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{{f5samples
{{f5samples
|id=FF:10711-109H9
|DRA_sample_Accession=CAGE@SAMD00005056
|name=fibrous histiocytoma cell line:GCT TIB-223, biol_rep1
|accession_numbers=CAGE;DRX007887;DRR008759;DRZ000184;DRZ001569;DRZ011534;DRZ012919
|sample_id=10711
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000014,UBERON:0002097,UBERON:0002199,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0002416
|rna_tube_id=109H9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002320,CL:0002371,CL:0000766,CL:0000219,CL:0000054,CL:0000738,CL:0000255,CL:0002092,CL:0000137,CL:0000092
|rna_box=109
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:0060072,DOID:0060085,DOID:7,DOID:201,DOID:0060100,DOID:3165,DOID:0060121,DOID:200,DOID:2438,DOID:4305,DOID:4418
|rna_position=H9
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100583,FF:0100372,FF:0100969,FF:0103765,FF:0103766
|sample_cell_lot=
|comment=
|sample_cell_catalog=TIB-223
|created_by=
|sample_company=ATCC
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
|expression_enrichment_score=chr12:66218255..66218304,+!p3@HMGA2!2.04!281.18!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.79!265.28!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.76!80.08!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.64!80.68!HMGA2;;chr2:223163706..223163730,-!p1@PAX3!1.56!35.57!PAX3;;chr12:66218378..66218401,+!p6@HMGA2!1.54!51.67!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.48!29.41!FOXG1;;chr12:66218836..66218888,+!p1@HMGA2!1.45!241.24!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.43!32.59!HMGA2;;chr8:23564065..23564087,-!p1@NKX2-6!1.31!19.47!NKX2-6;;chr12:66218469..66218477,+!p16@HMGA2!1.28!18.08!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!1.26!17.29!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.24!24.24!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!1.21!18.28!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.20!57.03!FOSL1;;chr19:9811125..9811144,-!p2@ZNF812!1.17!13.71!ZNF812;;chr2:200322654..200322707,-!p2@SATB2!1.15!18.88!SATB2;;chr15:83953397..83953425,-!p1@BNC1!1.14!14.70!BNC1;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!16.10!TFAP2C;;chr12:66218152..66218174,+!p10@HMGA2!1.12!13.12!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!1.10!11.72!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!1.08!18.68!TFAP2A;;chr14:29236269..29236285,+!p3@FOXG1!1.08!11.13!FOXG1;;chr16:86544113..86544145,+!p1@FOXF1!1.03!12.12!FOXF1;;chr19:42636586..42636607,-!p1@POU2F2!1.02!26.83!POU2F2;;chr12:66218904..66218913,+!p11@HMGA2!1.02!9.54!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.01!9.34!HMGA2;;chr6:29648890..29648944,-!p1@ZFP57!1.00!8.94!ZFP57;;chr11:65667846..65667868,-!p1@FOSL1!0.99!234.28!FOSL1;;chr11:65686802..65686818,+!p6@DRAP1!0.99!15.50!DRAP1;;chr19:9609272..9609297,-!p1@ZNF560!0.97!8.35!ZNF560;;chr17:35294075..35294102,+!p1@ENST00000559335!0.96!8.15!LHX1;;chr3:169381420..169381535,-!p1@MECOM!0.95!9.34!MECOM;;chrX:132352373..132352384,-!p1@TFDP3!0.94!7.75!TFDP3;;chr6:34204921..34204939,+!p3@HMGA1!0.90!219.98!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.89!60.21!TBX3;;chr14:29236169..29236216,+!p6@FOXG1!0.89!6.76!FOXG1;;chr21:38071430..38071456,+!p1@SIM2!0.89!6.76!SIM2;;chr11:65686732..65686756,+!p2@DRAP1!0.87!28.61!DRAP1;;chr19:22235279..22235301,+!p1@ZNF257!0.87!12.52!ZNF257;;chr1:158985493..158985535,+!p4@IFI16!0.87!10.13!IFI16;;chr1:170633348..170633399,+!p2@PRRX1!0.87!8.94!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.87!6.36!SIM2;;chr12:66218923..66218934,+!p14@HMGA2!0.87!6.36!HMGA2;;chr17:8027418..8027432,-!p1@HES7!0.87!6.36!HES7;;chr6:10415276..10415341,-!p2@TFAP2A!0.85!7.55!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!0.85!6.16!HOXB6;;chr12:85673977..85674015,+!p1@ALX1!0.85!6.16!ALX1;;chr19:20188776..20188826,+!p1@ZNF90!0.84!16.69!ZNF90;;chr5:134369905..134369972,-!p1@PITX1!0.83!9.14!PITX1;;chr19:9811101..9811112,-!p3@ZNF812!0.83!5.76!ZNF812;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.83!5.76!HOXC5;;chr5:138609782..138609826,+!p5@MATR3!0.82!39.35!MATR3;;chr16:29818199..29818216,+!p11@MAZ!0.82!9.54!MAZ;;chr20:50179368..50179392,-!p2@NFATC2!0.82!7.35!NFATC2;;chr2:172949484..172949522,+!p1@DLX1!0.82!5.56!DLX1;;chr19:22034809..22034878,-!p2@ZNF43!0.81!20.27!ZNF43;;chr11:61520075..61520136,+!p1@C11orf9!0.81!12.12!C11orf9;;chr5:72744445..72744466,-!p2@FOXD1!0.81!9.54!FOXD1;;chr15:67418119..67418162,+!p5@SMAD3!0.81!6.16!SMAD3;;chr17:41623692..41623715,-!p1@ETV4!0.80!24.64!ETV4;;chr17:41622925..41622976,-!p3@ETV4!0.80!8.15!ETV4;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.55!HOXB7;;chr12:2986206..2986258,-!p2@FOXM1!0.79!34.18!FOXM1;;chr20:42543441..42543497,+!p1@TOX2!0.79!25.04!TOX2;;chr8:106330656..106330684,+!p1@ZFPM2!0.79!14.51!ZFPM2;;chr6:10412392..10412409,-!p4@TFAP2A!0.79!5.96!TFAP2A;;chr12:2986275..2986363,-!p1@FOXM1!0.78!55.64!FOXM1;;chr11:65687222..65687240,+!p7@DRAP1!0.78!6.56!DRAP1;;chr5:176738887..176738934,-!p1@MXD3!0.77!35.77!MXD3;;chr5:321810..321877,+!p1@AHRR!0.76!16.29!AHRR;;chr12:66218413..66218418,+!p17@HMGA2!0.76!4.77!HMGA2;;chr11:65687158..65687216,+!p4@DRAP1!0.75!29.21!DRAP1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.75!23.05!TAL1;;chr2:185463247..185463263,+!p1@ZNF804A!0.75!8.74!ZNF804A;;chr17:46622229..46622257,-!p6@HOXB2!0.75!5.56!HOXB2;;chr19:22193731..22193751,-!p1@ZNF208!0.75!4.57!ZNF208;;chr4:109089095..109089144,-!p6@LEF1!0.75!4.57!LEF1;;chr12:77459306..77459365,-!p1@E2F7!0.74!62.40!E2F7;;chr15:67418047..67418093,+!p4@SMAD3!0.73!5.76!SMAD3;;chr1:158985469..158985489,+!p7@IFI16!0.73!5.37!IFI16;;chr7:26191809..26191890,+!p1@NFE2L3!0.72!23.65!NFE2L3;;chr5:72744594..72744609,-!p1@FOXD1!0.72!21.46!FOXD1;;chr17:41277372..41277418,-!p1@BRCA1!0.72!16.89!BRCA1;;chr7:19157248..19157268,-!p1@TWIST1!0.71!12.52!TWIST1;;chr14:35872962..35873025,-!p3@NFKBIA!0.71!11.53!NFKBIA;;chr2:200323414..200323455,-!p1@SATB2!0.71!9.54!SATB2;;chr19:24097706..24097731,+!p2@ZNF726!0.71!8.54!ZNF726;;chr12:27485762..27485776,+!p3@ARNTL2!0.70!11.92!ARNTL2;;chr20:42543506..42543549,+!p2@TOX2!0.70!10.53!TOX2;;chr4:81118647..81118666,+!p1@PRDM8!0.70!5.56!PRDM8;;chr11:120107344..120107351,+!p1@POU2F3!0.70!4.97!POU2F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|sample_dev_stage=
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|sample_tissue=lung
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=29
|sample_ethnicity=
|rna_rin=
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|rna_od260/280=2.09000
|sample_cell_type=unclassifiable
|sample_cell_line=GCT TIB-223
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=fibrous histiocytoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=60.22016
|rna_concentration=1.28128
|sample_note=
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|ancestors_in_disease_facet=DOID:0050686,DOID:0060072,DOID:0060083,DOID:0060085,DOID:0060100,DOID:0060121,DOID:14566,DOID:162,DOID:200,DOID:201,DOID:2438,DOID:2531,DOID:3165,DOID:4,DOID:4305,DOID:4418,DOID:7
|sample_description=
 
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|fonse_cell_line=FF:0100583,FF:0103765
|fonse_cell_line_closure=FF:0100583,FF:0103765
|fonse_cell_line_closure=FF:0100583,FF:0103765
Line 67: Line 40:
|fonse_treatment=
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|fonse_treatment_closure=
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|id=FF:10711-109H9
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|is_obsolete=
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|microRNAs=
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10711
|name=fibrous histiocytoma cell line:GCT TIB-223
|namespace=FANTOM5
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|rna_box=109
|rna_catalog_number=
|rna_concentration=1.28128
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.17
|rna_od260/280=2.09
|rna_position=H9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=109H9
|rna_weight_ug=60.22016
|sample_age=29
