FF:10827-111C8: Difference between revisions

Latest revision as of 15:07, 3 June 2020

Name:	acute myeloid leukemia (FAB M0) cell line:KG-1
Species:	Human (Homo sapiens)
Library ID:	CNhs13053
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	59
cell type	myeloid progenitor cell
cell line	KG-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005614

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13053		CAGE		DRX007801		DRR008673

Accession ID Hg19

Library id		BAM		CTSS
CNhs13053		DRZ000098		DRZ001483

Accession ID Hg38

Library id		BAM		CTSS
CNhs13053		DRZ011448		DRZ012833

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.259
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.587
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0414
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.246
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.079
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0835
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0613
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0295
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0.0621
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.609
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.211
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	1.033
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.614
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.079
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.262
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13053

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.28285e-4
MA0003.1	MA0003.1	0.763
MA0004.1	MA0004.1	0.102
MA0006.1	MA0006.1	0.201
MA0007.1	MA0007.1	0.863
MA0009.1	MA0009.1	0.323
MA0014.1	MA0014.1	0.307
MA0017.1	MA0017.1	0.0613
MA0018.2	MA0018.2	0.00943
MA0019.1	MA0019.1	0.121
MA0024.1	MA0024.1	7.91362e-6
MA0025.1	MA0025.1	0.184
MA0027.1	MA0027.1	0.06
MA0028.1	MA0028.1	0.00147
MA0029.1	MA0029.1	0.628
MA0030.1	MA0030.1	0.00597
MA0031.1	MA0031.1	0.244
MA0035.2	MA0035.2	0.0504
MA0038.1	MA0038.1	0.0167
MA0039.2	MA0039.2	0.155
MA0040.1	MA0040.1	0.618
MA0041.1	MA0041.1	0.188
MA0042.1	MA0042.1	0.719
MA0043.1	MA0043.1	0.0424
MA0046.1	MA0046.1	0.483
MA0047.2	MA0047.2	0.463
MA0048.1	MA0048.1	0.122
MA0050.1	MA0050.1	0.392
MA0051.1	MA0051.1	0.596
MA0052.1	MA0052.1	8.52805e-5
MA0055.1	MA0055.1	0.0693
MA0057.1	MA0057.1	0.655
MA0058.1	MA0058.1	0.054
MA0059.1	MA0059.1	2.18127e-4
MA0060.1	MA0060.1	0.223
MA0061.1	MA0061.1	0.673
MA0062.2	MA0062.2	5.93532e-7
MA0065.2	MA0065.2	0.00733
MA0066.1	MA0066.1	0.306
MA0067.1	MA0067.1	0.457
MA0068.1	MA0068.1	0.0587
MA0069.1	MA0069.1	0.0484
MA0070.1	MA0070.1	0.666
MA0071.1	MA0071.1	0.0756
MA0072.1	MA0072.1	0.652
MA0073.1	MA0073.1	0.594
MA0074.1	MA0074.1	0.964
MA0076.1	MA0076.1	6.66663e-4
MA0077.1	MA0077.1	0.118
MA0078.1	MA0078.1	0.925
MA0079.2	MA0079.2	0.218
