
MA0046.1	MA0046.1	0.8
MA0047.2	MA0047.2	0.647
MA0048.1	MA0048.1	0.265
MA0050.1	MA0050.1	0.694
MA0051.1	MA0051.1	0.56
MA0052.1	MA0052.1	0.00502
MA0055.1	MA0055.1	0.0103
MA0057.1	MA0057.1	0.744
MA0058.1	MA0058.1	0.156
MA0059.1	MA0059.1	0.00641
MA0060.1	MA0060.1	4.94666e-17
MA0061.1	MA0061.1	0.803
MA0062.2	MA0062.2	9.24967e-13
MA0065.2	MA0065.2	0.124
MA0066.1	MA0066.1	0.812
MA0067.1	MA0067.1	0.897
MA0068.1	MA0068.1	0.141
MA0069.1	MA0069.1	0.523
MA0070.1	MA0070.1	0.247
MA0071.1	MA0071.1	0.625
MA0072.1	MA0072.1	0.00621
MA0073.1	MA0073.1	0.692
MA0074.1	MA0074.1	0.528
MA0076.1	MA0076.1	4.2937e-9
MA0077.1	MA0077.1	0.414
MA0078.1	MA0078.1	0.601
MA0079.2	MA0079.2	0.633
MA0080.2	MA0080.2	3.2434e-7
MA0081.1	MA0081.1	0.0109
MA0083.1	MA0083.1	0.468
MA0084.1	MA0084.1	0.528
MA0087.1	MA0087.1	0.0889
MA0088.1	MA0088.1	7.84851e-4
MA0090.1	MA0090.1	0.0118
MA0091.1	MA0091.1	0.84
MA0092.1	MA0092.1	0.544
MA0093.1	MA0093.1	0.118
MA0099.2	MA0099.2	0.00139
MA0100.1	MA0100.1	4.10559e-4
MA0101.1	MA0101.1	0.487
MA0102.2	MA0102.2	0.209
MA0103.1	MA0103.1	0.749
MA0104.2	MA0104.2	9.02252e-6
MA0105.1	MA0105.1	0.0303
MA0106.1	MA0106.1	0.918
MA0107.1	MA0107.1	0.0498
MA0108.2	MA0108.2	0.359
MA0111.1	MA0111.1	0.415
MA0112.2	MA0112.2	0.69
MA0113.1	MA0113.1	0.387
MA0114.1	MA0114.1	0.204
MA0115.1	MA0115.1	0.383
MA0116.1	MA0116.1	0.00285
MA0117.1	MA0117.1	0.784
MA0119.1	MA0119.1	0.287
MA0122.1	MA0122.1	0.757
MA0124.1	MA0124.1	0.659
MA0125.1	MA0125.1	0.931
MA0131.1	MA0131.1	0.27
MA0135.1	MA0135.1	0.934
MA0136.1	MA0136.1	1.69741e-6
MA0137.2	MA0137.2	0.0345
MA0138.2	MA0138.2	0.643
MA0139.1	MA0139.1	0.459
MA0140.1	MA0140.1	1.44004e-42
MA0141.1	MA0141.1	0.796
MA0142.1	MA0142.1	0.757
MA0143.1	MA0143.1	0.651
MA0144.1	MA0144.1	0.487
MA0145.1	MA0145.1	0.508
MA0146.1	MA0146.1	0.329
MA0147.1	MA0147.1	1.02022e-6
MA0148.1	MA0148.1	0.582
MA0149.1	MA0149.1	0.118
MA0150.1	MA0150.1	0.639
MA0152.1	MA0152.1	0.495
MA0153.1	MA0153.1	0.234
MA0154.1	MA0154.1	0.271
MA0155.1	MA0155.1	0.616
MA0156.1	MA0156.1	3.4264e-9
MA0157.1	MA0157.1	0.0028
MA0159.1	MA0159.1	0.674
MA0160.1	MA0160.1	0.445
MA0162.1	MA0162.1	0.964
MA0163.1	MA0163.1	5.42934e-10
MA0164.1	MA0164.1	0.978
MA0258.1	MA0258.1	0.677
MA0259.1	MA0259.1	0.00512

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10727

Novel motif	Logo	P-value
1	1	0.165
10	10	0.0148
100	100	0.704
101	101	0.236
102	102	0.528
103	103	0.721
104	104	0.559
105	105	0.492
106	106	0.217
107	107	0.502
108	108	0.374
109	109	0.0433
11	11	0.155
110	110	0.157
111	111	0.0557
112	112	0.0705
113	113	0.694
114	114	0.49
115	115	0.0834
116	116	0.974
117	117	0.0672
