FF:11283-116I5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005435 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005435 | ||
|accession_numbers=CAGE;DRX008468;DRR009340;DRZ000765;DRZ002150;DRZ012115;DRZ013500 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037122;DRR041488;DRZ007130 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001135,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0002385,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0004237,UBERON:0004695,UBERON:0002049,UBERON:0010317,UBERON:0002111,UBERON:0007798,UBERON:0001015,UBERON:0004178,UBERON:0002204,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000383,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002539 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000168 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor1.CNhs11085.11283-116I5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor1.CNhs11085.11283-116I5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor1.CNhs11085.11283-116I5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor1.CNhs11085.11283-116I5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Aortic%252c%2520donor1.CNhs11085.11283-116I5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11283-116I5 | |id=FF:11283-116I5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000168 | ||
|is_obsolete= | |||
|library_id=CNhs11085 | |||
|library_id_phase_based=2:CNhs11085 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11283 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTAGAG.11283 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11283 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTAGAG.11283 | |||
|name=Smooth Muscle Cells - Aortic, donor1 | |name=Smooth Muscle Cells - Aortic, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11085,LSID724,release008,COMPLETED | |profile_hcage=CNhs11085,LSID724,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0481413750924522,0,0.262249430412087,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301247697585509,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.208459405178838,0,0.386733589973664,0,0,0,0,0,0,0,0,0.0340944256129325,0,0,0,0,0,6.4814677997571e-05,0,-0.0969923612426051,0,0,0.0192752662384367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.058309446725767,0,0,0,0,0,0.139668229148076,0,0,0,-0.0584468268118252,0.0160879512710995,0,0.116618893451534,0,0,0.0185835422138273,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00785610866695815,0.116618893451534,0,0,0.259995056146055,0.561508722124829,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=CA354-R10a | |rna_catalog_number=CA354-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116I5 | |rna_tube_id=116I5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.GTAGAG | |||
|sample_age=39 | |sample_age=39 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=H | |sample_ethnicity=H | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.22187501976124e-211!GO:0005737;cytoplasm;1.89630849258975e-177!GO:0043231;intracellular membrane-bound organelle;1.38367775189716e-167!GO:0043227;membrane-bound organelle;2.79591849047322e-167!GO:0043226;organelle;2.32386931614339e-166!GO:0043229;intracellular organelle;4.69895178624503e-166!GO:0044444;cytoplasmic part;1.07592082876652e-123!GO:0044422;organelle part;6.00806870506192e-115!GO:0044446;intracellular organelle part;1.44673787978474e-113!GO:0005515;protein binding;4.2716331287171e-93!GO:0044238;primary metabolic process;1.81385154533427e-81!GO:0032991;macromolecular complex;2.57653195627689e-81!GO:0044237;cellular metabolic process;1.61469226345138e-79!GO:0043170;macromolecule metabolic process;3.71929782222696e-77!GO:0030529;ribonucleoprotein complex;7.36159642398757e-71!GO:0043233;organelle lumen;1.18110391438123e-63!GO:0031974;membrane-enclosed lumen;1.18110391438123e-63!GO:0005634;nucleus;4.40119790885515e-62!GO:0044428;nuclear part;3.88864302064313e-59!GO:0003723;RNA binding;6.65837555325945e-59!GO:0019538;protein metabolic process;2.20979982125572e-52!GO:0005739;mitochondrion;4.41246174600857e-51!GO:0031090;organelle membrane;7.72090374039775e-47!GO:0044260;cellular macromolecule metabolic process;5.75380302274525e-46!GO:0044267;cellular protein metabolic process;1.44940288616152e-45!GO:0016043;cellular component organization and biogenesis;6.26995175182076e-45!GO:0006412;translation;8.24544571509794e-45!GO:0005840;ribosome;7.24194617459322e-44!GO:0015031;protein transport;1.47475618814935e-41!GO:0043234;protein complex;4.10133106226711e-41!GO:0043283;biopolymer metabolic process;5.71061043420371e-41!GO:0033036;macromolecule localization;1.92949501484922e-40!GO:0031981;nuclear lumen;2.14867028797272e-39!GO:0003735;structural constituent of ribosome;2.27440881027876e-39!GO:0045184;establishment of protein localization;6.52544762903616e-39!GO:0005829;cytosol;4.63921631568867e-38!GO:0008104;protein localization;6.27777225537877e-38!GO:0010467;gene expression;1.66296125331696e-37!GO:0009059;macromolecule biosynthetic process;1.86524516977571e-36!GO:0009058;biosynthetic process;2.40395776458911e-36!GO:0006396;RNA processing;5.08158118792679e-36!GO:0044429;mitochondrial part;1.75559749378259e-35!GO:0044249;cellular biosynthetic process;5.79153267261213e-34!GO:0033279;ribosomal subunit;6.66802380102186e-34!GO:0031967;organelle envelope;4.78569009206717e-33!GO:0031975;envelope;1.04484265134337e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.73920980738578e-32!GO:0046907;intracellular transport;4.36766999414834e-32!GO:0016071;mRNA metabolic process;1.01611488466478e-29!GO:0065003;macromolecular complex assembly;2.41208679142146e-28!GO:0006886;intracellular protein transport;5.10207239888829e-28!GO:0008380;RNA splicing;2.01842354147104e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.04065581226326e-26!GO:0006996;organelle organization and biogenesis;3.22801173266111e-26!GO:0022607;cellular component assembly;1.78788683432296e-25!GO:0006397;mRNA processing;4.38349538251045e-25!GO:0005654;nucleoplasm;6.09980757992184e-25!GO:0005740;mitochondrial envelope;2.29916078311815e-24!GO:0031966;mitochondrial membrane;5.65018690508498e-23!GO:0005783;endoplasmic reticulum;1.22608967277882e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.0303920161459e-22!GO:0008134;transcription factor binding;4.65878759489034e-22!GO:0043228;non-membrane-bound organelle;5.96706290089396e-22!GO:0043232;intracellular non-membrane-bound organelle;5.96706290089396e-22!GO:0044445;cytosolic part;2.59454587379524e-21!GO:0016462;pyrophosphatase activity;3.74284113864842e-21!GO:0044451;nucleoplasm part;4.55254839038775e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.71266421237175e-21!GO:0017111;nucleoside-triphosphatase activity;7.39449560236488e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;7.44366056217323e-21!GO:0019866;organelle inner membrane;1.24424607693837e-20!GO:0051649;establishment of cellular localization;1.92947099930582e-20!GO:0051641;cellular localization;3.16579312364582e-20!GO:0012505;endomembrane