MA0080.2	MA0080.2	1.15821e-8
MA0081.1	MA0081.1	0.00546
MA0083.1	MA0083.1	1.18798e-4
MA0084.1	MA0084.1	0.974
MA0087.1	MA0087.1	0.214
MA0088.1	MA0088.1	6.40716e-4
MA0090.1	MA0090.1	1.32002e-4
MA0091.1	MA0091.1	0.497
MA0092.1	MA0092.1	0.666
MA0093.1	MA0093.1	0.0899
MA0099.2	MA0099.2	1.87524e-7
MA0100.1	MA0100.1	0.00308
MA0101.1	MA0101.1	0.31
MA0102.2	MA0102.2	0.486
MA0103.1	MA0103.1	0.178
MA0104.2	MA0104.2	1.65452e-4
MA0105.1	MA0105.1	0.00404
MA0106.1	MA0106.1	0.696
MA0107.1	MA0107.1	0.0713
MA0108.2	MA0108.2	1.86996e-17
MA0111.1	MA0111.1	0.403
MA0112.2	MA0112.2	0.0532
MA0113.1	MA0113.1	0.784
MA0114.1	MA0114.1	0.0549
MA0115.1	MA0115.1	0.0183
MA0116.1	MA0116.1	6.67637e-5
MA0117.1	MA0117.1	0.963
MA0119.1	MA0119.1	0.351
MA0122.1	MA0122.1	0.435
MA0124.1	MA0124.1	0.915
MA0125.1	MA0125.1	0.452
MA0131.1	MA0131.1	0.287
MA0135.1	MA0135.1	0.314
MA0136.1	MA0136.1	8.16196e-11
MA0137.2	MA0137.2	0.417
MA0138.2	MA0138.2	0.871
MA0139.1	MA0139.1	0.182
MA0140.1	MA0140.1	0.0245
MA0141.1	MA0141.1	0.0842
MA0142.1	MA0142.1	0.526
MA0143.1	MA0143.1	0.331
MA0144.1	MA0144.1	0.388
MA0145.1	MA0145.1	0.414
MA0146.1	MA0146.1	0.0731
MA0147.1	MA0147.1	1.87856e-5
MA0148.1	MA0148.1	0.138
MA0149.1	MA0149.1	0.0528
MA0150.1	MA0150.1	0.0998
MA0152.1	MA0152.1	0.202
MA0153.1	MA0153.1	0.00585
MA0154.1	MA0154.1	0.06
MA0155.1	MA0155.1	0.909
MA0156.1	MA0156.1	1.87482e-8
MA0157.1	MA0157.1	0.809
MA0159.1	MA0159.1	0.234
MA0160.1	MA0160.1	0.0681
MA0162.1	MA0162.1	0.563
MA0163.1	MA0163.1	1.25764e-15
MA0164.1	MA0164.1	0.967
MA0258.1	MA0258.1	0.0362
MA0259.1	MA0259.1	0.0386

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13053

Novel motif	Logo	P-value
1	1	0.0326
10	10	0.0075
100	100	0.452
101	101	0.294
102	102	0.57
103	103	0.365
104	104	0.96
105	105	0.65
106	106	0.712
107	107	0.553
108	108	0.614
109	109	0.153
11	11	0.0613
110	110	0.15
111	111	0.0145
112	112	0.311
113	113	0.814
114	114	0.0332
115	115	0.751
116	116	0.411
117	117	0.0147
118	118	0.0318
119	119	0.341
12	12	0.942
120	120	0.203
121	121	0.801
122	122	0.604
123	123	0.00603
124	124	0.0966
125	125	0.105
126	126	0.414
127	127	0.198
128	128	0.576
129	129	0.41
13	13	0.0122
130	130	0.83
131	131	0.759
132	132	0.894
133	133	0.0894
134	134	0.321
135	135	0.484
136	136	0.44
137	137	0.525
138	138	0.98
139	139	0.199
14	14	0.807
140	140	0.0041
141	141	0.0885
142	142	0.475
143	143	0.193
144	144	0.809
145	145	0.583
146	146	0.568
147	147	0.0832
148	148	0.157
149	149	0.708
15	15	0.0921
150	150	0.888
151	151	0.963
152	152	0.218
153	153	0.637
154	154	0.856
155	155	0.00698
156	156	0.558
157	157	0.135
158	158	0.355
159	159	0.951
16	16	0.712
160	160	0.111
161	161	0.0505
162	162	0.821
163	163	0.355
164	164	0.0847
165	165	0.924
166	166	0.621
167	167	0.043
168	168	0.242
169	169	0.29
17	17	0.79
18	18	0.59
19	19	0.815
2	2	0.869
20	20	0.626
21	21	0.215
22	22	0.74
23	23	0.225
24	24	0.157