|sample_category=cell lines
|sample_cell_catalog=TIB-223
|sample_cell_line=GCT TIB-223
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=fibrous histiocytoma
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.81017699416886e-276!GO:0043227;membrane-bound organelle;2.69400962917934e-230!GO:0043231;intracellular membrane-bound organelle;2.69400962917934e-230!GO:0043226;organelle;3.96397479318549e-230!GO:0043229;intracellular organelle;2.03174766023183e-229!GO:0005737;cytoplasm;8.09084174095754e-174!GO:0044422;organelle part;3.74232608658832e-169!GO:0044446;intracellular organelle part;2.83187084663239e-167!GO:0032991;macromolecular complex;1.07863951181493e-127!GO:0005634;nucleus;1.11600607058596e-118!GO:0044444;cytoplasmic part;1.18158889455081e-118!GO:0044237;cellular metabolic process;3.01283971455861e-109!GO:0030529;ribonucleoprotein complex;1.84056586426924e-107!GO:0043170;macromolecule metabolic process;2.62162773578508e-107!GO:0044238;primary metabolic process;2.91345271964092e-107!GO:0044428;nuclear part;1.88749678217413e-102!GO:0043233;organelle lumen;3.92529193499939e-91!GO:0031974;membrane-enclosed lumen;3.92529193499939e-91!GO:0003723;RNA binding;1.57094219391944e-88!GO:0005515;protein binding;5.43667645185056e-78!GO:0043283;biopolymer metabolic process;1.15453772814694e-68!GO:0005739;mitochondrion;1.52256158713738e-68!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.33048200462171e-64!GO:0043234;protein complex;6.13316979066098e-64!GO:0006396;RNA processing;4.88569346827245e-63!GO:0005840;ribosome;8.42983793171598e-63!GO:0006412;translation;8.70379606516791e-63!GO:0010467;gene expression;2.23111084103212e-62!GO:0031981;nuclear lumen;2.1248252748343e-61!GO:0016043;cellular component organization and biogenesis;2.51931482258369e-58!GO:0003735;structural constituent of ribosome;6.0918253576456e-55!GO:0019538;protein metabolic process;2.39833398062288e-54!GO:0044267;cellular protein metabolic process;1.05901741519226e-48!GO:0044260;cellular macromolecule metabolic process;4.17340378848885e-48!GO:0006259;DNA metabolic process;3.14007609610007e-47!GO:0031090;organelle membrane;1.44900629034906e-46!GO:0043228;non-membrane-bound organelle;3.23797845533441e-46!GO:0043232;intracellular non-membrane-bound organelle;3.23797845533441e-46!GO:0016071;mRNA metabolic process;2.37959190741187e-45!GO:0033279;ribosomal subunit;2.45041065459547e-45!GO:0044429;mitochondrial part;8.12391513936292e-45!GO:0009059;macromolecule biosynthetic process;1.7973077647286e-44!GO:0031967;organelle envelope;2.80412521488837e-44!GO:0044249;cellular biosynthetic process;3.01619405789081e-44!GO:0033036;macromolecule localization;4.10859183007986e-44!GO:0015031;protein transport;4.75430043609089e-44!GO:0031975;envelope;7.02012817139077e-44!GO:0006996;organelle organization and biogenesis;1.2235098616109e-43!GO:0008380;RNA splicing;3.38506859868692e-43!GO:0003676;nucleic acid binding;4.55516313102236e-42!GO:0009058;biosynthetic process;7.12913378474458e-41!GO:0045184;establishment of protein localization;1.31405651553877e-40!GO:0008104;protein localization;3.51716048486407e-40!GO:0006397;mRNA processing;9.57298358208242e-40!GO:0065003;macromolecular complex assembly;7.45898382051219e-39!GO:0046907;intracellular transport;9.5478906713245e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.23189062950423e-38!GO:0005829;cytosol;2.51920243774294e-38!GO:0005654;nucleoplasm;3.359783895991e-37!GO:0007049;cell cycle;4.24520347080729e-37!GO:0022607;cellular component assembly;1.66777790725379e-34!GO:0005681;spliceosome;6.32085456940035e-32!GO:0006886;intracellular protein transport;1.99153438432934e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.17885575431419e-31!GO:0044451;nucleoplasm part;1.30383372535479e-30!GO:0016070;RNA metabolic process;4.35768500606886e-30!GO:0000278;mitotic cell cycle;7.00477261512682e-29!GO:0000166;nucleotide binding;1.61627313829965e-28!GO:0022402;cell cycle process;2.09877869481842e-28!GO:0005740;mitochondrial envelope;4.69619116048491e-28!GO:0005694;chromosome;1.38303440175609e-27!GO:0051649;establishment of cellular localization;9.58294740113722e-27!GO:0051641;cellular localization;1.87200374748337e-26!GO:0031966;mitochondrial membrane;2.5219089852798e-26!GO:0019866;organelle inner membrane;4.99312034208461e-26!GO:0044427;chromosomal part;1.92789479419517e-25!GO:0005730;nucleolus;2.69392092520566e-25!GO:0006974;response to DNA damage stimulus;2.69392092520566e-25!GO:0015934;large ribosomal subunit;7.35875625910821e-25!GO:0044445;cytosolic part;8.63007737229885e-25!GO:0005743;mitochondrial inner membrane;9.28292150658916e-24!GO:0006119;oxidative phosphorylation;1.88137850745423e-23!GO:0022403;cell cycle phase;2.63757628788122e-23!GO:0000087;M phase of mitotic cell cycle;3.475921649991e-23!GO:0016462;pyrophosphatase activity;5.87987332515412e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.48831296416388e-23!GO:0007067;mitosis;8.85625967936698e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;1.26121133235827e-22!GO:0017111;nucleoside-triphosphatase activity;1.86678200436955e-22!GO:0006281;DNA repair;1.95630678453605e-22!GO:0051276;chromosome organization and biogenesis;1.16731455987162e-21!GO:0015935;small ribosomal subunit;1.18150836170674e-21!GO:0022618;protein-RNA complex assembly;1.68316020537014e-21!GO:0044455;mitochondrial membrane part;2.3148371957194e-21!GO:0006457;protein folding;6.06176948005023e-21!GO:0006260;DNA replication;9.48900364930665e-21!GO:0000279;M phase;1.40784900148904e-20!GO:0016874;ligase activity;7.92776603003327e-20!GO:0031980;mitochondrial lumen;1.28621317081137e-19!GO:0005759;mitochondrial matrix;1.28621317081137e-19!GO:0006512;ubiquitin cycle;1.44358864659282e-19!GO:0032553;ribonucleotide binding;1.907855280182e-19!GO:0032555;purine ribonucleotide binding;1.907855280182e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;2.56922579914318e-19!GO:0017076;purine nucleotide binding;2.65711726457878e-19!GO:0043285;biopolymer catabolic process;3.08270827318083e-19!GO:0019941;modification-dependent protein catabolic process;3.24776029442413e-19!GO:0043632;modification-dependent macromolecule catabolic process;3.24776029442413e-19!GO:0051301;cell division;3.45282654248591e-19!GO:0012505;endomembrane system;5.35750637560004e-19!GO:0044257;cellular protein catabolic process;5.55607775277496e-19!GO:0006511;ubiquitin-dependent protein catabolic process;6.28396622781386e-19!GO:0044265;cellular macromolecule catabolic process;1.95745937793865e-18!GO:0042254;ribosome biogenesis and assembly;2.13760607414319e-18!GO:0005746;mitochondrial respiratory chain;3.1271330791967e-18!GO:0000502;proteasome complex (sensu Eukaryota);3.22845045614162e-18!GO:0005761;mitochondrial ribosome;4.43019792784809e-18!GO:0000313;organellar ribosome;4.43019792784809e-18!GO:0030163;protein catabolic process;9.20836049506924e-18!GO:0008135;translation factor activity, nucleic acid binding;1.27738039949968e-17!GO:0005524;ATP binding;2.06527687697419e-17!GO:0006605;protein targeting;2.09826155551558e-17!GO:0008134;transcription factor binding;2.10286894423461e-17!GO:0009057;macromolecule catabolic process;2.83831926221525e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.7461809030848e-17!GO:0032559;adenyl ribonucleotide binding;6.837055264592e-17!GO:0005635;nuclear envelope;7.31745991735585e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.08553598329907e-16!GO:0030554;adenyl nucleotide binding;1.52977679443904e-16!GO:0044453;nuclear membrane part;3.31718819640027e-16!GO:0051082;unfolded protein binding;3.37081634557448e-16!GO:0009719;response to endogenous stimulus;4.24776891648416e-16!GO:0031965;nuclear membrane;4.38006635454426e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.3988153909235e-16!GO:0003954;NADH dehydrogenase activity;4.3988153909235e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.3988153909235e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;5.93027553604338e-16!GO:0000375;RNA splicing, via