system;6.91771599565002e-20!GO:0005794;Golgi apparatus;1.13649985218629e-19!GO:0000166;nucleotide binding;1.27981109767022e-19!GO:0006119;oxidative phosphorylation;1.54407804555681e-19!GO:0005743;mitochondrial inner membrane;3.21071665237874e-19!GO:0005681;spliceosome;3.23208827273521e-19!GO:0006457;protein folding;1.45705376853425e-18!GO:0003676;nucleic acid binding;5.3576086364938e-18!GO:0006259;DNA metabolic process;1.91987411513754e-17!GO:0048770;pigment granule;1.97223065890311e-17!GO:0042470;melanosome;1.97223065890311e-17!GO:0015935;small ribosomal subunit;1.98689739742768e-17!GO:0015934;large ribosomal subunit;2.47657381933706e-17!GO:0016874;ligase activity;4.91230697604122e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.50096830183739e-16!GO:0016070;RNA metabolic process;3.30368143123472e-16!GO:0006512;ubiquitin cycle;3.39573107301514e-16!GO:0044455;mitochondrial membrane part;7.2390793538272e-16!GO:0044265;cellular macromolecule catabolic process;9.84133664530638e-16!GO:0044432;endoplasmic reticulum part;1.76821896445731e-15!GO:0005730;nucleolus;2.24870550065101e-15!GO:0006605;protein targeting;2.37657691899852e-15!GO:0043285;biopolymer catabolic process;5.07350191498945e-15!GO:0032553;ribonucleotide binding;5.90021935808645e-15!GO:0032555;purine ribonucleotide binding;5.90021935808645e-15!GO:0003712;transcription cofactor activity;7.06808102653935e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.99636655032809e-15!GO:0019941;modification-dependent protein catabolic process;1.2881292061956e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.2881292061956e-14!GO:0043412;biopolymer modification;1.57176279009001e-14!GO:0017076;purine nucleotide binding;1.78714998579538e-14!GO:0009057;macromolecule catabolic process;1.7932267026659e-14!GO:0012501;programmed cell death;2.55262259754616e-14!GO:0044257;cellular protein catabolic process;2.69485959014009e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.16188545994054e-14!GO:0005746;mitochondrial respiratory chain;4.38034280777499e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.92381821054776e-14!GO:0031980;mitochondrial lumen;4.9695354951217e-14!GO:0005759;mitochondrial matrix;4.9695354951217e-14!GO:0006915;apoptosis;5.79856546059097e-14!GO:0022618;protein-RNA complex assembly;8.02746166435167e-14!GO:0007049;cell cycle;1.14470651621666e-13!GO:0030163;protein catabolic process;1.41386537047048e-13!GO:0006366;transcription from RNA polymerase II promoter;1.51277170755311e-13!GO:0050794;regulation of cellular process;1.75279382666354e-13!GO:0048523;negative regulation of cellular process;1.80377962911524e-13!GO:0006464;protein modification process;2.32959844577938e-13!GO:0048193;Golgi vesicle transport;3.60382130047952e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.87679453164473e-13!GO:0051186;cofactor metabolic process;4.51112371457828e-13!GO:0008219;cell death;5.1340228511744e-13!GO:0016265;death;5.1340228511744e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.25693553648631e-13!GO:0051082;unfolded protein binding;9.24948563338998e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.93340389301682e-12!GO:0003954;NADH dehydrogenase activity;1.93340389301682e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.93340389301682e-12!GO:0016192;vesicle-mediated transport;3.23408155520212e-12!GO:0008135;translation factor activity, nucleic acid binding;4.19897285408806e-12!GO:0005793;ER-Golgi intermediate compartment;4.25812490021356e-12!GO:0044248;cellular catabolic process;4.37716384355606e-12!GO:0048519;negative regulation of biological process;9.76237413364272e-12!GO:0005524;ATP binding;1.27921893664839e-11!GO:0006913;nucleocytoplasmic transport;2.37172468590334e-11!GO:0032559;adenyl ribonucleotide binding;2.60472486172205e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.77612918833369e-11!GO:0043687;post-translational protein modification;3.21600168832976e-11!GO:0042775;organelle ATP synthesis coupled electron transport;4.98141721986664e-11!GO:0042773;ATP synthesis coupled electron transport;4.98141721986664e-11!GO:0005761;mitochondrial ribosome;6.13212370853129e-11!GO:0000313;organellar ribosome;6.13212370853129e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;6.13295251293753e-11!GO:0030964;NADH dehydrogenase complex (quinone);6.26305994537269e-11!GO:0045271;respiratory chain complex I;6.26305994537269e-11!GO:0005747;mitochondrial respiratory chain complex I;6.26305994537269e-11!GO:0051169;nuclear transport;7.33257225987969e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.70110777286646e-11!GO:0048522;positive regulation of cellular process;9.26731201667779e-11!GO:0030554;adenyl nucleotide binding;9.77255659437537e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.54811323981436e-10!GO:0000375;RNA splicing, via transesterification reactions;1.54811323981436e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.54811323981436e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.84886261133041e-10!GO:0003924;GTPase activity;1.94123008891925e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.02092510936892e-10!GO:0005789;endoplasmic reticulum membrane;2.35731547417107e-10!GO:0016604;nuclear body;2.68360899772884e-10!GO:0006732;coenzyme metabolic process;2.70838565236897e-10!GO:0006323;DNA packaging;2.84556550175529e-10!GO:0008639;small protein conjugating enzyme activity;3.81039622719471e-10!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.3844137109268e-10!GO:0022402;cell cycle process;5.89394861374211e-10!GO:0004842;ubiquitin-protein ligase activity;9.12842631842863e-10!GO:0003743;translation initiation factor activity;9.12842631842863e-10!GO:0043067;regulation of programmed cell death;1.04479046937465e-09!GO:0019787;small conjugating protein ligase activity;1.13712217580416e-09!GO:0050789;regulation of biological process;1.21262999942788e-09!GO:0005635;nuclear envelope;1.26240091652253e-09!GO:0042981;regulation of apoptosis;1.26585975252228e-09!GO:0017038;protein import;1.50107307075308e-09!GO:0009055;electron carrier activity;1.52522079486839e-09!GO:0009259;ribonucleotide metabolic process;1.98765514184246e-09!GO:0042254;ribosome biogenesis and assembly;2.0158070234212e-09!GO:0051276;chromosome organization and biogenesis;2.11960896309505e-09!GO:0006163;purine nucleotide metabolic process;2.81807858771945e-09!GO:0031965;nuclear membrane;3.57571986541788e-09!GO:0009150;purine ribonucleotide metabolic process;4.21506867541231e-09!GO:0016887;ATPase activity;4.51793240130762e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.69407924166965e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.21613641810092e-09!GO:0006461;protein complex assembly;5.5216398448622e-09!GO:0016563;transcription activator activity;5.98221159166908e-09!GO:0044453;nuclear membrane part;6.13265139742515e-09!GO:0000278;mitotic cell cycle;7.39251657861757e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.7895760711141e-09!GO:0006413;translational initiation;1.0133287258352e-08!GO:0006446;regulation of translational