25	25	0.107
26	26	0.0443
27	27	0.36
28	28	0.876
29	29	0.0278
3	3	0.0902
30	30	0.162
31	31	0.501
32	32	0.235
33	33	0.133
34	34	0.869
35	35	0.129
36	36	0.0428
37	37	0.144
38	38	0.658
39	39	0.578
4	4	0.545
40	40	0.29
41	41	0.712
42	42	0.209
43	43	0.459
44	44	0.0498
45	45	0.468
46	46	0.0586
47	47	0.0317
48	48	0.039
49	49	0.125
5	5	0.815
50	50	0.978
51	51	0.788
52	52	0.195
53	53	0.417
54	54	0.714
55	55	0.625
56	56	0.837
57	57	0.0702
58	58	0.314
59	59	0.506
6	6	0.572
60	60	0.957
61	61	0.0705
62	62	0.0784
63	63	0.373
64	64	0.13
65	65	0.874
66	66	0.185
67	67	0.807
68	68	0.455
69	69	0.84
7	7	0.0384
70	70	0.285
71	71	0.0115
72	72	0.708
73	73	0.615
74	74	0.756
75	75	0.0124
76	76	0.114
77	77	0.965
78	78	0.0817
79	79	0.557
8	8	0.0448
80	80	0.135
81	81	0.195
82	82	0.231
83	83	0.464
84	84	0.692
85	85	0.364
86	86	0.855
87	87	0.63
88	88	0.508
89	89	0.542
9	9	0.817
90	90	0.0121
91	91	0.61
92	92	0.842
93	93	0.444
94	94	0.316
95	95	0.0485
96	96	0.641
97	97	0.175
98	98	0.19
99	99	0.522

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13053

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005614
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX007801;DRR008673;DRZ000098;DRZ001483;DRZ011448;DRZ012833
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.35!225.13!GATA2;;chr2:68592406..68592424,+!p1@PLEK!2.26!180.42!PLEK;;chr9:20382446..20382493,-!p4@MLLT3!2.06!114.76!MLLT3;;chr21:39870339..39870443,-!p1@ERG!1.98!94.80!ERG;;chr8:60031619..60031676,-!p1@TOX!1.96!189.80!TOX;;chr7:27205136..27205164,-!p1@HOXA9!1.87!72.65!HOXA9;;chr6:135502408..135502459,+!p2@MYB!1.80!71.05!MYB;;chr9:135854091..135854159,+!p1@GFI1B!1.78!58.68!GFI1B;;chr6:135502501..135502546,+!p1@MYB!1.77!68.46!MYB;;chr7:115670804..115670825,-!p1@TFEC!1.74!53.49!TFEC;;chr11:47400078..47400106,-!p1@SPI1!1.71!49.89!SPI1;;chr20:31350184..31350200,+!p1@DNMT3B!1.68!94.40!DNMT3B;;chr1:25291475..25291511,-!p2@RUNX3!1.65!43.91!RUNX3;;chr7:50344289..50344323,+!p1@IKZF1!1.59!38.32!IKZF1;;chr2:68592394..68592405,+!p2@PLEK!1.59!37.92!PLEK;;chr12:54694758..54694805,-!p1@NFE2!1.58!44.11!NFE2;;chr14:75988771..75988826,+!p1@BATF!1.54!44.71!BATF;;chr2:219849012..219849065,-!p1@FEV!1.53!32.53!FEV;;chr11:47399947..47399961,-!p3@SPI1!1.51!31.53!SPI1;;chr19:13213511..13213545,-!p2@LYL1!1.50!33.13!LYL1;;chr8:116673894..116673913,-!p12@TRPS1!1.49!29.74!TRPS1;;chr12:54694807..54694832,-!p3@NFE2!1.46!27.94!NFE2;;chr7:27205106..27205134,-!p2@HOXA9!1.46!27.54!HOXA9;;chr2:219849897..219849928,-!p2@FEV!1.43!25.75!FEV;;chr11:113930425..113930471,+!p1@ZBTB16!1.42!36.52!ZBTB16;;chr8:60031534..60031553,-!p8@TOX!1.41!24.75!TOX;;chr11:47399996..47400014,-!p4@SPI1!1.38!23.15!SPI1;;chr2:214014959..214015006,-!p4@IKZF2!1.38!23.15!IKZF2;;chr8:60031563..60031574,-!p7@TOX!1.34!20.96!TOX;;chr7:27192185..27192209,-!p1@HOXA3!1.34!20.76!HOXA3;;chr20:50159198