118	118	0.961
119	119	0.307
12	12	0.933
120	120	0.676
121	121	0.566
122	122	0.911
123	123	0.655
124	124	0.0181
125	125	0.567
126	126	0.32
127	127	0.494
128	128	0.25
129	129	0.865
13	13	0.00505
130	130	0.00929
131	131	0.423
132	132	0.407
133	133	0.18
134	134	0.841
135	135	0.514
136	136	0.0478
137	137	0.694
138	138	0.626
139	139	0.537
14	14	0.298
140	140	0.828
141	141	0.308
142	142	0.458
143	143	0.208
144	144	0.609
145	145	0.537
146	146	0.358
147	147	0.101
148	148	0.848
149	149	0.141
15	15	0.484
150	150	0.978
151	151	0.524
152	152	0.0466
153	153	0.847
154	154	0.989
155	155	0.0894
156	156	0.64
157	157	0.741
158	158	0.88
159	159	0.364
16	16	0.312
160	160	0.343
161	161	0.403
162	162	0.907
163	163	0.238
164	164	0.12
165	165	0.797
166	166	0.336
167	167	0.433
168	168	0.779
169	169	0.674
17	17	0.741
18	18	0.269
19	19	0.801
2	2	0.225
20	20	0.164
21	21	0.927
22	22	0.845
23	23	0.0146
24	24	0.554
25	25	0.185
26	26	0.504
27	27	0.499
28	28	0.492
29	29	0.0438
3	3	0.303
30	30	0.0201
31	31	0.175
32	32	0.0119
33	33	0.116
34	34	0.607
35	35	0.632
36	36	0.0225
37	37	0.479
38	38	0.863
39	39	0.489
4	4	0.0214
40	40	0.182
41	41	0.899
42	42	0.373
43	43	0.481
44	44	0.575
45	45	0.74
46	46	0.553
47	47	0.0966
48	48	0.191
49	49	0.084
5	5	0.57
50	50	0.998
51	51	0.638
52	52	0.265
53	53	0.164
54	54	0.586
55	55	0.351
56	56	0.98
57	57	0.487
58	58	0.169
59	59	0.878
6	6	0.959
60	60	0.753
61	61	0.342
62	62	0.29
63	63	0.981
64	64	0.427
65	65	0.328
66	66	2.6691e-9
67	67	0.802
68	68	0.257
69	69	0.866
7	7	0.0267
70	70	0.383
71	71	0.0707
72	72	0.865
73	73	0.453
74	74	0.542
75	75	0.0456
76	76	0.235
77	77	0.187
78	78	0.0323
79	79	0.0851
8	8	0.89
80	80	0.435
81	81	0.943
82	82	0.819
83	83	0.401
84	84	0.893
85	85	0.183
86	86	0.987
87	87	0.199
88	88	0.503
89	89	0.391
9	9	0.873
90	90	0.304
91	91	0.12
92	92	0.261
93	93	0.89
94	94	0.568
95	95	0.0322
96	96	0.941
97	97	0.341
98	98	0.322
99	99	0.471

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10727

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100732 KU-812 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100732 (KU-812 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005883
+|accession_numbers=CAGE;DRX007859;DRR008731;DRZ000156;DRZ001541;DRZ011506;DRZ012891
