FF:11264-116G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005974 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005974 | ||
|accession_numbers=CAGE;DRX008220;DRR009092;DRZ000517;DRZ001902;DRZ011867;DRZ013252 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037034;DRR041400;DRZ007042 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.35!291.55!SOX18;;chr21:39870339..39870443,-!p1@ERG!2.03!106.13!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.98!95.23!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.93!84.74!SOX17;;chr17:6926362..6926377,+!p1@BCL6B!1.82!64.60!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.71!50.76!HES2;;chr18:53068911..53068935,-!p4@TCF4!1.62!45.31!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.14!ZBED1;;chr11:65429891..65429915,-!p7@RELA!1.45!27.27!RELA;;chr6:34204921..34204939,+!p3@HMGA1!1.44!755.10!HMGA1;;chr12:96588368..96588394,+!p3@ELK3!1.43!67.96!ELK3;;chr6:126070769..126070801,+!p1@HEY2!1.43!29.78!HEY2;;chr19:13213511..13213545,-!p2@LYL1!1.43!28.11!LYL1;;chr18:19749541..19749557,+!p1@GATA6!1.41!75.09!GATA6;;chr10:94449703..94449718,+!p1@HHEX!1.37!85.58!HHEX;;chr19:13213399..13213414,-!p6@LYL1!1.25!16.78!LYL1;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.78!GATA4;;chr16:86600426..86600441,+!p1@FOXC2!1.23!39.01!FOXC2;;chr5:92918919..92918942,+!p1@NR2F1!1.19!63.76!NR2F1;;chr3:128206762..128206781,-!p2@GATA2!1.12!75.09!GATA2;;chr20:6748325..6748352,+!p1@BMP2!1.11!17.20!BMP2;;chr7:35293685..35293718,-!p1@TBX20!1.08!10.91!TBX20;;chr19:13213555..13213568,-!p5@LYL1!1.06!10.49!LYL1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!28.11!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.91!MECOM;;chr2:237077022..237077038,-!p1@GBX2!1.01!9.23!GBX2;;chr19:13213662..13213686,-!p1@LYL1!1.00!13.42!LYL1;;chr15:83953397..83953425,-!p1@BNC1!0.99!10.07!BNC1;;chr9:16705069..16705086,-!p3@BNC2!0.97!8.39!BNC2;;chr1:47695003..47695042,-!p2@TAL1!0.97!8.39!TAL1;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.42!TFAP2A;;chr4:174451370..174451387,-!p1@HAND2!0.95!7.97!HAND2;;chr17:46655672..46655697,-!p3@HOXB4!0.93!7.55!HOXB4;;chr1:200008734..200008765,+!p2@NR5A2!0.93!7.55!NR5A2;;chr7:149470641..149470694,-!p1@ZNF467!0.91!33.98!ZNF467;;chr20:42543441..42543497,+!p1@TOX2!0.91!33.56!TOX2;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.49!HMGA2;;chr10:31288370..31288393,-!p3@ZNF438!0.91!7.13!ZNF438;;chr14:38064429..38064486,-!p1@FOXA1!0.91!7.13!FOXA1;;chr17:8027418..8027432,-!p1@HES7!0.91!7.13!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.91!7.13!TCF4;;chr11:65430554..65430579,-!p3@RELA!0.90!18.46!RELA;;chr4:57522166..57522260,-!p2@HOPX!0.90!7.97!HOPX;;chr19:46801639..46801699,+!p1@HIF3A!0.89!6.71!HIF3A;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.95!ZNF521;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.52!TOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.85!724.06!HMGA1;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.20!HHEX;;chr15:96876966..96877017,+!p12@NR2F2!0.84!8.81!NR2F2;;chr18:53068982..53068993,-!p20@TCF4!0.84!5.87!TCF4;;chr5:92918956..92918969,+!p4@NR2F1!0.83!6.29!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.15!MLLT11;;chr12:66218183..66218209,+!p4@HMGA2!0.82!11.33!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.81!10.07!TBX18;;chr5:92918894..92918912,+!p2@NR2F1!0.80!18.46!NR2F1;;chr19:1652555..1652568,-!p2@TCF3!0.79!22.65!TCF3;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.55!GATA6;;chr15:96874012..96874042,+!p2@NR2F2!0.78!49.08!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.78!26.85!NFE2L3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.29!TFAP2A;;chr8:55370720..55370733,+!p2@SOX17!0.78!5.03!SOX17;;chr18:53068940..53068951,-!p21@TCF4!0.78!5.03!TCF4;;chr3:25469815..25469866,+!p3@RARB!0.78!5.03!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.78!5.03!HOPX;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!382.58!TAX1BP3;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.39!ATOH8;;chr3:168864315..168864339,-!p2@MECOM!0.77!8.39!MECOM;;chr15:96873984..96873999,+!p3@NR2F2!0.76!38.59!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.91!HMGA2;;chr2:46524537..46524553,+!p1@EPAS1!0.75!510.11!EPAS1;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.39!ETV4;;chr19:56152332..56152347,+!p4@ZNF580!0.75!11.33!ZNF580;;chr8:37963466..37963506,+!p3@ASH2L!0.75!5.87!ASH2L;;chr7:115670804..115670825,-!p1@TFEC!0.75!4.61!TFEC;;chr7:139741594..139741615,-!p5@PARP12!0.75!4.61!PARP12;;chr14:74256787..74256858,-!p6@C14orf43!0.75!4.61!C14orf43;;chr17:6926381..6926392,+!p2@BCL6B!0.75!4.61!BCL6B;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.83!FLI1;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!36.92!ZMAT3;;chr9:14314131..14314147,-!p2@NFIB!0.74!27.69!NFIB;;chr11:65667884..65667895,-!p2@FOSL1!0.74!19.30!FOSL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.72!12.17!ZFPM2;;chr15:66994561..66994597,+!p2@SMAD6!0.72!10.91!SMAD6;;chr19:13213465..13213478,-!p7@LYL1!0.72!4.19!LYL1;;chr4:57522674..57522699,-!p5@HOPX!0.72!4.19!HOPX;;chr6:28321971..28321995,-!p1@ZNF323!0.72!4.19!ZNF323;;chr12:3068544..3068597,+!p1@TEAD4!0.71!27.69!TEAD4;;chr2:74730430..74730451,-!p1@LBX2!0.71!7.13!LBX2;;chr19:49864746..49864780,-!p2@TEAD2!0.71!5.87!TEAD2;;chr8:106330696..106330719,+!p2@ZFPM2!0.71!5.45!ZFPM2;;chr15:96873921..96873946,+!p1@NR2F2!0.70!130.04!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.29!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!0.70!6.29!HOXB4;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.55!GATA6;;chr5:92920456..92920488,+!p9@NR2F1!0.69!4.61!NR2F1;;chr6:21593973..21593988,+!p1@SOX4!0.68!158.99!SOX4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.68!18.04!LRRFIP2;;chr15:96874145..96874166,+!p7@NR2F2!0.68!7.97!NR2F2;;chr1:170633348..170633399,+!p2@PRRX1!0.68!5.45!PRRX1;;chr1:47696918..47696935,-!p6@TAL1!0.68!3.78!TAL1;;chr1:61869752..61869782,+!p13@NFIA!0.68!3.78!NFIA;;chr16:86600870..86600921,+!p2@FOXC2!0.68!3.78!FOXC2;;chr2:237076992..237077008,-!p2@GBX2!0.68!3.78!GBX2;;chr3:25470156..25470227,+!p2@RARB!0.68!3.78!RARB;;chr4:2263809..2263854,-!p1@MXD4!0.67!164.44!MXD4;;chr22:38597987..38598021,+!p2@MAFF!0.67!25.59!MAFF;;chr11:65667846..65667868,-!p1@FOSL1!0.66!109.49!FOSL1;;chr19:49865646..49865718,-!p1@TEAD2!0.66!35.24!TEAD2;;chr14:21566540..21566580,-!p2@ZNF219!0.66!5.03!ZNF219;;chr9:14314106..14314119,-!p5@NFIB!0.65!6.71!NFIB;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.23!NR2F2;;chr18:53068893..53068902,-!p28@TCF4!0.64!3.36!TCF4;;chr5:92919452..92919496,+!p11@NR2F1!0.64!3.36!NR2F1;;chr1:200011711..200011752,+!p3@NR5A2!0.64!3.36!NR5A2;;chr4:174450089..174450153,-!p2@HAND2!0.64!3.36!HAND2;;chr1:23885981..23886002,-!p1@ID3!0.63!690.08!ID3;;chr18:51750839..51750885,-!p2@MBD2!0.63!38.59!MBD2;;chr1:158979792..158979814,+!p2@IFI16!0.63!36.50!IFI16;;chr15:96873861..96873872,+!p9@NR2F2!0.63!7.55!NR2F2;;chr19:53496768..53496799,-!p1@ZNF702P!0.63!5.45!ZNF702P;;chr12:66218836..66218888,+!p1@HMGA2!0.62!34.82!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.62!23.91!HIC1;;chr2:85360499..85360598,+!p1@TCF7L1!0.62!20.97!TCF7L1;;chr9:35732647..35732678,+!p2@CREB3!0.62!20.56!CREB3;;chr11:65686732..65686756,+!p2@DRAP1!0.62!15.52!DRAP1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.62!10.07!ZC3H7B;;chr10:31288398..31288455,-!p2@ZNF438!0.62!3.78!ZNF438;;chr11:65430535..65430549,-!p4@RELA!0.62!3.78!RELA;;chr8:128749984..128750033,+!p4@MYC!0.61!13.00!MYC;;chr12:3068501..3068515,+!p4@TEAD4!0.61!5.87!TEAD4;;chr1:158985493..158985535,+!p4@IFI16!0.61!5.03!IFI16;;chr9:35732514..35732530,+!p5@CREB3!0.61!4.61!CREB3;;chr10:8096772..8096787,+!p2@GATA3!0.61!3.78!GATA3;;chr12:66218152..66218174,+!p10@HMGA2!0.61!3.36!HMGA2;;chr17:4890695..4890773,-!p2@CAMTA2!0.60!10.91!CAMTA2;;chr1:151032922..151032951,+!p2@MLLT11!0.60!5.45!MLLT11;;chr6:1610293..1610310,+!p1@FOXC1!0.60!5.45!FOXC1;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.78!TBX18;;chr15:83953373..83953386,-!p2@BNC1!0.60!2.94!BNC1;;chr18:19749504..19749515,+!p5@GATA6!0.60!2.94!GATA6;;chr13:41240717..41240735,-!p2@FOXO1!0.59!23.91!FOXO1;;chr16:29819446..29819471,+!p9@MAZ!0.59!10.07!MAZ;;chr18:77155922..77155939,+!p1@NFATC1!0.59!9.23!NFATC1;;chr7:100076765..100076861,-!p1@TSC22D4!0.58!120.82!TSC22D4;;chr6:44233252..44233296,-!p1@NFKBIE!0.58!33.98!NFKBIE;;chr11:65687222..65687240,+!p7@DRAP1!0.58!3.78!DRAP1;;chr11:62368696..62368759,-!p4@MTA2!0.57!20.56!MTA2;;chr14:74226961..74227020,-!p1@C14orf43!0.56!21.39!C14orf43;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.91!TEAD4;;chr2:242576431..242576458,-!p3@THAP4!0.56!7.55!THAP4;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.61!TSC22D4;;chr3:25469724..25469773,+!p1@RARB!0.56!4.19!RARB;;chr2:46602901..46602926,+!p7@EPAS1!0.56!3.78!EPAS1;;chr5:92919100..92919135,+!p3@NR2F1!0.56!3.36!NR2F1;;chr15:67357924..67357952,+!p2@SMAD3!0.55!20.97!SMAD3;;chr17:41623009..41623053,-!p4@ETV4!0.55!4.61!ETV4;;chr2:85980951..85981004,+!p1@ATOH8!0.55!4.61!ATOH8;;chr3:21792585..21792625,-!p2@ZNF385D!0.55!2.94!ZNF385D;;chr5:92918860..92918871,+!p10@NR2F1!0.55!2.94!NR2F1;;chr7:27153454..27153469,-!p2@HOXA3!0.55!2.52!HOXA3;;chr3:147111198..147111225,+!p4@ZIC1!0.55!2.52!