FF:11266-116G6: Difference between revisions

Latest revision as of 16:29, 3 June 2020

Name:	Endothelial Cells - Thoracic, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11926
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	internal thoracic artery
dev stage	34 years old adult
sex	female
age	34
cell type	blood vessel endothelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1696
catalog number	CA308-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005486

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11926		CAGE		DRX008229		DRR009101

Accession ID Hg19

Library id		BAM		CTSS
CNhs11926		DRZ000526		DRZ001911

Accession ID Hg38

Library id		BAM		CTSS
CNhs11926		DRZ011876		DRZ013261

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005486

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10007.TGACCA		sRNA-Seq		DRX037091		DRR041457

Accession ID Hg19

Library id		BAM		CTSS
SRhi10007.TGACCA		DRZ007099

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.276
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.074
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.634
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.145
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.38
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.224
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.34
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.268
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.329
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.634
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11926

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0806
MA0003.1	MA0003.1	0.552
MA0004.1	MA0004.1	0.94
MA0006.1	MA0006.1	0.172
MA0007.1	MA0007.1	0.0636
MA0009.1	MA0009.1	0.409
MA0014.1	MA0014.1	0.484
MA0017.1	MA0017.1	0.447
MA0018.2	MA0018.2	3.33818e-8
MA0019.1	MA0019.1	0.187
MA0024.1	MA0024.1	0.0838
MA0025.1	MA0025.1	0.193
MA0027.1	MA0027.1	0.793
MA0028.1	MA0028.1	0.797
MA0029.1	MA0029.1	0.438
MA0030.1	MA0030.1	0.0382
MA0031.1	MA0031.1	0.321
MA0035.2	MA0035.2	0.0113
MA0038.1	MA0038.1	0.55
MA0039.2	MA0039.2	0.792
MA0040.1	MA0040.1	0.732
MA0041.1	MA0041.1	0.294
MA0042.1	MA0042.1	0.64
MA0043.1	MA0043.1	2.90084e-7
MA0046.1	MA0046.1	0.699
MA0047.2	MA0047.2	0.391
MA0048.1	MA0048.1	0.057
MA0050.1	MA0050.1	0.0117
MA0051.1	MA0051.1	0.575
MA0052.1	MA0052.1	0.2
MA0055.1	MA0055.1	0.00181
MA0057.1	MA0057.1	0.429
MA0058.1	MA0058.1	0.758
MA0059.1	MA0059.1	0.13
MA0060.1	MA0060.1	0.958
MA0061.1	MA0061.1	0.261
MA0062.2	MA0062.2	0.422
MA0065.2	MA0065.2	0.399
MA0066.1	MA0066.1	0.509
MA0067.1	MA0067.1	0.0234
MA0068.1	MA0068.1	0.319
MA0069.1	MA0069.1	0.00607
MA0070.1	MA0070.1	0.63
MA0071.1	MA0071.1	0.269
MA0072.1	MA0072.1	0.471
MA0073.1	MA0073.1	0.44
MA0074.1	MA0074.1	0.412
MA0076.1	MA0076.1	0.0989
MA0077.1	MA0077.1	4.75518e-5
MA0078.1	MA0078.1	0.022
MA0079.2	MA0079.2	0.453
MA0080.2	MA0080.2	0.00243
MA0081.1	MA0081.1	0.235
MA0083.1	MA0083.1	0.0929
MA0084.1	MA0084.1	0.475
MA0087.1	MA0087.1	0.0982
MA0088.1	MA0088.1	0.0201
MA0090.1	MA0090.1	0.491
MA0091.1	MA0091.1	0.874
MA0092.1	MA0092.1	0.381
MA0093.1	MA0093.1	0.917
MA0099.2	MA0099.2	1.39082e-5
MA0100.1	MA0100.1	0.805
MA0101.1	MA0101.1	0.626
MA0102.2	MA0102.2	1.79076e-4
MA0103.1	MA0103.1	0.0274
MA0104.2	MA0104.2	0.597
MA0105.1	MA0105.1	0.29
MA0106.1	MA0106.1	4.43836e-4
MA0107.1	MA0107.1	0.878
MA0108.2	MA0108.2	0.00575
MA0111.1	MA0111.1	0.125
MA0112.2	MA0112.2	0.988
MA0113.1	MA0113.1	0.54
MA0114.1	MA0114.1	0.963
MA0115.1	MA0115.1	0.607
MA0116.1	MA0116.1	0.372
MA0117.1	MA0117.1	0.443
MA0119.1	MA0119.1	0.00765
MA0122.1	MA0122.1	0.193
MA0124.1	MA0124.1	0.313
MA0125.1	MA0125.1	0.776
MA0131.1	MA0131.1	0.335
MA0135.1	MA0135.1	0.151
MA0136.1	MA0136.1	0.00875
MA0137.2	MA0137.2	0.857
MA0138.2	MA0138.2	0.6
MA0139.1	MA0139.1	0.0695
MA0140.1	MA0140.1	0.0106
MA0141.1	MA0141.1	0.131
MA0142.1	MA0142.1	0.748
MA0143.1	MA0143.1	0.411
MA0144.1	MA0144.1	0.162
MA0145.1	MA0145.1	0.487
MA0146.1	MA0146.1	0.816
MA0147.1	MA0147.1	0.192
MA0148.1	MA0148.1	0.116
MA0149.1	MA0149.1	0.0339
MA0150.1	MA0150.1	0.188
MA0152.1	MA0152.1	0.999
MA0153.1	MA0153.1	0.523
MA0154.1	MA0154.1	0.414
MA0155.1	MA0155.1	0.321
MA0156.1	MA0156.1	0.00433
MA0157.1	MA0157.1	0.621
MA0159.1	MA0159.1	0.31
MA0160.1	MA0160.1	0.995
MA0162.1	MA0162.1	0.0546
MA0163.1	MA0163.1	0.0449
MA0164.1	MA0164.1	0.699
MA0258.1	MA0258.1	0.87
MA0259.1	MA0259.1	0.977