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.61!403.54!GATA2;;chr6:135502501..135502546,+!p1@MYB!2.33!251.91!MYB;;chrX:48644984..48645005,+!p1@GATA1!2.22!165.93!GATA1;;chr12:54694758..54694805,-!p1@NFE2!2.12!156.71!NFE2;;chr6:135502408..135502459,+!p2@MYB!2.11!145.74!MYB;;chr9:20382446..20382493,-!p4@MLLT3!2.08!120.00!MLLT3;;chr19:12998003..12998021,-!p1@KLF1!2.07!117.61!KLF1;;chr9:135854091..135854159,+!p1@GFI1B!1.94!86.62!GFI1B;;chr12:54694807..54694832,-!p3@NFE2!1.85!69.61!NFE2;;chr19:13213511..13213545,-!p2@LYL1!1.84!73.43!LYL1;;chr6:135502472..135502489,+!p3@MYB!1.75!55.31!MYB;;chr21:39870339..39870443,-!p1@ERG!1.75!55.15!ERG;;chrY:21906594..21906622,-!p1@KDM5D!1.58!36.71!KDM5D;;chr3:128206762..128206781,-!p2@GATA2!1.57!217.74!GATA2;;chr6:29648890..29648944,-!p1@ZFP57!1.54!33.38!ZFP57;;chr21:36421535..36421610,-!p2@RUNX1!1.40!83.76!RUNX1;;chr7:115670804..115670825,-!p1@TFEC!1.36!21.93!TFEC;;chr12:54689532..54689551,-!p4@NFE2!1.35!21.14!NFE2;;chr5:88178983..88179012,-!p1@MEF2C!1.34!154.96!MEF2C;;chr2:68592406..68592424,+!p1@PLEK!1.32!20.03!PLEK;;chr8:128748308..128748324,+!p2@MYC!1.27!470.77!MYC;;chr2:145277640..145277771,-!p1@ZEB2!1.27!229.66!ZEB2;;chr1:47695003..47695042,-!p2@TAL1!1.26!17.32!TAL1;;chr11:47400078..47400106,-!p1@SPI1!1.26!17.17!SPI1;;chrX:48644976..48644983,+!p2@GATA1!1.26!17.01!GATA1;;chr11:120107344..120107351,+!p1@POU2F3!1.25!20.50!POU2F3;;chr10:94449703..94449718,+!p1@HHEX!1.23!60.87!HHEX;;chr8:60031619..60031676,-!p1@TOX!1.23!34.49!TOX;;chr6:15246200..15246214,+!p2@JARID2!1.22!42.75!JARID2;;chr7:50344289..50344323,+!p1@IKZF1!1.22!15.58!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!1.21!96.00!ELF1;;chr7:137620650..137620677,-!p3@CREB3L2!1.21!15.10!CREB3L2;;chr7:27205136..27205164,-!p1@HOXA9!1.21!15.10!HOXA9;;chr12:54694653..54694672,-!p2@NFE2!1.18!14.30!NFE2;;chr9:135854074..135854089,+!p2@GFI1B!1.16!13.35!GFI1B;;chr4:87857474..87857489,+!p7@AFF1!1.15!22.73!AFF1;;chr19:13213555..13213568,-!p5@LYL1!1.15!13.03!LYL1;;chr8:37963466..37963506,+!p3@ASH2L!1.14!15.89!ASH2L;;chr3:63953435..63953499,+!p1@ATXN7!1.14!12.87!ATXN7;;chr7:137620684..137620711,-!p4@CREB3L2!1.13!12.56!CREB3L2;;chr1:61548225..61548299,+!p1@NFIA!1.11!154.01!NFIA;;chr8:28748099..28748141,+!p2@HMBOX1!1.11!37.35!HMBOX1;;chr3:141747459..141747475,-!p1@TFDP2!1.10!97.11!TFDP2;;chr8:128747661..128747703,+!p6@MYC!1.10!15.73!MYC;;chr17:46622440..46622477,-!p5@HOXB2!1.10!13.03!HOXB2;;chr11:47400045..47400060,-!p6@SPI1!1.09!11.44!SPI1;;chrY:2803415..2803468,+!p1@ZFY!1.08!10.97!ZFY;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.81!TAL1;;chr5:88180342..88180365,-!p10@MEF2C!1.07!10.65!MEF2C;;chr7:50344251..50344288,+!p3@IKZF1!1.06!10.49!IKZF1;;chr9:135854058..135854072,+!p3@GFI1B!1.05!10.17!GFI1B;;chr4:109089901..109089930,-!p3@LEF1!1.05!10.17!LEF1;;chr10:94449675..94449694,+!p2@HHEX!1.04!27.18!HHEX;;chrX:48645010..48645015,+!p3@GATA1!1.04!10.01!GATA1;;