..50159299,-!p1@NFATC2!1.31!28.34!NFATC2;;chr12:11802547..11802560,+!p5@ETV6!1.29!25.55!ETV6;;chr19:22235279..22235301,+!p1@ZNF257!1.26!32.13!ZNF257;;chr2:214015343..214015366,-!p3@IKZF2!1.26!17.36!IKZF2;;chr1:25256756..25256774,-!p1@RUNX3!1.23!29.94!RUNX3;;chr19:33793430..33793447,-!p1@CEBPA!1.22!64.86!CEBPA;;chr2:214013461..214013517,-!p6@IKZF2!1.22!15.57!IKZF2;;chr8:145669791..145669834,-!p1@TONSL!1.21!43.31!TONSL;;chr8:116681409..116681431,-!p2@TRPS1!1.21!40.91!TRPS1;;chr7:50343634..50343717,+!p2@IKZF1!1.21!15.37!IKZF1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.19!14.57!TFCP2L1;;chr2:16080659..16080685,+!p1@MYCN!1.17!13.77!MYCN;;chr7:27213893..27213954,-!p1@HOXA10!1.17!13.77!HOXA10;;chr8:128748308..128748324,+!p2@MYC!1.15!362.84!MYC;;chr6:144385698..144385742,-!p2@PLAGL1!1.15!15.97!PLAGL1;;chr2:16082155..16082169,+!p3@MYCN!1.15!12.97!MYCN;;chr6:15246200..15246214,+!p2@JARID2!1.14!35.13!JARID2;;chr3:18486354..18486377,-!p2@SATB1!1.14!15.97!SATB1;;chr6:20402102..20402152,+!p1@E2F3!1.13!51.69!E2F3;;chr19:13213662..13213686,-!p1@LYL1!1.13!18.56!LYL1;;chr6:135502472..135502489,+!p3@MYB!1.13!12.57!MYB;;chr7:27196217..27196246,-!p2@HOXA7!1.13!12.37!HOXA7;;chr7:50344251..50344288,+!p3@IKZF1!1.13!12.37!IKZF1;;chr1:47697539..47697573,-!p3@TAL1!1.13!12.37!TAL1;;chr2:60780607..60780624,-!p2@BCL11A!1.12!37.12!BCL11A;;chr8:60031682..60031710,-!p2@TOX!1.12!19.96!TOX;;chr8:86089417..86089440,+!p2@E2F5!1.11!23.95!E2F5;;chr2:214015111..214015179,-!p1@IKZF2!1.11!21.55!IKZF2;;chr17:42295777..42295816,-!p7@UBTF!1.11!14.37!UBTF;;chr2:219849805..219849819,-!p3@FEV!1.10!11.58!FEV;;chr10:94449703..94449718,+!p1@HHEX!1.05!40.32!HHEX;;chr17:42295682..42295731,-!p17@UBTF!1.05!10.18!UBTF;;chr19:20188776..20188826,+!p1@ZNF90!1.04!27.14!ZNF90;;chr19:22817119..22817145,+!p1@ZNF492!1.04!16.96!ZNF492;;chr8:116680833..116680881,-!p7@TRPS1!1.02!14.57!TRPS1;;chr8:128747661..128747703,+!p6@MYC!1.02!12.77!MYC;;chr1:92951607..92951661,-!p1@GFI1!1.02!9.58!GFI1;;chr17:40441354..40441410,+!p2@STAT5A!1.01!9.18!STAT5A;;chr21:36421535..36421610,-!p2@RUNX1!1.00!33.13!RUNX1;;chr10:94449675..94449694,+!p2@HHEX!1.00!24.55!HHEX;;chr2:121493425..121493474,+!p1@GLI2!1.00!20.16!GLI2;;chr17:46622205..46622218,-!p3@HOXB2!1.00!10.58!HOXB2;;chr12:54785074..54785122,-!p2@ZNF385A!0.99!13.57!ZNF385A;;chr11:113930401..113930422,+!p3@ZBTB16!0.99!8.78!ZBTB16;;chr13:41593425..41593480,-!p1@ELF1!0.98!56.28!ELF1;;chr7:64126535..64126559,+!p2@ZNF107!0.98!18.56!ZNF107;;chr4:57522674..57522699,-!p5@HOPX!0.98!8.58!HOPX;;chr19:45579725..45579743,-!p1@ZNF296!0.97!38.32!ZNF296;;chr4:57522598..57522664,-!p3@HOPX!0.97!8.38!HOPX;;chr8:116680215..116680245,-!p6@TRPS1!0.96!12.97!TRPS1;;chr11:47400032..47400043,-!p5@SPI1!0.96!8.18!SPI1;;chr11:47400045..47400060,-!p6@SPI1!0.96!8.18!SPI1;;chr3:128206762..128206781,-!p2@GATA2!0.94!50.09!GATA2;;chr7:63505799..63505904,+!p1@ZNF727!0.94!7.78!ZNF727;;chr11:128563948..128564003,+!p1@FLI1!0.93!93.00!FLI1;;chr7:128577972..128578047,+!p1@IRF5!0.93!12.17!IRF5;;chr8:60031809..60031835,-!p4@TOX!0.93!9.78!TOX;;chr1:23857698..23857733,-!p1@E2F2!0.92!13.77!E2F2;;chr20:42295713..42295738,+!p2@MYBL2!0.91!43.71!MYBL2;;chr20:42295745..42295765,+!p1@MYBL2!0.90!118.95!MYBL2;;chr3:141747459..141747475,-!p1@TFDP2!0.90!61.07!TFDP2;;chr19:58545454..58545498,+!p1@ZSCAN1!0.90!6.99!ZSCAN1;;chr19:13213555..13213568,-!p5@LYL1!0.89!6.79!LYL1;;chr19:23299814..23299844,+!p1@ZNF730!0.88!8.18!ZNF730;;chr19:23433144..23433204,-!p1@ZNF724P!0.87!30.54!ZNF724P;;chr8:86089369..86089408,+!p1@E2F5!0.87!18.36!E2F5;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.87!6.39!PEG3;;chr3:63953435..63953499,+!p1@ATXN7!0.87!6.39!ATXN7;;chr19:57183114..57183145,-!p1@ZNF835!0.86!6.99!ZNF835;;chr7:137620650..137620677,-!p3@CREB3L2!0.86!6.19!CREB3L2;;chr8:60031762..60031803,-!p3@TOX!0.85!9.18!TOX;;chr19:20011744..20011770,+!p1@ZNF93!0.84!24.55!ZNF93;;chr17:41277372..41277418,-!p1@BRCA1!0.84!22.95!BRCA1;;chr11:19262461..19262476,-!p5@E2F8!0.84!5.99!E2F8;;chr19:24097706..24097731,+!p2@ZNF726!0.83!11.58!ZNF726;;chr11:47399920..47399931,-!p7@SPI1!0.83!5.79!SPI1;;chr11:130184470..130184533,-!p2@ZBTB44!0.82!16.37!ZBTB44;;chr6:157099387..157099403,+!p8@ARID1B!0.82!7.58!ARID1B;;chr17:46622229..46622257,-!p6@HOXB2!0.82!6.59!HOXB2;;chrY:2803415..2803468,+!p1@ZFY!0.82!5.59!ZFY;;chr1:45805872..45805900,+!p2@TOE1!0.81!13.97!TOE1;;chr1:247171316..247171336,-!p3@ZNF695!0.81!8.38!ZNF695;;chr11:47400062..47400077,-!p2@SPI1!0.81!5.39!SPI1;;chr9:117150254..117150271,-!p1@AKNA!0.80!15.37!AKNA;;chr17:46622114..46622138,-!p4@HOXB2!0.80!8.38!HOXB2;;chr14:75988831..75988847,+!p2@BATF!0.79!5.19!BATF;;chr6:135513595..135513617,+!p4@MYB!0.79!5.19!MYB;;chr11:19262421..19262455,-!p3@E2F8!0.79!5.19!E2F8;;chr2:219849784..219849798,-!p5@FEV!0.79!5.19!FEV;;chr2:100759037..100759058,-!p2@AFF3!0.78!4.99!AFF3;;chr1:158978768..158978800,+!p8@IFI16!0.78!4.99!IFI16;;chr19:22034809..22034878,-!p2@ZNF43!0.77!18.76!ZNF43;;chr6:21597765..21597779,+!p2@SOX4!0.76!41.91!SOX4;;chr19:21106081..21106115,+!p2@ZNF85!0.76!14.97!ZNF85;;chr19:23941647..23941672,-!p2@ZNF681!0.76!8.38!ZNF681;;chr2:192015750..192015793,-!p2@STAT4!0.76!6.59!STAT4;;chr8:60031840..60031869,-!p5@TOX!0.76!4.79!TOX;;chr12:11802575..11802592,+!p6@ETV6!0.75!6.99!ETV6;;chr8:116681108..116681120,-!p9@TRPS1!0.75!5.99!TRPS1;;chr1:158979686..158979745,+!p1@IFI16!0.74!166.85!IFI16;;chrX:70503529..70503549,+!p2@NONO!0.74!26.34!NONO;;chr1:35656508..35656584,-!p2@SFPQ!0.74!15.57!SFPQ;;chr2:145277640..145277771,-!p1@ZEB2!0.73!65.06!ZEB2;;chr12:54785054..54785072,-!p4@ZNF385A!0.73!4.99!ZNF385A;;chr8:60031934..60031986,-!p6@TOX!0.73!4.39!TOX;;chr7:64126503..64126528,+!p1@ZNF107!0.72!33.73!ZNF107;;