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11926

Novel motif	Logo	P-value
1	1	0.0344
10	10	0.837
100	100	0.148
101	101	0.179
102	102	0.825
103	103	0.224
104	104	0.74
105	105	0.556
106	106	0.704
107	107	0.118
108	108	0.879
109	109	0.0772
11	11	0.125
110	110	0.00124
111	111	0.0448
112	112	0.49
113	113	0.672
114	114	0.209
115	115	0.911
116	116	0.282
117	117	0.446
118	118	0.0459
119	119	0.773
12	12	0.727
120	120	0.0122
121	121	0.285
122	122	0.527
123	123	0.145
124	124	0.62
125	125	0.949
126	126	0.839
127	127	0.581
128	128	0.422
129	129	0.211
13	13	0.341
130	130	0.821
131	131	0.287
132	132	0.314
133	133	0.877
134	134	0.748
135	135	0.414
136	136	0.191
137	137	0.503
138	138	0.699
139	139	0.831
14	14	0.135
140	140	0.862
141	141	0.0392
142	142	0.0617
143	143	0.521
144	144	0.298
145	145	0.285
146	146	0.925
147	147	0.387
148	148	0.321
149	149	0.0536
15	15	0.652
150	150	0.588
151	151	0.78
152	152	0.0744
153	153	0.273
154	154	0.465
155	155	0.31
156	156	0.187
157	157	0.141
158	158	0.231
159	159	0.29
16	16	0.946
160	160	0.0851
161	161	0.496
162	162	0.258
163	163	0.859
164	164	0.225
165	165	0.968
166	166	0.346
167	167	0.463
168	168	0.242
169	169	0.0165
17	17	0.381
18	18	0.839
19	19	0.197
2	2	0.922
20	20	0.154
21	21	0.779
22	22	0.651
23	23	0.211
24	24	0.221
25	25	1
26	26	0.574
27	27	0.556
28	28	0.38
29	29	0.783
3	3	0.76
30	30	0.469
31	31	0.694
32	32	0.422
33	33	0.129
34	34	0.167
35	35	0.427
36	36	0.0189
37	37	0.175
38	38	0.0907
39	39	0.237
4	4	0.834
40	40	0.0149
41	41	0.00484
42	42	0.202
43	43	0.959
44	44	0.816
45	45	0.863
46	46	0.319
47	47	0.193
48	48	0.144
49	49	0.91
5	5	0.648
50	50	0.947
51	51	0.551
52	52	0.296
53	53	0.753
54	54	0.933
55	55	0.805
56	56	0.676
57	57	0.185
58	58	0.601
59	59	0.358
6	6	0.59
60	60	0.514
61	61	0.654
62	62	0.574
63	63	0.769
64	64	0.916
65	65	0.757
66	66	0.0625
67	67	0.441
68	68	0.195
69	69	0.938
7	7	0.192
70	70	0.91
71	71	0.458
72	72	0.678
73	73	0.0117
74	74	0.955
75	75	0.113
76	76	0.563
77	77	0.191
78	78	0.0916
79	79	0.699
8	8	0.00713
80	80	0.355
81	81	0.576
82	82	0.64
83	83	0.813
84	84	0.308
85	85	0.746
86	86	0.448
87	87	0.267
88	88	0.856
89	89	0.95
9	9	0.432
90	90	0.476
91	91	0.596
92	92	0.36
93	93	0.769
94	94	0.966
95	95	0.073
96	96	0.173
97	97	0.344
98	98	0.329
99	99	0.00976