chr15:67391010..67391046,+!p13@SMAD3!1.04!9.85!SMAD3;;chr17:40441354..40441410,+!p2@STAT5A!1.04!9.85!STAT5A;;chr5:88179017..88179046,-!p2@MEF2C!1.03!39.58!MEF2C;;chr4:87857433..87857472,+!p9@AFF1!1.03!17.48!AFF1;;chr12:54689552..54689574,-!p6@NFE2!1.03!9.70!NFE2;;chr6:144329500..144329526,-!p4@PLAGL1!1.02!22.57!PLAGL1;;chr12:54785074..54785122,-!p2@ZNF385A!1.02!14.62!ZNF385A;;chr12:11802547..11802560,+!p5@ETV6!1.02!13.35!ETV6;;chr4:109088940..109089037,-!p4@LEF1!1.01!9.22!LEF1;;chr6:20402102..20402152,+!p1@E2F3!1.00!38.14!E2F3;;chr11:47399947..47399961,-!p3@SPI1!1.00!9.06!SPI1;;chr11:128563948..128564003,+!p1@FLI1!0.99!107.60!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.99!13.19!LYL1;;chr17:38020392..38020477,-!p1@IKZF3!0.99!8.74!IKZF3;;chr6:28304275..28304282,-!p7@ZNF323!0.99!8.74!ZNF323;;chr1:92951607..92951661,-!p1@GFI1!0.98!8.58!GFI1;;chr11:47399996..47400014,-!p4@SPI1!0.97!8.42!SPI1;;chr7:50343634..50343717,+!p2@IKZF1!0.97!8.42!IKZF1;;chr7:27205106..27205134,-!p2@HOXA9!0.97!8.26!HOXA9;;chr6:144329531..144329546,-!p5@PLAGL1!0.96!13.19!PLAGL1;;chr18:22932080..22932170,-!p1@ZNF521!0.95!34.33!ZNF521;;chr7:50348268..50348366,+!p4@IKZF1!0.95!7.95!IKZF1;;chr1:61547894..61547968,+!p2@NFIA!0.94!23.05!NFIA;;chr17:46622205..46622218,-!p3@HOXB2!0.94!8.90!HOXB2;;chr4:109089436..109089456,-!p22@LEF1!0.94!7.63!LEF1;;chr2:60780607..60780624,-!p2@BCL11A!0.93!24.00!BCL11A;;chr20:50159198..50159299,-!p1@NFATC2!0.93!11.28!NFATC2;;chr19:13213465..13213478,-!p7@LYL1!0.93!7.47!LYL1;;chr17:40440481..40440550,+!p1@STAT5A!0.92!54.83!STAT5A;;chr2:185463247..185463263,+!p1@ZNF804A!0.91!12.87!ZNF804A;;chr8:60031682..60031710,-!p2@TOX!0.91!11.76!TOX;;chr4:87857491..87857519,+!p10@AFF1!0.91!10.01!AFF1;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!84.40!PLAGL1;;chr13:72441315..72441454,-!p1@DACH1!0.90!14.46!DACH1;;chr17:17726907..17726958,-!p2@SREBF1!0.89!43.55!SREBF1;;chr3:141747950..141748004,-!p7@TFDP2!0.89!6.83!TFDP2;;chr2:214013461..214013517,-!p6@IKZF2!0.89!6.68!IKZF2;;chr11:19263160..19263176,-!p1@E2F8!0.88!7.95!E2F8;;chr4:109089095..109089144,-!p6@LEF1!0.88!6.52!LEF1;;chr15:60884706..6088474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NF28!0.37!2.23!ZNF28;;chr1:27023752..27023799,+!p4@ARID1A!0.37!2.07!ARID1A;;chr4:144434814..144434932,+!p1@SMARCA5!0.36!103.94!SMARCA5;;chr13:20357063..20357105,-!p1@PSPC1!0.36!66.91!PSPC1;;chr14:64971461..64971542,+!p1@ZBTB1!0.36!41.64!ZBTB1;;chr1:91487553..91487612,-!p1@ZNF644!0.36!34.97!ZNF644;;chr1:67390665..67390698,+!p1@MIER1!0.36!28.45!MIER1;;chr10:124768300..124768334,-!p