transesterification reactions;5.93027553604338e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.93027553604338e-16!GO:0048770;pigment granule;7.71792539746273e-16!GO:0042470;melanosome;7.71792539746273e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;8.18845199245362e-16!GO:0006323;DNA packaging;3.63418149331133e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.36786122337135e-15!GO:0006399;tRNA metabolic process;1.47607568757862e-14!GO:0006913;nucleocytoplasmic transport;1.77864727786829e-14!GO:0044248;cellular catabolic process;2.06117606663885e-14!GO:0016604;nuclear body;2.40268679902968e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.58598727771699e-14!GO:0042773;ATP synthesis coupled electron transport;2.58598727771699e-14!GO:0051169;nuclear transport;4.37626471922067e-14!GO:0043412;biopolymer modification;4.65394300399818e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.15977017899918e-14!GO:0045271;respiratory chain complex I;6.15977017899918e-14!GO:0005747;mitochondrial respiratory chain complex I;6.15977017899918e-14!GO:0051186;cofactor metabolic process;6.54857112764206e-14!GO:0005643;nuclear pore;8.02649988514429e-14!GO:0051726;regulation of cell cycle;1.525006326641e-13!GO:0048193;Golgi vesicle transport;1.73366825059086e-13!GO:0000074;regulation of progression through cell cycle;1.9322617101145e-13!GO:0016887;ATPase activity;1.94651913362045e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.03691109509044e-13!GO:0012501;programmed cell death;2.27337636359508e-13!GO:0005783;endoplasmic reticulum;2.93003138427627e-13!GO:0006915;apoptosis;3.74506822283859e-13!GO:0003743;translation initiation factor activity;4.60632355361192e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.67702398846016e-13!GO:0004386;helicase activity;4.89826303385223e-13!GO:0000785;chromatin;5.61938564524758e-13!GO:0065004;protein-DNA complex assembly;6.5034451988494e-13!GO:0006333;chromatin assembly or disassembly;7.47837719747496e-13!GO:0042623;ATPase activity, coupled;9.89552657363779e-13!GO:0006413;translational initiation;1.11879736922183e-12!GO:0006446;regulation of translational initiation;3.14593451542262e-12!GO:0044432;endoplasmic reticulum part;4.42737703016771e-12!GO:0006464;protein modification process;4.49725550935812e-12!GO:0008219;cell death;6.45768442692346e-12!GO:0016265;death;6.45768442692346e-12!GO:0006364;rRNA processing;6.57830761906042e-12!GO:0003712;transcription cofactor activity;1.17686691156277e-11!GO:0016072;rRNA metabolic process;2.01077151053483e-11!GO:0017038;protein import;2.04336139909438e-11!GO:0006366;transcription from RNA polymerase II promoter;2.18334958663465e-11!GO:0006403;RNA localization;2.50398177027614e-11!GO:0050794;regulation of cellular process;2.9461593480913e-11!GO:0065002;intracellular protein transport across a membrane;3.07395673093846e-11!GO:0050657;nucleic acid transport;3.18537404741369e-11!GO:0051236;establishment of RNA localization;3.18537404741369e-11!GO:0050658;RNA transport;3.18537404741369e-11!GO:0005794;Golgi apparatus;3.28434635019147e-11!GO:0046930;pore complex;4.02391302704904e-11!GO:0006261;DNA-dependent DNA replication;4.36308293864235e-11!GO:0008639;small protein conjugating enzyme activity;4.62781737636541e-11!GO:0008026;ATP-dependent helicase activity;5.57142454525912e-11!GO:0043687;post-translational protein modification;7.1400982777988e-11!GO:0016192;vesicle-mediated transport;7.93806880711618e-11!GO:0015630;microtubule cytoskeleton;8.7177802506267e-11!GO:0006732;coenzyme metabolic process;8.92650026585781e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.92650026585781e-11!GO:0004812;aminoacyl-tRNA ligase activity;8.92650026585781e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.92650026585781e-11!GO:0016607;nuclear speck;8.95931277225823e-11!GO:0043566;structure-specific DNA binding;9.05764688553188e-11!GO:0004842;ubiquitin-protein ligase activity;1.01013764407487e-10!GO:0019787;small conjugating protein ligase activity;1.02231320123522e-10!GO:0006334;nucleosome assembly;1.48082375107088e-10!GO:0000775;chromosome, pericentric region;1.58144861499154e-10!GO:0005793;ER-Golgi intermediate compartment;2.39147439511397e-10!GO:0043038;amino acid activation;2.4351110383599e-10!GO:0006418;tRNA aminoacylation for protein translation;2.4351110383599e-10!GO:0043039;tRNA aminoacylation;2.4351110383599e-10!GO:0009259;ribonucleotide metabolic process;3.1075473618943e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.78003485447238e-10!GO:0003697;single-stranded DNA binding;4.21639009859328e-10!GO:0006163;purine nucleotide metabolic process;4.80231025365936e-10!GO:0030532;small nuclear ribonucleoprotein complex;5.19667495597446e-10!GO:0016779;nucleotidyltransferase activity;6.27967297576942e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.50115820116332e-10!GO:0009055;electron carrier activity;6.6774095848227e-10!GO:0006461;protein complex assembly;8.30001055160767e-10!GO:0031497;chromatin assembly;1.08367528025333e-09!GO:0005667;transcription factor complex;1.33412306949997e-09!GO:0016881;acid-amino acid ligase activity;1.72762798021391e-09!GO:0006164;purine nucleotide biosynthetic process;2.05034996223129e-09!GO:0051028;mRNA transport;2.36717099910153e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.58693851499588e-09!GO:0009150;purine ribonucleotide metabolic process;3.7178216279505e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.89030396139105e-09!GO:0051188;cofactor biosynthetic process;4.82976649491006e-09!GO:0009260;ribonucleotide biosynthetic process;4.83804749157001e-09!GO:0048523;negative regulation of cellular process;5.89435401790947e-09!GO:0005819;spindle;6.29429653177108e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.1779882420889e-09!GO:0051246;regulation of protein metabolic process;1.02619424796512e-08!GO:0016568;chromatin modification;1.1980518123358e-08!GO:0009056;catabolic process;1.30161735232733e-08!GO:0005789;endoplasmic reticulum membrane;1.30378992115236e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.43092152394316e-08!GO:0015986;ATP synthesis coupled proton transport;1.46985878458647e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.46985878458647e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.57971826362556e-08!GO:0008565;protein transporter activity;1.65736501297008e-08!GO:0043067;regulation of programmed cell death;2.29078216180318e-08!GO:0042981;regulation of apoptosis;2.80770401377783e-08!GO:0019222;regulation of metabolic process;2.85124452531114e-08!GO:0000245;spliceosome assembly;3.71819185051591e-08!GO:0005657;replication fork;5.66566054847362e-08!GO:0003899;DNA-directed RNA polymerase activity;5.66566054847362e-08!GO:0007051;spindle organization and biogenesis;5.77437758795742e-08!GO:0051170;nuclear import;5.77437758795742e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.22137376014332e-08!GO:0006888;ER to Golgi vesicle-mediated transport;6.3021497161529e-08!GO:0005813;centrosome;7.21596379801569e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.54058533086671e-08!GO:0005839;proteasome core complex (sensu Eukaryota);8.95920760322949e-08!GO:0009199;ribonucleoside triphosphate metabolic process;9.07463248456947e-08!GO:0009141;nucleoside triphosphate metabolic process;1.04694277927193e-07!GO:0019829;cation-transporting ATPase activity;1.37257263116281e-07!GO:0051329;interphase of mitotic cell cycle;1.65290114856655e-07!GO:0046034;ATP metabolic process;1.84285873356865e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.85882581917636e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.85882581917636e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.85882581917636e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.85882581917636e-07!GO:0006606;protein import into nucleus;1.97395754115475e-07!GO:0050789;regulation of biological process;1.99204864015336e-07!GO:0005815;microtubule organizing center;2.21856389452696e-07!GO:0043069;negative regulation of programmed cell