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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004982
|DRA_sample_Accession=CAGE@SAMD00004982
|accession_numbers=CAGE;DRX007855;DRR008727;DRZ000152;DRZ001537
|accession_numbers=CAGE;DRX007855;DRR008727;DRZ000152;DRZ001537;DRZ011502;DRZ012887
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep1.CNhs12334.10824-111C5.hg38.nobarcode.ctss.bed.gz
|id=FF:10824-111C5
|id=FF:10824-111C5
|is_a=EFO:0002091;;FF:0000210;;FF:0100664
|is_a=EFO:0002091;;FF:0000210;;FF:0100664
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|library_id=CNhs12334
|library_id=CNhs12334
|library_id_phase_based=2:CNhs12334
|library_id_phase_based=2:CNhs12334
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10824
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10824
|name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1
|name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=GATA6:3.53652371598;MYB:1.91453892144;POU3F1..4:1.74755117282;ELK1,4_GABP{A,B1}:1.72376020444;CDX1,2,4:1.61974095594;NFY{A,B,C}:1.56042023151;E2F1..5:1.4613624517;STAT5{A,B}:1.44117801259;PBX1:1.4091373062;NRF1:1.25442316536;ZBTB16:1.18957979687;HOXA9_MEIS1:1.15130310269;POU2F1..3:1.14372193455;NR5A1,2:1.0262560085;STAT1,3:1.00035840005;ZNF143:0.918492872862;NR6A1:0.915796800515;HOX{A5,B5}:0.901471019923;FOXQ1:0.874705666783;HOX{A6,A7,B6,B7}:0.855276492784;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.846138406838;NFIX:0.836956871802;CRX:0.816736798038;PITX1..3:0.805969084698;PAX8:0.788546778225;ADNP_IRX_SIX_ZHX:0.786311170949;AHR_ARNT_ARNT2:0.716351500623;OCT4_SOX2{dimer}:0.707103880869;NANOG:0.669331052;YY1:0.617680934879;RBPJ:0.579791663222;ESRRA:0.541530273508;BREu{core}:0.497944589027;T:0.485893145073;NKX3-2:0.456607763512;CUX2:0.443546067981;HES1:0.414793747667;ZNF148:0.41384592722;FOXA2:0.41160909819;NFE2:0.388525085442;NR1H4:0.385966247776;SOX{8,9,10}:0.384563857161;AIRE:0.372728766528;NANOG{mouse}:0.367608422409;RORA:0.362137261442;NKX2-3_NKX2-5:0.351385642758;SPZ1:0.344179341813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.340118193078;GFI1:0.322626901166;AR:0.307809098904;PAX3,7:0.296561083044;PRRX1,2:0.293723737318;ALX1:0.2642898499;ELF1,2,4:0.2497139854;IKZF2:0.213600292967;SMAD1..7,9:0.179046378986;NKX2-1,4:0.167779797709;HAND1,2:0.165403829907;ONECUT1,2:0.152498540007;POU1F1:0.140013642674;IKZF1:0.134282705257;HSF1,2:0.132213264071;SNAI1..3:0.129680400804;ARID5B:0.118578008891;TEF:0.109692424927;EVI1:0.0869621937093;HOX{A4,D4}:0.0816463196