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11926

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000051 human thoracic endothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)
0002545 (thoracic aorta endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0005800 (segment of aorta)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001515 (thoracic aorta)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)
0000051 (human thoracic endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005486
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005486
+|accession_numbers=CAGE;DRX008229;DRR009101;DRZ000526;DRZ001911;DRZ011876;DRZ013261
+|accession_numbers_RNASeq=sRNA-Seq;DRX037091;DRR041457;DRZ007099
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0004573,UBERON:0000487,UBERON:0005800,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001515,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544,CL:0002545
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.26!237.88!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.12!129.42!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.99!97.80!ERG;;chr12:96588368..96588394,+!p3@ELK3!1.65!113.98!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.59!42.65!TCF4;;chr8:55370487..55370503,+!p1@SOX17!1.57!36.03!SOX17;;chr7:15726243..15726293,-!p2@MEOX2!1.55!34.19!MEOX2;;chr17:6926362..6926377,+!p1@BCL6B!1.54!33.46!BCL6B;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.39!23.53!ZBED1;;chr1:6479968..6479986,-!p1@HES2!1.34!20.96!HES2;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.49!MEOX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.71!TFEC;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.66!ZNF521;;chr19:13213511..13213545,-!p2@LYL1!1.19!15.81!LYL1;;chr17:46682321..46682362,-!p1@HOXB6!1.18!13.97!HOXB6;;chr6:34204921..34204939,+!p3@HMGA1!1.17!409.94!HMGA1;;chr1:214161272..214161322,+!p1@PROX1!1.17!19.49!PROX1;;chr1:47695003..47695042,-!p2@TAL1!1.13!12.50!TAL1;;chr10:94449703..94449718,+!p1@HHEX!1.12!47.43!HHEX;;chr2:177053386..177053402,+!p1@HOXD1!1.12!12.13!HOXD1;;chr15:83953397..83953425,-!p1@BNC1!1.07!12.50!BNC1;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.29!BNC2;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.93!HOXD8;;chr3:128206762..128206781,-!p2@GATA2!1.03!61.03!GATA2;;chr3:169381420..169381535,-!p1@MECOM!1.02!11.03!MECOM;;chr1:200008734..200008765,+!p2@NR5A2!1.02!9.56!NR5A2;;chr3:168864315..168864339,-!p2@MECOM!0.98!14.34!MECOM;;chr15:96874927..96874938,+!p8@NR2F2!0.94!16.91!NR2F2;;chr4:146403912..146403972,+!p5@SMAD1!0.94!9.93!SMAD1;;chr10:31288370..31288393,-!p3@ZNF438!0.94!7.72!ZNF438;;chr19:13213399..13213414,-!p6@LYL1!0.92!7.35!LYL1;;chr9:124991204..124991246,-!p1@LHX6!0.92!7.35!LHX6;;chr7:15726220..15726236,-!p4@MEOX2!0.90!6.99!MEOX2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!9.93!HMGA2;;chr5:88178983..88179012,-!p1@MEF2C!0.88!53.31!MEF2C;;chr4:146402843..146402864,+!p3@SMAD1!0.88!13.60!SMAD1;;chr15:96874012..96874042,+!p2@NR2F2!0.87!61.40!NR2F2;;chr17:46688334..46688385,-!p1@HOXB7!0.87!9.56!HOXB7;;chr17:41622925..41622976,-!p3@ETV4!0.86!9.56!ETV4;;chr18:53068982..53068993,-!p20@TCF4!0.86!6.25!TCF4;;chr6:21597765..21597779,+!p2@SOX4!0.85!52.21!SOX4;;chr20:50721803..50721857,-!p2@ZFP64!0.84!9.56!ZFP64;;chr19:53496768..53496799,-!p1@ZNF702P!0.83!9.19!ZNF702P;;chr9:14083467..14083483,-!p4@NFIB!0.82!14.71!NFIB;;chr9:14082760..14082775,-!p6@NFIB!0.82!9.56!NFIB;;chr19:13213662..13213686,-!p1@LYL1!0.82!8.46!LYL1;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.51!HOXB8;;chr5:71803177..71803255,-!p1@ZNF366!0.81!5.51!ZNF366;;chr7:27196267..27196311,-!p1@HOXA7!0.81!5.51!HOXA7;;chr9:14314131..14314147,-!p2@NFIB!0.80!31.99!NFIB;;chr15:96873984..96873999,+!p3@NR2F2!0.79!41.18!NR2F2;;chr15:96873921..96873946,+!p1@NR2F2!0.78!153.68!NR2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.93!