1@IKZF5!0.36!25.27!IKZF5;;chr14:64970494..64970578,-!p1@ZBTB25!0.36!20.50!ZBTB25;;chr19:58740266..58740297,+!p1@ZNF544!0.36!14.30!ZNF544;;chr11:123612319..123612395,-!p1@ZNF202!0.36!11.28!ZNF202;;chr19:44455368..44455396,+!p1@ZNF221!0.36!6.36!ZNF221;;chr6:28411241..28411284,-!p1@ZSCAN23!0.36!5.88!ZSCAN23;;chr19:36705617..36705644,+!p4@ZNF146!0.36!5.24!ZNF146;;chr19:37178482..37178520,+!p1@ZNF567!0.36!4.93!ZNF567;;chr1:226595648..226595659,-!p3@PARP1!0.36!2.70!PARP1;;chr11:6947647..6947698,+!p2@ZNF215!0.36!2.07!ZNF215;;chr12:11802909..11802920,+!p7@ETV6!0.36!2.07!ETV6;;chr19:58383174..58383178,-!p3@ZNF814!0.36!1.59!ZNF814;;chr19:50529307..50529323,+!p3@ZNF473!0.36!1.27!ZNF473;;chr1:47697859..47697869,-!p14@TAL1!0.36!1.27!TAL1;;chr20:52226313..52226350,-!p3@ZNF217!0.36!1.27!ZNF217;;chr12:11802957..11802964,+!p8@ETV6!0.36!1.27!ETV6;;chr13:46626764..46626775,-!p16@ZC3H13!0.36!1.27!ZC3H13;;chr17:40440359..40440386,+!p4@STAT5A!0.36!1.27!STAT5A;;chr17:7197911..7197964,-!p1@YBX2!0.36!1.27!YBX2;;chr19:13213954..13214021,-!p4@LYL1!0.36!1.27!LYL1;;chr5:88185175..88185197,-!p13@MEF2C!0.36!1.27!MEF2C;;chr7:63505799..63505904,+!p1@ZNF727!0.36!1.27!ZNF727;;chr2:178129619..178129633,-!p16@NFE2L2!0.36!1.27!NFE2L2;;chr2:242556880..242556899,-!p5@THAP4!0.36!1.27!THAP4;;chr3:24536332..24536358,-!p2@THRB!0.36!1.27!THRB;;chr17:30677160..30677200,+!p1@ZNF207!0.35!294.67!ZNF207;;chr14:65569186..65569243,-!p1@MAX!0.35!121.27!MAX;;chr10:60145155..60145206,+!p1@TFAM!0.35!88.85!TFAM;;chr11:695006..695074,-!p1@DEAF1!0.35!31.15!DEAF1;;chr16:68119250..68119293,+!p2@NFATC3!0.35!15.42!NFATC3;;chr11:62368696..62368759,-!p4@MTA2!0.35!12.08!MTA2;;chr19:19516507..19516539,+!p7@GATAD2A!0.35!5.40!GATAD2A;;chr21:34144115..34144138,-!p2@GCFC1!0.35!5.24!GCFC1;;chr8:86089369..86089408,+!p1@E2F5!0.35!4.77!E2F5;;chr4:87928328..87928351,+!p6@AFF1!0.35!4.61!AFF1;;chr4:146402843..146402864,+!p3@SMAD1!0.35!3.34!SMAD1;;chr19:56879534..56879615,+!p3@ZNF542!0.35!2.38!ZNF542;;chr11:67007611..67007622,+!p6@KDM2A!0.35!1.91!KDM2A;;chr19:6424813..6424835,-!p1@KHSRP!0.34!122.70!KHSRP;;chr12:50479109..50479146,+!p2@SMARCD1!0.34!33.38!SMARCD1;;chr4:87856129..87856186,+!p1@AFF1!0.34!26.70!AFF1;;chr19:19496728..19496813,+!p2@GATAD2A!0.34!23.36!GATAD2A;;chr12:95467267..95467350,-!p1@NR2C1!0.34!22.89!NR2C1;;chr19:57946684..57946723,+!p1@ZNF749!0.34!21.14!ZNF749;;chr19:37064145..37064216,-!p1@ZNF529!0.34!16.37!ZNF529;;chr1:167190091..167190156,+!p1@POU2F1!0.34!15.26!POU2F1;;chr19:12721513..12721572,-!p1@ZNF490!0.34!7.63!ZNF490;;chr13:41635285..41635356,-!p3@ELF1!0.34!7.47!ELF1;;chr19:56915668..56915732,+!p1@ZNF583!0.34!6.68!ZNF583;;chr2:178128250..178128293,-!p6@NFE2L2!0.34!4.29!NFE2L2;;chr14:74253834..74253862,-!p5@C14orf43!0.34!4.13!C14orf43;;chr18:47814010..47814021,-!p3@CXXC1!0.34!2.54!CXXC1;;chr15:77713299..77713316,+!p3@HMG20A!0.34!2.38!HMG20A;;chr6:56954905..56954915,+!p4@ZNF451!0.34!2.38!ZNF451;;chr19:53496806..53496848,-!p2@ZNF702P!0.34!2.23!ZNF702P;;chr4:331619..331630,+!p2@ZNF141!0.34!2.23!ZNF141;;chr1:211432593..211432642,+!p6@RCOR3!0.34!2.07!RCOR3;;chrX:131624056..131624069,-!p2@MBNL3!0.34!1.91!MBNL3;;chr18:14132422..14132440,-!p1@ZNF519!0.34!1.91!ZNF519;;chr8:106330696..106330719,+!p2@ZFPM2!0.34!1.75!ZFPM2;;chr8:28747944..28747955,+!p5@HMBOX1!0.34!1.59!HMBOX1;;chr1:158985469..158985489,+!p7@IFI16!0.34!1.59!IFI16;;chr17:80477571..80477637,+!p1@FOXK2!0.33!58.65!FOXK2;;chr7:137686791..137686821,-!p1@CREB3L2!0.33!55.15!CREB3L2;;chr1:27022485..27022543,+!p1@ARID1A!0.33!27.02!ARID1A;;chr19:59031131..59031193,-!p1@ZBTB45!0.33!24.64!ZBTB45;;chr15:77713222..77713271,+!p1@HMG20A!0.33!22.89!HMG20A;;chr1:247095194..247095235,-!p1@AHCTF1!0.33!20.18!AHCTF1;;chr19:12273866..12273935,+!p1@ZNF136!0.33!16.69!ZNF136;;chr14:74253865..74253917,-!p2@C14orf43!0.33!11.60!C14orf43;;chr19:35225121..35225175,+!p1@ZNF181!0.33!10.33!ZNF181;;chr19:19496624..19496660,+!p3@GATAD2A!0.33!8.11!GATAD2A;;chr4:87928353..87928401,+!p4@AFF1!0.33!7.95!AFF1;;chr19:44529479..44529542,+!p1@ZNF222,p1@ZNF284!0.33!7.79!ZNF222;;chr12:57504975..57505019,-!p2@STAT6!0.33!7.31!STAT6;;chr19:44439387..44439419,-!p2@ZNF45!0.33!6.52!ZNF45;;chr9:3525910..3525955,-!p4@RFX3!0.33!5.09!RFX3;;chr19:58446721..58446779,-!p1@ZNF418!0.33!4.61!ZNF418;;chr1:41174988..41175047,+!p4@NFYC!0.33!4.45!NFYC;;chr8:182424..182462,+!p1@ZNF596!0.33!4.29!ZNF596;;chr4:56412767..56412799,-!p3@CLOCK!0.33!3.66!CLOCK;;chr19:54024251..54024305,+!p4@ZNF331!0.33!2.38!ZNF331;;chr19:35455160..35455197,-!p2@ZNF792!0.33!2.23!ZNF792;;chr8:128750493..128750522,+!p10@MYC!0.33!2.07!MYC;;chr2:192015701..192015743,-!p1@STAT4!0.33!1.91!STAT4;;chr19:44764031..44764072,+!p1@ZNF233!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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aKU812.CNhs10727.10409-106B4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10409-106B4
 |is_a=EFO:0002091;;FF:0000210;;FF:0100732
 |is_obsolete=
+|library_id=CNhs10727
+|library_id_phase_based=2:CNhs10727
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10409
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10409
 |name=chronic myelogenous leukemia cell line:KU812