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.55!2.52!ZNF385D;;chr4:57522513..57522548,-!p4@HOPX!0.55!2.52!HOPX;;chr1:47697539..47697573,-!p3@TAL1!0.55!2.52!TAL1;;chr16:30406423..30406447,+!p4@ZNF48!0.55!2.52!ZNF48;;chr16:86600458..86600461,+!p3@FOXC2!0.55!2.52!FOXC2;;chr15:67358163..67358192,+!p1@SMAD3!0.54!73.83!SMAD3;;chr11:47236489..47236567,+!p2@DDB2!0.54!43.21!DDB2;;chr17:38498594..38498661,+!p2@RARA!0.54!10.07!RARA;;chr16:1429627..1429662,-!p2@UNKL!0.54!8.81!UNKL;;chr19:56652686..56652701,+!p3@ZNF444!0.54!5.03!ZNF444;;chr19:19303794..19303805,+!p5@RFXANK!0.54!2.94!RFXANK;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.50!NFIB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.85!PPP1R13L;;chr18:51750888..51750920,-!p3@MBD2!0.53!21.81!MBD2;;chr20:48599506..48599526,+!p1@SNAI1!0.53!19.30!SNAI1;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.78!ZBTB16;;chr19:13136130..13136165,+!p6@NFIX!0.53!3.36!NFIX;;chr1:221052840..221052875,+!p4@HLX!0.53!2.94!HLX;;chr17:7590797..7590815,-!p1@TP53!0.52!130.04!TP53;;chr8:128748308..128748324,+!p2@MYC!0.52!83.06!MYC;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.08!MYBL2;;chr13:72441315..72441454,-!p1@DACH1!0.52!5.45!DACH1;;chr12:124873357..124873401,-!p1@NCOR2!0.51!33.56!NCOR2;;chr5:321810..321877,+!p1@AHRR!0.51!8.81!AHRR;;chr1:221052776..221052799,+!p1@HLX!0.51!4.61!HLX;;chr1:41827095..41827155,+!p1@FOXO6!0.51!3.36!FOXO6;;chr12:30681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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.35!291.55!SOX18;;chr21:39870339..39870443,-!p1@ERG!2.03!106.13!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.98!95.23!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.93!84.74!SOX17;;chr17:6926362..6926377,+!p1@BCL6B!1.82!64.60!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.71!50.76!HES2;;chr18:53068911..53068935,-!p4@TCF4!1.62!45.31!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.14!ZBED1;;chr11:65429891..65429915,-!p7@RELA!1.45!27.27!RELA;;chr6:34204921..34204939,+!p3@HMGA1!1.44!755.10!HMGA1;;chr12:96588368..96588394,+!p3@ELK3!1.43!67.96!ELK3;;chr6:126070769..126070801,+!p1@HEY2!1.43!29.78!HEY2;;chr19:13213511..13213545,-!p2@LYL1!1.43!28.11!LYL1;;chr18:19749541..19749557,+!p1@GATA6!1.41!75.09!GATA6;;chr10:94449703..94449718,+!p1@HHEX!1.37!85.58!HHEX;;chr19:13213399..13213414,-!p6@LYL1!1.25!16.78!LYL1;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.78!GATA4;;chr16:86600426..86600441,+!p1@FOXC2!1.23!39.01!FOXC2;;chr5:92918919..92918942,+!p1@NR2F1!1.19!63.76!NR2F1;;chr3:128206762..128206781,-!p2@GATA2!1.12!75.09!GATA2;;chr20:6748325..6748352,+!p1@BMP2!1.11!17.20!BMP2;;chr7:35293685..35293718,-!p1@TBX20!1.08!10.91!TBX20;;chr19:13213555..13213568,-!p5@LYL1!1.06!10.49!LYL1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!28.11!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.91!MECOM;;chr2:237077022..237077038,-!p1@GBX2!1.01!9.23!GBX2;;chr19:13213662..13213686,-!p1@LYL1!1.00!13.42!LYL1;;chr15:83953397..83953425,-!p1@BNC1!0.99!10.07!BNC1;;chr9:16705069..16705086,-!p3@BNC2!0.97!8.39!BNC2;;chr1:47695003..47695042,-!p2@TAL1!0.97!8.39!TAL1;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.42!TFAP2A;;chr4:174451370..174451387,-!p1@HAND2!0.95!7.97!HAND2;;chr17:46655672..46655697,-!p3@HOXB4!0.93!7.55!HOXB4;;chr1:200008734..200008765,+!p2@NR5A2!0.93!7.55!NR5A2;;chr7:149470641..149470694,-!p1@ZNF467!0.91!33.98!ZNF467;;chr20:42543441..42543497,+!p1@TOX2!0.91!33.56!TOX2;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.49!HMGA2;;chr10:31288370..31288393,-!p3@ZNF438!0.91!7.13!ZNF438;;chr14:38064429..38064486,-!p1@FOXA1!0.91!7.13!FOXA1;;chr17:8027418..8027432,-!p1@HES7!0.91!7.13!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.91!7.13!TCF4;;chr11:65430554..65430579,-!p3@RELA!0.90!18.46!RELA;;chr4:57522166..57522260,-!p2@HOPX!0.90!7.97!HOPX;;chr19:46801639..46801699,+!p1@HIF3A!0.89!6.71!HIF3A;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.95!ZNF521;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.52!TOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.85!724.06!HMGA1;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.20!HHEX;;chr15:96876966..96877017,+!p12@NR2F2!0.84!8.81!NR2F2;;chr18:53068982..53068993,-!p20@TCF4!0.84!5.87!TCF4;;chr5:92918956..92918969,+!p4@NR2F1!0.83!6.29!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.15!MLLT11;;chr12:66218183..66218209,+!p4@HMGA2!0.82!11.33!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.81!10.07!TBX18;;chr5:92918894..92918912,+!p2@NR2F1!0.80!18.46!NR2F1;;chr19:1652555..1652568,-!p2@TCF3!0.79!22.65!TCF3;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.55!GATA6;;chr15:96874012..96874042,+!p2@NR2F2!0.78!49.08!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.78!26.85!NFE2L3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.29!TFAP2A;;chr8:55370720..55370733,+!p2@SOX17!0.78!5.03!SOX17;;chr18:53068940..53068951,-!p21@TCF4!0.78!5.03!TCF4;;chr3:25469815..25469866,+!p3@RARB!0.78!5.03!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.78!5.03!HOPX;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!382.58!TAX1BP3;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.39!ATOH8;;chr3:168864315..168864339,-!p2@MECOM!0.77!8.39!MECOM;;chr15:96873984..96873999,+!p3@NR2F2!0.76!38.59!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.91!HMGA2;;chr2:46524537..46524553,+!p1@EPAS1!0.75!510.11!EPAS1;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.39!ETV4;;chr19:56152332..56152347,+!p4@ZNF580!0.75!11.33!ZNF580;;chr8:37963466..37963506,+!p3@ASH2L!0.75!5.87!ASH2L;;chr7:115670804..115670825,-!p1@TFEC!0.75!4.61!TFEC;;chr7:139741594..139741615,-!p5@PARP12!0.75!4.61!PARP12;;chr14:74256787..74256858,-!p6@C14orf43!0.75!4.61!C14orf43;;chr17:6926381..6926392,+!p2@BCL6B!0.75!4.61!BCL6B;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.83!FLI1;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!36.92!ZMAT3;;chr9:14314131..14314147,-!p2@NFIB!0.74!27.69!NFIB;;chr11:65667884..65667895,-!p2@FOSL1!0.74!19.30!FOSL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.72!12.17!ZFPM2;;chr15:66994561..66994597,+!p2@SMAD6!0.72!10.91!SMAD6;;chr19:13213465..13213478,-!p7@LYL1!0.72!4.19!LYL1;;chr4:57522674..57522699,-!p5@HOPX!0.72!4.19!HOPX;;chr6:28321971..28321995,-!p1@ZNF323!0.72!4.19!ZNF323;;chr12:3068544..3068597,+!p1@TEAD4!0.71!27.69!TEAD4;;chr2:74730430..74730451,-!p1@LBX2!0.71!7.13!LBX2;;chr19:49864746..49864780,-!p2@TEAD2!0.71!5.87!TEAD2;;chr8:106330696..106330719,+!p2@ZFPM2!0.71!5.45!ZFPM2;;chr15:96873921..96873946,+!p1@NR2F2!0.70!130.04!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.29!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!0.70!6.29!HOXB4;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.55!GATA6;;chr5:92920456..92920488,+!p9@NR2F1!0.69!4.61!NR2F1;;chr6:21593973..21593988,+!p1@SOX4!0.68!158.99!SOX4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.68!18.04!LRRFIP2;;chr15:96874145..96874166,+!p7@NR2F2!0.68!7.97!NR2F2;;chr1:170633348..170633399,+!p2@PRRX1!0.68!5.45!PRRX1;;chr1:47696918..47696935,-!p6@TAL1!0.68!3.78!TAL1;;chr1:61869752..61869782,+!p13@NFIA!0.68!3.78!NFIA;;chr16:86600870..86600921,+!p2@FOXC2!0.68!3.78!FOXC2;;chr2:237076992..237077008,-!p2@GBX2!0.68!3.78!GBX2;;chr3:25470156..25470227,+!p2@RARB!0.68!3.78!RARB;;chr4:2263809..2263854,-!p1@MXD4!0.67!164.44!MXD4;;chr22:38597987..38598021,+!p2@MAFF!0.67!25.59!MAFF;;chr11:65667846..65667868,-!p1@FOSL1!0.66!109.49!FOSL1;;chr19:49865646..49865718,-!p1@TEAD2!0.66!35.24!TEAD2;;chr14:21566540..21566580,-!p2@ZNF219!0.66!5.03!ZNF219;;chr9:14314106..14314119,-!p5@NFIB!0.65!6.71!NFIB;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.23!NR2F2;;chr18:53068893..53068902,-!p28@TCF4!0.64!3.36!TCF4;;chr5:92919452..92919496,+!p11@NR2F1!0.64!3.36!NR2F1;;chr1:200011711..200011752,+!p3@NR5A2!0.64!3.36!NR5A2;;chr4:174450089..174450153,-!p2@HAND2!0.64!3.36!HAND2;;chr1:23885981..23886002,-!p1@ID3!0.63!690.08!ID3;;chr18:51750839..51750885,-!p2@MBD2!0.63!38.59!MBD2;;chr1:158979792..158979814,+!p2@IFI16!0.63!36.50!IFI16;;chr15:96873861..96873872,+!p9@NR2F2!0.63!7.55!NR2F2;;chr19:53496768..53496799,-!p1@ZNF702P!0.63!5.45!ZNF702P;;chr12:66218836..66218888,+!p1@HMGA2!0.62!34.82!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.62!23.91!HIC1;;chr2:85360499..85360598,+!p1@TCF7L1!0.62!20.97!TCF7L1;;chr9:35732647..35732678,+!p2@CREB3!0.62!20.56!CREB3;;chr11:65686732..65686756,+!p2@DRAP1!0.62!15.52!DRAP1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.62!10.07!ZC3H7B;;chr10:31288398..31288455,-!p2@ZNF438!0.62!3.78!ZNF438;;chr11:65430535..65430549,-!p4@RELA!0.62!3.78!RELA;;chr8:128749984..128750033,+!p4@MYC!0.61!13.00!MYC;;chr12:3068501..3068515,+!p4@TEAD4!0.61!5.87!TEAD4;;chr1:158985493..158985535,+!p4@IFI16!0.61!5.03!IFI16;;chr9:35732514..35732530,+!p5@CREB3!0.61!4.61!CREB3;;chr10:8096772..8096787,+!p2@GATA3!0.61!3.78!GATA3;;chr12:66218152..66218174,+!p10@HMGA2!0.61!3.36!HMGA2;;chr17:4890695..4890773,-!p2@CAMTA2!0.60!10.91!CAMTA2;;chr1:151032922..151032951,+!p2@MLLT11!0.60!5.45!MLLT11;;chr6:1610293..1610310,+!p1@FOXC1!0.60!5.45!FOXC1;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.78!TBX18;;chr15:83953373..83953386,-!p2@BNC1!0.60!2.94!BNC1;;chr18:19749504..19749515,+!p5@GATA6!0.60!2.94!GATA6;;chr13:41240717..41240735,-!p2@FOXO1!0.59!23.91!FOXO1;;chr16:29819446..29819471,+!p9@MAZ!0.59!10.07!MAZ;;chr18:77155922..77155939,+!p1@NFATC1!0.59!9.23!NFATC1;;chr7:100076765..100076861,-!p1@TSC22D4!0.58!120.82!TSC22D4;;chr6:44233252..44233296,-!p1@NFKBIE!0.58!33.98!NFKBIE;;chr11:65687222..65687240,+!p7@DRAP1!0.58!3.78!DRAP1;;chr11:62368696..62368759,-!p4@MTA2!0.57!20.56!MTA2;;chr14:74226961..74227020,-!p1@C14orf43!0.56!21.39!C14orf43;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.91!TEAD4;;chr2:242576431..242576458,-!p3@THAP4!0.56!7.55!THAP4;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.61!TSC22D4;;chr3:25469724..25469773,+!p1@RARB!0.56!4.19!RARB;;chr2:46602901..46602926,+!p7@EPAS1!0.56!3.78!EPAS1;;chr5:92919100..92919135,+!p3@NR2F1!0.56!3.36!NR2F1;;chr15:67357924..67357952,+!p2@SMAD3!0.55!20.97!SMAD3;;chr17:41623009..41623053,-!p4@ETV4!0.55!4.61!ETV4;;chr2:85980951..85981004,+!p1@ATOH8!0.55!4.61!ATOH8;;chr3:21792585..21792625,-!p2@ZNF385D!0.55!2.94!ZNF385D;;chr5:92918860..92918871,+!p10@NR2F1!0.55!2.94!NR2F1;;chr7:27153454..27153469,-!p2@HOXA3!0.55!2.52!HOXA3;;chr3:147111198..147111225,+!p4@ZIC1!0.55!2.52!