initiation;1.0719416876488e-08!GO:0043069;negative regulation of programmed cell death;1.4471919449051e-08!GO:0042623;ATPase activity, coupled;1.448692206065e-08!GO:0016881;acid-amino acid ligase activity;1.56594598315977e-08!GO:0006164;purine nucleotide biosynthetic process;1.62074886426876e-08!GO:0044431;Golgi apparatus part;1.63572542963865e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.70597345542416e-08!GO:0008565;protein transporter activity;1.71261714425426e-08!GO:0051246;regulation of protein metabolic process;2.17611040251278e-08!GO:0016564;transcription repressor activity;2.2887658421127e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.31793950268246e-08!GO:0043066;negative regulation of apoptosis;3.08601669783329e-08!GO:0009260;ribonucleotide biosynthetic process;3.08601669783329e-08!GO:0030120;vesicle coat;3.79033576911399e-08!GO:0030662;coated vesicle membrane;3.79033576911399e-08!GO:0016607;nuclear speck;3.92254648243301e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.18673597713354e-08!GO:0005788;endoplasmic reticulum lumen;5.30659345284254e-08!GO:0048518;positive regulation of biological process;5.5719120531206e-08!GO:0006916;anti-apoptosis;5.75872785743661e-08!GO:0003714;transcription corepressor activity;5.93488118590571e-08!GO:0051726;regulation of cell cycle;6.79989749093243e-08!GO:0005768;endosome;6.90455761142076e-08!GO:0009141;nucleoside triphosphate metabolic process;7.14351014900012e-08!GO:0015986;ATP synthesis coupled proton transport;7.47355956137181e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.47355956137181e-08!GO:0006333;chromatin assembly or disassembly;7.52819763302448e-08!GO:0004386;helicase activity;7.95950816244866e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.29946626064789e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.29946626064789e-08!GO:0000074;regulation of progression through cell cycle;9.31160458104483e-08!GO:0003713;transcription coactivator activity;9.39856801032753e-08!GO:0065004;protein-DNA complex assembly;1.12812771873934e-07!GO:0048475;coated membrane;1.54155056431039e-07!GO:0030117;membrane coat;1.54155056431039e-07!GO:0006399;tRNA metabolic process;1.75863497188939e-07!GO:0009056;catabolic process;1.77368638941352e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.92045506506582e-07!GO:0016023;cytoplasmic membrane-bound vesicle;2.17547236605938e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.46633101376872e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.46633101376872e-07!GO:0051170;nuclear import;2.67348961794454e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.67348961794454e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.69285023617919e-07!GO:0031988;membrane-bound vesicle;2.7755612726999e-07!GO:0046034;ATP metabolic process;3.07642919018337e-07!GO:0009060;aerobic respiration;3.15639378047289e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.15639378047289e-07!GO:0004812;aminoacyl-tRNA ligase activity;3.15639378047289e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.15639378047289e-07!GO:0008026;ATP-dependent helicase activity;3.45191850188789e-07!GO:0019829;cation-transporting ATPase activity;3.46429578670057e-07!GO:0006606;protein import into nucleus;3.49015199751124e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.49425044482697e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.43192683969562e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.43192683969562e-07!GO:0000785;chromatin;4.58316432818185e-07!GO:0005643;nuclear pore;5.02268245107306e-07!GO:0005667;transcription factor complex;8.60997620684883e-07!GO:0051188;cofactor biosynthetic process;8.71156906544629e-07!GO:0005694;chromosome;8.73504821311065e-07!GO:0043038;amino acid activation;8.73504821311065e-07!GO:0006418;tRNA aminoacylation for protein translation;8.73504821311065e-07!GO:0043039;tRNA aminoacylation;8.73504821311065e-07!GO:0005773;vacuole;1.03963161371425e-06!GO:0065007;biological regulation;1.22181692515424e-06!GO:0006754;ATP biosynthetic process;1.2425598882311e-06!GO:0006753;nucleoside phosphate metabolic process;1.2425598882311e-06!GO:0006793;phosphorus metabolic process;1.41164962514275e-06!GO:0006796;phosphate metabolic process;1.41164962514275e-06!GO:0006974;response to DNA damage stimulus;1.50207923946265e-06!GO:0045333;cellular respiration;1.54799577583333e-06!GO:0031324;negative regulation of cellular metabolic process;1.66850851311798e-06!GO:0005525;GTP binding;1.8582406180972e-06!GO:0000139;Golgi membrane;1.86699356530929e-06!GO:0016787;hydrolase activity;2.10340676119769e-06!GO:0004298;threonine endopeptidase activity;2.19654583952531e-06!GO:0044440;endosomal part;2.26925063928114e-06!GO:0010008;endosome membrane;2.26925063928114e-06!GO:0016568;chromatin modification;2.27252480955029e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.27252480955029e-06!GO:0065002;intracellular protein transport across a membrane;2.37339611342161e-06!GO:0045941;positive regulation of transcription;2.58083145905243e-06!GO:0044427;chromosomal part;2.72251707554922e-06!GO:0007243;protein kinase cascade;3.35138503915383e-06!GO:0009117;nucleotide metabolic process;4.05514138366505e-06!GO:0006364;rRNA processing;4.13901683376091e-06!GO:0046930;pore complex;4.13901683376091e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.24140929877709e-06!GO:0016072;rRNA metabolic process;5.77332483664893e-06!GO:0031410;cytoplasmic vesicle;5.9563780529357e-06!GO:0031982;vesicle;6.00890281591211e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.12638925116855e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.84854344774242e-06!GO:0016740;transferase activity;7.06777196058916e-06!GO:0016779;nucleotidyltransferase activity;8.68265798179635e-06!GO:0045893;positive regulation of transcription, DNA-dependent;8.80582297363639e-06!GO:0006334;nucleosome assembly;1.03780471344447e-05!GO:0019222;regulation of metabolic process;1.05294150556456e-05!GO:0016567;protein ubiquitination;1.05678677445994e-05!GO:0019867;outer membrane;1.05678677445994e-05!GO:0032446;protein modification by small protein conjugation;1.08014856345566e-05!GO:0000323;lytic vacuole;1.10203539514431e-05!GO:0005764;lysosome;1.10203539514431e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.10203539514431e-05!GO:0016310;phosphorylation;1.12251628037141e-05!GO:0005770;late endosome;1.25037237319985e-05!GO:0051427;hormone receptor binding;1.27766450622212e-05!GO:0031252;leading edge;1.29030004625344e-05!GO:0045259;proton-transporting ATP synthase complex;1.31215603639357e-05!GO:0006099;tricarboxylic acid cycle;1.34025475307279e-05!GO:0046356;acetyl-CoA catabolic process;1.34025475307279e-05!GO:0031968;organelle outer membrane;1.38061088825725e-05!GO:0031497;chromatin assembly;1.4712881645069e-05!GO:0032561;guanyl ribonucleotide binding;1.49588307299223e-05!GO:0019001;guanyl nucleotide binding;1.49588307299223e-05!GO:0051187;cofactor catabolic process;1.57048005684983e-05!GO:0005798;Golgi-associated vesicle;1.5730058291138e-05!GO:0003697;single-stranded DNA binding;1.90221856794642e-05!GO:0045786;negative