069;HNF4A_NR2F1,2:0.0802512869104;TOPORS:0.0770596300312;LEF1_TCF7_TCF7L1,2:0.0732310493206;RXRA_VDR{dimer}:0.0705047382963;ZEB1:0.0132699284635;PAX6:0.0113276529421;bHLH_family:-0.0034353740966;PPARG:-0.0215664296553;ZNF384:-0.03978882248;VSX1,2:-0.0614903122551;NKX6-1,2:-0.0660615309187;FOX{F1,F2,J1}:-0.0769345728588;SPIB:-0.105306256265;FOXD3:-0.106544723405;EN1,2:-0.117498650651;POU6F1:-0.133630576047;POU5F1:-0.136271548282;TFDP1:-0.174612591934;MYOD1:-0.176784669786;CREB1:-0.190344383996;ATF5_CREB3:-0.193153360559;HIF1A:-0.198030564407;NFE2L2:-0.201054212393;FOSL2:-0.202713192239;HLF:-0.219334957506;HNF1A:-0.220464085939;NKX2-2,8:-0.245034315149;FOXP1:-0.245318219548;MEF2{A,B,C,D}:-0.255315644372;ATF4:-0.264841872441;PAX1,9:-0.274641912115;SPI1:-0.279628156928;PAX2:-0.314186554547;MAFB:-0.339616255434;RUNX1..3:-0.367677767482;SP1:-0.367976939418;CEBPA,B_DDIT3:-0.386004883892;BACH2:-0.387821993281;FOXN1:-0.392424869475;KLF4:-0.400445578736;NKX3-1:-0.405535948008;UFEwm:-0.405720379578;NFKB1_REL_RELA:-0.425646127706;RFX2..5_RFXANK_RFXAP:-0.42691972242;FOS_FOS{B,L1}_JUN{B,D}:-0.427966165565;TGIF1:-0.461661223574;ZFP161:-0.46625398179;LMO2:-0.472660428975;STAT2,4,6:-0.472968873674;RXR{A,B,G}:-0.477064623425;ETS1,2:-0.497119908965;RFX1:-0.497304497589;GATA4:-0.499727008144;PAX4:-0.5254973553;HBP1_HMGB_SSRP1_UBTF:-0.52907634838;SOX17:-0.55306495804;SOX5:-0.599823165534;REST:-0.606422246064;NFE2L1:-0.615308814858;ZBTB6:-0.637096372405;FOXP3:-0.644579721886;PDX1:-0.685507459405;ZNF238:-0.693993412417;DMAP1_NCOR{1,2}_SMARC:-0.705450540549;NFATC1..3:-0.705505651969;XBP1:-0.708478957196;FOXM1:-0.710244465432;ZIC1..3:-0.724887335483;FOX{I1,J2}:-0.731193697884;ATF2:-0.764470000169;LHX3,4:-0.766375113058;EP300:-0.767645521879;GTF2I:-0.774457308604;ALX4:-0.780244335511;TLX2:-0.782544378655;PATZ1:-0.78361439432;TP53:-0.784820861467;XCPE1{core}:-0.793935450872;RREB1:-0.806558187381;NFIL3:-0.816496928995;IRF7:-0.8201098061;SOX2:-0.820353220335;NHLH1,2:-0.838919133768;TBP:-0.876676666274;DBP:-0.888691669816;EGR1..3:-0.892953561855;SREBF1,2:-0.89426419778;CDC5L:-0.908700143685;GTF2A1,2:-0.931508775393;MZF1:-0.936737286754;JUN:-0.948468380312;TFAP4:-0.951965080433;MED-1{core}:-0.976922786441;TEAD1:-0.993901662705;MYBL2:-1.01467153037;NR3C1:-1.01840907584;FOX{D1,D2}:-1.06897499777;IRF1,2:-1.07555106019;GCM1,2:-1.09826223529;HMGA1,2:-1.11407798163;BPTF:-1.12292427363;SRF:-1.12435475988;MYFfamily:-1.14102252043;ESR1:-1.16566651518;HMX1:-1.19475239375;EBF1:-1.21679555089;ZNF423:-1.23323316816;HIC1:-1.26