FF:11264-116G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005974 | |DRA_sample_Accession=CAGE@SAMD00005974 | ||
|accession_numbers=CAGE;DRX008220;DRR009092;DRZ000517;DRZ001902 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005974 | ||
|accession_numbers=CAGE;DRX008220;DRR009092;DRZ000517;DRZ001902;DRZ011867;DRZ013252 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037034;DRR041400;DRZ007042 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.35!291.55!SOX18;;chr21:39870339..39870443,-!p1@ERG!2.03!106.13!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.98!95.23!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.93!84.74!SOX17;;chr17:6926362..6926377,+!p1@BCL6B!1.82!64.60!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.71!50.76!HES2;;chr18:53068911..53068935,-!p4@TCF4!1.62!45.31!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.14!ZBED1;;chr11:65429891..65429915,-!p7@RELA!1.45!27.27!RELA;;chr6:34204921..34204939,+!p3@HMGA1!1.44!755.10!HMGA1;;chr12:96588368..96588394,+!p3@ELK3!1.43!67.96!ELK3;;chr6:126070769..126070801,+!p1@HEY2!1.43!29.78!HEY2;;chr19:13213511..13213545,-!p2@LYL1!1.43!28.11!LYL1;;chr18:19749541..19749557,+!p1@GATA6!1.41!75.09!GATA6;;chr10:94449703..94449718,+!p1@HHEX!1.37!85.58!HHEX;;chr19:13213399..13213414,-!p6@LYL1!1.25!16.78!LYL1;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.78!GATA4;;chr16:86600426..86600441,+!p1@FOXC2!1.23!39.01!FOXC2;;chr5:92918919..92918942,+!p1@NR2F1!1.19!63.76!NR2F1;;chr3:128206762..128206781,-!p2@GATA2!1.12!75.09!GATA2;;chr20:6748325..6748352,+!p1@BMP2!1.11!17.20!BMP2;;chr7:35293685..35293718,-!p1@TBX20!1.08!10.91!TBX20;;chr19:13213555..13213568,-!p5@LYL1!1.06!10.49!LYL1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!28.11!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.91!MECOM;;chr2:237077022..237077038,-!p1@GBX2!1.01!9.23!GBX2;;chr19:13213662..13213686,-!p1@LYL1!1.00!13.42!LYL1;;chr15:83953397..83953425,-!p1@BNC1!0.99!10.07!BNC1;;chr9:16705069..16705086,-!p3@BNC2!0.97!8.39!BNC2;;chr1:47695003..47695042,-!p2@TAL1!0.97!8.39!TAL1;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.42!TFAP2A;;chr4:174451370..174451387,-!p1@HAND2!0.95!7.97!HAND2;;chr17:46655672..46655697,-!p3@HOXB4!0.93!7.55!HOXB4;;chr1:200008734..200008765,+!p2@NR5A2!0.93!7.55!NR5A2;;chr7:149470641..149470694,-!p1@ZNF467!0.91!33.98!ZNF467;;chr20:42543441..42543497,+!p1@TOX2!0.91!33.56!TOX2;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.49!HMGA2;;chr10:31288370..31288393,-!p3@ZNF438!0.91!7.13!ZNF438;;chr14:38064429..38064486,-!p1@FOXA1!0.91!7.13!FOXA1;;chr17:8027418..8027432,-!p1@HES7!0.91!7.13!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.91!7.13!TCF4;;chr11:65430554..65430579,-!p3@RELA!0.90!18.46!RELA;;chr4:57522166..57522260,-!p2@HOPX!0.90!7.97!HOPX;;chr19:46801639..46801699,+!p1@HIF3A!0.89!6.71!HIF3A;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.95!ZNF521;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.52!TOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.85!724.06!HMGA1;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.20!HHEX;;chr15:96876966..96877017,+!p12@NR2F2!0.84!8.81!NR2F2;;chr18:53068982..53068993,-!p20@TCF4!0.84!5.87!TCF4;;chr5:92918956..92918969,+!p4@NR2F1!0.83!6.29!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.15!MLLT11;;chr12:66218183..66218209,+!p4@HMGA2!0.82!11.33!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.81!10.07!TBX18;;chr5:92918894..92918912,+!p2@NR2F1!0.80!18.46!NR2F1;;chr19:1652555..1652568,-!p2@TCF3!0.79!22.65!TCF3;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.55!GATA6;;chr15:96874012..96874042,+!p2@NR2F2!0.78!49.08!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.78!26.85!NFE2L3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.29!TFAP2A;;chr8:55370720..55370733,+!p2@SOX17!0.78!5.03!SOX17;;chr18:53068940..53068951,-!p21@TCF4!0.78!5.03!TCF4;;chr3:25469815..25469866,+!p3@RARB!0.78!5.03!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.78!5.03!HOPX;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!382.58!TAX1BP3;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.39!ATOH8;;chr3:168864315..168864339,-!p2@MECOM!0.77!8.39!MECOM;;chr15:96873984..96873999,+!p3@NR2F2!0.76!38.59!