regulation of progression through cell cycle;1.95667009146826e-05!GO:0005905;coated pit;1.95850768694681e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.95850768694681e-05!GO:0009892;negative regulation of metabolic process;1.99149857460059e-05!GO:0009108;coenzyme biosynthetic process;2.06695215864353e-05!GO:0009719;response to endogenous stimulus;2.39570222581792e-05!GO:0016491;oxidoreductase activity;2.42877410957404e-05!GO:0035257;nuclear hormone receptor binding;2.66727726984046e-05!GO:0006084;acetyl-CoA metabolic process;2.9773427307503e-05!GO:0008361;regulation of cell size;2.9773427307503e-05!GO:0003724;RNA helicase activity;3.11974409823541e-05!GO:0030867;rough endoplasmic reticulum membrane;3.36820523046483e-05!GO:0050657;nucleic acid transport;3.36820523046483e-05!GO:0051236;establishment of RNA localization;3.36820523046483e-05!GO:0050658;RNA transport;3.36820523046483e-05!GO:0007067;mitosis;3.44637565855698e-05!GO:0000087;M phase of mitotic cell cycle;3.51971535774018e-05!GO:0006752;group transfer coenzyme metabolic process;3.52205029680734e-05!GO:0009109;coenzyme catabolic process;3.74222575883235e-05!GO:0006403;RNA localization;3.7501483598756e-05!GO:0016049;cell growth;3.90111564321894e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.98842630842626e-05!GO:0007005;mitochondrion organization and biogenesis;4.04459194094483e-05!GO:0005741;mitochondrial outer membrane;4.58322678862781e-05!GO:0000151;ubiquitin ligase complex;4.65881931489164e-05!GO:0005769;early endosome;4.66447927307664e-05!GO:0009967;positive regulation of signal transduction;4.70706284548725e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.05447213852552e-05!GO:0001558;regulation of cell growth;5.3658120295155e-05!GO:0006613;cotranslational protein targeting to membrane;5.41578183955641e-05!GO:0043623;cellular protein complex assembly;5.57644813926804e-05!GO:0006281;DNA repair;6.02400224999843e-05!GO:0000245;spliceosome assembly;6.50508373981606e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.71594567763354e-05!GO:0022403;cell cycle phase;6.84091803761698e-05!GO:0051789;response to protein stimulus;7.0140921855377e-05!GO:0006986;response to unfolded protein;7.0140921855377e-05!GO:0048468;cell development;7.41811514038192e-05!GO:0016481;negative regulation of transcription;7.43015901967602e-05!GO:0006260;DNA replication;8.07506729275737e-05!GO:0045454;cell redox homeostasis;0.000101311370913615!GO:0005048;signal sequence binding;0.000102110949324994!GO:0043566;structure-specific DNA binding;0.00010520132950936!GO:0030029;actin filament-based process;0.000112399415491715!GO:0016853;isomerase activity;0.00013562316396858!GO:0033116;ER-Golgi intermediate compartment membrane;0.00013844011341358!GO:0019843;rRNA binding;0.000156185841212885!GO:0008654;phospholipid biosynthetic process;0.000180347725573458!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000216189540678436!GO:0051301;cell division;0.000246694617121097!GO:0005762;mitochondrial large ribosomal subunit;0.000270821080541273!GO:0000315;organellar large ribosomal subunit;0.000270821080541273!GO:0006091;generation of precursor metabolites and energy;0.000361452490214402!GO:0030663;COPI coated vesicle membrane;0.000363821821153505!GO:0030126;COPI vesicle coat;0.000363821821153505!GO:0019899;enzyme binding;0.000371144362262484!GO:0006612;protein targeting to membrane;0.000413908147600694!GO:0005791;rough endoplasmic reticulum;0.000437815089394865!GO:0007264;small GTPase mediated signal transduction;0.000446706573575424!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000486290726877559!GO:0009893;positive regulation of metabolic process;0.000532662537023418!GO:0005885;Arp2/3 protein complex;0.000534899206641528!GO:0008186;RNA-dependent ATPase activity;0.000546489114484097!GO:0009615;response to virus;0.000563860941099974!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000584063560711341!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00061950931975477!GO:0016859;cis-trans isomerase activity;0.000629724744554251!GO:0015980;energy derivation by oxidation of organic compounds;0.000660079747094347!GO:0065009;regulation of a molecular function;0.000682044492606701!GO:0030659;cytoplasmic vesicle membrane;0.000703725636947681!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000722710959932602!GO:0051028;mRNA transport;0.000804059345154655!GO:0043021;ribonucleoprotein binding;0.000824990154491079!GO:0048471;perinuclear region of cytoplasm;0.000825546273371797!GO:0051329;interphase of mitotic cell cycle;0.000829891943567808!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000841463370424094!GO:0030137;COPI-coated vesicle;0.000942853761233154!GO:0015630;microtubule cytoskeleton;0.00100938931569003!GO:0007010;cytoskeleton organization and biogenesis;0.0010119882964137!GO:0016044;membrane organization and biogenesis;0.00106116396208201!GO:0030133;transport vesicle;0.00108623909257729!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111585296567973!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00126126883677968!GO:0051920;peroxiredoxin activity;0.00126739965478006!GO:0004004;ATP-dependent RNA helicase activity;0.0014729586168164!GO:0008250;oligosaccharyl transferase complex;0.00150021067670749!GO:0040008;regulation of growth;0.00152900228433921!GO:0031323;regulation of cellular metabolic process;0.00154059603828455!GO:0044262;cellular carbohydrate metabolic process;0.00160161750860495!GO:0003899;DNA-directed RNA polymerase activity;0.00168342353747437!GO:0008283;cell proliferation;0.00168779863371061!GO:0044433;cytoplasmic vesicle part;0.00179164421217306!GO:0009165;nucleotide biosynthetic process;0.00189362078000168!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00198919311520288!GO:0000786;nucleosome;0.00202466394157056!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00202466394157056!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00202466394157056!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00206942845499123!GO:0000059;protein import into nucleus, docking;0.00216715042631532!GO:0046474;glycerophospholipid biosynthetic process;0.00223746502564996!GO:0051168;nuclear export;0.00231668824639569!GO:0004576;oligosaccharyl transferase activity;0.00234046891263519!GO:0042802;identical protein binding;0.00236479533432458!GO:0045892;negative regulation of transcription, DNA-dependent;0.00242309939521921!GO:0030134;ER to Golgi transport vesicle;0.00254203965708162!GO:0006414;translational elongation;0.00254203965708162!GO:0051540;metal cluster binding;0.00258037280757795!GO:0051536;iron-sulfur cluster binding;0.00258037280757795!GO:0008632;apoptotic program;0.00258037280757795!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0027571098378956!GO:0015399;primary active transmembrane transporter activity;0.0027571098378956!GO:0051252;regulation of RNA metabolic process;0.00281342830762236!GO:0051325;interphase;0.00286964373856987!GO:0030658;transport vesicle membrane;0.00289953316223561!