138132456;TLX1..3_NFIC{dimer}:-1.27587505892;ATF6:-1.30420371393;GLI1..3:-1.30458862737;MAZ:-1.31920053115;FOXO1,3,4:-1.34189782984;PRDM1:-1.34996943757;PAX5:-1.36593577834;TAL1_TCF{3,4,12}:-1.36821160858;MTF1:-1.39898631688;TBX4,5:-1.47215758332;MTE{core}:-1.48960064267;GFI1B:-1.53835839663;GZF1:-1.55389893194;TFAP2{A,C}:-1.64978376585;TFAP2B:-1.73834296513;FOXL1:-1.94267775347;TFCP2:-2.30759003768
|top_motifs=GATA6:3.53652371598;MYB:1.91453892144;POU3F1..4:1.74755117282;ELK1,4_GABP{A,B1}:1.72376020444;CDX1,2,4:1.61974095594;NFY{A,B,C}:1.56042023151;E2F1..5:1.4613624517;STAT5{A,B}:1.44117801259;PBX1:1.4091373062;NRF1:1.25442316536;ZBTB16:1.18957979687;HOXA9_MEIS1:1.15130310269;POU2F1..3:1.14372193455;NR5A1,2:1.0262560085;STAT1,3:1.00035840005;ZNF143:0.918492872862;NR6A1:0.915796800515;HOX{A5,B5}:0.901471019923;FOXQ1:0.874705666783;HOX{A6,A7,B6,B7}:0.855276492784;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.846138406838;NFIX:0.836956871802;CRX:0.816736798038;PITX1..3:0.805969084698;PAX8:0.788546778225;ADNP_IRX_SIX_ZHX:0.786311170949;AHR_ARNT_ARNT2:0.716351500623;OCT4_SOX2{dimer}:0.707103880869;NANOG:0.669331052;YY1:0.617680934879;RBPJ:0.579791663222;ESRRA:0.541530273508;BREu{core}:0.497944589027;T:0.485893145073;NKX3-2:0.456607763512;CUX2:0.443546067981;HES1:0.414793747667;ZNF148:0.41384592722;FOXA2:0.41160909819;NFE2:0.388525085442;NR1H4:0.385966247776;SOX{8,9,10}:0.384563857161;AIRE:0.372728766528;NANOG{mouse}:0.367608422409;RORA:0.362137261442;NKX2-3_NKX2-5:0.351385642758;SPZ1:0.344179341813;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.340118193078;GFI1:0.322626901166;AR:0.307809098904;PAX3,7:0.296561083044;PRRX1,2:0.293723737318;ALX1:0.2642898499;ELF1,2,4:0.2497139854;IKZF2:0.213600292967;SMAD1..7,9:0.179046378986;NKX2-1,4:0.167779797709;HAND1,2:0.165403829907;ONECUT1,2:0.152498540007;POU1F1:0.140013642674;IKZF1:0.134282705257;HSF1,2:0.132213264071;SNAI1..3:0.129680400804;ARID5B:0.118578008891;TEF:0.109692424927;EVI1:0.0869621937093;HOX{A4,D4}:0.0816463196069;HNF4A_NR2F1,2:0.0802512869104;TOPORS:0.0770596300312;LEF1_TCF7_TCF7L1,2:0.0732310493206;RXRA_VDR{dimer}:0.0705047382963;ZEB1:0.0132699284635;PAX6:0.0113276529421;bHLH_family:-0.0034353740966;PPARG:-0.0215664296553;ZNF384:-0.03978882248;VSX1,2:-0.0614903122551;NKX6-1,2:-0.0660615309187;FOX{F1,F2,J1}:-0.0769345728588;SPIB:-0.105306256265;FOXD3:-0.106544723405;EN1,2:-0.117498650651;POU6F1:-0.133630576047;POU5F1:-0.136271548282;TFDP1:-0.174612591934;MYOD1:-0.176784669786;CREB1:-0.190344383996;ATF5_CREB3:-0.193153