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.91!HMGA2;;chr2:46524537..46524553,+!p1@EPAS1!0.75!510.11!EPAS1;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.39!ETV4;;chr19:56152332..56152347,+!p4@ZNF580!0.75!11.33!ZNF580;;chr8:37963466..37963506,+!p3@ASH2L!0.75!5.87!ASH2L;;chr7:115670804..115670825,-!p1@TFEC!0.75!4.61!TFEC;;chr7:139741594..139741615,-!p5@PARP12!0.75!4.61!PARP12;;chr14:74256787..74256858,-!p6@C14orf43!0.75!4.61!C14orf43;;chr17:6926381..6926392,+!p2@BCL6B!0.75!4.61!BCL6B;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.83!FLI1;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!36.92!ZMAT3;;chr9:14314131..14314147,-!p2@NFIB!0.74!27.69!NFIB;;chr11:65667884..65667895,-!p2@FOSL1!0.74!19.30!FOSL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.72!12.17!ZFPM2;;chr15:66994561..66994597,+!p2@SMAD6!0.72!10.91!SMAD6;;chr19:13213465..13213478,-!p7@LYL1!0.72!4.19!LYL1;;chr4:57522674..57522699,-!p5@HOPX!0.72!4.19!HOPX;;chr6:28321971..28321995,-!p1@ZNF323!0.72!4.19!ZNF323;;chr12:3068544..3068597,+!p1@TEAD4!0.71!27.69!TEAD4;;chr2:74730430..74730451,-!p1@LBX2!0.71!7.13!LBX2;;chr19:49864746..49864780,-!p2@TEAD2!0.71!5.87!TEAD2;;chr8:106330696..106330719,+!p2@ZFPM2!0.71!5.45!ZFPM2;;chr15:96873921..96873946,+!p1@NR2F2!0.70!130.04!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.29!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!0.70!6.29!HOXB4;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.55!GATA6;;chr5:92920456..92920488,+!p9@NR2F1!0.69!4.61!NR2F1;;chr6:21593973..21593988,+!p1@SOX4!0.68!158.99!SOX4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.68!18.04!LRRFIP2;;chr15:96874145..96874166,+!p7@NR2F2!0.68!7.97!NR2F2;;chr1:170633348..170633399,+!p2@PRRX1!0.68!5.45!PRRX1;;chr1:47696918..47696935,-!p6@TAL1!0.68!3.78!TAL1;;chr1:61869752..61869782,+!p13@NFIA!0.68!3.78!NFIA;;chr16:86600870..86600921,+!p2@FOXC2!0.68!3.78!FOXC2;;chr2:237076992..237077008,-!p2@GBX2!0.68!3.78!GBX2;;chr3:25470156..25470227,+!p2@RARB!0.68!3.78!RARB;;chr4:2263809..2263854,-!p1@MXD4!0.67!164.44!MXD4;;chr22:38597987..38598021,+!p2@MAFF!0.67!25.59!MAFF;;chr11:65667846..65667868,-!p1@FOSL1!0.66!109.49!FOSL1;;chr19:49865646..49865718,-!p1@TEAD2!0.66!35.24!TEAD2;;chr14:21566540..21566580,-!p2@ZNF219!0.66!5.03!ZNF219;;chr9:14314106..14314119,-!p5@NFIB!0.65!6.71!NFIB;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.23!NR2F2;;chr18:53068893..53068902,-!p28@TCF4!0.64!3.36!TCF4;;chr5:92919452..92919496,+!p11@NR2F1!0.64!3.36!NR2F1;;chr1:200011711..200011752,+!p3@NR5A2!0.64!3.36!NR5A2;;chr4:174450089..174450153,-!p2@HAND2!0.64!3.36!HAND2;;chr1:23885981..23886002,-!p1@ID3!0.63!690.08!ID3;;chr18:51750839..51750885,-!p2@MBD2!0.63!38.59!MBD2;;chr1:158979792..158979814,+!p2@IFI16!0.63!36.50!IFI16;;chr15:96873861..96873872,+!p9@NR2F2!0.63!7.55!NR2F2;;chr19:53496768..53496799,-!p1@ZNF702P!0.63!5.45!ZNF702P;;chr12:66218836..66218888,+!p1@HMGA2!0.62!34.82!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.62!23.91!HIC1;;chr2:85360499..85360598,+!p1@TCF7L1!0.62!20.97!TCF7L1;;chr9:35732647..35732678,+!p2@CREB3!0.62!20.56!CREB3;;chr11:65686732..65686756,+!p2@DRAP1!0.62!15.52!DRAP1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.62!10.07!ZC3H7B;;chr10:31288398..31288455,-!p2@ZNF438!0.62!3.78!ZNF438;;chr11:65430535..65430549,-!p4@RELA!0.62!3.78!RELA;;chr8:128749984..128750033,+!p4@MYC!0.61!13.00!MYC;;chr12:3068501..3068515,+!p4@TEAD4!0.61!5.87!TEAD4;;chr1:158985493..158985535,+!p4@IFI16!0.61!5.03!IFI16;;chr9:35732514..35732530,+!p5@CREB3!0.61!4.61!CREB3;;chr10:8096772..8096787,+!p2@GATA3!0.61!3.78!GATA3;;chr12:66218152..66218174,+!p10@HMGA2!0.61!3.36!HMGA2;;chr17:4890695..4890773,-!p2@CAMTA2!0.60!10.91!CAMTA2;;chr1:151032922..151032951,+!p2@MLLT11!0.60!5.45!MLLT11;;chr6:1610293..1610310,+!p1@FOXC1!0.60!5.45!FOXC1;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.78!TBX18;;chr15:83953373..83953386,-!p2@BNC1!0.60!2.94!BNC1;;chr18:19749504..19749515,+!p5@GATA6!0.60!2.94!GATA6;;chr13:41240717..41240735,-!p2@FOXO1!0.59!23.91!FOXO1;;chr16:29819446..29819471,+!p9@MAZ!0.59!10.07!MAZ;;chr18:77155922..77155939,+!p1@NFATC1!0.59!9.23!NFATC1;;chr7:100076765..100076861,-!p1@TSC22D4!0.58!120.82!TSC22D4;;chr6:44233252..44233296,-!p1@NFKBIE!0.58!33.98!NFKBIE;;chr11:65687222..65687240,+!p7@DRAP1!0.58!3.78!DRAP1;;chr11:62368696..62368759,-!p4@MTA2!0.57!20.56!MTA2;;chr14:74226961..74227020,-!p1@C14orf43!0.56!21.39!C14orf43;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.91!TEAD4;;chr2:242576431..242576458,-!p3@THAP4!0.56!7.55!THAP4;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.61!TSC22D4;;chr3:25469724..25469773,+!p1@RARB!0.56!4.19!RARB;;chr2:46602901..46602926,+!p7@EPAS1!0.56!3.78!EPAS1;;chr5:92919100..92919135,+!p3@NR2F1!0.56!3.36!NR2F1;;chr15:67357924..67357952,+!p2@SMAD3!0.55!20.97!SMAD3;;chr17:41623009..41623053,-!p4@ETV4!0.55!4.61!ETV4;;chr2:85980951..85981004,+!p1@ATOH8!0.55!4.61!ATOH8;;chr3:21792585..21792625,-!p2@ZNF385D!0.55!2.94!ZNF385D;;chr5:92918860..92918871,+!p10@NR2F1!0.55!2.94!NR2F1;;chr7:27153454..27153469,-!p2@HOXA3!0.55!2.52!HOXA3;;chr3:147111198..147111225,+!p4@ZIC1!0.55!2.52!