death;2.38680178482432e-07!GO:0048519;negative regulation of biological process;2.40551634944883e-07!GO:0006754;ATP biosynthetic process;2.65564461932449e-07!GO:0006753;nucleoside phosphate metabolic process;2.65564461932449e-07!GO:0016787;hydrolase activity;2.80159339608112e-07!GO:0000075;cell cycle checkpoint;2.96082551073393e-07!GO:0009108;coenzyme biosynthetic process;2.98832729626997e-07!GO:0031324;negative regulation of cellular metabolic process;3.22333756267933e-07!GO:0007005;mitochondrion organization and biogenesis;3.67898630916864e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.8913924530027e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.8913924530027e-07!GO:0032446;protein modification by small protein conjugation;4.06086359513294e-07!GO:0009060;aerobic respiration;4.3971160263865e-07!GO:0043623;cellular protein complex assembly;5.0187713082838e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.03637218235295e-07!GO:0043066;negative regulation of apoptosis;5.31111001916581e-07!GO:0045259;proton-transporting ATP synthase complex;6.72026008418326e-07!GO:0051325;interphase;6.72755796988455e-07!GO:0004298;threonine endopeptidase activity;6.93350395820502e-07!GO:0016567;protein ubiquitination;7.52484442865043e-07!GO:0003724;RNA helicase activity;7.6223575348088e-07!GO:0000151;ubiquitin ligase complex;8.44822240506778e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.52545012518318e-07!GO:0005762;mitochondrial large ribosomal subunit;8.54764229558869e-07!GO:0000315;organellar large ribosomal subunit;8.54764229558869e-07!GO:0005768;endosome;8.85333965758392e-07!GO:0009117;nucleotide metabolic process;9.24332673141431e-07!GO:0006916;anti-apoptosis;9.60752895990924e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.92484385049952e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.95545360717212e-07!GO:0016740;transferase activity;1.09541092462206e-06!GO:0016564;transcription repressor activity;1.17852168740088e-06!GO:0030120;vesicle coat;1.19947666426295e-06!GO:0030662;coated vesicle membrane;1.19947666426295e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.52455405342631e-06!GO:0007088;regulation of mitosis;2.28027546613439e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.34513156240836e-06!GO:0045333;cellular respiration;2.38133478205031e-06!GO:0003714;transcription corepressor activity;2.53786042042402e-06!GO:0003924;GTPase activity;3.00047334594641e-06!GO:0006099;tricarboxylic acid cycle;3.82144819898292e-06!GO:0046356;acetyl-CoA catabolic process;3.82144819898292e-06!GO:0008094;DNA-dependent ATPase activity;4.05891832893854e-06!GO:0003690;double-stranded DNA binding;4.6048515216075e-06!GO:0031323;regulation of cellular metabolic process;4.8043791383241e-06!GO:0000314;organellar small ribosomal subunit;5.37896538467831e-06!GO:0005763;mitochondrial small ribosomal subunit;5.37896538467831e-06!GO:0006793;phosphorus metabolic process;5.92080309415017e-06!GO:0006796;phosphate metabolic process;5.92080309415017e-06!GO:0006752;group transfer coenzyme metabolic process;6.15496906347889e-06!GO:0048475;coated membrane;6.73654786703653e-06!GO:0030117;membrane coat;6.73654786703653e-06!GO:0003713;transcription coactivator activity;7.06246737860081e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.34632783434158e-06!GO:0006350;transcription;9.40737149231163e-06!GO:0007059;chromosome segregation;9.43274263528579e-06!GO:0016563;transcription activator activity;9.5620965043604e-06!GO:0008033;tRNA processing;9.62670859731773e-06!GO:0006084;acetyl-CoA metabolic process;9.80652033466182e-06!GO:0051427;hormone receptor binding;9.9574956211277e-06!GO:0045786;negative regulation of progression through cell cycle;1.01433670502958e-05!GO:0044452;nucleolar part;1.07086330374916e-05!GO:0051052;regulation of DNA metabolic process;1.09701687809613e-05!GO:0000776;kinetochore;1.11177306118649e-05!GO:0006302;double-strand break repair;1.12787152659076e-05!GO:0000786;nucleosome;1.17039719513982e-05!GO:0044440;endosomal part;1.22939945576775e-05!GO:0010008;endosome membrane;1.22939945576775e-05!GO:0051168;nuclear export;1.2311898743311e-05!GO:0006613;cotranslational protein targeting to membrane;1.31849877746161e-05!GO:0009892;negative regulation of metabolic process;1.41152368090388e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.73367186815856e-05!GO:0003682;chromatin binding;1.88732837866975e-05!GO:0035257;nuclear hormone receptor binding;2.36402266394034e-05!GO:0005788;endoplasmic reticulum lumen;2.50925819978268e-05!GO:0044431;Golgi apparatus part;2.64380110496818e-05!GO:0006310;DNA recombination;3.02792915637745e-05!GO:0007010;cytoskeleton organization and biogenesis;3.37873723348428e-05!GO:0051187;cofactor catabolic process;3.43420245706715e-05!GO:0005769;early endosome;3.59617549800472e-05!GO:0005525;GTP binding;3.70729543079015e-05!GO:0043681;protein import into mitochondrion;4.28299260771483e-05!GO:0009109;coenzyme catabolic process;4.70240316858133e-05!GO:0005770;late endosome;4.72562416106095e-05!GO:0043021;ribonucleoprotein binding;4.80836751318783e-05!GO:0016481;negative regulation of transcription;4.95928571211413e-05!GO:0019899;enzyme binding;5.03382458638491e-05!GO:0008186;RNA-dependent ATPase activity;5.14854792621477e-05!GO:0003684;damaged DNA binding;5.72549767510833e-05!GO:0006414;translational elongation;5.92423292634719e-05!GO:0016310;phosphorylation;6.0361522240143e-05!GO:0030880;RNA polymerase complex;6.21488546118017e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.40467311513959e-05!GO:0019867;outer membrane;8.90736277317267e-05!GO:0000059;protein import into nucleus, docking;8.90736277317267e-05!GO:0030867;rough endoplasmic reticulum membrane;9.86626826578717e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;9.87342716616922e-05!GO:0031072;heat shock protein binding;0.000108476992502561!GO:0010468;regulation of gene expression;0.000108557553141393!GO:0005874;microtubule;0.000109176964098271!GO:0031968;organelle outer membrane;0.000112024028336113!GO:0016853;isomerase activity;0.000114877139106318!GO:0016363;nuclear matrix;0.000124708935191341!GO:0004527;exonuclease activity;0.000124708935191341!GO:0005048;signal sequence binding;0.00013237022842846!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000132465316622297!GO:0000082;G1/S transition of mitotic cell cycle;0.000137384656590803!GO:0003729;mRNA binding;0.000143995446811087!GO:0006950;response to stress;0.000147454804045593!GO:0004004;ATP-dependent RNA helicase activity;0.000150212757645778!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000153177673146251!GO:0000428;DNA-directed RNA polymerase complex;0.000153177673146251!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000153554540996565!GO:0007093;mitotic cell cycle checkpoint;0.000157292447190748!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000167606677111181!GO:0016859;cis-trans isomerase activity;0.00017517689257625!GO:0048522;positive regulation of cellular process;0.000214271310778299!GO:0005798;Golgi-associated vesicle;0.000224368424796475!GO:0006612;protein targeting to membrane;0.00023838109852027!GO:0033116;ER-Golgi intermediate compartment membrane;0.000243213280224876!GO:0007052;mitotic spindle organization and biogenesis;0.000249120002174324!GO:0031252;leading edge;0.00026210101163873!GO:0006626;protein targeting to mitochondrion;0.000269282958516603!GO:0007017;microtubule-based process;0.000270752970705241!GO:0008654;phospholipid biosynthetic process;0.000275614535378854!GO:0008250;oligosaccharyl transferase complex;0.000324317073032608!GO:0008168;methyltransferase activity;0.000343221929743423!GO:0003678;DNA helicase activity;0.000347867393104805!GO:0043596;nuclear replication fork;0.000353811676052461!GO:0032508;DNA duplex unwinding;0.000354919980718624!GO:0032392;DNA geometric change;0.000354919980718624!GO:0000139;Golgi membrane;0.000357888770230825!GO:0016741;transferase activity, transferring one-carbon groups;0.000361579852837609!GO:0006383;transcription from RNA polymerase III promoter;0.000364353676221844!GO:0045454;cell redox homeostasis;0.000378785942466867!GO:0006275;regulation of DNA replication;0.00038974171288551!GO:0032561;guanyl ribonucleotide binding;0.00039207484937192!GO:0019001;guanyl nucleotide binding;0.00039207484937192!GO:0005741;mitochondrial outer membrane;0.000416747860301049!