360559;HIF1A:-0.198030564407;NFE2L2:-0.201054212393;FOSL2:-0.202713192239;HLF:-0.219334957506;HNF1A:-0.220464085939;NKX2-2,8:-0.245034315149;FOXP1:-0.245318219548;MEF2{A,B,C,D}:-0.255315644372;ATF4:-0.264841872441;PAX1,9:-0.274641912115;SPI1:-0.279628156928;PAX2:-0.314186554547;MAFB:-0.339616255434;RUNX1..3:-0.367677767482;SP1:-0.367976939418;CEBPA,B_DDIT3:-0.386004883892;BACH2:-0.387821993281;FOXN1:-0.392424869475;KLF4:-0.400445578736;NKX3-1:-0.405535948008;UFEwm:-0.405720379578;NFKB1_REL_RELA:-0.425646127706;RFX2..5_RFXANK_RFXAP:-0.42691972242;FOS_FOS{B,L1}_JUN{B,D}:-0.427966165565;TGIF1:-0.461661223574;ZFP161:-0.46625398179;LMO2:-0.472660428975;STAT2,4,6:-0.472968873674;RXR{A,B,G}:-0.477064623425;ETS1,2:-0.497119908965;RFX1:-0.497304497589;GATA4:-0.499727008144;PAX4:-0.5254973553;HBP1_HMGB_SSRP1_UBTF:-0.52907634838;SOX17:-0.55306495804;SOX5:-0.599823165534;REST:-0.606422246064;NFE2L1:-0.615308814858;ZBTB6:-0.637096372405;FOXP3:-0.644579721886;PDX1:-0.685507459405;ZNF238:-0.693993412417;DMAP1_NCOR{1,2}_SMARC:-0.705450540549;NFATC1..3:-0.705505651969;XBP1:-0.708478957196;FOXM1:-0.710244465432;ZIC1..3:-0.724887335483;FOX{I1,J2}:-0.731193697884;ATF2:-0.764470000169;LHX3,4:-0.766375113058;EP300:-0.767645521879;GTF2I:-0.774457308604;ALX4:-0.780244335511;TLX2:-0.782544378655;PATZ1:-0.78361439432;TP53:-0.784820861467;XCPE1{core}:-0.793935450872;RREB1:-0.806558187381;NFIL3:-0.816496928995;IRF7:-0.8201098061;SOX2:-0.820353220335;NHLH1,2:-0.838919133768;TBP:-0.876676666274;DBP:-0.888691669816;EGR1..3:-0.892953561855;SREBF1,2:-0.89426419778;CDC5L:-0.908700143685;GTF2A1,2:-0.931508775393;MZF1:-0.936737286754;JUN:-0.948468380312;TFAP4:-0.951965080433;MED-1{core}:-0.976922786441;TEAD1:-0.993901662705;MYBL2:-1.01467153037;NR3C1:-1.01840907584;FOX{D1,D2}:-1.06897499777;IRF1,2:-1.07555106019;GCM1,2:-1.09826223529;HMGA1,2:-1.11407798163;BPTF:-1.12292427363;SRF:-1.12435475988;MYFfamily:-1.14102252043;ESR1:-1.16566651518;HMX1:-1.19475239375;EBF1:-1.21679555089;ZNF423:-1.23323316816;HIC1:-1.26138132456;TLX1..3_NFIC{dimer}:-1.27587505892;ATF6:-1.30420371393;GLI1..3:-1.30458862737;MAZ:-1.31920053115;FOXO1,3,4:-1.34189782984;PRDM1:-1.34996943757;PAX5:-1.36593577834;TAL1_TCF{3,4,12}:-1.36821160858;MTF1:-1.39898631688;TBX4,5:-1.47215758332;MTE{core}:-1.48960064267;GFI1B:-1.53835839663;GZF1:-1.55389893194;TFAP2{A,C}:-1.64978376585;TFAP2B:-1.73834296513;FOXL1:-1.94267775347;TFCP2:-2.30759003768
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10824-111C5;search_select_hide=table117:FF:10824-111C5
}}
}}