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.55!2.52!ZNF385D;;chr4:57522513..57522548,-!p4@HOPX!0.55!2.52!HOPX;;chr1:47697539..47697573,-!p3@TAL1!0.55!2.52!TAL1;;chr16:30406423..30406447,+!p4@ZNF48!0.55!2.52!ZNF48;;chr16:86600458..86600461,+!p3@FOXC2!0.55!2.52!FOXC2;;chr15:67358163..67358192,+!p1@SMAD3!0.54!73.83!SMAD3;;chr11:47236489..47236567,+!p2@DDB2!0.54!43.21!DDB2;;chr17:38498594..38498661,+!p2@RARA!0.54!10.07!RARA;;chr16:1429627..1429662,-!p2@UNKL!0.54!8.81!UNKL;;chr19:56652686..56652701,+!p3@ZNF444!0.54!5.03!ZNF444;;chr19:19303794..19303805,+!p5@RFXANK!0.54!2.94!RFXANK;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.50!NFIB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.85!PPP1R13L;;chr18:51750888..51750920,-!p3@MBD2!0.53!21.81!MBD2;;chr20:48599506..48599526,+!p1@SNAI1!0.53!19.30!SNAI1;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.78!ZBTB16;;chr19:13136130..13136165,+!p6@NFIX!0.53!3.36!NFIX;;chr1:221052840..221052875,+!p4@HLX!0.53!2.94!HLX;;chr17:7590797..7590815,-!p1@TP53!0.52!130.04!TP53;;chr8:128748308..128748324,+!p2@MYC!0.52!83.06!MYC;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.08!MYBL2;;chr13:72441315..72441454,-!p1@DACH1!0.52!5.45!DACH1;;chr12:124873357..124873401,-!p1@NCOR2!0.51!33.56!NCOR2;;chr5:321810..321877,+!p1@AHRR!0.51!8.81!AHRR;;chr1:221052776..221052799,+!p1@HLX!0.51!4.61!HLX;;chr1:41827095..41827155,+!p1@FOXO6!0.51!3.36!FOXO6;;chr12:30681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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.35!291.55!SOX18;;chr21:39870339..39870443,-!p1@ERG!2.03!106.13!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.98!95.23!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.93!84.74!SOX17;;chr17:6926362..6926377,+!p1@BCL6B!1.82!64.60!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.71!50.76!HES2;;chr18:53068911..53068935,-!p4@TCF4!1.62!45.31!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.14!ZBED1;;chr11:65429891..65429915,-!p7@RELA!1.45!27.27!RELA;;chr6:34204921..34204939,+!p3@HMGA1!1.44!755.10!HMGA1;;chr12:96588368..96588394,+!p3@ELK3!1.43!67.96!ELK3;;chr6:126070769..126070801,+!p1@HEY2!1.43!29.78!HEY2;;chr19:13213511..13213545,-!p2@LYL1!1.43!28.11!LYL1;;chr18:19749541..19749557,+!p1@GATA6!1.41!75.09!GATA6;;chr10:94449703..94449718,+!p1@HHEX!1.37!85.58!HHEX;;chr19:13213399..13213414,-!p6@LYL1!1.25!16.78!LYL1;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.78!GATA4;;chr16:86600426..86600441,+!p1@FOXC2!1.23!39.01!FOXC2;;chr5:92918919..92918942,+!p1@NR2F1!1.19!63.76!NR2F1;;chr3:128206762..128206781,-!p2@GATA2!1.12!75.09!GATA2;;chr20:6748325..6748352,+!p1@BMP2!1.11!17.20!BMP2;;chr7:35293685..35293718,-!p1@TBX20!1.08!10.91!TBX20;;chr19:13213555..13213568,-!p5@LYL1!1.06!10.49!LYL1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!28.11!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.91!MECOM;;chr2:237077022..237077038,-!p1@GBX2!1.01!9.23!GBX2;;chr19:13213662..13213686,-!p1@LYL1!1.00!13.42!LYL1;;chr15:83953397..83953425,-!p1@BNC1!0.99!10.07!BNC1;;chr9:16705069..16705086,-!p3@BNC2!0.97!8.39!BNC2;;chr1:47695003..47695042,-!p2@TAL1!0.97!8.39!TAL1;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.42!TFAP2A;;chr4:174451370..174451387,-!p1@HAND2!0.95!7.97!HAND2;;chr17:46655672..46655697,-!p3@HOXB4!0.93!7.55!HOXB4;;chr1:200008734..200008765,+!p2@NR5A2!0.93!7.55!NR5A2;;chr7:149470641..149470694,-!p1@ZNF467!0.91!33.98!ZNF467;;chr20:42543441..42543497,+!p1@TOX2!0.91!33.56!TOX2;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.49!HMGA2;;chr10:31288370..31288393,-!p3@ZNF438!0.91!7.13!ZNF438;;chr14:38064429..38064486,-!p1@FOXA1!0.91!7.13!FOXA1;;chr17:8027418..8027432,-!p1@HES7!0.91!7.13!