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00294215038371866!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00294215038371866!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00294215038371866!GO:0000314;organellar small ribosomal subunit;0.00297513549046331!GO:0005763;mitochondrial small ribosomal subunit;0.00297513549046331!GO:0008139;nuclear localization sequence binding;0.00311298326331699!GO:0030176;integral to endoplasmic reticulum membrane;0.00311896390572602!GO:0006350;transcription;0.0032320384022427!GO:0006891;intra-Golgi vesicle-mediated transport;0.00326061149689517!GO:0043488;regulation of mRNA stability;0.00333574846294332!GO:0043487;regulation of RNA stability;0.00333574846294332!GO:0018196;peptidyl-asparagine modification;0.00333574846294332!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00333574846294332!GO:0031325;positive regulation of cellular metabolic process;0.00339784816360075!GO:0006509;membrane protein ectodomain proteolysis;0.00340878425504186!GO:0033619;membrane protein proteolysis;0.00340878425504186!GO:0030132;clathrin coat of coated pit;0.00348574641277769!GO:0030521;androgen receptor signaling pathway;0.00351527650826675!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00368939874708979!GO:0030880;RNA polymerase complex;0.00373196326484472!GO:0051087;chaperone binding;0.00378300992920419!GO:0009966;regulation of signal transduction;0.00393745283260615!GO:0043433;negative regulation of transcription factor activity;0.00398857307980957!GO:0030118;clathrin coat;0.00416478243366794!GO:0030518;steroid hormone receptor signaling pathway;0.00425945775678103!GO:0017166;vinculin binding;0.00434248968550392!GO:0003682;chromatin binding;0.00445508604821595!GO:0030127;COPII vesicle coat;0.00445508604821595!GO:0012507;ER to Golgi transport vesicle membrane;0.00445508604821595!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00456712406903938!GO:0012506;vesicle membrane;0.00468514434385242!GO:0043681;protein import into mitochondrion;0.00474572098054391!GO:0005774;vacuolar membrane;0.00480838121560645!GO:0030027;lamellipodium;0.00490948584167041!GO:0048487;beta-tubulin binding;0.00490948584167041!GO:0008092;cytoskeletal protein binding;0.00492364161588056!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00492364161588056!GO:0006401;RNA catabolic process;0.00497010038127147!GO:0043065;positive regulation of apoptosis;0.00516138644362439!GO:0043068;positive regulation of programmed cell death;0.00519548106797889!GO:0045792;negative regulation of cell size;0.00519548106797889!GO:0051270;regulation of cell motility;0.00527427219426154!GO:0006950;response to stress;0.00527969167369615!GO:0006402;mRNA catabolic process;0.00532400545755526!GO:0031072;heat shock protein binding;0.00559147216321934!GO:0008047;enzyme activator activity;0.00575518599506391!GO:0000279;M phase;0.00603070665517664!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00607457609726847!GO:0007006;mitochondrial membrane organization and biogenesis;0.00610956301307838!GO:0035258;steroid hormone receptor binding;0.00611986888897265!GO:0048500;signal recognition particle;0.00646791491630942!GO:0046489;phosphoinositide biosynthetic process;0.00649008556967939!GO:0043284;biopolymer biosynthetic process;0.00666628871148077!GO:0003702;RNA polymerase II transcription factor activity;0.00688898556305113!GO:0010468;regulation of gene expression;0.00703619511047808!GO:0030308;negative regulation of cell growth;0.00706535605798528!GO:0006417;regulation of translation;0.00738981120913621!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0075212711846273!GO:0000428;DNA-directed RNA polymerase complex;0.0075212711846273!GO:0051101;regulation of DNA binding;0.00769257408060375!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0078957558587789!GO:0030660;Golgi-associated vesicle membrane;0.00798275158648312!GO:0004177;aminopeptidase activity;0.00806497870630966!GO:0016363;nuclear matrix;0.00844504443570811!GO:0007265;Ras protein signal transduction;0.00858059504752328!GO:0016197;endosome transport;0.00870970600561114!GO:0006740;NADPH regeneration;0.00915533274816677!GO:0006098;pentose-phosphate shunt;0.00915533274816677!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00923883077649281!GO:0007242;intracellular signaling cascade;0.00923924667305628!GO:0001952;regulation of cell-matrix adhesion;0.00958970941186461!GO:0031589;cell-substrate adhesion;0.00988395285345411!GO:0043492;ATPase activity, coupled to movement of substances;0.010007147969208!GO:0006352;transcription initiation;0.010007147969208!GO:0006595;polyamine metabolic process;0.0105075192851243!GO:0005813;centrosome;0.0107750949096958!GO:0022408;negative regulation of cell-cell adhesion;0.0109151366238578!GO:0005862;muscle thin filament tropomyosin;0.01103226263776!GO:0006383;transcription from RNA polymerase III promoter;0.011253793264345!GO:0033673;negative regulation of kinase activity;0.0112913902375449!GO:0006469;negative regulation of protein kinase activity;0.0112913902375449!GO:0008180;signalosome;0.0113236500880323!GO:0007050;cell cycle arrest;0.0114719710074651!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0114719710074651!GO:0006626;protein targeting to mitochondrion;0.011840269149478!GO:0044437;vacuolar part;0.0119829675803752!GO:0044452;nucleolar part;0.0125740864717778!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0126601637667715!GO:0051059;NF-kappaB binding;0.0127026401065405!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0128231850728278!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0128231850728278!GO:0007160;cell-matrix adhesion;0.0129595286084773!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0136089157304904!GO:0003729;mRNA binding;0.0137528360091706!GO:0001953;negative regulation of cell-matrix adhesion;0.0139102847872712!GO:0003711;transcription elongation regulator activity;0.0141710646410914!GO:0046467;membrane lipid biosynthetic process;0.0147796342480903!GO:0000082;G1/S transition of mitotic cell cycle;0.0152369972618738!GO:0031543;peptidyl-proline dioxygenase activity;0.0152680990091812!GO:0030119;AP-type membrane coat adaptor complex;0.0152977492381502!GO:0051098;regulation of binding;0.0157100142056179!GO:0035035;histone acetyltransferase binding;0.0157100142056179!GO:0006979;response to oxidative stress;0.0157314238867932!GO:0040011;locomotion;0.0158471612416432!GO:0005096;GTPase activator activity;0.0162989155068536!GO:0005765;lysosomal membrane;0.0163019704216886!GO:0030522;intracellular receptor-mediated signaling pathway;0.0163978068032276!GO:0006007;glucose catabolic process;0.0169507913664323!GO:0008312;7S RNA binding;0.0169507913664323!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0170243678352096!GO:0031901;early endosome membrane;0.0170888779137596!GO:0008637;apoptotic mitochondrial changes;0.0171764735376436!