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.90!HMGA2;;chr3:168865194..168865245,-!p3@MECOM!0.76!6.25!MECOM;;chr1:158979792..158979814,+!p2@IFI16!0.75!48.90!IFI16;;chr20:50159198..50159299,-!p1@NFATC2!0.75!6.99!NFATC2;;chr9:14314566..14314618,-!p1@NFIB!0.73!59.19!NFIB;;chr18:53177984..53178004,-!p17@TCF4!0.73!4.41!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.73!4.41!LYL1;;chr5:92918919..92918942,+!p1@NR2F1!0.71!20.59!NR2F1;;chr11:128563948..128564003,+!p1@FLI1!0.70!54.78!FLI1;;chr10:31288398..31288455,-!p2@ZNF438!0.70!4.78!ZNF438;;chr12:80084018..80084035,-!p17@PAWR!0.70!4.04!PAWR;;chr2:237077022..237077038,-!p1@GBX2!0.70!4.04!GBX2;;chr3:21792682..21792720,-!p1@ZNF385D!0.70!4.04!ZNF385D;;chr6:130339710..130339745,+!p1@L3MBTL3!0.69!34.93!L3MBTL3;;chr15:96876966..96877017,+!p12@NR2F2!0.69!5.88!NR2F2;;chr10:94449675..94449694,+!p2@HHEX!0.67!11.03!HHEX;;chr12:66218255..66218304,+!p3@HMGA2!0.67!11.03!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.66!ZFPM2;;chr15:96874145..96874166,+!p7@NR2F2!0.67!7.72!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.67!3.68!HOXB4;;chr17:46691732..46691766,-!p4@HOXB8!0.67!3.68!HOXB8;;chr7:27169801..27169844,-!p2@HOXA4!0.67!3.68!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.67!3.68!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.67!3.68!SOX17;;chr1:61869752..61869782,+!p13@NFIA!0.67!3.68!NFIA;;chr12:66218836..66218888,+!p1@HMGA2!0.66!38.97!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!0.66!5.15!HOXB7;;chr3:178789522..178789564,-!p2@ZMAT3!0.65!29.78!ZMAT3;;chr18:53257001..53257015,-!p5@TCF4!0.64!6.25!TCF4;;chr2:46524537..46524553,+!p1@EPAS1!0.63!388.62!EPAS1;;chr12:3069037..3069119,+!p2@TEAD4!0.63!12.87!TEAD4;;chr15:96874244..96874259,+!p5@NR2F2!0.63!8.82!NR2F2;;chr1:205601064..205601087,-!p4@ELK4!0.63!6.99!ELK4;;chr13:37494365..37494381,-!p1@SMAD9!0.63!6.25!SMAD9;;chr12:66218378..66218401,+!p6@HMGA2!0.63!5.51!HMGA2;;chr11:65429891..65429915,-!p7@RELA!0.63!3.31!RELA;;chr18:53068893..53068902,-!p28@TCF4!0.63!3.31!TCF4;;chr18:53068940..53068951,-!p21@TCF4!0.63!3.31!TCF4;;chr7:139741594..139741615,-!p5@PARP12!0.63!3.31!PARP12;;chr7:15726176..15726191,-!p3@MEOX2!0.63!3.31!MEOX2;;chr4:146402827..146402839,+!p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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002544;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002545;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11266-116G6
 |is_a=EFO:0002091;;FF:0000051
 |is_obsolete=
+|library_id=CNhs11926
+|library_id_phase_based=2:CNhs11926
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11266
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.TGACCA.11266
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11266
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.TGACCA.11266
 |name=Endothelial Cells - Thoracic, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11926,LSID842,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10007,,,
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@@ Line 62: / Line 82: @@
 |rna_tube_id=116G6
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10007.TGACCA
 |sample_age=34
 |sample_category=primary cells
@@ Line 85: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11266-116G6;search_select_hide=table117:FF:11266-116G6
 }}

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FF:11266-116G6: Difference between revisions

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Latest revision as of 16:29, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0