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10727,LSID691,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=106
 |rna_catalog_number=
@@ Line 61: / Line 78: @@
 |rna_weight_ug=59.6555
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB0495
 |sample_cell_line=KU812
@@ Line 82: / Line 100: @@
 |top_motifs=GATA6:4.74112467725;NFIX:2.92022482079;ZNF148:2.74797890579;MYB:2.25055392093;POU2F1..3:2.07320105229;STAT1,3:2.02602105264;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.72651463777;ALX1:1.6633399753;E2F1..5:1.47509002129;NFY{A,B,C}:1.42114142995;FOX{I1,J2}:1.34608864985;STAT5{A,B}:1.3246922467;ELF1,2,4:1.2496375995;IKZF2:1.21927887603;YY1:1.15232753132;ZNF143:1.13786789572;NANOG{mouse}:1.0659820752;bHLH_family:1.04363783218;ELK1,4_GABP{A,B1}:0.893377840915;RBPJ:0.843120033436;EN1,2:0.809035982717;TLX2:0.786052741878;NRF1:0.769423381252;PAX8:0.764786712849;PBX1:0.74392680343;ZBTB16:0.740770775377;DMAP1_NCOR{1,2}_SMARC:0.702438344642;BREu{core}:0.683244789744;SOX{8,9,10}:0.658825872669;HBP1_HMGB_SSRP1_UBTF:0.62655787729;CRX:0.624542783997;NR5A1,2:0.618306938936;SPIB:0.612740318557;NKX2-1,4:0.611186339423;CUX2:0.587795929635;PAX6:0.582817622914;PITX1..3:0.544050669354;RUNX1..3:0.493047103966;AR:0.478284350873;AHR_ARNT_ARNT2:0.474743369368;PRRX1,2:0.459623997762;VSX1,2:0.458641068909;ETS1,2:0.449942733729;PAX3,7:0.438523000677;OCT4_SOX2{dimer}:0.411862042431;SPI1:0.411030746137;POU6F1:0.400134576925;HOXA9_MEIS1:0.385728719299;HSF1,2:0.36497933796;POU3F1..4:0.357792881878;FOXP1:0.353534376037;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.320160760472;EVI1:0.312194390005;TOPORS:0.29465692937;NR1H4:0.280028621673;AIRE:0.274954349781;HIF1A:0.242276079412;HOX{A5,B5}:0.236619033039;SMAD1..7,9:0.224024968821;RORA:0.204891854607;FOXN1:0.189059220122;PDX1:0.110547840075;GZF1:0.105299433836;SOX17:0.10294591118;NR6A1:0.0835026610817;POU5F1:0.0771209841053;HAND1,2:0.0745662888784;NKX2-3_NKX2-5:0.0655364903174;ATF5_CREB3:0.0166943144396;POU1F1:0.00128924104282;NANOG:0.00127951219917;FOXP3:0.00116509215603;CDX1,2,4:-0.0192388527416;SNAI1..3:-0.0552642186506;HOX{A4,D4}:-0.0628936913822;HOX{A6,A7,B6,B7}:-0.0705327511092;MYOD1:-0.0783718946412;PPARG:-0.111571783485;TEF:-0.11738078011;PAX4:-0.127304430033;LEF1_TCF7_TCF7L1,2:-0.127828073268;MTF1:-0.149303923967;NFE2:-0.150955082251;FOXQ1:-0.163321531188;SOX2:-0.177914201148;T:-0.184391611713;PAX2:-0.186077270501;NHLH1,2:-0.189442854513;TBP:-0.192030730501;ONECUT1,2:-0.208365871706;NKX6-1,2:-0.214461878426;DBP:-0.218668118019;NKX3-1:-0.233635246;ATF4:-0.24335218777;ARID5B:-0.247