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.91!7.13!TCF4;;chr11:65430554..65430579,-!p3@RELA!0.90!18.46!RELA;;chr4:57522166..57522260,-!p2@HOPX!0.90!7.97!HOPX;;chr19:46801639..46801699,+!p1@HIF3A!0.89!6.71!HIF3A;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.95!ZNF521;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.52!TOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.85!724.06!HMGA1;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.20!HHEX;;chr15:96876966..96877017,+!p12@NR2F2!0.84!8.81!NR2F2;;chr18:53068982..53068993,-!p20@TCF4!0.84!5.87!TCF4;;chr5:92918956..92918969,+!p4@NR2F1!0.83!6.29!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.15!MLLT11;;chr12:66218183..66218209,+!p4@HMGA2!0.82!11.33!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.81!10.07!TBX18;;chr5:92918894..92918912,+!p2@NR2F1!0.80!18.46!NR2F1;;chr19:1652555..1652568,-!p2@TCF3!0.79!22.65!TCF3;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.55!GATA6;;chr15:96874012..96874042,+!p2@NR2F2!0.78!49.08!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.78!26.85!NFE2L3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.29!TFAP2A;;chr8:55370720..55370733,+!p2@SOX17!0.78!5.03!SOX17;;chr18:53068940..53068951,-!p21@TCF4!0.78!5.03!TCF4;;chr3:25469815..25469866,+!p3@RARB!0.78!5.03!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.78!5.03!HOPX;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!382.58!TAX1BP3;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.39!ATOH8;;chr3:168864315..168864339,-!p2@MECOM!0.77!8.39!MECOM;;chr15:96873984..96873999,+!p3@NR2F2!0.76!38.59!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.91!HMGA2;;chr2:46524537..46524553,+!p1@EPAS1!0.75!510.11!EPAS1;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.39!ETV4;;chr19:56152332..56152347,+!p4@ZNF580!0.75!11.33!ZNF580;;chr8:37963466..37963506,+!p3@ASH2L!0.75!5.87!ASH2L;;chr7:115670804..115670825,-!p1@TFEC!0.75!4.61!TFEC;;chr7:139741594..139741615,-!p5@PARP12!0.75!4.61!PARP12;;chr14:74256787..74256858,-!p6@C14orf43!0.75!4.61!C14orf43;;chr17:6926381..6926392,+!p2@BCL6B!0.75!4.61!BCL6B;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.83!FLI1;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!36.92!ZMAT3;;chr9:14314131..14314147,-!p2@NFIB!0.74!27.69!NFIB;;chr11:65667884..65667895,-!p2@FOSL1!0.74!19.30!FOSL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.72!12.17!ZFPM2;;chr15:66994561..66994597,+!p2@SMAD6!0.72!10.91!SMAD6;;chr19:13213465..13213478,-!p7@LYL1!0.72!4.19!LYL1;;chr4:57522674..57522699,-!p5@HOPX!0.72!4.19!HOPX;;chr6:28321971..28321995,-!p1@ZNF323!0.72!4.19!ZNF323;;chr12:3068544..3068597,+!p1@TEAD4!0.71!27.69!TEAD4;;chr2:74730430..74730451,-!p1@LBX2!0.71!7.13!LBX2;;chr19:49864746..49864780,-!p2@TEAD2!0.71!5.87!TEAD2;;chr8:106330696..106330719,+!p2@ZFPM2!0.71!5.45!ZFPM2;;chr15:96873921..96873946,+!p1@NR2F2!0.70!130.04!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.29!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!0.70!6.29!HOXB4;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.55!GATA6;;chr5:92920456..92920488,+!p9@NR2F1!0.69!4.61!NR2F1;;chr6:21593973..21593988,+!p1@SOX4!0.68!158.99!SOX4;;chr3:37217736..37217753,-!p2@LRRFIP2!0.68!18.04!LRRFIP2;;chr15:96874145..96874166,+!p7@NR2F2!0.68!7.97!NR2F2;;chr1:170633348..170633399,+!p2@PRRX1!0.68!5.45!PRRX1;;chr1:47696918..47696935,-!p6@TAL1!0.68!3.78!TAL1;;chr1:61869752..61869782,+!p13@NFIA!0.68!3.78!NFIA;;chr16:86600870..86600921,+!p2@FOXC2!0.68!3.78!FOXC2;;chr2:237076992..237077008,-!p2@GBX2!0.68!3.78!GBX2;;chr3:25470156..25470227,+!p2@RARB!0.68!3.78!RARB;;chr4:2263809..2263854,-!p1@MXD4!0.67!164.44!MXD4;;chr22:38597987..38598021,+!p2@MAFF!0.67!25.59!MAFF;;chr11:65667846..65667868,-!p1@FOSL1!0.66!109.49!FOSL1;;chr19:49865646..49865718,-!p1@TEAD2!0.66!35.24!TEAD2;;chr14:21566540..21566580,-!p2@ZNF219!0.66!5.03!ZNF219;;chr9:14314106..14314119,-!p5@NFIB!0.65!6.71!NFIB;;chr15:96874244..96874259,+!p5@NR2F2!0.64!9.23!NR2F2;;chr18:53068893..53068902,-!p28@TCF4!0.64!3.36!TCF4;;chr5:92919452..92919496,+!p11@NR2F1!0.64!3.36!NR2F1;;chr1:200011711..200011752,+!p3@NR5A2!0.64!3.36!NR5A2;;chr4:174450089..174450153,-!p2@HAND2!0.64!3.36!HAND2;;chr1:23885981..23886002,-!p1@ID3!0.63!690.08!ID3;;chr18:51750839..51750885,-!p2@MBD2!0.63!38.59!MBD2;;chr1:158979792..158979814,+!p2@IFI16!0.63!36.50!IFI16;;chr15:96873861..96873872,+!p9@NR2F2!0.63!7.55!NR2F2;;chr19:53496768..53496799,-!p1@ZNF702P!0.63!5.45!ZNF702P;;chr12:66218836..66218888,+!p1@HMGA2!0.62!34.82!HMGA2;;chr17:1958388..1958404,+!p1@HIC1!0.62!23.91!HIC1;;chr2:85360499..85360598,+!p1@TCF7L1!0.62!20.97!TCF7L1;;chr9:35732647..35732678,+!