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.55!2.52!ZNF385D;;chr4:57522513..57522548,-!p4@HOPX!0.55!2.52!HOPX;;chr1:47697539..47697573,-!p3@TAL1!0.55!2.52!TAL1;;chr16:30406423..30406447,+!p4@ZNF48!0.55!2.52!ZNF48;;chr16:86600458..86600461,+!p3@FOXC2!0.55!2.52!FOXC2;;chr15:67358163..67358192,+!p1@SMAD3!0.54!73.83!SMAD3;;chr11:47236489..47236567,+!p2@DDB2!0.54!43.21!DDB2;;chr17:38498594..38498661,+!p2@RARA!0.54!10.07!RARA;;chr16:1429627..1429662,-!p2@UNKL!0.54!8.81!UNKL;;chr19:56652686..56652701,+!p3@ZNF444!0.54!5.03!ZNF444;;chr19:19303794..19303805,+!p5@RFXANK!0.54!2.94!RFXANK;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.50!NFIB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.85!PPP1R13L;;chr18:51750888..51750920,-!p3@MBD2!0.53!21.81!MBD2;;chr20:48599506..48599526,+!p1@SNAI1!0.53!19.30!SNAI1;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.78!ZBTB16;;chr19:13136130..13136165,+!p6@NFIX!0.53!3.36!NFIX;;chr1:221052840..221052875,+!p4@HLX!0.53!2.94!HLX;;chr17:7590797..7590815,-!p1@TP53!0.52!130.04!TP53;;chr8:128748308..128748324,+!p2@MYC!0.52!83.06!MYC;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.08!MYBL2;;chr13:72441315..72441454,-!p1@DACH1!0.52!5.45!DACH1;;chr12:124873357..124873401,-!p1@NCOR2!0.51!33.56!NCOR2;;chr5:321810..321877,+!p1@AHRR!0.51!8.81!AHRR;;chr1:221052776..221052799,+!p1@HLX!0.51!4.61!HLX;;chr1:41827095..41827155,+!p1@FOXO6!0.51!3.36!FOXO6;;chr12:30681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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11264-116G4 | |id=FF:11264-116G4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000047 | ||
|is_obsolete= | |||
|library_id=CNhs12496 | |||
|library_id_phase_based=2:CNhs12496 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11264 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TGACCA.11264 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11264 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TGACCA.11264 | |||
|name=Endothelial Cells - Artery, donor1 | |name=Endothelial Cells - Artery, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12496,LSID916,release011,COMPLETED | |profile_hcage=CNhs12496,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA300-R10a | |rna_catalog_number=CA300-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116G4 | |rna_tube_id=116G4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.TGACCA | |||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.6912939943897e-214!GO:0005737;cytoplasm;5.26080791663156e-192!GO:0043226;organelle;8.98952475249535e-166!GO:0043229;intracellular organelle;1.63630433634605e-165!GO:0043231;intracellular membrane-bound organelle;7.00704463400749e-160!GO:0043227;membrane-bound organelle;1.53158762190928e-159!GO:0044444;cytoplasmic part;7.31673598805653e-140!GO:0044422;organelle part;4.01516500964264e-126!GO:0044446;intracellular organelle part;7.9211972946019e-125!GO:0032991;macromolecular complex;4.47022851318122e-90!GO:0005515;protein binding;5.49661377895258e-85!GO:0030529;ribonucleoprotein complex;1.98150042167353e-79!GO:0044238;primary metabolic process;3.36658372934576e-75!GO:0044237;cellular metabolic process;1.39204402781743e-74!GO:0043170;macromolecule metabolic process;5.12141505950055e-69!GO:0005739;mitochondrion;6.1500456467998e-67!GO:0043233;organelle lumen;3.91099706815888e-63!GO:0031974;membrane-enclosed lumen;3.91099706815888e-63!GO:0003723;RNA binding;3.3515960967976e-59!GO:0044428;nuclear part;1.17339564718189e-56!GO:0019538;protein metabolic process;1.34388622774246e-54!GO:0005634;nucleus;1.12447175429198e-51!GO:0005840;ribosome;2.12580735940505e-50!GO:0031090;organelle membrane;2.886756347987e-50!GO:0044260;cellular macromolecule metabolic process;4.47844848479617e-48!GO:0044267;cellular protein metabolic process;5.11320755319509e-48!GO:0006412;translation;3.66295245816244e-47!GO:0016043;cellular component organization and biogenesis;1.13978977162186e-46!GO:0044429;mitochondrial part;3.93634001090119e-45!GO:0043234;protein complex;4.44395601662319e-45!GO:0003735;structural constituent of ribosome;2.02285120706498e-44!GO:0005829;cytosol;1.8579024787526e-41!GO:0006396;RNA processing;1.02973584242866e-40!GO:0031967;organelle envelope;1.84336083553641e-39!GO:0031975;envelope;4.20913060749308e-39!GO:0015031;protein transport;3.59223015551196e-38!GO:0033279;ribosomal subunit;1.33503093015064e-37!GO:0009058;biosynthetic process;1.45945433027342e-37!GO:0009059;macromolecule biosynthetic process;1.49758789136703e-37!GO:0033036;macromolecule localization;1.94919566905909e-37!GO:0044249;cellular biosynthetic process;9.11227658215944e-37!GO:0031981;nuclear lumen;3.05028762985859e-36!GO:0045184;establishment of protein localization;5.01583168400553e-35!GO:0008104;protein localization;9.90214822584383e-35!GO:0043283;biopolymer metabolic process;1.19230187457503e-33!GO:0005740;mitochondrial envelope;1.12044503015102e-31!GO:0016071;mRNA metabolic process;4.79704725372891e-31!GO:0043228;non-membrane-bound organelle;1.90009021604993e-30!GO:0043232;intracellular non-membrane-bound organelle;1.90009021604993e-30!GO:0046907;intracellular transport;1.95718708177931e-30!GO:0006996;organelle organization and biogenesis;3.87822582416144e-30!GO:0031966;mitochondrial membrane;4.39540578745532e-30!GO:0008380;RNA splicing;3.54573086319007e-29!GO:0065003;macromolecular complex assembly;1.19755727152493e-28!GO:0010467;gene expression;1.45906406340366e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.69764016196096e-28!GO:0019866;organelle inner membrane;3.96500955987604e-28!GO:0006397;mRNA processing;9.47940880216128e-27!GO:0005743;mitochondrial inner membrane;2.0347327208437e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.5430555613375e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.11781792823368e-26!GO:0022607;cellular component assembly;5.55583777174991e-26!GO:0006886;intracellular protein transport;1.72732018195965e-25!GO:0044445;cytosolic part;2.8332028021696e-23!GO:0006119;oxidative phosphorylation;3.20228166453694e-22!GO:0005654;nucleoplasm;9.07630135208379e-22!GO:0005681;spliceosome;1.57807113332226e-21!GO:0000166;nucleotide binding;2.54332280643083e-21!GO:0044455;mitochondrial membrane part;1.64323900008546e-20!GO:0015934;large ribosomal subunit;2.80656722923924e-20!GO:0016462;pyrophosphatase activity;3.18868719497464e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.89331955776973e-20!GO:0006259;DNA metabolic process;4.86180841416159e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;5.1919518484555e-20!GO:0051649;establishment of cellular localization;8.38085496196366e-20!GO:0017111;nucleoside-triphosphatase activity;9.64541072180083e-20!GO:0051641;cellular localization;1.21527774896663e-19!GO:0012505;endomembrane system;3.48820663718894e-19!GO:0005794;Golgi apparatus;4.37358343783318e-19!GO:0005783;endoplasmic reticulum;1.7094123792105e-18!GO:0006457;protein folding;2.00891712515704e-18!GO:0015935;small ribosomal subunit;2.31903181312412e-18!GO:0044451;nucleoplasm part;2.57942890171902e-18!GO:0008134;transcription factor binding;2.7670843592078e-17!GO:0031980;mitochondrial lumen;3.72920136886053e-17!GO:0005759;mitochondrial matrix;3.72920136886053e-17!GO:0005746;mitochondrial respiratory chain;1.06943134049187e-16!GO:0016874;ligase activity;5.53049090875345e-16!GO:0005730;nucleolus;6.82048521663249e-16!GO:0048770;pigment granule;7.05333485148354e-16!GO:0042470;melanosome;7.05333485148354e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.96395680283817e-16!GO:0000502;proteasome complex (sensu Eukaryota);9.29741052841674e-16!GO:0007049;cell cycle;1.56459829928971e-15!GO:0043412;biopolymer modification;2.0860441802005e-15!GO:0051186;cofactor metabolic process;2.10745337270825e-15!GO:0017076;purine nucleotide binding;2.37007214571805e-15!GO:0032553;ribonucleotide binding;2.80719281425447e-15!GO:0032555;purine ribonucleotide binding;2.80719281425447e-15!GO:0044265;cellular macromolecule catabolic process;6.63892795840526e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.56794799473147e-15!GO:0003954;NADH dehydrogenase activity;7.56794799473147e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.56794799473147e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.27826473726799e-14!GO:0022618;protein-RNA complex assembly;1.3016956805367e-14!GO:0006512;ubiquitin cycle;1.39878244670974e-14!GO:0016192;vesicle-mediated transport;1.93011713335632e-14!GO:0044432;endoplasmic reticulum part;1.99180467378615e-14!GO:0006605;protein targeting;2.87912849094043e-14!GO:0043285;biopolymer catabolic process;3.58356578167412e-14!GO:0006464;protein modification process;3.59495725855151e-14!GO:0009057;macromolecule catabolic process;5.66769851980039e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.04926131053714e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.63664278946898e-14!GO:0005761;mitochondrial ribosome;3.3224150038887e-13!GO:0000313;organellar ribosome;3.3224150038887e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.26043122927718e-13!GO:0042773;ATP synthesis coupled electron transport;4.26043122927718e-13!GO:0012501;programmed cell death;5.41465948042807e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.8280713043597e-13!GO:0045271;respiratory chain complex I;6.8280713043597e-13!GO:0005747;mitochondrial respiratory chain complex I;6.8280713043597e-13!GO:0006915;apoptosis;7.96779268895737e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.07966901367359e-12!GO:0008135;translation