547758053;RXRA_VDR{dimer}:-0.254947301037;NFKB1_REL_RELA:-0.257581896483;HNF4A_NR2F1,2:-0.27080389272;TFDP1:-0.279361024264;SREBF1,2:-0.30287950164;FOXA2:-0.30824252533;ZNF238:-0.326081578118;RFX2..5_RFXANK_RFXAP:-0.335496128872;ZFP161:-0.33659075904;ZEB1:-0.342983496379;HES1:-0.345326495055;HNF1A:-0.346114571941;GFI1:-0.348240202834;TGIF1:-0.385120075138;STAT2,4,6:-0.458141958431;IRF1,2:-0.465559633894;HMGA1,2:-0.490608164936;RXR{A,B,G}:-0.503087297731;REST:-0.51046399219;XBP1:-0.511936625082;CREB1:-0.515735447723;SRF:-0.519829003355;GCM1,2:-0.523078026642;BACH2:-0.524427099456;ZNF423:-0.533965462569;LHX3,4:-0.55051669704;FOSL2:-0.576310133411;BPTF:-0.576341304578;ESRRA:-0.579586833628;MEF2{A,B,C,D}:-0.582063066607;MYBL2:-0.597078864297;FOXM1:-0.614027394166;IRF7:-0.616014975145;MED-1{core}:-0.630011908942;RFX1:-0.632501267818;RREB1:-0.636610399375;FOS_FOS{B,L1}_JUN{B,D}:-0.638488010236;TLX1..3_NFIC{dimer}:-0.669230924213;NFE2L2:-0.672024208091;ADNP_IRX_SIX_ZHX:-0.681957017067;FOX{D1,D2}:-0.689426388369;PRDM1:-0.694030173535;GTF2I:-0.701117840349;SOX5:-0.707338751221;TFAP4:-0.713505291145;FOX{F1,F2,J1}:-0.715828196569;MYFfamily:-0.74789445575;GATA4:-0.76496537213;IKZF1:-0.787216243595;HMX1:-0.787700096584;EP300:-0.806589056149;PAX5:-0.80732453287;SPZ1:-0.808033290839;NKX3-2:-0.81043311781;ZNF384:-0.813993115957;XCPE1{core}:-0.814843745727;ATF2:-0.837520893218;KLF4:-0.846585995074;FOXO1,3,4:-0.856452461131;NFE2L1:-0.868179427056;NFATC1..3:-0.868571090715;CDC5L:-0.868704196781;ZBTB6:-0.873523381432;GLI1..3:-0.874202983133;GTF2A1,2:-0.904493541544;CEBPA,B_DDIT3:-0.914566650054;HIC1:-0.916951991669;HLF:-0.93319887161;PATZ1:-0.94421996434;MZF1:-0.952735346727;FOXD3:-0.956803448559;TEAD1:-0.990102911559;UFEwm:-0.996145863117;NKX2-2,8:-1.00184347825;NFIL3:-1.01004458833;MAFB:-1.05035856051;LMO2:-1.09412287152;ZIC1..3:-1.09810508385;TFAP2{A,C}:-1.11180762399;EGR1..3:-1.13093047416;MTE{core}:-1.14992211104;TP53:-1.15557683208;TAL1_TCF{3,4,12}:-1.20985647955;TBX4,5:-1.22274531104;MAZ:-1.25995877245;SP1:-1.27324770825;GFI1B:-1.28517974055;TFAP2B:-1.28718339442;EBF1:-1.29115521066;ESR1:-1.32105826446;PAX1,9:-1.332856947;NR3C1:-1.39454477752;FOXL1:-1.40153829031;ALX4:-1.47097220825;JUN:-1.49627724228;ATF6:-1.64947588191;TFCP2:-1.94508327408
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10409-106B4;search_select_hide=table117:FF:10409-106B4
 }}

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FF:10409-106B4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:59, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0