chr2:219849175..219849187,-!p4@FEV!0.72!4.19!FEV;;chr19:11959532..11959593,+!p1@ZNF439!0.71!17.76!ZNF439;;chr19:12203100..12203132,+!p1@ZNF788!0.71!8.98!ZNF788;;chr1:202777535..202777556,-!p1@KDM5B!0.70!151.48!KDM5B;;chr19:20278012..20278034,+!p1@ZNF486!0.70!38.32!ZNF486;;chr16:29819403..29819442,+!p5@MAZ!0.70!37.52!MAZ;;chr17:40440481..40440550,+!p1@STAT5A!0.70!32.93!STAT5A;;chr14:74226961..74227020,-!p1@C14orf43!0.70!29.54!C14orf43;;chr19:24097675..24097699,+!p1@ZNF726!0.70!14.77!ZNF726;;chr7:50348268..50348366,+!p4@IKZF1!0.70!3.99!IKZF1;;chr14:55493763..55493824,-!p1@WDHD1!0.69!33.13!WDHD1;;chr7:64838786..64838809,+!p2@ZNF92!0.69!25.15!ZNF92;;chr8:128747757..128747800,+!p7@MYC!0.69!5.59!MYC;;chr17:46622440..46622477,-!p5@HOXB2!0.69!4.39!HOXB2;;chr6:15246261..15246312,+!p1@JARID2!0.68!105.98!JARID2;;chr12:11802600..11802685,+!p1@ETV6!0.68!66.46!ETV6;;chr19:20011775..20011800,+!p2@ZNF93!0.68!7.38!ZNF93;;chr17:46622175..46622186,-!p12@HOXB2!0.68!3.79!HOXB2;;chr2:214016254..214016282,-!p7@IKZF2!0.68!3.79!IKZF2;;chr4:57522513..57522548,-!p4@HOPX!0.68!3.79!HOPX;;chr8:128748470..128748487,+!p1@MYC!0.67!466.02!MYC;;chr1:226595741..226595818,-!p1@PARP1!0.67!220.54!PARP1;;chr19:21264991..21265026,+!p1@ZNF714!0.67!27.74!ZNF714;;chr10:51572408..51572454,+!p3@NCOA4!0.67!24.55!NCOA4;;chr11:130184311..130184362,-!p4@ZBTB44!0.67!7.18!ZBTB44;;chr3:141747441..141747452,-!p4@TFDP2!0.67!5.39!TFDP2;;chr2:60778035..60778060,-!p4@BCL11A!0.67!4.59!BCL11A;;chr7:64363638..64363667,+!p1@ZNF273!0.66!20.36!ZNF273;;chr20:62680984..62680999,-!p1@SOX18!0.66!4.99!SOX18;;chr4:57522166..57522260,-!p2@HOPX!0.66!4.19!HOPX;;chr2:100759010..100759035,-!p1@AFF3!0.66!3.59!AFF3;;chr21:39870648..39870655,-!p8@ERG!0.66!3.59!ERG;;chr8:86089472..86089483,+!p9@E2F5!0.66!3.59!E2F5;;chr11:32457103..32457123,-!p3@WT1!0.66!3.59!WT1;;chr12:54694653..54694672,-!p2@NFE2!0.66!3.59!NFE2;;chr19:22605136..22605154,-!p1@ZNF98!0.66!3.59!ZNF98;;chr1:211433275..211433335,+!p2@RCOR3!0.65!12.17!RCOR3;;chr16:29819446..29819471,+!p9@MAZ!0.65!11.58!MAZ;;chr9:2015306..2015323,+!p3@SMARCA2!0.65!10.18!SMARCA2;;chr2:192015701..192015743,-!p1@STAT4!0.65!4.99!STAT4;;chr16:88519669..88519726,+!p1@ZFPM1!0.64!35.33!ZFPM1;;chr8:128750654..128750793,+!p3@MYC!0.64!15.57!MYC;;chr19:12405606..12405629,-!p2@ZNF44!0.64!7.18!ZNF44;;chr19:21265028..21265052,+!p2@ZNF714!0.64!6.59!ZNF714;;chr6:20402070..20402082,+!p5@E2F3!0.64!3.99!E2F3;;chr19:45579762..45579772,-!p2@ZNF296!0.64!3.79!ZNF296;;chr12:2986275..2986363,-!p1@FOXM1!0.63!38.52!FOXM1;;chr19:58095501..58095535,+!p1@ZIK1!0.63!13.17!ZIK1;;chr17:46622070..46622109,-!p1@HOXB2!0.63!8.18!HOXB2;;chr6:15246217..15246228,+!p3@JARID2!0.63!6.39!JARID2;;chr11:113930291..113930339,+!p2@ZBTB16!0.63!5.79!ZBTB16;;chr11:19263192..19263222,-!p2@E2F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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M0%2529%2520cell%2520line%253aKG-1.CNhs13053.10827-111C8.hg38.nobarcode.ctss.bed.gz