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00043410845041035!GO:0004576;oligosaccharyl transferase activity;0.000450763385634482!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000453255614498777!GO:0006352;transcription initiation;0.000587752351876359!GO:0007006;mitochondrial membrane organization and biogenesis;0.000608798266651004!GO:0000049;tRNA binding;0.000673557551992202!GO:0046483;heterocycle metabolic process;0.000696757465727495!GO:0005684;U2-dependent spliceosome;0.000696757465727495!GO:0032774;RNA biosynthetic process;0.000715992645312163!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00072500362809733!GO:0004518;nuclease activity;0.000741582683998159!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000745004699276826!GO:0016044;membrane organization and biogenesis;0.000763332700574752!GO:0065007;biological regulation;0.000770421731379538!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000770421731379538!GO:0003677;DNA binding;0.000770421731379538!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000781795127080146!GO:0005885;Arp2/3 protein complex;0.000781795127080146!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000817158129117957!GO:0006268;DNA unwinding during replication;0.000877876706825522!GO:0008139;nuclear localization sequence binding;0.00089390877154949!GO:0005876;spindle microtubule;0.000914549939686753!GO:0051789;response to protein stimulus;0.000936183711218907!GO:0006986;response to unfolded protein;0.000936183711218907!GO:0009112;nucleobase metabolic process;0.000942975518739052!GO:0006351;transcription, DNA-dependent;0.000980083800935648!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102914329027418!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102914329027418!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102914329027418!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00106238846905033!GO:0030036;actin cytoskeleton organization and biogenesis;0.00106238846905033!GO:0009165;nucleotide biosynthetic process;0.00107126269370817!GO:0018196;peptidyl-asparagine modification;0.00110794538325897!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00110794538325897!GO:0048471;perinuclear region of cytoplasm;0.00113847767674403!GO:0006402;mRNA catabolic process;0.00118251361975479!GO:0006284;base-excision repair;0.00118635514631719!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00127985281483829!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00127985281483829!GO:0051252;regulation of RNA metabolic process;0.00128831752277779!GO:0015631;tubulin binding;0.00134069303429966!GO:0019843;rRNA binding;0.00140782898692581!GO:0016272;prefoldin complex;0.00140782898692581!GO:0031988;membrane-bound vesicle;0.00141880239785715!GO:0007243;protein kinase cascade;0.00149451459344137!GO:0009116;nucleoside metabolic process;0.00155812420388684!GO:0043601;nuclear replisome;0.00159919693413965!GO:0030894;replisome;0.00159919693413965!GO:0000228;nuclear chromosome;0.00159919693413965!GO:0006401;RNA catabolic process;0.00161642775304761!GO:0042802;identical protein binding;0.00169110042940854!GO:0006839;mitochondrial transport;0.00169771474867168!GO:0051540;metal cluster binding;0.00176304789409079!GO:0051536;iron-sulfur cluster binding;0.00176304789409079!GO:0048500;signal recognition particle;0.00181144582134501!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00188946909844873!GO:0016491;oxidoreductase activity;0.00204111642767981!GO:0051087;chaperone binding;0.0020903419396842!GO:0051920;peroxiredoxin activity;0.00209042043672571!GO:0046474;glycerophospholipid biosynthetic process;0.00209449657667452!GO:0030132;clathrin coat of coated pit;0.00209502812000313!GO:0016023;cytoplasmic membrane-bound vesicle;0.00209936264359736!GO:0051539;4 iron, 4 sulfur cluster binding;0.00211829991831149!GO:0003746;translation elongation factor activity;0.00213533616134841!GO:0000922;spindle pole;0.0023094181390289!GO:0006405;RNA export from nucleus;0.00235429085513451!GO:0006270;DNA replication initiation;0.00248126714504886!GO:0005637;nuclear inner membrane;0.00252544017919292!GO:0008022;protein C-terminus binding;0.00293934481327827!GO:0005773;vacuole;0.00307805646101285!GO:0006611;protein export from nucleus;0.00328963873032569!GO:0043284;biopolymer biosynthetic process;0.00342134413678978!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00349364424806806!GO:0015002;heme-copper terminal oxidase activity;0.00349364424806806!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00349364424806806!GO:0004129;cytochrome-c oxidase activity;0.00349364424806806!GO:0000819;sister chromatid segregation;0.00349364424806806!GO:0006417;regulation of translation;0.00355717900534861!GO:0006091;generation of precursor metabolites and energy;0.00355717900534861!GO:0008312;7S RNA binding;0.00359406321178747!GO:0045449;regulation of transcription;0.00365091963459291!GO:0046489;phosphoinositide biosynthetic process;0.0036649252515695!GO:0005905;coated pit;0.00373069739834526!GO:0008408;3'-5' exonuclease activity;0.00383298196579064!GO:0006818;hydrogen transport;0.00386838114732814!GO:0008180;signalosome;0.00388397470651563!GO:0043022;ribosome binding;0.00393453316664444!GO:0000792;heterochromatin;0.00395720116157798!GO:0032200;telomere organization and biogenesis;0.00397300168517859!GO:0000723;telomere maintenance;0.00397300168517859!GO:0015992;proton transport;0.00401983262249701!GO:0005791;rough endoplasmic reticulum;0.00412463275285407!GO:0003711;transcription elongation regulator activity;0.00412463275285407!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00413910521693538!GO:0000070;mitotic sister chromatid segregation;0.00419854325198318!GO:0006595;polyamine metabolic process;0.0042110417472034!GO:0007050;cell cycle arrest;0.00422475076118652!GO:0008361;regulation of cell size;0.00458868372141276!GO:0008632;apoptotic program;0.00459265672455638!GO:0048146;positive regulation of fibroblast proliferation;0.00469082750593643!GO:0048487;beta-tubulin binding;0.00469097998228538!GO:0048144;fibroblast proliferation;0.00469383299833406!GO:0048145;regulation of fibroblast proliferation;0.00469383299833406!GO:0000725;recombinational repair;0.00481717379726054!GO:0000724;double-strand break repair via homologous recombination;0.00481717379726054!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00497958462443978!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00499290383875936!GO:0045047;protein targeting to ER;0.00499290383875936!GO:0044454;nuclear chromosome part;0.00500290562413683!GO:0031982;vesicle;0.00503434457028048!GO:0016251;general RNA polymerase II transcription factor activity;0.00520033842643247!GO:0030029;actin filament-based process;0.00542373760619628!GO:0000781;chromosome, telomeric region;0.00550347691253598!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00555125058624264!GO:0035258;steroid hormone receptor binding;0.00557672841299218!GO:0004674;protein serine/threonine kinase activity;0.00593602561619015!GO:0006289;nucleotide-excision repair;0.00599988277372189!GO:0006520;amino acid metabolic process;0.00601360669623913!GO:0046966;thyroid hormone receptor binding;0.00601417222600442!GO:0031970;organelle envelope lumen;0.00607676947228276!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0062094405053355!GO:0030176;integral to endoplasmic reticulum membrane;0.00625339689545569!GO:0004532;exoribonuclease activity;0.00637427897268321!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00637427897268321!GO:0000339;RNA cap binding;0.00638851722616273!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00695611823029551!GO:0004003;ATP-dependent DNA helicase activity;0.00702057759897007!