p2@CREB3!0.62!20.56!CREB3;;chr11:65686732..65686756,+!p2@DRAP1!0.62!15.52!DRAP1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.62!10.07!ZC3H7B;;chr10:31288398..31288455,-!p2@ZNF438!0.62!3.78!ZNF438;;chr11:65430535..65430549,-!p4@RELA!0.62!3.78!RELA;;chr8:128749984..128750033,+!p4@MYC!0.61!13.00!MYC;;chr12:3068501..3068515,+!p4@TEAD4!0.61!5.87!TEAD4;;chr1:158985493..158985535,+!p4@IFI16!0.61!5.03!IFI16;;chr9:35732514..35732530,+!p5@CREB3!0.61!4.61!CREB3;;chr10:8096772..8096787,+!p2@GATA3!0.61!3.78!GATA3;;chr12:66218152..66218174,+!p10@HMGA2!0.61!3.36!HMGA2;;chr17:4890695..4890773,-!p2@CAMTA2!0.60!10.91!CAMTA2;;chr1:151032922..151032951,+!p2@MLLT11!0.60!5.45!MLLT11;;chr6:1610293..1610310,+!p1@FOXC1!0.60!5.45!FOXC1;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.78!TBX18;;chr15:83953373..83953386,-!p2@BNC1!0.60!2.94!BNC1;;chr18:19749504..19749515,+!p5@GATA6!0.60!2.94!GATA6;;chr13:41240717..41240735,-!p2@FOXO1!0.59!23.91!FOXO1;;chr16:29819446..29819471,+!p9@MAZ!0.59!10.07!MAZ;;chr18:77155922..77155939,+!p1@NFATC1!0.59!9.23!NFATC1;;chr7:100076765..100076861,-!p1@TSC22D4!0.58!120.82!TSC22D4;;chr6:44233252..44233296,-!p1@NFKBIE!0.58!33.98!NFKBIE;;chr11:65687222..65687240,+!p7@DRAP1!0.58!3.78!DRAP1;;chr11:62368696..62368759,-!p4@MTA2!0.57!20.56!MTA2;;chr14:74226961..74227020,-!p1@C14orf43!0.56!21.39!C14orf43;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.91!TEAD4;;chr2:242576431..242576458,-!p3@THAP4!0.56!7.55!THAP4;;chr7:100076723..100076737,-!p3@TSC22D4!0.56!4.61!TSC22D4;;chr3:25469724..25469773,+!p1@RARB!0.56!4.19!RARB;;chr2:46602901..46602926,+!p7@EPAS1!0.56!3.78!EPAS1;;chr5:92919100..92919135,+!p3@NR2F1!0.56!3.36!NR2F1;;chr15:67357924..67357952,+!p2@SMAD3!0.55!20.97!SMAD3;;chr17:41623009..41623053,-!p4@ETV4!0.55!4.61!ETV4;;chr2:85980951..85981004,+!p1@ATOH8!0.55!4.61!ATOH8;;chr3:21792585..21792625,-!p2@ZNF385D!0.55!2.94!ZNF385D;;chr5:92918860..92918871,+!p10@NR2F1!0.55!2.94!NR2F1;;chr7:27153454..27153469,-!p2@HOXA3!0.55!2.52!HOXA3;;chr3:147111198..147111225,+!p4@ZIC1!0.55!2.52!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.55!2.52!ZNF385D;;chr4:57522513..57522548,-!p4@HOPX!0.55!2.52!HOPX;;chr1:47697539..47697573,-!p3@TAL1!0.55!2.52!TAL1;;chr16:30406423..30406447,+!p4@ZNF48!0.55!2.52!ZNF48;;chr16:86600458..86600461,+!p3@FOXC2!0.55!2.52!FOXC2;;chr15:67358163..67358192,+!p1@SMAD3!0.54!73.83!SMAD3;;chr11:47236489..47236567,+!p2@DDB2!0.54!43.21!DDB2;;chr17:38498594..38498661,+!p2@RARA!0.54!10.07!RARA;;chr16:1429627..1429662,-!p2@UNKL!0.54!8.81!UNKL;;chr19:56652686..56652701,+!p3@ZNF444!0.54!5.03!ZNF444;;chr19:19303794..19303805,+!p5@RFXANK!0.54!2.94!RFXANK;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.50!NFIB;;chr19:45908292..45908374,-!p1@PPP1R13L!0.53!26.85!PPP1R13L;;chr18:51750888..51750920,-!p3@MBD2!0.53!21.81!MBD2;;chr20:48599506..48599526,+!p1@SNAI1!0.53!19.30!SNAI1;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.78!ZBTB16;;chr19:13136130..13136165,+!p6@NFIX!0.53!3.36!NFIX;;chr1:221052840..221052875,+!p4@HLX!0.53!2.94!HLX;;chr17:7590797..7590815,-!p1@TP53!0.52!130.04!TP53;;chr8:128748308..128748324,+!p2@MYC!0.52!83.06!MYC;;chr20:42295745..42295765,+!p1@MYBL2!0.52!49.08!MYBL2;;chr13:72441315..72441454,-!p1@DACH1!0.52!5.45!DACH1;;chr12:124873357..124873401,-!p1@NCOR2!0.51!33.56!NCOR2;;chr5:321810..321877,+!p1@AHRR!0.51!8.81!AHRR;;chr1:221052776..221052799,+!p1@HLX!0.51!4.61!HLX;;chr1:41827095..41827155,+!p1@FOXO6!0.51!3.36!FOXO6;;chr12:30681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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |ffid_belonging_in_development=CL:0002546,CL:0000222 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11264-116G4 | |id=FF:11264-116G4 | ||
|is_a=EFO:0002091;;FF:0000047 | |is_a=EFO:0002091;;FF:0000047 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12496 | |library_id=CNhs12496 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs12496 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11264 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TGACCA.11264 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11264 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TGACCA.11264 | |||
|name=Endothelial Cells - Artery, donor1 | |name=Endothelial Cells - Artery, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 51: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12496,LSID916,release011,COMPLETED | |profile_hcage=CNhs12496,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 67: | Line 82: | ||