 |id=FF:10827-111C8
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101883
+|is_a=EFO:0002091;;FF:0000210;;FF:0101883
+|is_obsolete=
+|library_id=CNhs13053
+|library_id_phase_based=2:CNhs13053
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10827
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10827
 |name=acute myeloid leukemia (FAB M0) cell line:KG-1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13053,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=111
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=149.2695
 |sample_age=59
+|sample_category=cell lines
 |sample_cell_catalog=RCB1166
 |sample_cell_line=KG-1
@@ Line 77: / Line 99: @@
 |sample_tissue=blood
 |top_motifs=MYB:2.21701417088;E2F1..5:1.86707680521;YY1:1.76199269368;AIRE:1.70772420317;IKZF2:1.6438924376;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.57515877215;ZBTB16:1.56144577166;HAND1,2:1.49632836851;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.45394918981;POU3F1..4:1.38847103381;ALX1:1.26734603778;DMAP1_NCOR{1,2}_SMARC:1.26047341298;STAT1,3:1.14166253823;ZNF143:1.13081023557;GATA6:1.12335965188;FOX{I1,J2}:1.1190229842;NKX2-2,8:1.10938720149;ELF1,2,4:1.0379299026;TOPORS:1.03367644296;RUNX1..3:1.01942115716;SPIB:1.00994269872;TEF:0.991317398057;PITX1..3:0.956512633069;NR5A1,2:0.822169457679;PAX4:0.774592178844;FOXA2:0.766632053074;ELK1,4_GABP{A,B1}:0.759515374215;CDX1,2,4:0.750108798469;HBP1_HMGB_SSRP1_UBTF:0.71295345849;SPI1:0.690094688843;NRF1:0.68982347884;ARID5B:0.679668794081;FOXP3:0.603250282871;BREu{core}:0.581988848186;NFY{A,B,C}:0.569593533925;GATA4:0.535444933894;ETS1,2:0.528492029655;POU1F1:0.464558531417;EVI1:0.460053125192;HOX{A6,A7,B6,B7}:0.447294645562;HES1:0.407177506518;CUX2:0.38379925284;RXR{A,B,G}:0.3819376304;MYOD1:0.342289765797;NKX6-1,2:0.340323030078;NKX2-3_NKX2-5:0.331947109603;ZNF384:0.283126987604;FOXP1:0.252738606171;FOXD3:0.242929696656;NKX3-2:0.211924742701;NKX3-1:0.197782037663;NANOG{mouse}:0.190368581654;PDX1:0.178961274471;FOXM1:0.163733665884;PRRX1,2:0.162139505451;RBPJ:0.158822234933;CRX:0.157566395936;RXRA_VDR{dimer}:0.139253182796;HOX{A4,D4}:0.115179829174;IRF1,2:0.0977174818411;KLF4:0.0908359871172;HNF4A_NR2F1,2:0.0885785687876;VSX1,2:0.0669652022297;FOXQ1:0.0646957451154;OCT4_SOX2{dimer}:0.0567607617058;TGIF1:0.0555953825728;BPTF:0.0551385645864;PBX1:0.0365899796441;UFEwm:0.0362905779989;PAX8:0.0341975352051;POU5F1:0.0184437150881;SNAI1..3:0.0181158218685;PAX6:-0.0152749412018;FOX{F1,F2,J1}:-0.0427113897886;GCM1,2:-0.0700123298805;ONECUT1,2:-0.0754935273476;CREB1:-0.0831729424615;ATF5_CREB3:-0.0947500365465;TFDP1:-0.0983362729035;STAT5{A,B}:-0.100595025727;NFIL3:-0.114845153441;HSF1,2:-0.143724425695;HOXA9_MEIS1:-0.178717683237;ESR1:-0.192786060766;PAX3,7:-0.208162441723;POU2F1..3:-0.217006326638;RREB1:-0.220768041504;HMGA1,2:-0.230938913604;ALX4:-0.231196832239;HNF1A:-0.232937298758;TLX2:-0.233541832024;ZEB1:-0.244492512299;NFKB1_REL_RELA:-0.248388534933;CDC5L:-0.256108103572;NKX2-1,4:-0.272268054694;EN1,2:-0.27556323285;REST:-0.277859269058;NR6A1:-0.284470180304;RORA:-0.335558731617;NFE2L1:-0.336723148116;PPARG:-0.356981976005;bHLH_family:-0.360346736893;SOX{8,9,10}:-0.376619193816;POU6F1:-0.376679784716;ZIC1..3:-0.395748602791;NR1H4:-0.396017193945;ZNF423:-0.402266071686;AR:-0.410948097131;GFI1:-0.412481255149;NANOG:-0.427756386473;HIF1A:-0.428661200982;ZNF238:-0.429033707888;EP300:-0.440084457554;ZNF148:-0.474797358548;SOX17:-0.500027300866;RFX2..5_RFXANK_RFXAP:-0.513875151043;GZF1:-0.515159548689;TFAP4:-0.515306011847;AHR_ARNT_ARNT2:-0.528855023604;LHX3,4:-0.549581926299;NFE2:-0.55230670012;DBP:-0.554367637329;CEBPA,B_DDIT3:-0.555506589035;FOSL2:-0.555869917518;IRF7:-0.561440890851;FOS_FOS{B,L1}_JUN{B,D}:-0.611932152041;XBP1:-0.62969457476;MEF2{A,B,C,D}:-0.649020292953;BACH2:-0.657772356892;PAX2:-0.659109870268;PRDM1:-0.667495961206;SOX5:-0.67500181808;MYBL2:-0.68957717169;FOXO1,3,4:-0.712587447451;ESRRA:-0.712659988627;ZFP161:-0.718756813407;PAX5:-0.719989635003;MZF1:-0.800037459565;ATF4:-0.811578900233;HLF:-0.813199916273;MYFfamily:-0.875066826785;SMAD1..7,9:-0.8886004523;HIC1:-0.889095009545;RFX1:-0.897169883275;NFATC1..3:-0.917914309136;T:-0.938672717022;TAL1_TCF{3,4,12}:-0.980818085219;SRF:-0.997322779171;LEF1_TCF7_TCF7L1,2:-0.999184692174;HOX{A5,B5}:-1.00665821768;GTF2A1,2:-1.02605809909;SREBF1,2:-1.02703711545;IKZF1:-1.02837647946;STAT2,4,6:-1.02899260664;PATZ1:-1.05803387182;NFE2L2:-1.05922720806;ATF2:-1.07338682409;FOXN1:-1.08930869178;SOX2:-1.10778355538;SPZ1:-1.12472604943;NHLH1,2:-1.12689839308;GTF2I:-1.13688314022;LMO2:-1.14586104396;HMX1:-1.15789165025;EBF1:-1.16746652945;TP53:-1.22901386992;MAFB:-1.23824449024;TFAP2B:-1.26070680783;NFIX:-1.26859150441;GLI1..3:-1.27302210617;ZBTB6:-1.27651830927;FOXL1:-1.30352281687;PAX1,9:-1.34089232015;JUN:-1.34549847419;ATF6:-1.35448820842;TEAD1:-1.36494914914;TFAP2{A,C}:-1.37460334158;MED-1{core}:-1.38928582471;GFI1B:-1.39100025938;EGR1..3:-1.48941975163;TBP:-1.49240409851;MTF1:-1.52908550436;ADNP_IRX_SIX_ZHX:-1.56946985164;FOX{D1,D2}:-1.59163032007;TBX4,5:-1.65830058019;MAZ:-1.67940710889;NR3C1:-1.74092705013;XCPE1{core}:-1.79636078818;TLX1..3_NFIC{dimer}:-1.87020815705;TFCP2:-1.9450601993;MTE{core}:-2.12010335288;SP1:-2.12865473632
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10827-111C8;search_select_hide=table117:FF:10827-111C8
 }}

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FF:10827-111C8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:07, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0