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00713801356905162!GO:0015399;primary active transmembrane transporter activity;0.00713801356905162!GO:0030134;ER to Golgi transport vesicle;0.00720521799226565!GO:0006891;intra-Golgi vesicle-mediated transport;0.00723638185542188!GO:0001726;ruffle;0.00725303018243848!GO:0031570;DNA integrity checkpoint;0.00729302494569965!GO:0030658;transport vesicle membrane;0.00741705812577505!GO:0005669;transcription factor TFIID complex;0.00768431743678022!GO:0001558;regulation of cell growth;0.00770268134823951!GO:0065009;regulation of a molecular function;0.00775757995541509!GO:0016584;nucleosome positioning;0.00787581570665482!GO:0031901;early endosome membrane;0.0079568199841413!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0079568199841413!GO:0006376;mRNA splice site selection;0.00798252563325001!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00798252563325001!GO:0031124;mRNA 3'-end processing;0.00808750132757206!GO:0016049;cell growth;0.00815941355946905!GO:0005758;mitochondrial intermembrane space;0.00815941355946905!GO:0005832;chaperonin-containing T-complex;0.00827453968072161!GO:0000323;lytic vacuole;0.00828232055945249!GO:0005764;lysosome;0.00828232055945249!GO:0015980;energy derivation by oxidation of organic compounds;0.00834415871570342!GO:0030663;COPI coated vesicle membrane;0.00843757993835184!GO:0030126;COPI vesicle coat;0.00843757993835184!GO:0046822;regulation of nucleocytoplasmic transport;0.00845235919010525!GO:0031902;late endosome membrane;0.00878282247226752!GO:0031410;cytoplasmic vesicle;0.00888656854204112!GO:0042770;DNA damage response, signal transduction;0.00909594769750244!GO:0032984;macromolecular complex disassembly;0.00909594769750244!GO:0019783;small conjugating protein-specific protease activity;0.00911325800093141!GO:0000152;nuclear ubiquitin ligase complex;0.00924234607789875!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0093248253697387!GO:0043488;regulation of mRNA stability;0.0093681213916904!GO:0043487;regulation of RNA stability;0.0093681213916904!GO:0000178;exosome (RNase complex);0.00943579271828401!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00970958257900433!GO:0031577;spindle checkpoint;0.00979187174177259!GO:0045045;secretory pathway;0.00981937181038316!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00985454083952596!GO:0030127;COPII vesicle coat;0.00995219627745152!GO:0012507;ER to Golgi transport vesicle membrane;0.00995219627745152!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00995219627745152!GO:0042393;histone binding;0.0102499344932982!GO:0009451;RNA modification;0.0102997564624989!GO:0043241;protein complex disassembly;0.0103175578320436!GO:0008234;cysteine-type peptidase activity;0.0103183816606013!GO:0032259;methylation;0.0103470620744778!GO:0045941;positive regulation of transcription;0.0103955124858065!GO:0006144;purine base metabolic process;0.0105555479478354!GO:0045893;positive regulation of transcription, DNA-dependent;0.0105669435600322!GO:0046467;membrane lipid biosynthetic process;0.0106563947200972!GO:0051059;NF-kappaB binding;0.0108410557461847!GO:0003702;RNA polymerase II transcription factor activity;0.0108575342872546!GO:0043433;negative regulation of transcription factor activity;0.0109353590340887!GO:0004843;ubiquitin-specific protease activity;0.0110474808730227!GO:0006497;protein amino acid lipidation;0.0110587612462295!GO:0005869;dynactin complex;0.0112484550913718!GO:0022415;viral reproductive process;0.0113888693117854!GO:0045892;negative regulation of transcription, DNA-dependent;0.0115097324407996!GO:0030118;clathrin coat;0.0119906658290322!GO:0006378;mRNA polyadenylation;0.0119906658290322!GO:0030137;COPI-coated vesicle;0.0120903933056822!GO:0048468;cell development;0.0121557371729705!GO:0006338;chromatin remodeling;0.0125155007542153!GO:0000096;sulfur amino acid metabolic process;0.0135887833897184!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0137258328750635!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0137258328750635!GO:0030660;Golgi-associated vesicle membrane;0.0139599266345398!GO:0022890;inorganic cation transmembrane transporter activity;0.0142758870971338!GO:0043624;cellular protein complex disassembly;0.014297435893044!GO:0000910;cytokinesis;0.0147536704170416!GO:0051101;regulation of DNA binding;0.0147738797289232!GO:0006984;ER-nuclear signaling pathway;0.0147801722177986!GO:0006892;post-Golgi vesicle-mediated transport;0.0149890278031176!GO:0031326;regulation of cellular biosynthetic process;0.0153988498850581!GO:0031625;ubiquitin protein ligase binding;0.0155515825804387!GO:0031529;ruffle organization and biogenesis;0.0160410734958549!GO:0043414;biopolymer methylation;0.0160582069821716!GO:0009967;positive regulation of signal transduction;0.0162570254236335!GO:0000118;histone deacetylase complex;0.0162995348283188!GO:0005732;small nucleolar ribonucleoprotein complex;0.0164048617395135!GO:0016790;thiolester hydrolase activity;0.0164301203990143!GO:0007004;telomere maintenance via telomerase;0.0166768737931716!GO:0031371;ubiquitin conjugating enzyme complex;0.0166823872001439!GO:0008538;proteasome activator activity;0.016770902335536!GO:0030521;androgen receptor signaling pathway;0.017036986154006!GO:0046112;nucleobase biosynthetic process;0.017211875063253!GO:0006213;pyrimidine nucleoside metabolic process;0.0172906731439218!GO:0006778;porphyrin metabolic process;0.0175021100422172!GO:0033013;tetrapyrrole metabolic process;0.0175021100422172!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0175610048797692!GO:0045039;protein import into mitochondrial inner membrane;0.0175610048797692!GO:0051053;negative regulation of DNA metabolic process;0.018138526306195!GO:0004523;ribonuclease H activity;0.0183199169944022!GO:0022411;cellular component disassembly;0.0183813316249685!GO:0030133;transport vesicle;0.0183813316249685!GO:0031123;RNA 3'-end processing;0.01840634610768!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0185400676549596!GO:0048518;positive regulation of biological process;0.0185522461162972!GO:0007346;regulation of progression through mitotic cell cycle;0.0185891687576221!GO:0051348;negative regulation of transferase activity;0.0192939169384764!GO:0051098;regulation of binding;0.0200265307052148!GO:0033673;negative regulation of kinase activity;0.020163406161783!GO:0006469;negative regulation of protein kinase activity;0.020163406161783!GO:0004221;ubiquitin thiolesterase activity;0.0203905110824176!GO:0008017;microtubule binding;0.0204260169007021!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0205332073664109!GO:0006506;GPI anchor biosynthetic process;0.0206999917633529!GO:0007021;tubulin folding;0.0214224674706213!GO:0030125;clathrin vesicle coat;0.0214464842246507!GO:0030665;clathrin coated vesicle membrane;0.0214464842246507!GO:0006607;NLS-bearing substrate import into nucleus;0.021456222216556!GO:0043189;H4/H2A histone acetyltransferase complex;0.0216776701753221!GO:0003887;DNA-directed DNA polymerase activity;0.0226025236774109!GO:0009889;regulation of biosynthetic process;0.0228069802755094!GO:0006509;membrane protein ectodomain proteolysis;0.0241999538438489!GO:0033619;membrane protein proteolysis;0.0241999538438489!GO:0008047;enzyme activator activity;0.0242891115689393!GO:0040029;regulation of gene expression, epigenetic;0.0248803722149026!GO:0043065;positive regulation of apoptosis;0.0251034201189575!GO:0006360;transcription from RNA polymerase I promoter;0.0253073333677211!GO:0006400;tRNA modification;0.0255807265024845!GO:0006650;glycerophospholipid metabolic process;0.0259218036927232!GO:0005680;anaphase-promoting complex;0.0259482928723978!GO:0005875;microtubule associated complex;0.0260098546179362!GO:0006505;GPI anchor metabolic process;0.0260928436968037!GO:0006278;RNA-dependent DNA replication;0.0265425061579065!GO:0000077;DNA damage checkpoint;0.0267445630078428!GO:0045792;negative regulation of cell size;0.0267445630078428!GO:0006355;regulation of transcription, DNA-dependent;0.0268023578619204!GO:0043130;ubiquitin binding;0.0268084600513128!GO:0032182;small conjugating protein binding;0.0268084600513128!GO:0016197;endosome transport;0.0269198085838299!GO:0004721;phosphoprotein phosphatase activity;0.0275630954978025!GO:0000175;3'-5'-exoribonuclease activity;0.0277936082682656!GO:0042158;lipoprotein biosynthetic process;0.0278371850138648!GO:0009066;aspartate family amino acid metabolic process;0.0278562959393577!GO:0043068;positive regulation of programmed cell death;0.0279965364294168!GO:0008243;plasminogen activator activity;0.0280305756764792!GO:0030308;negative regulation of cell growth;0.0280364974041512!GO:0005652;nuclear lamina;0.0280703042911486!