|rna_tube_id=116G4 | |rna_tube_id=116G4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.TGACCA | |||
|sample_age=51 | |sample_age=51 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 90: | Line 106: | ||
|top_motifs=RXR{A,B,G}:1.88070414889;SOX{8,9,10}:1.48325306298;TLX1..3_NFIC{dimer}:1.28076373042;AR:1.21850874214;bHLH_family:1.13941020419;NFATC1..3:1.13176977334;IKZF1:0.907730964429;TP53:0.866932006866;HIC1:0.863941089482;TFAP2{A,C}:0.833466005924;XCPE1{core}:0.812295297335;ONECUT1,2:0.79993776284;LHX3,4:0.746875477811;TFAP4:0.742935678784;PAX1,9:0.697306727688;ZNF423:0.693964647828;HBP1_HMGB_SSRP1_UBTF:0.684413793112;ZNF148:0.66215895104;GTF2A1,2:0.656032326879;ARID5B:0.617362701134;GZF1:0.613953125979;FOX{I1,J2}:0.610409388246;ETS1,2:0.610088056029;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.578709238263;EBF1:0.575234219608;GATA6:0.570189032407;PAX6:0.566120782217;LEF1_TCF7_TCF7L1,2:0.554315737978;ZBTB6:0.553323408659;ESRRA:0.552973252968;NKX2-2,8:0.486280702217;PAX8:0.470855792796;HOX{A5,B5}:0.462201999625;UFEwm:0.438680241465;PAX5:0.437812520009;SOX17:0.431369573689;SP1:0.408104150089;TFAP2B:0.399076017299;REST:0.392949273912;SPIB:0.377370912266;NR3C1:0.363862357065;ELF1,2,4:0.357680558042;SPZ1:0.348940951831;MTE{core}:0.337736397081;SOX5:0.31420063976;STAT5{A,B}:0.292568698109;ADNP_IRX_SIX_ZHX:0.270354588957;BACH2:0.259557094548;NFE2:0.243338669753;NFE2L1:0.241312007779;POU3F1..4:0.239866764934;NR5A1,2:0.238794413576;PRDM1:0.230422548167;ALX1:0.218654499424;CRX:0.206267895496;HES1:0.198994318457;PPARG:0.196501574661;NANOG:0.190064085928;TEAD1:0.188926940142;TFDP1:0.172994829367;HAND1,2:0.16685404168;RREB1:0.159300058267;ZFP161:0.154348401466;SOX2:0.151946193238;TFCP2:0.149863520206;FOS_FOS{B,L1}_JUN{B,D}:0.148591932944;SMAD1..7,9:0.138761683965;GTF2I:0.12916371604;NKX3-2:0.110869844767;GATA4:0.109245842988;TLX2:0.107637608128;HNF4A_NR2F1,2:0.107218614752;IKZF2:0.084001847209;ZIC1..3:0.0799656513752;GCM1,2:0.07840410928;EN1,2:0.0644430518016;SRF:0.0631540951379;RORA:0.0513833849953;POU2F1..3:0.0261260807821;RXRA_VDR{dimer}:0.019317354226;NHLH1,2:-0.0040683184025;PATZ1:-0.0122659992161;KLF4:-0.0133980222562;GLI1..3:-0.025168915386;FOXL1:-0.0353492902385;SPI1:-0.0383266317824;MED-1{core}:-0.0418561188424;NFE2L2:-0.0537515653276;TBP:-0.0539231994193;ZNF238:-0.0628279059783;MTF1:-0.0743565604749;FOSL2:-0.0869304473916;ZNF143:-0.0908849856716;RBPJ:-0.0985467758926;HMGA1,2:-0.107752934443;EGR1..3:-0.114052591693;MAZ:-0.123110663156;FOXD3:-0.125309466393;NRF1:-0.154913870945;CDC5L:-0.164490011332;GFI1B:-0.167519926495;PITX1..3:-0.176183573347;GFI1:-0.192867427319;FOXA2:-0.198643671583;PBX1:-0.199413730349;STAT2,4,6:-0.202114858043;HNF1A:-0.210308881092;LMO2:-0.220358932428;MYOD1:-0.233639161274;FOXQ1:-0.23719901536;NFKB1_REL_RELA:-0.249978140055;MYB:-0.25028796435;E2F1..5:-0.256701711313;MZF1:-0.260768037022;EVI1:-0.263714858098;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.271220272934;FOXM1:-0.27145325671;HMX1:-0.295273564891;MEF2{A,B,C,D}:-0.329181689777;TAL1_TCF{3,4,12}:-0.330070846504;JUN:-0.364766834491;YY1:-0.370324833554;NANOG{mouse}:-0.378374591629;PRRX1,2:-0.388667891192;DMAP1_NCOR{1,2}_SMARC:-0.396019793319;ATF6:-0.411786013284;TEF:-0.413569602628;HLF:-0.419672752614;SNAI1..3:-0.420893850432;RUNX1..3:-0.420980279684;POU1F1:-0.428387584728;NFY{A,B,C}:-0.434853533345;MAFB:-0.436606037601;ESR1:-0.457635472913;RFX1:-0.482491100321;OCT4_SOX2{dimer}:-0.485838294244;IRF1,2:-0.508661814217;ATF2:-0.518883846339;PAX4:-0.535844412837;IRF7:-0.540686618305;NR1H4:-0.547211964487;FOX{D1,D2}:-0.567591555743;ZEB1:-0.584932268102;PAX2:-0.589149792006;CEBPA,B_DDIT3:-0.608930507085;FOX{F1,F2,J1}:-0.620487163888;PAX3,7:-0.648703784302;BREu{core}:-0.649889708858;TGIF1:-0.655285015756;SREBF1,2:-0.664066572709;HSF1,2:-0.675429901942;ALX4:-0.679324433524;CUX2:-0.712616987068;XBP1:-0.725097192238;ELK1,4_GABP{A,B1}:-0.728249944316;T:-0.746655621751;AIRE:-0.746911133019;EP300:-0.75494671599;NFIX:-0.761409430159;VSX1,2:-0.769142569524;NKX2-3_NKX2-5:-0.787974560189;ZBTB16:-0.798396432295;POU6F1:-0.802509368846;CDX1,2,4:-0.813729380899;NKX2-1,4:-0.819505360156;MYFfamily:-0.820686414945;NR6A1:-0.842910091575;TOPORS:-0.8654242038;FOXO1,3,4:-0.870548326254;POU5F1:-0.884121683392;HOX{A6,A7,B6,B7}:-0.913709432104;ZNF384:-0.926655158295;CREB1:-0.992362603486;NFIL3:-1.0083703822;TBX4,5:-1.0300566048;BPTF:-1.03609987284;HOXA9_MEIS1:-1.06100978981;ATF5_CREB3:-1.07822263128;FOXP3:-1.09625946764;FOXN1:-1.10660793184;ATF4:-1.13634898539;AHR_ARNT_ARNT2:-1.16089216394;HIF1A:-1.1708046916;FOXP1:-1.22972353527;HOX{A4,D4}:-1.24838324746;STAT1,3:-1.25266006764;MYBL2:-1.28688377727;RFX2..5_RFXANK_RFXAP:-1.35587201518;NKX3-1:-1.36426175634;DBP:-1.40940731027;PDX1:-1.4965760482;NKX6-1,2:-1.70404406949 | |top_motifs=RXR{A,B,G}:1.88070414889;SOX{8,9,10}:1.48325306298;TLX1..3_NFIC{dimer}:1.28076373042;AR:1.21850874214;bHLH_family:1.13941020419;NFATC1..3:1.13176977334;IKZF1:0.907730964429;TP53:0.866932006866;HIC1:0.863941089482;TFAP2{A,C}:0.833466005924;XCPE1{core}:0.812295297335;ONECUT1,2:0.79993776284;LHX3,4:0.746875477811;TFAP4:0.742935678784;PAX1,9:0.697306727688;ZNF423:0.693964647828;HBP1_HMGB_SSRP1_UBTF:0.684413793112;ZNF148:0.66215895104;GTF2A1,2:0.656032326879;ARID5B:0.617362701134;GZF1:0.613953125979;FOX{I1,J2}:0.610409388246;ETS1,2:0.610088056029;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.578709238263;EBF1:0.575234219608;GATA6:0.570189032407;PAX6:0.566120782217;LEF1_TCF7_TCF7L1,2:0.554315737978;ZBTB6:0.553323408659;ESRRA:0.552973252968;NKX2-2,8:0.486280702217;PAX8:0.470855792796;HOX{A5,B5}:0.462201999625;UFEwm:0.438680241465;PAX5:0.437812520009;SOX17:0.431369573689;SP1:0.408104150089;TFAP2B:0.399076017299;REST:0.392949273912;SPIB:0.377370912266;NR3C1:0.363862357065;ELF1,2,4:0.357680558042;SPZ1:0.348940951831;MTE{core}:0.337736397081;SOX5:0.31420063976;STAT5{A,B}:0.292568698109;ADNP_IRX_SIX_ZHX:0.270354588957;BACH2:0.259557094548;NFE2:0.243338669753;NFE2L1:0.241312007779;POU3F1..4:0.239866764934;NR5A1,2:0.238794413576;PRDM1:0.230422548167;ALX1:0.218654499424;CRX:0.206267895496;HES1:0.198994318457;PPARG:0.196501574661;NANOG:0.190064085928;TEAD1:0.188926940142;TFDP1:0.172994829367;HAND1,2:0.16685404168;RREB1:0.159300058267;ZFP161:0.154348401466;SOX2:0.151946193238;TFCP2:0.149863520206;FOS_FOS{B,L1}_JUN{B,D}:0.148591932944;SMAD1..7,9:0.138761683965;GTF2I:0.12916371604;NKX3-2:0.110869844767;GATA4:0.109245842988;TLX2:0.107637608128;HNF4A_NR2F1,2:0.107218614752;IKZF2:0.084001847209;ZIC1..3:0.0799656513752;GCM1,2:0.07840410928;EN1,2:0.0644430518016;SRF:0.0631540951379;RORA:0.0513833849953;POU2F1..3:0.0261260807821;RXRA_VDR{dimer}:0.019317354226;NHLH1,2:-0.0040683184025;PATZ1:-0.0122659992161;KLF4:-0.0133980222562;GLI1..3:-0.025168915386;FOXL1:-0.0353492902385;SPI1:-0.0383266317824;MED-1{core}:-0.0418561188424;NFE2L2:-0.0537515653276;TBP:-0.0539231994193;ZNF238:-0.0628279059783;MTF1:-0.0743565604749;FOSL2:-0.0869304473916;ZNF143:-0.0908849856716;RBPJ:-0.0985467758926;HMGA1,2:-0.107752934443;EGR1..3:-0.114052591693;MAZ:-0.123110663156;FOXD3:-0.125309466393;NRF1:-0.154913870945;CDC5L:-0.164490011332;GFI1B:-0.167519926495;PITX1..3:-0.176183573347;GFI1:-0.192867427319;FOXA2:-0.198643671583;PBX1:-0.199413730349;STAT2,4,6:-0.202114858043;HNF1A:-0.210308881092;LMO2:-0.220358932428;MYOD1:-0.233639161274;FOXQ1:-0.23719901536;NFKB1_REL_RELA:-0.249978140055;MYB:-0.25028796435;E2F1..5:-0.256701711313;MZF1:-0.260768037022;EVI1:-0.263714858098;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.271220272934;FOXM1:-0.27145325671;HMX1:-0.295273564891;MEF2{A,B,C,D}:-0.329181689777;TAL1_TCF{3,4,12}:-0.330070846504;JUN:-0.364766834491;YY1:-0.370324833554;NANOG{mouse}:-0.378374591629;PRRX1,2:-0.388667891192;DMAP1_NCOR{1,2}_SMARC:-0.396019793319;ATF6:-0.411786013284;TEF:-0.413569602628;HLF:-0.419672752614;SNAI1..3:-0.420893850432;RUNX1..3:-0.420980279684;POU1F1:-0.428387584728;NFY{A,B,C}:-0.434853533345;MAFB:-0.436606037601;ESR1:-0.457635472913;RFX1:-0.482491100321;OCT4_SOX2{dimer}:-0.485838294244;IRF1,2:-0.508661814217;ATF2:-0.518883846339;PAX4:-0.535844412837;IRF7:-0.540686618305;NR1H4:-0.547211964487;FOX{D1,D2}:-0.567591555743;ZEB1:-0.584932268102;PAX2:-0.589149792006;CEBPA,B_DDIT3:-0.608930507085;FOX{F1,F2,J1}:-0.620487163888;PAX3,7:-0.648703784302;BREu{core}:-0.649889708858;TGIF1:-0.655285015756;SREBF1,2:-0.664066572709;HSF1,2:-0.675429901942;ALX4:-0.679324433524;CUX2:-0.712616987068;XBP1:-0.725097192238;ELK1,4_GABP{A,B1}:-0.728249944316;T:-0.746655621751;AIRE:-0.746911133019;EP300:-0.75494671599;NFIX:-0.761409430159;VSX1,2:-0.769142569524;NKX2-3_NKX2-5:-0.787974560189;ZBTB16:-0.798396432295;POU6F1:-0.802509368846;CDX1,2,4:-0.813729380899;NKX2-1,4:-0.819505360156;MYFfamily:-0.820686414945;NR6A1:-0.842910091575;TOPORS:-0.8654242038;FOXO1,3,4:-0.870548326254;POU5F1:-0.884121683392;HOX{A6,A7,B6,B7}:-0.913709432104;ZNF384:-0.926655158295;CREB1:-0.992362603486;NFIL3:-1.0083703822;TBX4,5:-1.0300566048;BPTF:-1.03609987284;HOXA9_MEIS1:-1.06100978981;ATF5_CREB3:-1.07822263128;FOXP3:-1.09625946764;FOXN1:-1.10660793184;ATF4:-1.13634898539;AHR_ARNT_ARNT2:-1.16089216394;HIF1A:-1.1708046916;FOXP1:-1.22972353527;HOX{A4,D4}:-1.24838324746;STAT1,3:-1.25266006764;MYBL2:-1.28688377727;RFX2..5_RFXANK_RFXAP:-1.35587201518;NKX3-1:-1.36426175634;DBP:-1.40940731027;PDX1:-1.4965760482;NKX6-1,2:-1.70404406949 