factor activity, nucleic acid binding;1.31909564258379e-12!GO:0019941;modification-dependent protein catabolic process;1.55270639768486e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.55270639768486e-12!GO:0051082;unfolded protein binding;1.55270639768486e-12!GO:0044248;cellular catabolic process;1.61195819443456e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.94226903817282e-12!GO:0044257;cellular protein catabolic process;2.04207175948998e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.58761352205836e-12!GO:0022402;cell cycle process;4.22848436034116e-12!GO:0042254;ribosome biogenesis and assembly;4.60696199529166e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;4.60696199529166e-12!GO:0000375;RNA splicing, via transesterification reactions;4.60696199529166e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.60696199529166e-12!GO:0032559;adenyl ribonucleotide binding;7.1330724745391e-12!GO:0030554;adenyl nucleotide binding;8.06707693642657e-12!GO:0030163;protein catabolic process;8.21585597416073e-12!GO:0005524;ATP binding;8.65348561657587e-12!GO:0048193;Golgi vesicle transport;1.00434556011652e-11!GO:0003712;transcription cofactor activity;1.25505494701876e-11!GO:0009055;electron carrier activity;1.50096804397096e-11!GO:0043687;post-translational protein modification;1.54163167614493e-11!GO:0008219;cell death;1.6246698927311e-11!GO:0016265;death;1.6246698927311e-11!GO:0006732;coenzyme metabolic process;2.10796152269207e-11!GO:0048523;negative regulation of cellular process;3.59631261387071e-11!GO:0003676;nucleic acid binding;9.06646268779728e-11!GO:0005793;ER-Golgi intermediate compartment;1.06323432146054e-10!GO:0000278;mitotic cell cycle;1.80279580901731e-10!GO:0006974;response to DNA damage stimulus;2.73169438749768e-10!GO:0042623;ATPase activity, coupled;2.90940248297483e-10!GO:0016887;ATPase activity;3.26628380979565e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.41003046412674e-10!GO:0009259;ribonucleotide metabolic process;5.39973800344982e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.73683230135787e-10!GO:0003743;translation initiation factor activity;7.9631803149195e-10!GO:0048519;negative regulation of biological process;8.24399780858728e-10!GO:0006163;purine nucleotide metabolic process;1.11365416181523e-09!GO:0006461;protein complex assembly;1.42569054313925e-09!GO:0016604;nuclear body;1.42657510893074e-09!GO:0009150;purine ribonucleotide metabolic process;1.48854649506383e-09!GO:0005789;endoplasmic reticulum membrane;1.62469485965985e-09!GO:0008639;small protein conjugating enzyme activity;1.83712412215624e-09!GO:0005635;nuclear envelope;3.28057687588064e-09!GO:0016070;RNA metabolic process;3.2961875822713e-09!GO:0004842;ubiquitin-protein ligase activity;3.585084278597e-09!GO:0006913;nucleocytoplasmic transport;3.6517063261861e-09!GO:0051726;regulation of cell cycle;3.90160629028997e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.94761786090224e-09!GO:0006399;tRNA metabolic process;5.0794140599807e-09!GO:0000074;regulation of progression through cell cycle;5.80082358332673e-09!GO:0019787;small conjugating protein ligase activity;6.20255119695494e-09!GO:0006164;purine nucleotide biosynthetic process;6.37779812085056e-09!GO:0009199;ribonucleoside triphosphate metabolic process;6.50519116787222e-09!GO:0009260;ribonucleotide biosynthetic process;7.35794117540505e-09!GO:0006413;translational initiation;7.59416364886122e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.00184115376682e-09!GO:0009152;purine ribonucleotide biosynthetic process;8.15426959862383e-09!GO:0051169;nuclear transport;9.19185861870693e-09!GO:0009141;nucleoside triphosphate metabolic process;1.06188180292927e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.09971811356221e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.20206405760581e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.20206405760581e-08!GO:0044453;nuclear membrane part;1.22921081911437e-08!GO:0051276;chromosome organization and biogenesis;1.35987252106794e-08!GO:0006446;regulation of translational initiation;1.48869883139118e-08!GO:0006366;transcription from RNA polymerase II promoter;1.86935545343311e-08!GO:0031965;nuclear membrane;1.87815629421837e-08!GO:0015986;ATP synthesis coupled proton transport;1.89448696808585e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.89448696808585e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.64564825932084e-08!GO:0044431;Golgi apparatus part;2.75194915218519e-08!GO:0006364;rRNA processing;2.86740898637078e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.86740898637078e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.86740898637078e-08!GO:0006260;DNA replication;3.23412130503411e-08!GO:0006323;DNA packaging;3.80130597712086e-08!GO:0051188;cofactor biosynthetic process;3.8777519334565e-08!GO:0003924;GTPase activity;4.09096249307302e-08!GO:0006281;DNA repair;4.5196941996283e-08!GO:0009060;aerobic respiration;5.04559170128004e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.4626656149951e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.4626656149951e-08!GO:0009719;response to endogenous stimulus;5.50058133319644e-08!GO:0016072;rRNA metabolic process;5.81843413409233e-08!GO:0046034;ATP metabolic process;6.19933098962817e-08!GO:0016023;cytoplasmic membrane-bound vesicle;6.67955978555831e-08!GO:0016881;acid-amino acid ligase activity;6.72548255692608e-08!GO:0006793;phosphorus metabolic process;6.78497471317184e-08!GO:0006796;phosphate metabolic process;6.78497471317184e-08!GO:0043067;regulation of programmed cell death;7.19844429467251e-08!GO:0042981;regulation of apoptosis;7.48518196526066e-08!GO:0051246;regulation of protein metabolic process;7.58152526396019e-08!GO:0005694;chromosome;8.01507488330708e-08!GO:0008565;protein transporter activity;8.0524746865431e-08!GO:0017038;protein import;8.11529322651848e-08!GO:0019829;cation-transporting ATPase activity;8.41626945580555e-08!GO:0031988;membrane-bound vesicle;9.0244285513776e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.0802102908296e-07!GO:0009117;nucleotide metabolic process;1.12298360312593e-07!GO:0005788;endoplasmic reticulum lumen;1.16100367408493e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.56660473032613e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.56660473032613e-07!GO:0050794;regulation of cellular process;1.65481582231643e-07!GO:0005768;endosome;2.25225776759914e-07!GO:0043069;negative regulation of programmed cell death;2.25225776759914e-07!GO:0009056;catabolic process;2.27544999368786e-07!GO:0006754;ATP biosynthetic process;2.36150536267704e-07!GO:0006753;nucleoside phosphate metabolic process;2.36150536267704e-07!GO:0005773;vacuole;2.84304007547427e-07!GO:0006916;anti-apoptosis;2.98637320651218e-07!GO:0045333;cellular respiration;3.11798436600136e-07!GO:0016310;phosphorylation;3.17981632026934e-07!GO:0044427;chromosomal part;3.34274954019351e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.39562518461386e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.51742996877562e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.51742996877562e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.51742996877562e-07!GO:0043066;negative regulation of apoptosis;4.07844749237729e-07!GO:0030036;actin cytoskeleton organization and biogenesis;4.25367435740562e-07!GO:0065002;intracellular protein transport across a membrane;4.81182343536177e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.84452652305213e-07!GO:0016607;nuclear speck;5.22602624880573e-07!GO:0000785;chromatin;6.22546559138084e-07!GO:0016491;oxidoreductase activity;7.23048949989356e-07!GO:0007005;mitochondrion organization and biogenesis;7.51119451082155e-07!GO:0043038;amino acid activation;8.06673963681435e-07!GO:0006418;tRNA aminoacylation for protein translation;8.06673963681435e-07!GO:0043039;tRNA aminoacylation;8.06673963681435e-07!GO:0016787;hydrolase activity;8.2158262630442e-07!GO:0006888;ER to Golgi vesicle-mediated transport;9.24686611937109e-07!GO:0005643;nuclear pore;9.53340722403168e-07!GO:0006333;chromatin assembly or disassembly;9.81126264508269e-07!GO:0000139;Golgi membrane;1.00292275883668e-06!GO:0031252;leading edge;1.08274878852232e-06!GO:0016740;transferase activity;1.11260255930736e-06!GO:0065004;protein-DNA complex assembly;1.15833082134733e-06!GO:0051301;cell division;1.28721783098823e-06!GO:0000087;M phase of mitotic cell cycle;1.41564660489431e-06!GO:0008026;ATP-dependent helicase activity;1.49848267518408e-06!GO:0030120;vesicle coat;1.5456878100625e-06!GO:0030662;coated vesicle membrane;1.5456878100625e-06!GO:0007067;mitosis;1.55666029469427e-06!GO:0031410;cytoplasmic vesicle;2.12539645545161e-06!GO:0031982;vesicle;2.12539645545161e-06!GO:0005525;GTP binding;2.49369498967028e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.57818792660374e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.68697716092077e-06!GO:0048475;coated membrane;2.71692842518475e-06!GO:0030117;membrane coat;2.71692842518475e-06!GO:0006099;tricarboxylic acid cycle;2.92874753038848e-06!GO:0046356;acetyl-CoA catabolic process;2.92874753038848e-06!GO:0030029;actin filament-based process;3.16902618856978e-06!GO:0045259;proton-transporting ATP synthase complex;3.16902618856978e-06!GO:0004386;helicase activity;3.30306314664767e-06!GO:0000323;lytic vacuole;3.52650805899734e-06!GO:0005764;lysosome;3.52650805899734e-06!GO:0009108;coenzyme biosynthetic process;3.64155914106093e-06!GO:0032446;protein modification by small protein conjugation;3.74138023150523e-06!GO:0045786;negative regulation of progression through cell