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0281000262201614!GO:0030911;TPR domain binding;0.0281400330419885!GO:0006779;porphyrin biosynthetic process;0.0282241249031101!GO:0033014;tetrapyrrole biosynthetic process;0.0282241249031101!GO:0043492;ATPase activity, coupled to movement of substances;0.0287247993866702!GO:0005663;DNA replication factor C complex;0.0292340196746439!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0296887090432562!GO:0006740;NADPH regeneration;0.0296887090432562!GO:0006098;pentose-phosphate shunt;0.0296887090432562!GO:0030508;thiol-disulfide exchange intermediate activity;0.0298836698984292!GO:0008276;protein methyltransferase activity;0.0301894262940851!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0302940702432848!GO:0009124;nucleoside monophosphate biosynthetic process;0.0304111061890575!GO:0009123;nucleoside monophosphate metabolic process;0.0304111061890575!GO:0005774;vacuolar membrane;0.0304678177919104!GO:0016791;phosphoric monoester hydrolase activity;0.0312811948917697!GO:0006897;endocytosis;0.0313727915648941!GO:0010324;membrane invagination;0.0313727915648941!GO:0030119;AP-type membrane coat adaptor complex;0.031519934644195!GO:0000726;non-recombinational repair;0.0319645945772718!GO:0046982;protein heterodimerization activity;0.0321579011391075!GO:0008536;Ran GTPase binding;0.0322851289486094!GO:0009303;rRNA transcription;0.032294605392521!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0326748431621858!GO:0046519;sphingoid metabolic process;0.0328597673246738!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.033142936723816!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0337428915562429!GO:0030032;lamellipodium biogenesis;0.0337428915562429!GO:0046983;protein dimerization activity;0.0338164120121891!GO:0042168;heme metabolic process;0.0339108086267549!GO:0050662;coenzyme binding;0.0341367702462009!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0346005189582091!GO:0005784;translocon complex;0.0346566116661169!GO:0017134;fibroblast growth factor binding;0.0346566116661169!GO:0030041;actin filament polymerization;0.0347781152656021!GO:0035267;NuA4 histone acetyltransferase complex;0.0354827526075653!GO:0019206;nucleoside kinase activity;0.0354987720222291!GO:0016311;dephosphorylation;0.035711486261199!GO:0006007;glucose catabolic process;0.0358479025671603!GO:0050178;phenylpyruvate tautomerase activity;0.0361748815811377!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0366119005136544!GO:0008637;apoptotic mitochondrial changes;0.0381012972157831!GO:0051338;regulation of transferase activity;0.0384367750784177!GO:0030833;regulation of actin filament polymerization;0.0386611361404571!GO:0006301;postreplication repair;0.0390052224905743!GO:0030384;phosphoinositide metabolic process;0.0391473373203309!GO:0006672;ceramide metabolic process;0.0393162448414694!GO:0000123;histone acetyltransferase complex;0.0393487412204343!GO:0051297;centrosome organization and biogenesis;0.0394444635554751!GO:0031023;microtubule organizing center organization and biogenesis;0.0394444635554751!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0396505508839911!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0406195867951755!GO:0010257;NADH dehydrogenase complex assembly;0.0406195867951755!GO:0033108;mitochondrial respiratory chain complex assembly;0.0406195867951755!GO:0004860;protein kinase inhibitor activity;0.041270851118003!GO:0050681;androgen receptor binding;0.0413417135221682!GO:0030659;cytoplasmic vesicle membrane;0.0415870791531937!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.042031033498512!GO:0030027;lamellipodium;0.0438097515890249!GO:0044450;microtubule organizing center part;0.0438323168708851!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0440159948292684!GO:0022408;negative regulation of cell-cell adhesion;0.0441116157194973!GO:0008156;negative regulation of DNA replication;0.0445920197506827!GO:0008629;induction of apoptosis by intracellular signals;0.0451721122716008!GO:0000209;protein polyubiquitination;0.0460711150634806!GO:0007162;negative regulation of cell adhesion;0.0464976934721965!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0473388632918021!GO:0009119;ribonucleoside metabolic process;0.0477277299804795!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0478441727588573!GO:0000790;nuclear chromatin;0.0478662901553617!GO:0004177;aminopeptidase activity;0.0486154337278717!GO:0042026;protein refolding;0.0488054733727811!GO:0003725;double-stranded RNA binding;0.0490868261235512!GO:0006730;one-carbon compound metabolic process;0.0493623785577989!GO:0006541;glutamine metabolic process;0.0496505807532426!GO:0003923;GPI-anchor transamidase activity;0.0496505807532426!GO:0016255;attachment of GPI anchor to protein;0.0496505807532426!GO:0042765;GPI-anchor transamidase complex;0.0496505807532426!GO:0006596;polyamine biosynthetic process;0.0498055205644267!GO:0005092;GDP-dissociation inhibitor activity;0.0498471091046593
|sample_id=10711
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=lung
|top_motifs=ELK1,4_GABP{A,B1}:1.84929527854;GFI1:1.62632958406;CDC5L:1.394150428;TFDP1:1.35914835029;EN1,2:1.3470704703;E2F1..5:1.26451455119;ZBTB16:1.13447226852;POU2F1..3:1.09847186706;ZNF143:1.04130780847;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.03565854695;NFY{A,B,C}:0.956241101566;PITX1..3:0.944205109591;FOXQ1:0.861965253922;FOXD3:0.855981710568;ONECUT1,2:0.84698713163;NKX6-1,2:0.811866286981;PAX3,7:0.801987186499;YY1:0.777887168795;FOX{I1,J2}:0.734407955862;MYB:0.704530156897;ELF1,2,4:0.686105651119;PAX4:0.642027297322;bHLH_family:0.624189754708;HES1:0.598715413486;ALX4:0.592883970472;HOX{A4,D4}:0.585892257539;PAX8:0.569671942623;ALX1:0.565701168717;POU1F1:0.564507764878;BACH2:0.510777875537;NKX3-1:0.480659136914;CDX1,2,4:0.472856006474;HOX{A5,B5}:0.402847894267;NKX2-1,4:0.397378667467;PPARG:0.3704241743;PBX1:0.362525448855;ADNP_IRX_SIX_ZHX:0.358880916696;PRRX1,2:0.337578324585;FOXP1:0.322762385585;GZF1:0.319978166084;HBP1_HMGB_SSRP1_UBTF:0.319304129987;VSX1,2:0.314797596008;NKX2-2,8:0.297892498928;HSF1,2:0.276407171959;BREu{core}:0.253510943829;PAX1,9:0.249437881267;NRF1:0.241269395067;FOS_FOS{B,L1}_JUN{B,D}:0.241249293077;CUX2:0.220427052469;GTF2A1,2:0.209008140846;NFE2L2:0.204829043463;AHR_ARNT_ARNT2:0.19961772788;EVI1:0.188773825075;NFE2:0.180491866362;IKZF2:0.17439155363;MYOD1:0.155719002918;NFIX:0.148264900852;FOXL1:0.145974720071;RXR{A,B,G}:0.1344755544;FOSL2:0.130752167066;KLF4:0.127967285328;TLX1..3_NFIC{dimer}:0.118929055953;FOXM1:0.115667708115;NKX2-3_NKX2-5:0.0774157631055;NFKB1_REL_RELA:0.0772801677308;TOPORS:0.0482625867782;POU3F1..4:0.0338224990193;DMAP1_NCOR{1,2}_SMARC:0.0210962884392;ZIC1..3:0.00814124927486;MYBL2:-0.0102664506826;NR6A1:-0.0254658842298;SOX{8,9,10}:-0.0305036108882;UFEwm:-0.0319148196764;SOX17:-0.0407512020173;TBP:-0.0436955331167;HIC1:-0.0603745627998;OCT4_SOX2{dimer}:-0.068121551749;MZF1:-0.0744804802947;STAT1,3:-0.0968029699843;ARID5B:-0.111003474784;POU5F1:-0.118703412875;ATF5_CREB3:-0.123846617824;HLF:-0.127411895225;ZNF384:-0.128094686764;SPI1:-0.13148179818;PRDM1:-0.135713593463;ZNF423:-0.135715652525