Latest revision as of 15:07, 3 June 2020

Name:chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep1
Species:Human (Homo sapiens)
Library ID:CNhs12334
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
age53
cell typegranulocyte
cell lineK562
companyNA
collaborationCarrie Davis (Cold spring Harbor Laboratories)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004982
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12334 CAGE DRX007855 DRR008727
Accession ID Hg19

Library idBAMCTSS
CNhs12334 DRZ000152 DRZ001537
Accession ID Hg38

Library idBAMCTSS
CNhs12334 DRZ011502 DRZ012887
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0125
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
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C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0.931
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12334

Jaspar motifP-value
MA0002.20.444
MA0003.10.69
MA0004.10.219
MA0006.10.155
MA0007.10.324
MA0009.10.379
MA0014.10.144
MA0017.10.235
MA0018.20.64
MA0019.10.933
MA0024.11.4117e-6
MA0025.10.751
MA0027.10.403
MA0028.11.88772e-7
MA0029.10.00638
MA0030.10.268
MA0031.10.521
MA0035.21.05925e-21
MA0038.10.108
MA0039.20.0144
MA0040.10.0438
MA0041.10.329
MA0042.10.469
MA0043.10.423
MA0046.10.846
MA0047.20.658
MA0048.10.19
MA0050.15.64016e-6
MA0051.12.73622e-6
MA0052.10.0113
MA0055.12.35336e-4
MA0057.10.587
MA0058.10.0463
MA0059.10.00348
MA0060.15.39269e-19
MA0061.10.622
MA0062.27.63826e-10
MA0065.20.0331
MA0066.10.491
MA0067.10.83
MA0068.10.0121
MA0069.10.865
MA0070.10.24
MA0071.10.19
MA0072.10.217
MA0073.10.95
MA0074.10.139
MA0076.11.05948e-10
MA0077.10.363
MA0078.10.262
MA0079.20.436
MA0080.20.248
MA0081.10.0447
MA0083.10.113
MA0084.10.875
MA0087.10.107
MA0088.10.00108
MA0090.10.00236
MA0091.10.72
MA0092.10.549
MA0093.10.132
MA0099.20.277
MA0100.10.0054
MA0101.10.372
MA0102.20.00839
MA0103.10.322
MA0104.21.70365e-4
MA0105.10.058
MA0106.10.709
MA0107.10.0214
MA0108.20.00879
MA0111.10.339
MA0112.20.127
MA0113.10.633
MA0114.10.031
MA0115.10.111
MA0116.10.00838
MA0117.10.569
MA0119.10.626
MA0122.10.957
MA0124.10.924
MA0125.10.865
MA0131.10.512
MA0135.10.0571
MA0136.10.374
MA0137.20.253
MA0138.20.924
MA0139.10.0484
MA0140.12.19408e-36
MA0141.10.00107
MA0142.10.197
MA0143.10.152
MA0144.10.966
MA0145.10.91
MA0146.10.0716
MA0147.11.44259e-5
MA0148.10.323
MA0149.10.0163
MA0150.10.224
MA0152.10.439
MA0153.10.17
MA0154.10.286
MA0155.10.645
MA0156.10.00134
MA0157.10.352
MA0159.10.316
MA0160.10.0289
MA0162.10.663
MA0163.11.46982e-6
MA0164.10.676
MA0258.10.237
MA0259.10.0115



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12334

Novel motifP-value
10.0132
100.0637
1000.271
1010.403
1020.368
1030.897
1040.692
1050.915
1060.0432
1070.0318
1080.981
1090.0174
110.114
1100.168
1110.435
1120.788
1130.129
1140.0488
1150.405
1160.38
1170.013
1180.206
1190.821
120.817
1200.647
1210.886
1220.107
1230.667
1240.433
1250.456
1260.117
1270.204
1280.0953
1290.601
130.00121
1300.0466
1310.287
1320.182
1330.102
1340.942
1350.31
1360.0398
1370.32
1380.503
1390.361
140.505
1400.0181
1410.0191
1420.941
1430.706
1440.866
1450.989
1460.924
1470.904
1480.91
1490.206
150.485
1500.448
1510.365
1520.0733
1530.952
1540.366
1550.153
1560.447
1570.41
1580.888
1590.135
160.865
1600.583
1610.0417
1620.703
1630.337
1640.425
1650.793
1660.089
1670.233
1680.519
1690.601
170.628
180.804
190.947
20.226
200.0745
210.339
220.614
230.0405
240.112
250.334
260.113
270.404
280.635
290.0223
30.37
300.155
310.593
320.112
330.0513
340.36
350.248
360.0283
370.257
380.289
390.237
40.0546
400.123
410.925
420.253
430.504
440.57
450.496
460.379
470.0196
480.139
490.112
50.805
500.937
510.969
520.0495
530.922
540.761
550.0235
560.818
570.269
580.399
590.977
60.325
600.43
610.074
620.327
630.475
640.402
650.629
665.17975e-6
670.559
680.177
690.652
70.0418
700.364
710.0233
720.319
730.82
740.479
750.00736
760.572
770.555
786.79721e-4
790.142
80.393
800.126
810.503
820.984
830.139
840.697
850.23
860.808
870.0856
880.873
890.77
90.441
900.429
910.0631
920.695
930.835
940.955
950.0267
960.537
970.365
980.219
990.602



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12334


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100664 (K-562 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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