cycle;3.82143345701322e-06!GO:0016564;transcription repressor activity;4.39269328048211e-06!GO:0022403;cell cycle phase;4.39518937699606e-06!GO:0016567;protein ubiquitination;4.79880478797132e-06!GO:0046930;pore complex;5.05980411148043e-06!GO:0051187;cofactor catabolic process;5.27587865891211e-06!GO:0016779;nucleotidyltransferase activity;6.68289561407699e-06!GO:0045454;cell redox homeostasis;6.84582994146682e-06!GO:0003714;transcription corepressor activity;8.12203280573441e-06!GO:0003713;transcription coactivator activity;9.23894908673753e-06!GO:0003697;single-stranded DNA binding;9.86403528667545e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.07521681143011e-05!GO:0006084;acetyl-CoA metabolic process;1.0858781699397e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.09561756382257e-05!GO:0044440;endosomal part;1.13771890482058e-05!GO:0010008;endosome membrane;1.13771890482058e-05!GO:0005770;late endosome;1.43435111544093e-05!GO:0000245;spliceosome assembly;1.64445187215592e-05!GO:0016044;membrane organization and biogenesis;1.67632482650295e-05!GO:0006091;generation of precursor metabolites and energy;1.78302526979769e-05!GO:0004298;threonine endopeptidase activity;1.79965241634889e-05!GO:0050657;nucleic acid transport;1.9564825405406e-05!GO:0051236;establishment of RNA localization;1.9564825405406e-05!GO:0050658;RNA transport;1.9564825405406e-05!GO:0005667;transcription factor complex;1.96778938377523e-05!GO:0048522;positive regulation of cellular process;2.00465638612518e-05!GO:0006752;group transfer coenzyme metabolic process;2.110448682368e-05!GO:0051170;nuclear import;2.3108677305301e-05!GO:0006403;RNA localization;2.38472095318667e-05!GO:0032561;guanyl ribonucleotide binding;2.38472095318667e-05!GO:0019001;guanyl nucleotide binding;2.38472095318667e-05!GO:0016563;transcription activator activity;2.54154827445042e-05!GO:0007010;cytoskeleton organization and biogenesis;2.54154827445042e-05!GO:0009109;coenzyme catabolic process;2.63930749392021e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.7147591217064e-05!GO:0019899;enzyme binding;2.8419633623892e-05!GO:0006334;nucleosome assembly;2.94989844775321e-05!GO:0015630;microtubule cytoskeleton;3.35624283735533e-05!GO:0003724;RNA helicase activity;3.51063927150949e-05!GO:0005769;early endosome;3.82099768231358e-05!GO:0000151;ubiquitin ligase complex;4.2470543567956e-05!GO:0016853;isomerase activity;4.60319409318735e-05!GO:0006606;protein import into nucleus;4.65802029678703e-05!GO:0031968;organelle outer membrane;4.77528495258869e-05!GO:0007264;small GTPase mediated signal transduction;4.98901172444853e-05!GO:0031497;chromatin assembly;5.01378974672434e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;5.25601365147657e-05!GO:0015399;primary active transmembrane transporter activity;5.25601365147657e-05!GO:0043566;structure-specific DNA binding;5.49756745675856e-05!GO:0005762;mitochondrial large ribosomal subunit;5.59471404624161e-05!GO:0000315;organellar large ribosomal subunit;5.59471404624161e-05!GO:0016568;chromatin modification;5.64176955496607e-05!GO:0019867;outer membrane;5.89446365198296e-05!GO:0007243;protein kinase cascade;6.37998925028943e-05!GO:0008654;phospholipid biosynthetic process;6.64373426643152e-05!GO:0050789;regulation of biological process;7.18503013898722e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.44197601362298e-05!GO:0030867;rough endoplasmic reticulum membrane;8.92012360955784e-05!GO:0043623;cellular protein complex assembly;9.0494645177655e-05!GO:0008092;cytoskeletal protein binding;9.16430727492755e-05!GO:0005741;mitochondrial outer membrane;0.000100315620213272!GO:0003899;DNA-directed RNA polymerase activity;0.000107934307112405!GO:0033116;ER-Golgi intermediate compartment membrane;0.000109979184333436!GO:0031324;negative regulation of cellular metabolic process;0.000114696577092625!GO:0065009;regulation of a molecular function;0.000122625671734403!GO:0008047;enzyme activator activity;0.000142197722227155!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000151805402551294!GO:0009165;nucleotide biosynthetic process;0.000168235355009364!GO:0006613;cotranslational protein targeting to membrane;0.000173317393420193!GO:0005798;Golgi-associated vesicle;0.000185416974234622!GO:0051427;hormone receptor binding;0.000189242426228177!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000205478087490565!GO:0009892;negative regulation of metabolic process;0.000212699067997857!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000217134446135492!GO:0044262;cellular carbohydrate metabolic process;0.000238696217309592!GO:0016859;cis-trans isomerase activity;0.000240955725210724!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00025946247850019!GO:0005048;signal sequence binding;0.000322995578149438!GO:0051028;mRNA transport;0.000322995578149438!GO:0043492;ATPase activity, coupled to movement of substances;0.000336102353326293!GO:0008186;RNA-dependent ATPase activity;0.000351599492849469!GO:0005905;coated pit;0.000357888627639204!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000392886425767851!GO:0035257;nuclear hormone receptor binding;0.000392886425767851!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000404021023175568!GO:0006414;translational elongation;0.000417119538479428!GO:0042802;identical protein binding;0.000424317817109577!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000452330173326147!GO:0005885;Arp2/3 protein complex;0.000491430769232645!GO:0051087;chaperone binding;0.000497802386861171!GO:0000279;M phase;0.000514563442429562!GO:0051329;interphase of mitotic cell cycle;0.000514563442429562!GO:0006950;response to stress;0.000539376515533227!GO:0008632;apoptotic program;0.000581189130673627!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000589725226274045!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000602758397998025!GO:0051325;interphase;0.000636278112168101!GO:0043021;ribonucleoprotein binding;0.000639316214109111!GO:0015980;energy derivation by oxidation of organic compounds;0.000692407014770308!GO:0000314;organellar small ribosomal subunit;0.00073546593134765!GO:0005763;mitochondrial small ribosomal subunit;0.00073546593134765!GO:0008361;regulation of cell size;0.000760637658427458!GO:0005096;GTPase activator activity;0.000788475317313917!GO:0019843;rRNA binding;0.000794393365412472!GO:0005813;centrosome;0.000839612827125735!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000863450251833825!GO:0016049;cell growth;0.000875871658128852!GO:0004004;ATP-dependent RNA helicase activity;0.000913542885319644!GO:0048471;perinuclear region of cytoplasm;0.00091836532014142!GO:0043681;protein import into mitochondrion;0.000921575839445872!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00110477238595856!GO:0001558;regulation of cell growth;0.00113825218470754!GO:0051920;peroxiredoxin activity;0.00130896576482773!GO:0051789;response to protein stimulus;0.00152474959662737!GO:0006986;response to unfolded protein;0.00152474959662737!GO:0006818;hydrogen transport;0.00161343652330457!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00165358024845694!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00165358024845694!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00165358024845694!GO:0015992;proton transport;0.00167337574213104!GO:0006626;protein targeting to mitochondrion;0.00170895553399496!GO:0006509;membrane protein ectodomain proteolysis;0.00177596110068969!GO:0033619;membrane protein proteolysis;0.00177596110068969!GO:0046474;glycerophospholipid biosynthetic process;0.00182025544429956!GO:0008033;tRNA processing;0.00183154117912239!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00183154117912239!GO:0006897;endocytosis;0.00193294576802443!GO:0010324;membrane invagination;0.00193294576802443!GO:0048518;positive regulation of biological process;0.00194373258371166!GO:0007265;Ras protein signal transduction;0.00195594624672102!GO:0005815;microtubule organizing center;0.00199904158813825!GO:0007242;intracellular signaling cascade;0.00205870404220067!GO:0006612;protein targeting to membrane;0.00208545887035742!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00237325399508017!GO:0030027;lamellipodium;0.00252363136064899!GO:0007006;mitochondrial membrane organization and biogenesis;0.00253286013919473!GO:0030659;cytoplasmic vesicle membrane;0.00264113555415174!GO:0031072;heat shock protein binding;0.00290546251309552!GO:0051252;regulation of RNA metabolic process;0.00296084093988942!GO:0030880;RNA polymerase complex;0.00303619226642999!GO:0005774;vacuolar membrane;0.00303619226642999!GO:0005791;rough endoplasmic reticulum;0.00303619226642999!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0033128721870507!GO:0065007;biological regulation;0.00336516007436393!GO:0051168;nuclear export;0.00339729398164373!GO:0030133;transport vesicle;0.00341585857681379!GO:0006839;mitochondrial transport;0.00341585857681379!GO:0017166;vinculin binding;0.00341585857681379!GO:0043488;regulation of mRNA stability;0.00341585857681379!GO:0043487;regulation of RNA stability;0.00341585857681379!GO:0000786;nucleosome;0.00362729230419046!GO:0044452;nucleolar part;0.00374734351443502!GO:0006778;porphyrin metabolic process;0.00383691419925319!GO:0033013;tetrapyrrole metabolic process;0.00383691419925319!GO:0046489;phosphoinositide biosynthetic process;0.00411594983301322!GO:0006401;RNA catabolic process;0.00417083938360279!GO:0007162;negative regulation of cell adhesion;0.00422240216917484!GO:0008139;nuclear localization sequence binding;0.00433097748762697!GO:0016363;nuclear matrix;0.00440532891050203!GO:0006402;mRNA catabolic process;0.00440532891050203!GO:0033673;negative regulation of kinase activity;0.00440532891050203!GO:0006469;negative regulation of protein kinase activity;0.00440532891050203!