;MED-1{core}:-0.144388182629;RFX1:-0.15222309782;SPIB:-0.162499294413;RUNX1..3:-0.16649116786;PAX2:-0.173191021436;ETS1,2:-0.174949365314;TEAD1:-0.175210711848;CRX:-0.195424220134;HOXA9_MEIS1:-0.198656903452;AIRE:-0.205732257336;IRF1,2:-0.218069875237;NR3C1:-0.226357765995;GATA4:-0.227879793724;HNF1A:-0.24202989705;RBPJ:-0.246808017365;ZFP161:-0.259640900991;TEF:-0.260811501459;PAX5:-0.261466187062;XCPE1{core}:-0.274472426293;POU6F1:-0.282050785283;NR5A1,2:-0.282965619693;CEBPA,B_DDIT3:-0.297902015471;HNF4A_NR2F1,2:-0.305850928895;DBP:-0.311532057593;CREB1:-0.340227047117;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.352046532116;MEF2{A,B,C,D}:-0.366919671442;PAX6:-0.370605010123;STAT2,4,6:-0.375130469433;HAND1,2:-0.392666291399;NR1H4:-0.401839910723;IKZF1:-0.410941958835;TFAP2{A,C}:-0.413977206972;FOXP3:-0.414110425816;HOX{A6,A7,B6,B7}:-0.430721903589;GATA6:-0.432364975554;TFAP2B:-0.4349914494;MTE{core}:-0.457800363759;ZBTB6:-0.464683161544;HIF1A:-0.469624348695;BPTF:-0.48113975004;IRF7:-0.481154857156;MTF1:-0.482869713147;HMGA1,2:-0.486339453682;REST:-0.494362349979;GTF2I:-0.495876355896;NKX3-2:-0.496989415162;T:-0.5089770179;JUN:-0.521277800152;LEF1_TCF7_TCF7L1,2:-0.541106849801;ATF4:-0.561124885194;XBP1:-0.562896693039;GFI1B:-0.567073801512;FOXN1:-0.568187052463;SOX5:-0.570585636346;TP53:-0.573212238128;TAL1_TCF{3,4,12}:-0.573684381352;NANOG:-0.591813227078;STAT5{A,B}:-0.592403208426;PATZ1:-0.601447279192;ZEB1:-0.626372286514;ZNF238:-0.628457444353;NHLH1,2:-0.629694160347;SREBF1,2:-0.633072474677;RFX2..5_RFXANK_RFXAP:-0.652215643976;SOX2:-0.659632378797;TLX2:-0.664674756116;RORA:-0.665148803697;TBX4,5:-0.668884017774;SNAI1..3:-0.669679611567;EGR1..3:-0.669690221419;NFIL3:-0.670424547628;FOXA2:-0.672287707766;NANOG{mouse}:-0.679274985318;ZNF148:-0.681465532323;ATF2:-0.687786422624;LHX3,4:-0.690933577036;NFATC1..3:-0.707628885031;AR:-0.71350246006;FOX{D1,D2}:-0.714375218469;NFE2L1:-0.727744457965;TFCP2:-0.781197779028;TFAP4:-0.78823797688;GCM1,2:-0.797332157736;RXRA_VDR{dimer}:-0.803484411226;RREB1:-0.827000453898;PDX1:-0.840757288871;MAZ:-0.860545602735;LMO2:-0.864852169327;SRF:-0.868495866922;ESRRA:-0.883298411265;SPZ1:-0.920946111904;SMAD1..7,9:-0.921058252319;MYFfamily:-0.928083532428;EBF1:-0.967918180924;FOXO1,3,4:-1.00232618768;TGIF1:-1.0577634021;ATF6:-1.06264557037;FOX{F1,F2,J1}:-1.07509872269;SP1:-1.09443341354;EP300:-1.26684598626;GLI1..3:-1.53946975074;MAFB:-1.60105587542;ESR1:-1.63341414791;HMX1:-1.76151997828
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10711-109H9;search_select_hide=table117:FF:10711-109H9
}}
}}

Latest revision as of 15:01, 3 June 2020

Name:fibrous histiocytoma cell line:GCT TIB-223
Species:Human (Homo sapiens)
Library ID:CNhs11842
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
age29
cell typeunclassifiable
cell lineGCT TIB-223
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005056
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11842 CAGE DRX007887 DRR008759
Accession ID Hg19

Library idBAMCTSS
CNhs11842 DRZ000184 DRZ001569
Accession ID Hg38

Library idBAMCTSS
CNhs11842 DRZ011534 DRZ012919
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.362
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.566
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.073
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0732
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0662
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.546
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.602
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0787
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.641
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.179
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11842

Jaspar motifP-value
MA0002.20.152
MA0003.10.122
MA0004.10.0518
MA0006.10.644
MA0007.10.369
MA0009.10.63
MA0014.10.61
MA0017.10.382
MA0018.20.237
MA0019.10.878
MA0024.12.10951e-6
MA0025.10.169
MA0027.10.914
MA0028.12.59524e-15
MA0029.10.86
MA0030.10.0905
MA0031.10.119
MA0035.20.285
MA0038.14.39357e-5
MA0039.20.119
MA0040.10.0969
MA0041.10.282
MA0042.10.468
MA0043.10.0971
MA0046.10.0568
MA0047.20.322
MA0048.10.00102
MA0050.10.449
MA0051.10.188
MA0052.10.132
MA0055.10.00142
MA0057.10.997
MA0058.10.0287
MA0059.10.0154
MA0060.14.22856e-13
MA0061.10.983
MA0062.24.96817e-17
MA0065.20.867
MA0066.10.674
MA0067.10.926
MA0068.10.765
MA0069.10.892
MA0070.10.737
MA0071.10.911
MA0072.10.564
MA0073.10.916
MA0074.10.635
MA0076.11.22373e-18
MA0077.10.947
MA0078.10.259
MA0079.20.0193
MA0080.20.174
MA0081.10.302
MA0083.10.00624
MA0084.10.723
MA0087.10.256
MA0088.11.34694e-6
MA0090.10.723
MA0091.10.0142
MA0092.10.453
MA0093.10.0275
MA0099.26.95335e-12
MA0100.10.0649
MA0101.10.0994
MA0102.20.251
MA0103.10.0268
MA0104.20.00233
MA0105.10.318
MA0106.10.679
MA0107.10.351
MA0108.20.749
MA0111.10.98
MA0112.20.0766
MA0113.10.105
MA0114.10.904
MA0115.10.421
MA0116.10.793
MA0117.10.436
MA0119.10.6
MA0122.10.337
MA0124.10.799
MA0125.10.775
MA0131.10.277
MA0135.10.034
MA0136.10.00281
MA0137.20.942
MA0138.20.21
MA0139.10.949
MA0140.10.915
MA0141.10.746
MA0142.10.476
MA0143.10.446
MA0144.10.573
MA0145.10.164
MA0146.10.0238
MA0147.10.00334
MA0148.10.314
MA0149.10.00509
MA0150.10.275
MA0152.10.287
MA0153.10.00729
MA0154.10.325
MA0155.10.2
MA0156.17.52554e-10
MA0157.10.803
MA0159.10.895
MA0160.10.414
MA0162.10.939
MA0163.10.129
MA0164.10.45
MA0258.10.0681
MA0259.10.0389



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11842

Novel motifP-value
10.211
100.117
1000.261
1010.429
1020.423
1030.684
1040.995
1050.354
1060.389
1070.785
1080.965
1090.831
110.675
1100.287
1110.13
1120.215
1130.209
1140.676
1150.397
1160.78
1170.178
1180.786
1190.416
120.838
1200.399
1210.89
1220.771
1230.931
1240.271
1250.304
1260.738
1270.316
1280.17
1290.991
130.106
1300.0676
1310.112
1320.15
1330.109
1340.098
1350.086
1360.0745
1370.673
1380.497
1390.036
140.322
1400.181
1410.974
1420.52
1430.63
1440.788
1450.585
1460.418
1470.684
1480.867
1490.0788
150.72
1500.219
1510.0938
1520.226
1530.178
1540.718
1550.289
1560.917
1570.269
1580.433
1590.143
160.357
1600.681
1610.408
1620.589
1630.992
1640.84
1650.614
1660.28
1670.722
1680.723
1690.0716
170.632
180.929
190.198
20.192
200.275
210.235
220.131
230.011
240.404
250.669
260.13
270.191
280.948
290.212
30.56
300.125
310.258
320.00511
330.508
340.182
350.649
360.205
370.716
380.812
390.32
40.302
400.617
410.264
420.283
430.662
440.918
450.281
460.578
470.372
480.268
490.652
50.129
500.824
510.329
520.0145
530.609
540.31
550.988
560.917
570.388
580.283
590.104
60.233
600.0717
610.533
620.289
630.924
640.755
650.205
669.64945e-6
670.223
680.605
690.138
70.892
700.343
710.675
720.313
730.981
740.31
750.107
760.268
770.507
780.827
790.218
80.419
800.129
810.791
820.0401
830.0402
840.813
850.0385
860.732
870.122
880.711
890.272
90.371
900.466
910.0225
920.162
930.816
940.726
950.423
960.602
970.616
980.673
990.621



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11842


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000054 (bone matrix secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0002092 (bone marrow cell)
0000137 (osteocyte)
0000092 (osteoclast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
0060072 (benign neoplasm)
0060085 (organ system benign neoplasm)
7 (disease of anatomical entity)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
3165 (skin benign neoplasm)
0060121 (integumentary system benign neoplasm)
200 (giant cell tumor)
2438 (dermis tumor)
4305 (bone giant cell tumor)
4418 (cutaneous fibrous histiocytoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000014 (zone of skin)
0002097 (skin of body)
0002199 (integument)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100583 (bone marrow cancer cell sample)
0100372 (bone cancer cell)
0100969 (osteoclastoma cell sample)
0103765 (dermatofibroma cell line)
0103766 (giant cell tumor cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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