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11264-116G4;search_select_hide=table117:FF:11264-116G4 | |||
}} | }} |
Latest revision as of 16:29, 3 June 2020
Name: | Endothelial Cells - Artery, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12496 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12496
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12496
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.902 |
10 | 10 | 0.204 |
100 | 100 | 0.951 |
101 | 101 | 0.112 |
102 | 102 | 0.73 |
103 | 103 | 0.58 |
104 | 104 | 0.671 |
105 | 105 | 0.898 |
106 | 106 | 0.246 |
107 | 107 | 0.0479 |
108 | 108 | 0.303 |
109 | 109 | 0.33 |
11 | 11 | 0.257 |
110 | 110 | 0.0708 |
111 | 111 | 0.74 |
112 | 112 | 0.467 |
113 | 113 | 0.372 |
114 | 114 | 0.511 |
115 | 115 | 0.698 |
116 | 116 | 0.285 |
117 | 117 | 0.772 |
118 | 118 | 0.339 |
119 | 119 | 0.777 |
12 | 12 | 0.573 |
120 | 120 | 0.00172 |
121 | 121 | 0.609 |
122 | 122 | 0.681 |
123 | 123 | 0.00461 |
124 | 124 | 0.126 |
125 | 125 | 0.915 |
126 | 126 | 0.713 |
127 | 127 | 0.439 |
128 | 128 | 0.435 |
129 | 129 | 0.398 |
13 | 13 | 0.886 |
130 | 130 | 0.889 |
131 | 131 | 0.532 |
132 | 132 | 0.137 |
133 | 133 | 0.905 |
134 | 134 | 0.548 |
135 | 135 | 0.305 |
136 | 136 | 0.413 |
137 | 137 | 0.106 |
138 | 138 | 0.572 |
139 | 139 | 0.562 |
14 | 14 | 0.914 |
140 | 140 | 0.711 |
141 | 141 | 0.915 |
142 | 142 | 0.762 |
143 | 143 | 0.105 |
144 | 144 | 0.727 |
145 | 145 | 0.197 |
146 | 146 | 0.399 |
147 | 147 | 0.0626 |
148 | 148 | 0.442 |
149 | 149 | 0.0124 |
15 | 15 | 0.964 |
150 | 150 | 0.184 |
151 | 151 | 0.804 |
152 | 152 | 0.0194 |
153 | 153 | 0.0626 |
154 | 154 | 0.337 |
155 | 155 | 0.564 |
156 | 156 | 0.301 |
157 | 157 | 0.871 |
158 | 158 | 0.107 |
159 | 159 | 0.843 |
16 | 16 | 0.471 |
160 | 160 | 0.034 |
161 | 161 | 0.273 |
162 | 162 | 0.883 |
163 | 163 | 0.725 |
164 | 164 | 0.366 |
165 | 165 | 0.121 |
166 | 166 | 0.518 |
167 | 167 | 0.132 |
168 | 168 | 0.336 |
169 | 169 | 0.0688 |
17 | 17 | 0.261 |
18 | 18 | 0.839 |
19 | 19 | 0.283 |
2 | 2 | 0.27 |
20 | 20 | 0.559 |
21 | 21 | 0.851 |
22 | 22 | 0.247 |
23 | 23 | 0.252 |
24 | 24 | 0.731 |
25 | 25 | 0.378 |
26 | 26 | 0.803 |
27 | 27 | 0.226 |
28 | 28 | 0.182 |
29 | 29 | 0.854 |
3 | 3 | 0.841 |
30 | 30 | 0.672 |
31 | 31 | 0.65 |
32 | 32 | 0.48 |
33 | 33 | 0.361 |
34 | 34 | 0.0755 |
35 | 35 | 0.444 |
36 | 36 | 0.248 |
37 | 37 | 0.299 |
38 | 38 | 0.183 |
39 | 39 | 0.508 |
4 | 4 | 0.969 |
40 | 40 | 0.00508 |
41 | 41 | 0.0806 |
42 | 42 | 0.913 |
43 | 43 | 0.795 |
44 | 44 | 0.774 |
45 | 45 | 0.234 |
46 | 46 | 0.496 |
47 | 47 | 0.588 |
48 | 48 | 0.138 |
49 | 49 | 0.734 |
5 | 5 | 0.878 |
50 | 50 | 0.744 |
51 | 51 | 0.616 |
52 | 52 | 0.698 |
53 | 53 | 0.325 |
54 | 54 | 0.525 |
55 | 55 | 0.714 |
56 | 56 | 0.76 |
57 | 57 | 0.561 |
58 | 58 | 0.191 |
59 | 59 | 0.0624 |
6 | 6 | 0.21 |
60 | 60 | 0.868 |
61 | 61 | 0.837 |
62 | 62 | 0.672 |
63 | 63 | 0.396 |
64 | 64 | 0.68 |
65 | 65 | 0.119 |
66 | 66 | 0.605 |
67 | 67 | 0.409 |
68 | 68 | 0.0552 |
69 | 69 | 0.23 |
7 | 7 | 0.972 |
70 | 70 | 0.677 |
71 | 71 | 0.689 |
72 | 72 | 0.102 |
73 | 73 | 0.00241 |
74 | 74 | 0.348 |
75 | 75 | 0.546 |
76 | 76 | 0.409 |
77 | 77 | 0.0382 |
78 | 78 | 0.815 |
79 | 79 | 0.0138 |
8 | 8 | 0.0276 |
80 | 80 | 0.237 |
81 | 81 | 0.597 |
82 | 82 | 0.744 |
83 | 83 | 0.415 |
84 | 84 | 0.465 |
85 | 85 | 0.819 |
86 | 86 | 0.655 |
87 | 87 | 0.111 |
88 | 88 | 0.8 |
89 | 89 | 0.145 |
9 | 9 | 0.327 |
90 | 90 | 0.117 |
91 | 91 | 0.363 |
92 | 92 | 0.507 |
93 | 93 | 0.841 |
94 | 94 | 0.965 |
95 | 95 | 0.0419 |
96 | 96 | 0.35 |
97 | 97 | 0.552 |
98 | 98 | 0.372 |
99 | 99 | 0.0135 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12496
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000047 human endothelial cell of the artery sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)