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00445207912829508!GO:0008154;actin polymerization and/or depolymerization;0.00445207912829508!GO:0045941;positive regulation of transcription;0.00456763483991331!GO:0051540;metal cluster binding;0.00473104522614934!GO:0051536;iron-sulfur cluster binding;0.00473104522614934!GO:0006261;DNA-dependent DNA replication;0.00473104522614934!GO:0030658;transport vesicle membrane;0.00474520483874305!GO:0030041;actin filament polymerization;0.00490326687250782!GO:0006650;glycerophospholipid metabolic process;0.00495477216946177!GO:0016481;negative regulation of transcription;0.00497061007625023!GO:0030132;clathrin coat of coated pit;0.0049956894937462!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0049956894937462!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0049956894937462!GO:0003779;actin binding;0.00517086610995236!GO:0009967;positive regulation of signal transduction;0.00528616677745781!GO:0048468;cell development;0.00561278163141517!GO:0042168;heme metabolic process;0.00567429479637533!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00573097702459878!GO:0003729;mRNA binding;0.00582153725375566!GO:0030663;COPI coated vesicle membrane;0.00582153725375566!GO:0030126;COPI vesicle coat;0.00582153725375566!GO:0051348;negative regulation of transferase activity;0.00582153725375566!GO:0043284;biopolymer biosynthetic process;0.00586374681172616!GO:0051101;regulation of DNA binding;0.00592196910376135!GO:0005684;U2-dependent spliceosome;0.00623757859075045!GO:0048487;beta-tubulin binding;0.0063310867401755!GO:0046467;membrane lipid biosynthetic process;0.00633895153407721!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00636294897296108!GO:0000428;DNA-directed RNA polymerase complex;0.00636294897296108!GO:0030176;integral to endoplasmic reticulum membrane;0.00637435273877736!GO:0051270;regulation of cell motility;0.00646169406495807!GO:0007040;lysosome organization and biogenesis;0.00655820091375772!GO:0000059;protein import into nucleus, docking;0.00662534105299211!GO:0030118;clathrin coat;0.00664454470595962!GO:0040008;regulation of growth;0.00664454470595962!GO:0050790;regulation of catalytic activity;0.00687317945840042!GO:0046483;heterocycle metabolic process;0.00687422721308792!GO:0001568;blood vessel development;0.00687680921224112!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00700264430389319!GO:0022890;inorganic cation transmembrane transporter activity;0.0070183853613324!GO:0045893;positive regulation of transcription, DNA-dependent;0.00703285276612794!GO:0001726;ruffle;0.00705457567667657!GO:0044437;vacuolar part;0.00707827289466259!GO:0040011;locomotion;0.00721304653939864!GO:0006383;transcription from RNA polymerase III promoter;0.00730503796998475!GO:0006289;nucleotide-excision repair;0.00730503796998475!GO:0006118;electron transport;0.00739800414266293!GO:0043086;negative regulation of catalytic activity;0.00762342576180737!GO:0030134;ER to Golgi transport vesicle;0.00773076063268603!GO:0048660;regulation of smooth muscle cell proliferation;0.007749692297004!GO:0016281;eukaryotic translation initiation factor 4F complex;0.007749692297004!GO:0008243;plasminogen activator activity;0.00807536509092559!GO:0006740;NADPH regeneration;0.00839308500169926!GO:0006098;pentose-phosphate shunt;0.00839308500169926!GO:0030308;negative regulation of cell growth;0.0086103143951603!GO:0045792;negative regulation of cell size;0.00866257461745651!GO:0007266;Rho protein signal transduction;0.00882873958139789!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00901479910250127!GO:0006497;protein amino acid lipidation;0.00903640980235756!GO:0044433;cytoplasmic vesicle part;0.0091747929375874!GO:0030137;COPI-coated vesicle;0.00925000787790672!GO:0016197;endosome transport;0.0093106713395578!GO:0005765;lysosomal membrane;0.00948863001599878!GO:0015036;disulfide oxidoreductase activity;0.009564758625559!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00959056396138221!GO:0015002;heme-copper terminal oxidase activity;0.00959056396138221!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00959056396138221!GO:0004129;cytochrome-c oxidase activity;0.00959056396138221!GO:0007050;cell cycle arrest;0.00980727076178045!GO:0022408;negative regulation of cell-cell adhesion;0.0099730504805857!GO:0030127;COPII vesicle coat;0.0101104972500454!GO:0012507;ER to Golgi transport vesicle membrane;0.0101104972500454!GO:0040012;regulation of locomotion;0.0102023865572873!GO:0031902;late endosome membrane;0.0102260507131516!GO:0050662;coenzyme binding;0.0102854689791656!GO:0001944;vasculature development;0.0107172853522973!GO:0006595;polyamine metabolic process;0.0107172853522973!GO:0005819;spindle;0.0109615931620136!GO:0005083;small GTPase regulator activity;0.0110970754568775!GO:0030660;Golgi-associated vesicle membrane;0.0113137938623338!GO:0051098;regulation of binding;0.0114753682628099!GO:0003756;protein disulfide isomerase activity;0.0116703203213195!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0116703203213195!GO:0003711;transcription elongation regulator activity;0.0123785978872693!GO:0005092;GDP-dissociation inhibitor activity;0.0124140662444484!GO:0009966;regulation of signal transduction;0.0125737944037618!GO:0030384;phosphoinositide metabolic process;0.0129346871899764!GO:0001953;negative regulation of cell-matrix adhesion;0.0131140477928804!GO:0007033;vacuole organization and biogenesis;0.0134456639774213!GO:0003684;damaged DNA binding;0.0135555302215774!GO:0008637;apoptotic mitochondrial changes;0.0137491973895648!GO:0006352;transcription initiation;0.0137491973895648!GO:0030695;GTPase regulator activity;0.0141319791994373!GO:0035258;steroid hormone receptor binding;0.0141319791994373!GO:0048500;signal recognition particle;0.0142019146792726!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0144065682575925!GO:0045926;negative regulation of growth;0.0144986050236589!GO:0005637;nuclear inner membrane;0.014652795813418!GO:0005862;muscle thin filament tropomyosin;0.0149812674703499!GO:0006891;intra-Golgi vesicle-mediated transport;0.0150309017170635!GO:0043022;ribosome binding;0.0153071135461556!GO:0000049;tRNA binding;0.0159249740857481!GO:0004177;aminopeptidase activity;0.0162258204936669!GO:0022415;viral reproductive process;0.0164270492527386!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0164270492527386!GO:0005869;dynactin complex;0.0169055071086008!GO:0008180;signalosome;0.0169055071086008!GO:0006779;porphyrin biosynthetic process;0.0169055071086008!GO:0033014;tetrapyrrole biosynthetic process;0.0169055071086008!GO:0000082;G1/S transition of mitotic cell cycle;0.0173998803306567!GO:0005832;chaperonin-containing T-complex;0.0174731973095493!GO:0030032;lamellipodium biogenesis;0.0174731973095493!GO:0051128;regulation of cellular component organization and biogenesis;0.0176704548604687!GO:0030521;androgen receptor signaling pathway;0.0181554630580388!GO:0005874;microtubule;0.0196392727650463!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0199336840561386!GO:0016301;kinase activity;0.0206478380078914!GO:0015631;tubulin binding;0.0207147969526492!GO:0006979;response to oxidative stress;0.0207147969526492!GO:0012506;vesicle membrane;0.0207147969526492!GO:0006643;membrane lipid metabolic process;0.0209504176329961!GO:0030833;regulation of actin filament polymerization;0.0220079321349244!GO:0030145;manganese ion binding;0.0222558131399449!GO:0048659;smooth muscle cell proliferation;0.0222830258496151!GO:0008250;oligosaccharyl transferase complex;0.0227248786146932!GO:0004674;protein serine/threonine kinase activity;0.0229584733754293!GO:0045045;secretory pathway;0.0231453172677533!GO:0031301;integral to organelle membrane;0.0231453172677533!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0232964473131386!GO:0005099;Ras GTPase activator activity;0.0234630668632962!GO:0030031;cell projection biogenesis;0.0237070685782506!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0237995663375705!GO:0031272;regulation of pseudopodium formation;0.0238183499982712!GO:0031269;pseudopodium formation;0.0238183499982712!GO:0031344;regulation of cell projection organization and biogenesis;0.0238183499982712!GO:0031268;pseudopodium organization and biogenesis;0.0238183499982712!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0238183499982712!GO:0031274;positive regulation of pseudopodium formation;0.0238183499982712!GO:0016272;prefoldin complex;0.0238721883662213!GO:0042158;lipoprotein biosynthetic process;0.0238721883662213!GO:0030334;regulation of cell migration;0.0238721883662213!GO:0004518;nuclease activity;0.0240950199476438!GO:0008312;7S RNA binding;0.0244787740490763!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0244798784548255!GO:0000209;protein polyubiquitination;0.0245586928984451!GO:0035035;histone acetyltransferase binding;0.0247074831225564!GO:0007051;spindle organization and biogenesis;0.0248257241490566!GO:0051287;NAD binding;0.0251203410947118!GO:0031901;early endosome membrane;0.0251203410947118!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0251224241959993!GO:0030119;AP-type membrane coat adaptor complex;0.0251224241959993!GO:0006783;heme biosynthetic process;0.0251224241959993!GO:0006516;glycoprotein catabolic process;0.0251224241959993!GO:0005657;replication fork;0.0256414270144632!GO:0047485;protein N-terminus binding;0.0257006437153212!GO:0051539;4 iron, 4 sulfur cluster binding;0.0258000780963004!GO:0031529;ruffle organization and biogenesis;0.0259033690503093!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0264952143915276!GO:0003746;translation elongation factor activity;0.0268129244880224!GO:0008538;proteasome activator activity;0.0269144192130574!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0270932948750371!GO:0006807;nitrogen compound metabolic process;0.0275826786717546!GO:0030913;paranodal junction assembly;0.0275826786717546!GO:0032288;myelin formation;0.0275826786717546!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0279366409978149!GO:0033043;regulation of organelle organization and biogenesis;0.0279366409978149!GO:0006611;protein export from nucleus;0.0279593173457887!GO:0003682;chromatin binding;0.0281367941570765!GO:0043433;negative regulation of transcription factor activity;0.0283678605949732!GO:0046822;regulation of nucleocytoplasmic transport;0.0284555318710917!GO:0045879;negative regulation of smoothened signaling pathway;0.0285153833471198!GO:0006506;GPI anchor biosynthetic process;0.0285625633267444!GO:0019904;protein domain specific binding;0.0293433314111031!GO:0007044;cell-substrate junction assembly;0.0295098881806396!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0298629074303579!GO:0045047;protein targeting to ER;0.0298629074303579!GO:0032507;maintenance of cellular protein localization;0.030476954240221!GO:0043065;positive regulation of apoptosis;0.0310001875167246!GO:0031418;L-ascorbic acid binding;0.0313535990659283!GO:0005100;Rho GTPase activator activity;0.0314617362442537!GO:0006790;sulfur metabolic process;0.0318916986536788!GO:0007021;tubulin folding;0.0324556348687207!GO:0006505;GPI anchor metabolic process;0.0324556348687207!GO:0006417;regulation of translation;0.0325361602019469!GO:0046519;sphingoid metabolic process;0.0328394947157407!GO:0046426;negative regulation of JAK-STAT cascade;0.0328630076988795!GO:0043068;positive regulation of programmed cell death;0.0328978073711976!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0329445386872143!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0337313689855326!GO:0051059;NF-kappaB binding;0.0337313689855326!GO:0006458;'de novo' protein folding;0.0346107243122611!GO:0051084;'de novo' posttranslational protein folding;0.0346107243122611!GO:0030131;clathrin adaptor complex;0.034706066411503!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0356430224410758!GO:0006405;RNA export from nucleus;0.036004307045208!GO:0007034;vacuolar transport;0.0362245104319306!GO:0003690;double-stranded DNA binding;0.037495282239167!GO:0005938;cell cortex;0.0376112963168871!GO:0050178;phenylpyruvate tautomerase activity;0.0383498288009354!GO:0006739;NADP metabolic process;0.0393166315384191!GO:0030125;clathrin vesicle coat;0.0393166315384191!GO:0030665;clathrin coated vesicle membrane;0.0393166315384191!GO:0008094;DNA-dependent ATPase activity;0.0394934437168648!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0396879977070718!GO:0042987;amyloid precursor protein catabolic process;0.0397440026384411!GO:0001666;response to hypoxia;0.0398491464866506!GO:0048514;blood vessel morphogenesis;0.0399778659299252!GO:0018196;peptidyl-asparagine modification;0.0403734011878111!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0403734011878111!GO:0000096;sulfur amino acid metabolic process;0.0406812781999806!GO:0030518;steroid hormone receptor signaling pathway;0.0414020241890397!GO:0045185;maintenance of protein localization;0.0416355348807406!GO:0004576;oligosaccharyl transferase activity;0.041649444552713!GO:0045334;clathrin-coated endocytic vesicle;0.041920593397781!GO:0001872;zymosan binding;0.0420427665417969!GO:0001878;response to yeast;0.0420427665417969!GO:0000287;magnesium ion binding;0.0422603108616751!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0428974058822681!GO:0006082;organic acid metabolic process;0.042963003727024!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0437491141738358!GO:0010257;NADH dehydrogenase complex assembly;0.0437491141738358!GO:0033108;mitochondrial respiratory chain complex assembly;0.0437491141738358!GO:0043407;negative regulation of MAP kinase activity;0.0437491141738358!GO:0045936;negative regulation of phosphate metabolic process;0.0438667660841565!GO:0032984;macromolecular complex disassembly;0.0441307221499544!GO:0001952;regulation of cell-matrix adhesion;0.044715462802436!GO:0030911;TPR domain binding;0.0447206856318162!GO:0000075;cell cycle checkpoint;0.0450243814272695!GO:0032508;DNA duplex unwinding;0.0454494169644974!GO:0032392;DNA geometric change;0.0454494169644974!GO:0008484;sulfuric ester hydrolase activity;0.0456315455078225!GO:0031371;ubiquitin conjugating enzyme complex;0.0458667000516316!GO:0000178;exosome (RNase complex);0.0459001163821634!GO:0004680;casein kinase activity;0.0461545361350905!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0464144958721231!GO:0035267;NuA4 histone acetyltransferase complex;0.0468643802468201!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0469289615416252!GO:0008283;cell proliferation;0.0470644571666472!GO:0030508;thiol-disulfide exchange intermediate activity;0.0470644571666472!GO:0043189;H4/H2A histone acetyltransferase complex;0.0473221731406418!GO:0006302;double-strand break repair;0.0476304507790838!GO:0019752;carboxylic acid metabolic process;0.0491918138953356!GO:0006007;glucose catabolic process;0.0492174065585504!GO:0000339;RNA cap binding;0.0493041807517936!GO:0009303;rRNA transcription;0.0493589044965925!GO:0007346;regulation of progression through mitotic cell cycle;0.0493701564624222!GO:0031625;ubiquitin protein ligase binding;0.0493701564624222!GO:0016251;general RNA polymerase II transcription factor activity;0.0495667824840668!GO:0006672;ceramide metabolic process;0.0495667824840668 | |||
|sample_id=11264 | |sample_id=11264 | ||
|sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | |sample_note=Originally library704 tailing failed, these samples are now being remade in Automation6 | ||
| Line 76: | Line 105: | ||
|sample_tissue=artery | |sample_tissue=artery | ||
|top_motifs=RXR{A,B,G}:1.88070414889;SOX{8,9,10}:1.48325306298;TLX1..3_NFIC{dimer}:1.28076373042;AR:1.21850874214;bHLH_family:1.13941020419;NFATC1..3:1.13176977334;IKZF1:0.907730964429;TP53:0.866932006866;HIC1:0.863941089482;TFAP2{A,C}:0.833466005924;XCPE1{core}:0.812295297335;ONECUT1,2:0.79993776284;LHX3,4:0.746875477811;TFAP4:0.742935678784;PAX1,9:0.697306727688;ZNF423:0.693964647828;HBP1_HMGB_SSRP1_UBTF:0.684413793112;ZNF148:0.66215895104;GTF2A1,2:0.656032326879;ARID5B:0.617362701134;GZF1:0.613953125979;FOX{I1,J2}:0.610409388246;ETS1,2:0.610088056029;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.578709238263;EBF1:0.575234219608;GATA6:0.570189032407;PAX6:0.566120782217;LEF1_TCF7_TCF7L1,2:0.554315737978;ZBTB6:0.553323408659;ESRRA:0.552973252968;NKX2-2,8:0.486280702217;PAX8:0.470855792796;HOX{A5,B5}:0.462201999625;UFEwm:0.438680241465;PAX5:0.437812520009;SOX17:0.431369573689;SP1:0.408104150089;TFAP2B:0.399076017299;REST:0.392949273912;SPIB:0.377370912266;NR3C1:0.363862357065;ELF1,2,4:0.357680558042;SPZ1:0.348940951831;MTE{core}:0.337736397081;SOX5:0.31420063976;STAT5{A,B}:0.292568698109;ADNP_IRX_SIX_ZHX:0.270354588957;BACH2:0.259557094548;NFE2:0.243338669753;NFE2L1:0.241312007779;POU3F1..4:0.239866764934;NR5A1,2:0.238794413576;PRDM1:0.230422548167;ALX1:0.218654499424;CRX:0.206267895496;HES1:0.198994318457;PPARG:0.196501574661;NANOG:0.190064085928;TEAD1:0.188926940142;TFDP1:0.172994829367;HAND1,2:0.16685404168;RREB1:0.159300058267;ZFP161:0.154348401466;SOX2:0.151946193238;TFCP2:0.149863520206;FOS_FOS{B,L1}_JUN{B,D}:0.148591932944;SMAD1..7,9:0.138761683965;GTF2I:0.12916371604;NKX3-2:0.110869844767;GATA4:0.109245842988;TLX2:0.107637608128;HNF4A_NR2F1,2:0.107218614752;IKZF2:0.084001847209;ZIC1..3:0.0799656513752;GCM1,2:0.07840410928;EN1,2:0.0644430518016;SRF:0.0631540951379;RORA:0.0513833849953;POU2F1..3:0.0261260807821;RXRA_VDR{dimer}:0.019317354226;NHLH1,2:-0.0040683184025;PATZ1:-0.0122659992161;KLF4:-0.0133980222562;GLI1..3:-0.025168915386;FOXL1:-0.0353492902385;SPI1:-0.0383266317824;MED-1{core}:-0.0418561188424;NFE2L2:-0.0537515653276;TBP:-0.0539231994193;ZNF238:-0.0628279059783;MTF1:-0.0743565604749;FOSL2:-0.0869304473916;ZNF143:-0.0908849856716;RBPJ:-0.0985467758926;HMGA1,2:-0.107752934443;EGR1..3:-0.114052591693;MAZ:-0.123110663156;FOXD3:-0.125309466393;NRF1:-0.154913870945;CDC5L:-0.164490011332;GFI1B:-0.167519926495;PITX1..3:-0.176183573347;GFI1:-0.192867427319;FOXA2:-0.198643671583;PBX1:-0.199413730349;STAT2,4,6:-0.202114858043;HNF1A:-0.210308881092;LMO2:-0.220358932428;MYOD1:-0.233639161274;FOXQ1:-0.23719901536;NFKB1_REL_RELA:-0.249978140055;MYB:-0.25028796435;E2F1..5:-0.256701711313;MZF1:-0.260768037022;EVI1:-0.263714858098;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.271220272934;FOXM1:-0.27145325671;HMX1:-0.295273564891;MEF2{A,B,C,D}:-0.329181689777;TAL1_TCF{3,4,12}:-0.330070846504;JUN:-0.364766834491;YY1:-0.370324833554;NANOG{mouse}:-0.378374591629;PRRX1,2:-0.388667891192;DMAP1_NCOR{1,2}_SMARC:-0.396019793319;ATF6:-0.411786013284;TEF:-0.413569602628;HLF:-0.419672752614;SNAI1..3:-0.420893850432;RUNX1..3:-0.420980279684;POU1F1:-0.428387584728;NFY{A,B,C}:-0.434853533345;MAFB:-0.436606037601;ESR1:-0.457635472913;RFX1:-0.482491100321;OCT4_SOX2{dimer}:-0.485838294244;IRF1,2:-0.508661814217;ATF2:-0.518883846339;PAX4:-0.535844412837;IRF7:-0.540686618305;NR1H4:-0.547211964487;FOX{D1,D2}:-0.567591555743;ZEB1:-0.584932268102;PAX2:-0.589149792006;CEBPA,B_DDIT3:-0.608930507085;FOX{F1,F2,J1}:-0.620487163888;PAX3,7:-0.648703784302;BREu{core}:-0.649889708858;TGIF1:-0.655285015756;SREBF1,2:-0.664066572709;HSF1,2:-0.675429901942;ALX4:-0.679324433524;CUX2:-0.712616987068;XBP1:-0.725097192238;ELK1,4_GABP{A,B1}:-0.728249944316;T:-0.746655621751;AIRE:-0.746911133019;EP300:-0.75494671599;NFIX:-0.761409430159;VSX1,2:-0.769142569524;NKX2-3_NKX2-5:-0.787974560189;ZBTB16:-0.798396432295;POU6F1:-0.802509368846;CDX1,2,4:-0.813729380899;NKX2-1,4:-0.819505360156;MYFfamily:-0.820686414945;NR6A1:-0.842910091575;TOPORS:-0.8654242038;FOXO1,3,4:-0.870548326254;POU5F1:-0.884121683392;HOX{A6,A7,B6,B7}:-0.913709432104;ZNF384:-0.926655158295;CREB1:-0.992362603486;NFIL3:-1.0083703822;TBX4,5:-1.0300566048;BPTF:-1.03609987284;HOXA9_MEIS1:-1.06100978981;ATF5_CREB3:-1.07822263128;FOXP3:-1.09625946764;FOXN1:-1.10660793184;ATF4:-1.13634898539;AHR_ARNT_ARNT2:-1.16089216394;HIF1A:-1.1708046916;FOXP1:-1.22972353527;HOX{A4,D4}:-1.24838324746;STAT1,3:-1.25266006764;MYBL2:-1.28688377727;RFX2..5_RFXANK_RFXAP:-1.35587201518;NKX3-1:-1.36426175634;DBP:-1.40940731027;PDX1:-1.4965760482;NKX6-1,2:-1.70404406949 | |top_motifs=RXR{A,B,G}:1.88070414889;SOX{8,9,10}:1.48325306298;TLX1..3_NFIC{dimer}:1.28076373042;AR:1.21850874214;bHLH_family:1.13941020419;NFATC1..3:1.13176977334;IKZF1:0.907730964429;TP53:0.866932006866;HIC1:0.863941089482;TFAP2{A,C}:0.833466005924;XCPE1{core}:0.812295297335;ONECUT1,2:0.79993776284;LHX3,4:0.746875477811;TFAP4:0.742935678784;PAX1,9:0.697306727688;ZNF423:0.693964647828;HBP1_HMGB_SSRP1_UBTF:0.684413793112;ZNF148:0.66215895104;GTF2A1,2:0.656032326879;ARID5B:0.617362701134;GZF1:0.613953125979;FOX{I1,J2}:0.610409388246;ETS1,2:0.610088056029;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.578709238263;EBF1:0.575234219608;GATA6:0.570189032407;PAX6:0.566120782217;LEF1_TCF7_TCF7L1,2:0.554315737978;ZBTB6:0.553323408659;ESRRA:0.552973252968;NKX2-2,8:0.486280702217;PAX8:0.470855792796;HOX{A5,B5}:0.462201999625;UFEwm:0.438680241465;PAX5:0.437812520009;SOX17:0.431369573689;SP1:0.408104150089;TFAP2B:0.399076017299;REST:0.392949273912;SPIB:0.377370912266;NR3C1:0.363862357065;ELF1,2,4:0.357680558042;SPZ1:0.348940951831;MTE{core}:0.337736397081;SOX5:0.31420063976;STAT5{A,B}:0.292568698109;ADNP_IRX_SIX_ZHX:0.270354588957;BACH2:0.259557094548;NFE2:0.243338669753;NFE2L1:0.241312007779;POU3F1..4:0.239866764934;NR5A1,2:0.238794413576;PRDM1:0.230422548167;ALX1:0.218654499424;CRX:0.206267895496;HES1:0.198994318457;PPARG:0.196501574661;NANOG:0.190064085928;TEAD1:0.188926940142;TFDP1:0.172994829367;HAND1,2:0.16685404168;RREB1:0.159300058267;ZFP161:0.154348401466;SOX2:0.151946193238;TFCP2:0.149863520206;FOS_FOS{B,L1}_JUN{B,D}:0.148591932944;SMAD1..7,9:0.138761683965;GTF2I:0.12916371604;NKX3-2:0.110869844767;GATA4:0.109245842988;TLX2:0.107637608128;HNF4A_NR2F1,2:0.107218614752;IKZF2:0.084001847209;ZIC1..3:0.0799656513752;GCM1,2:0.07840410928;EN1,2:0.0644430518016;SRF:0.0631540951379;RORA:0.0513833849953;POU2F1..3:0.0261260807821;RXRA_VDR{dimer}:0.019317354226;NHLH1,2:-0.0040683184025;PATZ1:-0.0122659992161;KLF4:-0.0133980222562;GLI1..3:-0.025168915386;FOXL1:-0.0353492902385;SPI1:-0.0383266317824;MED-1{core}:-0.0418561188424;NFE2L2:-0.0537515653276;TBP:-0.0539231994193;ZNF238:-0.0628279059783;MTF1:-0.0743565604749;FOSL2:-0.0869304473916;ZNF143:-0.0908849856716;RBPJ:-0.0985467758926;HMGA1,2:-0.107752934443;EGR1..3:-0.114052591693;MAZ:-0.123110663156;FOXD3:-0.125309466393;NRF1:-0.154913870945;CDC5L:-0.164490011332;GFI1B:-0.167519926495;PITX1..3:-0.176183573347;GFI1:-0.192867427319;FOXA2:-0.198643671583;PBX1:-0.199413730349;STAT2,4,6:-0.202114858043;HNF1A:-0.210308881092;LMO2:-0.220358932428;MYOD1:-0.233639161274;FOXQ1:-0.23719901536;NFKB1_REL_RELA:-0.249978140055;MYB:-0.25028796435;E2F1..5:-0.256701711313;MZF1:-0.260768037022;EVI1:-0.263714858098;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.271220272934;FOXM1:-0.27145325671;HMX1:-0.295273564891;MEF2{A,B,C,D}:-0.329181689777;TAL1_TCF{3,4,12}:-0.330070846504;JUN:-0.364766834491;YY1:-0.370324833554;NANOG{mouse}:-0.378374591629;PRRX1,2:-0.388667891192;DMAP1_NCOR{1,2}_SMARC:-0.396019793319;ATF6:-0.411786013284;TEF:-0.413569602628;HLF:-0.419672752614;SNAI1..3:-0.420893850432;RUNX1..3:-0.420980279684;POU1F1:-0.428387584728;NFY{A,B,C}:-0.434853533345;MAFB:-0.436606037601;ESR1:-0.457635472913;RFX1:-0.482491100321;OCT4_SOX2{dimer}:-0.485838294244;IRF1,2:-0.508661814217;ATF2:-0.518883846339;PAX4:-0.535844412837;IRF7:-0.540686618305;NR1H4:-0.547211964487;FOX{D1,D2}:-0.567591555743;ZEB1:-0.584932268102;PAX2:-0.589149792006;CEBPA,B_DDIT3:-0.608930507085;FOX{F1,F2,J1}:-0.620487163888;PAX3,7:-0.648703784302;BREu{core}:-0.649889708858;TGIF1:-0.655285015756;SREBF1,2:-0.664066572709;HSF1,2:-0.675429901942;ALX4:-0.679324433524;CUX2:-0.712616987068;XBP1:-0.725097192238;ELK1,4_GABP{A,B1}:-0.728249944316;T:-0.746655621751;AIRE:-0.746911133019;EP300:-0.75494671599;NFIX:-0.761409430159;VSX1,2:-0.769142569524;NKX2-3_NKX2-5:-0.787974560189;ZBTB16:-0.798396432295;POU6F1:-0.802509368846;CDX1,2,4:-0.813729380899;NKX2-1,4:-0.819505360156;MYFfamily:-0.820686414945;NR6A1:-0.842910091575;TOPORS:-0.8654242038;FOXO1,3,4:-0.870548326254;POU5F1:-0.884121683392;HOX{A6,A7,B6,B7}:-0.913709432104;ZNF384:-0.926655158295;CREB1:-0.992362603486;NFIL3:-1.0083703822;TBX4,5:-1.0300566048;BPTF:-1.03609987284;HOXA9_MEIS1:-1.06100978981;ATF5_CREB3:-1.07822263128;FOXP3:-1.09625946764;FOXN1:-1.10660793184;ATF4:-1.13634898539;AHR_ARNT_ARNT2:-1.16089216394;HIF1A:-1.1708046916;FOXP1:-1.22972353527;HOX{A4,D4}:-1.24838324746;STAT1,3:-1.25266006764;MYBL2:-1.28688377727;RFX2..5_RFXANK_RFXAP:-1.35587201518;NKX3-1:-1.36426175634;DBP:-1.40940731027;PDX1:-1.4965760482;NKX6-1,2:-1.70404406949 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11264-116G4;search_select_hide=table117:FF:11264-116G4 | |||
}} | }} | ||
Latest revision as of 16:29, 3 June 2020
| Name: | Endothelial Cells - Artery, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12496 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12496
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12496
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.902 |
| 10 | 10 | 0.204 |
| 100 | 100 | 0.951 |
| 101 | 101 | 0.112 |
| 102 | 102 | 0.73 |
| 103 | 103 | 0.58 |
| 104 | 104 | 0.671 |
| 105 | 105 | 0.898 |
| 106 | 106 | 0.246 |
| 107 | 107 | 0.0479 |
| 108 | 108 | 0.303 |
| 109 | 109 | 0.33 |
| 11 | 11 | 0.257 |
| 110 | 110 | 0.0708 |
| 111 | 111 | 0.74 |
| 112 | 112 | 0.467 |
| 113 | 113 | 0.372 |
| 114 | 114 | 0.511 |
| 115 | 115 | 0.698 |
| 116 | 116 | 0.285 |
| 117 | 117 | 0.772 |
| 118 | 118 | 0.339 |
| 119 | 119 | 0.777 |
| 12 | 12 | 0.573 |
| 120 | 120 | 0.00172 |
| 121 | 121 | 0.609 |
| 122 | 122 | 0.681 |
| 123 | 123 | 0.00461 |
| 124 | 124 | 0.126 |
| 125 | 125 | 0.915 |
| 126 | 126 | 0.713 |
| 127 | 127 | 0.439 |
| 128 | 128 | 0.435 |
| 129 | 129 | 0.398 |
| 13 | 13 | 0.886 |
| 130 | 130 | 0.889 |
| 131 | 131 | 0.532 |
| 132 | 132 | 0.137 |
| 133 | 133 | 0.905 |
| 134 | 134 | 0.548 |
| 135 | 135 | 0.305 |
| 136 | 136 | 0.413 |
| 137 | 137 | 0.106 |
| 138 | 138 | 0.572 |
| 139 | 139 | 0.562 |
| 14 | 14 | 0.914 |
| 140 | 140 | 0.711 |
| 141 | 141 | 0.915 |
| 142 | 142 | 0.762 |
| 143 | 143 | 0.105 |
| 144 | 144 | 0.727 |
| 145 | 145 | 0.197 |
| 146 | 146 | 0.399 |
| 147 | 147 | 0.0626 |
| 148 | 148 | 0.442 |
| 149 | 149 | 0.0124 |
| 15 | 15 | 0.964 |
| 150 | 150 | 0.184 |
| 151 | 151 | 0.804 |
| 152 | 152 | 0.0194 |
| 153 | 153 | 0.0626 |
| 154 | 154 | 0.337 |
| 155 | 155 | 0.564 |
| 156 | 156 | 0.301 |
| 157 | 157 | 0.871 |
| 158 | 158 | 0.107 |
| 159 | 159 | 0.843 |
| 16 | 16 | 0.471 |
| 160 | 160 | 0.034 |
| 161 | 161 | 0.273 |
| 162 | 162 | 0.883 |
| 163 | 163 | 0.725 |
| 164 | 164 | 0.366 |
| 165 | 165 | 0.121 |
| 166 | 166 | 0.518 |
| 167 | 167 | 0.132 |
| 168 | 168 | 0.336 |
| 169 | 169 | 0.0688 |
| 17 | 17 | 0.261 |
| 18 | 18 | 0.839 |
| 19 | 19 | 0.283 |
| 2 | 2 | 0.27 |
| 20 | 20 | 0.559 |
| 21 | 21 | 0.851 |
| 22 | 22 | 0.247 |
| 23 | 23 | 0.252 |
| 24 | 24 | 0.731 |
| 25 | 25 | 0.378 |
| 26 | 26 | 0.803 |
| 27 | 27 | 0.226 |
| 28 | 28 | 0.182 |
| 29 | 29 | 0.854 |
| 3 | 3 | 0.841 |
| 30 | 30 | 0.672 |
| 31 | 31 | 0.65 |
| 32 | 32 | 0.48 |
| 33 | 33 | 0.361 |
| 34 | 34 | 0.0755 |
| 35 | 35 | 0.444 |
| 36 | 36 | 0.248 |
| 37 | 37 | 0.299 |
| 38 | 38 | 0.183 |
| 39 | 39 | 0.508 |
| 4 | 4 | 0.969 |
| 40 | 40 | 0.00508 |
| 41 | 41 | 0.0806 |
| 42 | 42 | 0.913 |
| 43 | 43 | 0.795 |
| 44 | 44 | 0.774 |
| 45 | 45 | 0.234 |
| 46 | 46 | 0.496 |
| 47 | 47 | 0.588 |
| 48 | 48 | 0.138 |
| 49 | 49 | 0.734 |
| 5 | 5 | 0.878 |
| 50 | 50 | 0.744 |
| 51 | 51 | 0.616 |
| 52 | 52 | 0.698 |
| 53 | 53 | 0.325 |
| 54 | 54 | 0.525 |
| 55 | 55 | 0.714 |
| 56 | 56 | 0.76 |
| 57 | 57 | 0.561 |
| 58 | 58 | 0.191 |
| 59 | 59 | 0.0624 |
| 6 | 6 | 0.21 |
| 60 | 60 | 0.868 |
| 61 | 61 | 0.837 |
| 62 | 62 | 0.672 |
| 63 | 63 | 0.396 |
| 64 | 64 | 0.68 |
| 65 | 65 | 0.119 |
| 66 | 66 | 0.605 |
| 67 | 67 | 0.409 |
| 68 | 68 | 0.0552 |
| 69 | 69 | 0.23 |
| 7 | 7 | 0.972 |
| 70 | 70 | 0.677 |
| 71 | 71 | 0.689 |
| 72 | 72 | 0.102 |
| 73 | 73 | 0.00241 |
| 74 | 74 | 0.348 |
| 75 | 75 | 0.546 |
| 76 | 76 | 0.409 |
| 77 | 77 | 0.0382 |
| 78 | 78 | 0.815 |
| 79 | 79 | 0.0138 |
| 8 | 8 | 0.0276 |
| 80 | 80 | 0.237 |
| 81 | 81 | 0.597 |
| 82 | 82 | 0.744 |
| 83 | 83 | 0.415 |
| 84 | 84 | 0.465 |
| 85 | 85 | 0.819 |
| 86 | 86 | 0.655 |
| 87 | 87 | 0.111 |
| 88 | 88 | 0.8 |
| 89 | 89 | 0.145 |
| 9 | 9 | 0.327 |
| 90 | 90 | 0.117 |
| 91 | 91 | 0.363 |
| 92 | 92 | 0.507 |
| 93 | 93 | 0.841 |
| 94 | 94 | 0.965 |
| 95 | 95 | 0.0419 |
| 96 | 96 | 0.35 |
| 97 | 97 | 0.552 |
| 98 | 98 | 0.372 |
| 99 | 99 | 0.0135 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12496
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000047 human endothelial cell of the artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