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0173279473718967!GO:0045047;protein targeting to ER;0.0173279473718967!GO:0008538;proteasome activator activity;0.0174620009491423!GO:0009889;regulation of biosynthetic process;0.0177533066934127!GO:0007040;lysosome organization and biogenesis;0.0177965799881276!GO:0051348;negative regulation of transferase activity;0.0178680401531425!GO:0031902;late endosome membrane;0.0179263956453429!GO:0045936;negative regulation of phosphate metabolic process;0.0180012734214746!GO:0022415;viral reproductive process;0.0180793055136171!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0181496857424855!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0184919263418996!GO:0022890;inorganic cation transmembrane transporter activity;0.0190760420516172!GO:0005815;microtubule organizing center;0.0192551628179661!GO:0005869;dynactin complex;0.0197538156082324!GO:0005832;chaperonin-containing T-complex;0.0200392325338742!GO:0031418;L-ascorbic acid binding;0.0200392325338742!GO:0043022;ribosome binding;0.0202327159815528!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0202327159815528!GO:0040012;regulation of locomotion;0.0203294993111532!GO:0045045;secretory pathway;0.0206132219007255!GO:0031529;ruffle organization and biogenesis;0.0207649124189975!GO:0007162;negative regulation of cell adhesion;0.0208599539494185!GO:0046426;negative regulation of JAK-STAT cascade;0.0210424890775818!GO:0046966;thyroid hormone receptor binding;0.0210882542382845!GO:0030131;clathrin adaptor complex;0.0210882542382845!GO:0015992;proton transport;0.0211732294734691!GO:0001666;response to hypoxia;0.0214650298794546!GO:0031326;regulation of cellular biosynthetic process;0.0218632037483997!GO:0031272;regulation of pseudopodium formation;0.0218632037483997!GO:0031269;pseudopodium formation;0.0218632037483997!GO:0031344;regulation of cell projection organization and biogenesis;0.0218632037483997!GO:0031268;pseudopodium organization and biogenesis;0.0218632037483997!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0218632037483997!GO:0031274;positive regulation of pseudopodium formation;0.0218632037483997!GO:0000049;tRNA binding;0.0218632037483997!GO:0006607;NLS-bearing substrate import into nucleus;0.0225305202545171!GO:0032906;transforming growth factor-beta2 production;0.0229831877445138!GO:0032909;regulation of transforming growth factor-beta2 production;0.0229831877445138!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0229903619193588!GO:0050790;regulation of catalytic activity;0.0230380090184786!GO:0005586;collagen type III;0.0231374095989481!GO:0006650;glycerophospholipid metabolic process;0.0233422853275235!GO:0006354;RNA elongation;0.0233422853275235!GO:0004722;protein serine/threonine phosphatase activity;0.0233422853275235!GO:0005819;spindle;0.02352411044741!GO:0016251;general RNA polymerase II transcription factor activity;0.0237147017537636!GO:0030041;actin filament polymerization;0.0239085248229607!GO:0030125;clathrin vesicle coat;0.0239085248229607!GO:0030665;clathrin coated vesicle membrane;0.0239085248229607!GO:0006818;hydrogen transport;0.0242173951296054!GO:0007033;vacuole organization and biogenesis;0.0249317488838242!GO:0000339;RNA cap binding;0.0254490180550088!GO:0006897;endocytosis;0.0254490180550088!GO:0010324;membrane invagination;0.0254490180550088!GO:0030032;lamellipodium biogenesis;0.025454962828384!GO:0030145;manganese ion binding;0.02597827043214!GO:0019798;procollagen-proline dioxygenase activity;0.0268138578934536!GO:0006892;post-Golgi vesicle-mediated transport;0.0269217484882621!GO:0008033;tRNA processing;0.0269238959133292!GO:0046979;TAP2 binding;0.0269475965620081!GO:0046977;TAP binding;0.0269475965620081!GO:0046978;TAP1 binding;0.0269475965620081!GO:0006458;'de novo' protein folding;0.0278452193626868!GO:0051084;'de novo' posttranslational protein folding;0.0278452193626868!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0278688074003284!GO:0045926;negative regulation of growth;0.0280155667526944!GO:0051539;4 iron, 4 sulfur cluster binding;0.0285277519672726!GO:0005637;nuclear inner membrane;0.0286907723978633!GO:0008022;protein C-terminus binding;0.0288416410158448!GO:0001726;ruffle;0.0294258500004612!GO:0046822;regulation of nucleocytoplasmic transport;0.0297464684726947!GO:0051128;regulation of cellular component organization and biogenesis;0.0301015246652083!GO:0048660;regulation of smooth muscle cell proliferation;0.03012879006133!GO:0031301;integral to organelle membrane;0.0301592808743401!GO:0000209;protein polyubiquitination;0.030281722340578!GO:0003756;protein disulfide isomerase activity;0.0303999606492088!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0303999606492088!GO:0004674;protein serine/threonine kinase activity;0.0306182563879126!GO:0006778;porphyrin metabolic process;0.0310324180816235!GO:0033013;tetrapyrrole metabolic process;0.0310324180816235!GO:0006839;mitochondrial transport;0.031431637755052!GO:0006611;protein export from nucleus;0.0314945446397487!GO:0042168;heme metabolic process;0.0318131965432521!GO:0006338;chromatin remodeling;0.0322552486929439!GO:0016126;sterol biosynthetic process;0.0327976619539111!GO:0051287;NAD binding;0.0329097316453369!GO:0005684;U2-dependent spliceosome;0.0329097316453369!GO:0050681;androgen receptor binding;0.0351921918279032!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0354015517529556!GO:0008287;protein serine/threonine phosphatase complex;0.0355782189642208!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.036019907879363!GO:0016584;nucleosome positioning;0.0367080278833809!GO:0016860;intramolecular oxidoreductase activity;0.0370778705323745!GO:0004680;casein kinase activity;0.0372177114232307!GO:0007021;tubulin folding;0.0372177114232307!GO:0031124;mRNA 3'-end processing;0.0372221166600759!GO:0051090;regulation of transcription factor activity;0.0373170456120161!GO:0046483;heterocycle metabolic process;0.0373316430073901!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0373543859841!GO:0032507;maintenance of cellular protein localization;0.0381512719375929!GO:0015631;tubulin binding;0.0382569927111339!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0385440205847124!GO:0042326;negative regulation of phosphorylation;0.0388073968042309!GO:0003746;translation elongation factor activity;0.0388150880144143!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0390434771431576!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0390434771431576!GO:0008154;actin polymerization and/or depolymerization;0.0390809479430928!GO:0030334;regulation of cell migration;0.0397237248132019!GO:0001516;prostaglandin biosynthetic process;0.0397697717033456!GO:0046457;prostanoid biosynthetic process;0.0397697717033456!GO:0005092;GDP-dissociation inhibitor activity;0.0398320974253959!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0398973380396437!GO:0015002;heme-copper terminal oxidase activity;0.0398973380396437!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0398973380396437!GO:0004129;cytochrome-c oxidase activity;0.0398973380396437!GO:0016272;prefoldin complex;0.0398973380396437!GO:0000118;histone deacetylase complex;0.0401070704489061!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0408603751349568!GO:0008234;cysteine-type peptidase activity;0.0409453535137611!GO:0008243;plasminogen activator activity;0.0411422106618069!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0413589319471396!GO:0016301;kinase activity;0.0417768860412159!GO:0006376;mRNA splice site selection;0.0420142628286327!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0420142628286327!GO:0006739;NADP metabolic process;0.0420305464599288!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0422364917857561!GO:0006405;RNA export from nucleus;0.0425959438322053!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0430532471626862!GO:0006289;nucleotide-excision repair;0.0431292821050612!GO:0006082;organic acid metabolic process;0.0433173609664161!GO:0008610;lipid biosynthetic process;0.0439802017271333!GO:0031371;ubiquitin conjugating enzyme complex;0.044591084894896!GO:0006984;ER-nuclear signaling pathway;0.0446723908591943!GO:0019752;carboxylic acid metabolic process;0.0449279148730139!GO:0030433;ER-associated protein catabolic process;0.0449782152746243!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0449782152746243!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0449782152746243!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0449782152746243!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0449782152746243!GO:0030384;phosphoinositide metabolic process;0.0450884112554445!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.046438002917543!GO:0030911;TPR domain binding;0.0465813717016184!GO:0005657;replication fork;0.0467058304935639!GO:0003678;DNA helicase activity;0.0467755110395188!GO:0006693;prostaglandin metabolic process;0.0468487742763505!GO:0006692;prostanoid metabolic process;0.0468487742763505!GO:0009112;nucleobase metabolic process;0.0468879369584092!GO:0005938;cell cortex;0.0470645924750419!GO:0007030;Golgi organization and biogenesis;0.0471110794300216!GO:0005874;microtubule;0.047305383638698!GO:0003690;double-stranded DNA binding;0.0473818172227118!GO:0006497;protein amino acid lipidation;0.0478059246866546!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0493394760536453!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0497037653825596!GO:0010257;NADH dehydrogenase complex assembly;0.0497037653825596!GO:0033108;mitochondrial respiratory chain complex assembly;0.0497037653825596!GO:0046519;sphingoid metabolic process;0.0497037653825596!GO:0048144;fibroblast proliferation;0.0497037653825596!GO:0048145;regulation of fibroblast proliferation;0.0497037653825596!GO:0006378;mRNA polyadenylation;0.0497037653825596!GO:0001872;zymosan binding;0.0497037653825596!GO:0001878;response to yeast;0.0497037653825596 | |||
|sample_id=11283 | |sample_id=11283 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=aorta | |sample_tissue=aorta | ||
|top_motifs=GTF2A1,2:1.80379434481;IRF7:1.45353465166;TLX1..3_NFIC{dimer}:1.35772572773;HES1:1.33762412602;ZNF238:1.27958645555;HMX1:1.21578277369;EN1,2:1.21234755168;IRF1,2:1.2028746359;LHX3,4:1.15179491893;ALX4:1.13682731277;HIF1A:1.13645624469;MYBL2:1.11231770191;ZNF148:1.0368835401;CRX:1.03418958842;NKX3-1:1.0313642928;PPARG:1.02223606783;XCPE1{core}:0.969908110263;RXR{A,B,G}:0.957532869508;EBF1:0.93344080854;ONECUT1,2:0.930344869309;GLI1..3:0.900564027691;MED-1{core}:0.887990257191;GTF2I:0.878676858407;HSF1,2:0.851154439993;HOX{A5,B5}:0.844807261016;TFCP2:0.844092079969;IKZF1:0.838274578718;CDC5L:0.820774615417;POU5F1:0.81696718109;MZF1:0.760734970366;NR6A1:0.75637816002;TEAD1:0.738985832803;GCM1,2:0.72585481741;HAND1,2:0.701079329217;GFI1B:0.687511965235;POU2F1..3:0.684071065215;MAFB:0.674715190379;ZBTB6:0.674377975818;AHR_ARNT_ARNT2:0.653644080378;SPZ1:0.649175475517;EVI1:0.639013013835;ZIC1..3:0.638726735924;TP53:0.616288256069;MAZ:0.588298132363;PAX8:0.580021121487;TBP:0.573725060902;SRF:0.564196297796;NR3C1:0.564005807937;STAT2,4,6:0.553979219924;CEBPA,B_DDIT3:0.551628713533;PRDM1:0.539474989999;NKX2-2,8:0.536836792175;NR1H4:0.517157160246;NFATC1..3:0.510154567759;NANOG{mouse}:0.508614103898;TFAP2{A,C}:0.46173028963;TFDP1:0.455672591857;PAX1,9:0.442337863348;POU3F1..4:0.414407902672;RREB1:0.402385509893;TFAP2B:0.40120812224;FOS_FOS{B,L1}_JUN{B,D}:0.398574689077;EP300:0.391625996568;PBX1:0.385711586355;MTE{core}:0.384262016487;GATA4:0.37788208696;NFE2L2:0.374063233749;GZF1:0.369531395171;SOX{8,9,10}:0.366885386311;ATF6:0.36215969614;SOX17:0.358926324034;PATZ1:0.353011676441;YY1:0.335858390866;PAX3,7:0.324005934865;MTF1:0.320009742089;BACH2:0.316881215519;NHLH1,2:0.314048263194;ZNF423:0.29506407678;UFEwm:0.293229532166;HBP1_HMGB_SSRP1_UBTF:0.283161947381;FOX{I1,J2}:0.272502348246;TFAP4:0.271104782965;HIC1:0.266146879787;NFE2L1:0.260281337718;ADNP_IRX_SIX_ZHX:0.256377296587;AR:0.254342704926;ESRRA:0.251368090187;ALX1:0.246507225934;TAL1_TCF{3,4,12}:0.244209719352;CDX1,2,4:0.208036442343;SMAD1..7,9:0.205767661893;NFIX:0.204361710241;FOXL1:0.183461433021;NFKB1_REL_RELA:0.182102814223;REST:0.165652316664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.158919659239;EGR1..3:0.156305347868;MYFfamily:0.151939134356;NFE2:0.147210815001;HLF:0.1389222135;bHLH_family:0.136072403298;FOSL2:0.132426579288;NKX3-2:0.130906409873;KLF4:0.123830594395;XBP1:0.110373167522;STAT5{A,B}:0.10135536988;RXRA_VDR{dimer}:0.0995047265181;PRRX1,2:0.0988326196005;TOPORS:0.0815843268944;HNF1A:0.0712324310239;ZNF384:0.0566224931582;HOXA9_MEIS1:0.0525386101067;AIRE:0.0484173142036;JUN:0.0446065687473;PAX2:0.036560007059;SOX2:0.028954288656;POU1F1:-0.0242633311748;LMO2:-0.0302184416431;MEF2{A,B,C,D}:-0.0352776899486;ETS1,2:-0.0469308464366;VSX1,2:-0.0668845344287;SP1:-0.0953766486682;DMAP1_NCOR{1,2}_SMARC:-0.0976269039372;RUNX1..3:-0.102277935062;LEF1_TCF7_TCF7L1,2:-0.124414813015;ELF1,2,4:-0.13076741157;POU6F1:-0.134371409999;GFI1:-0.142585310893;HNF4A_NR2F1,2:-0.161095151373;NFIL3:-0.164472762289;TLX2:-0.16701921968;ZFP161:-0.171341753199;HMGA1,2:-0.172563507164;HOX{A6,A7,B6,B7}:-0.177426813002;MYB:-0.179313940234;TGIF1:-0.187594335485;ATF2:-0.1886608391;PAX5:-0.193699089768;DBP:-0.200197592169;ESR1:-0.200624166729;NR5A1,2:-0.227861521282;FOX{F1,F2,J1}:-0.229938085893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.242518554851;SPIB:-0.242681644371;SPI1:-0.285238452614;GATA6:-0.288569587692;ELK1,4_GABP{A,B1}:-0.326309471505;NANOG:-0.328253112439;RFX1:-0.329238837932;E2F1..5:-0.347844824855;RORA:-0.349870718299;NKX2-1,4:-0.362895119473;BPTF:-0.381547956684;ATF5_CREB3:-0.418797550545;ZNF143:-0.447348559113;FOXO1,3,4:-0.456426602385;SREBF1,2:-0.460869132194;NFY{A,B,C}:-0.46925218184;FOXD3:-0.472996575862;PITX1..3:-0.489900028517;NRF1:-0.490857931739;PDX1:-0.513505412259;NKX2-3_NKX2-5:-0.522913160498;FOX{D1,D2}:-0.527427503535;BREu{core}:-0.53019172967;FOXP3:-0.532366286391;TBX4,5:-0.533208485002;ARID5B:-0.554640733547;NKX6-1,2:-0.558871672785;FOXM1:-0.582392239009;CUX2:-0.590233820252;HOX{A4,D4}:-0.60578227968;SNAI1..3:-0.63217208313;SOX5:-0.638122570294;FOXQ1:-0.645962592281;FOXN1:-0.699922339939;RBPJ:-0.749690199684;OCT4_SOX2{dimer}:-0.754413174509;ATF4:-0.76119456755;IKZF2:-0.771741377426;PAX6:-0.813769204983;FOXP1:-0.876037729186;FOXA2:-0.884407382416;T:-0.899735953289;MYOD1:-0.922708590317;ZEB1:-0.956625562871;RFX2..5_RFXANK_RFXAP:-0.95798447387;STAT1,3:-0.996503577889;TEF:-1.03793361426;CREB1:-1.04503569749;PAX4:-1.11716443076;ZBTB16:-1.19226789899 | |top_motifs=GTF2A1,2:1.80379434481;IRF7:1.45353465166;TLX1..3_NFIC{dimer}:1.35772572773;HES1:1.33762412602;ZNF238:1.27958645555;HMX1:1.21578277369;EN1,2:1.21234755168;IRF1,2:1.2028746359;LHX3,4:1.15179491893;ALX4:1.13682731277;HIF1A:1.13645624469;MYBL2:1.11231770191;ZNF148:1.0368835401;CRX:1.03418958842;NKX3-1:1.0313642928;PPARG:1.02223606783;XCPE1{core}:0.969908110263;RXR{A,B,G}:0.957532869508;EBF1:0.93344080854;ONECUT1,2:0.930344869309;GLI1..3:0.900564027691;MED-1{core}:0.887990257191;GTF2I:0.878676858407;HSF1,2:0.851154439993;HOX{A5,B5}:0.844807261016;TFCP2:0.844092079969;IKZF1:0.838274578718;CDC5L:0.820774615417;POU5F1:0.81696718109;MZF1:0.760734970366;NR6A1:0.75637816002;TEAD1:0.738985832803;GCM1,2:0.72585481741;HAND1,2:0.701079329217;GFI1B:0.687511965235;POU2F1..3:0.684071065215;MAFB:0.674715190379;ZBTB6:0.674377975818;AHR_ARNT_ARNT2:0.653644080378;SPZ1:0.649175475517;EVI1:0.639013013835;ZIC1..3:0.638726735924;TP53:0.616288256069;MAZ:0.588298132363;PAX8:0.580021121487;TBP:0.573725060902;SRF:0.564196297796;NR3C1:0.564005807937;STAT2,4,6:0.553979219924;CEBPA,B_DDIT3:0.551628713533;PRDM1:0.539474989999;NKX2-2,8:0.536836792175;NR1H4:0.517157160246;NFATC1..3:0.510154567759;NANOG{mouse}:0.508614103898;TFAP2{A,C}:0.46173028963;TFDP1:0.455672591857;PAX1,9:0.442337863348;POU3F1..4:0.414407902672;RREB1:0.402385509893;TFAP2B:0.40120812224;FOS_FOS{B,L1}_JUN{B,D}:0.398574689077;EP300:0.391625996568;PBX1:0.385711586355;MTE{core}:0.384262016487;GATA4:0.37788208696;NFE2L2:0.374063233749;GZF1:0.369531395171;SOX{8,9,10}:0.366885386311;ATF6:0.36215969614;SOX17:0.358926324034;PATZ1:0.353011676441;YY1:0.335858390866;PAX3,7:0.324005934865;MTF1:0.320009742089;BACH2:0.316881215519;NHLH1,2:0.314048263194;ZNF423:0.29506407678;UFEwm:0.293229532166;HBP1_HMGB_SSRP1_UBTF:0.283161947381;FOX{I1,J2}:0.272502348246;TFAP4:0.271104782965;HIC1:0.266146879787;NFE2L1:0.260281337718;ADNP_IRX_SIX_ZHX:0.256377296587;AR:0.254342704926;ESRRA:0.251368090187;ALX1:0.246507225934;TAL1_TCF{3,4,12}:0.244209719352;CDX1,2,4:0.208036442343;SMAD1..7,9:0.205767661893;NFIX:0.204361710241;FOXL1:0.183461433021;NFKB1_REL_RELA:0.182102814223;REST:0.165652316664;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.158919659239;EGR1..3:0.156305347868;MYFfamily:0.151939134356;NFE2:0.147210815001;HLF:0.1389222135;bHLH_family:0.136072403298;FOSL2:0.132426579288;NKX3-2:0.130906409873;KLF4:0.123830594395;XBP1:0.110373167522;STAT5{A,B}:0.10135536988;RXRA_VDR{dimer}:0.0995047265181;PRRX1,2:0.0988326196005;TOPORS:0.0815843268944;HNF1A:0.0712324310239;ZNF384:0.0566224931582;HOXA9_MEIS1:0.0525386101067;AIRE:0.0484173142036;JUN:0.0446065687473;PAX2:0.036560007059;SOX2:0.028954288656;POU1F1:-0.0242633311748;LMO2:-0.0302184416431;MEF2{A,B,C,D}:-0.0352776899486;ETS1,2:-0.0469308464366;VSX1,2:-0.0668845344287;SP1:-0.0953766486682;DMAP1_NCOR{1,2}_SMARC:-0.0976269039372;RUNX1..3:-0.102277935062;LEF1_TCF7_TCF7L1,2:-0.124414813015;ELF1,2,4:-0.13076741157;POU6F1:-0.134371409999;GFI1:-0.142585310893;HNF4A_NR2F1,2:-0.161095151373;NFIL3:-0.164472762289;TLX2:-0.16701921968;ZFP161:-0.171341753199;HMGA1,2:-0.172563507164;HOX{A6,A7,B6,B7}:-0.177426813002;MYB:-0.179313940234;TGIF1:-0.187594335485;ATF2:-0.1886608391;PAX5:-0.193699089768;DBP:-0.200197592169;ESR1:-0.200624166729;NR5A1,2:-0.227861521282;FOX{F1,F2,J1}:-0.229938085893;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.242518554851;SPIB:-0.242681644371;SPI1:-0.285238452614;GATA6:-0.288569587692;ELK1,4_GABP{A,B1}:-0.326309471505;NANOG:-0.328253112439;RFX1:-0.329238837932;E2F1..5:-0.347844824855;RORA:-0.349870718299;NKX2-1,4:-0.362895119473;BPTF:-0.381547956684;ATF5_CREB3:-0.418797550545;ZNF143:-0.447348559113;FOXO1,3,4:-0.456426602385;SREBF1,2:-0.460869132194;NFY{A,B,C}:-0.46925218184;FOXD3:-0.472996575862;PITX1..3:-0.489900028517;NRF1:-0.490857931739;PDX1:-0.513505412259;NKX2-3_NKX2-5:-0.522913160498;FOX{D1,D2}:-0.527427503535;BREu{core}:-0.53019172967;FOXP3:-0.532366286391;TBX4,5:-0.533208485002;ARID5B:-0.554640733547;NKX6-1,2:-0.558871672785;FOXM1:-0.582392239009;CUX2:-0.590233820252;HOX{A4,D4}:-0.60578227968;SNAI1..3:-0.63217208313;SOX5:-0.638122570294;FOXQ1:-0.645962592281;FOXN1:-0.699922339939;RBPJ:-0.749690199684;OCT4_SOX2{dimer}:-0.754413174509;ATF4:-0.76119456755;IKZF2:-0.771741377426;PAX6:-0.813769204983;FOXP1:-0.876037729186;FOXA2:-0.884407382416;T:-0.899735953289;MYOD1:-0.922708590317;ZEB1:-0.956625562871;RFX2..5_RFXANK_RFXAP:-0.95798447387;STAT1,3:-0.996503577889;TEF:-1.03793361426;CREB1:-1.04503569749;PAX4:-1.11716443076;ZBTB16:-1.19226789899 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11283-116I5;search_select_hide=table117:FF:11283-116I5 | |||
}} | }} | ||
Latest revision as of 16:30, 3 June 2020
| Name: | Smooth Muscle Cells - Aortic, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11085 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11085
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11085
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.4 |
| 10 | 10 | 0.0997 |
| 100 | 100 | 0.487 |
| 101 | 101 | 0.594 |
| 102 | 102 | 0.691 |
| 103 | 103 | 0.673 |
| 104 | 104 | 0.146 |
| 105 | 105 | 0.929 |
| 106 | 106 | 0.0343 |
| 107 | 107 | 0.00597 |
| 108 | 108 | 0.206 |
| 109 | 109 | 0.605 |
| 11 | 11 | 0.533 |
| 110 | 110 | 0.339 |
| 111 | 111 | 0.223 |
| 112 | 112 | 0.69 |
| 113 | 113 | 0.166 |
| 114 | 114 | 0.493 |
| 115 | 115 | 0.602 |
| 116 | 116 | 0.113 |
| 117 | 117 | 0.873 |
| 118 | 118 | 0.721 |
| 119 | 119 | 0.754 |
| 12 | 12 | 0.81 |
| 120 | 120 | 0.309 |
| 121 | 121 | 0.245 |
| 122 | 122 | 0.932 |
| 123 | 123 | 0.00896 |
| 124 | 124 | 0.669 |
| 125 | 125 | 0.902 |
| 126 | 126 | 0.421 |
| 127 | 127 | 0.619 |
| 128 | 128 | 0.175 |
| 129 | 129 | 0.497 |
| 13 | 13 | 0.736 |
| 130 | 130 | 0.191 |
| 131 | 131 | 0.576 |
| 132 | 132 | 0.483 |
| 133 | 133 | 0.818 |
| 134 | 134 | 0.967 |
| 135 | 135 | 0.32 |
| 136 | 136 | 0.135 |
| 137 | 137 | 0.819 |
| 138 | 138 | 0.908 |
| 139 | 139 | 0.684 |
| 14 | 14 | 0.924 |
| 140 | 140 | 0.764 |
| 141 | 141 | 0.0422 |
| 142 | 142 | 0.639 |
| 143 | 143 | 0.198 |
| 144 | 144 | 0.418 |
| 145 | 145 | 0.507 |
| 146 | 146 | 0.0673 |
| 147 | 147 | 0.0182 |
| 148 | 148 | 0.572 |
| 149 | 149 | 0.256 |
| 15 | 15 | 0.878 |
| 150 | 150 | 0.101 |
| 151 | 151 | 0.362 |
| 152 | 152 | 0.0378 |
| 153 | 153 | 0.195 |
| 154 | 154 | 0.702 |
| 155 | 155 | 0.016 |
| 156 | 156 | 0.592 |
| 157 | 157 | 0.121 |
| 158 | 158 | 0.0324 |
| 159 | 159 | 0.407 |
| 16 | 16 | 0.141 |
| 160 | 160 | 0.239 |
| 161 | 161 | 0.786 |
| 162 | 162 | 0.235 |
| 163 | 163 | 0.762 |
| 164 | 164 | 0.934 |
| 165 | 165 | 0.331 |
| 166 | 166 | 0.0363 |
| 167 | 167 | 0.225 |
| 168 | 168 | 0.963 |
| 169 | 169 | 0.0951 |
| 17 | 17 | 0.295 |
| 18 | 18 | 0.0672 |
| 19 | 19 | 0.128 |
| 2 | 2 | 0.336 |
| 20 | 20 | 0.405 |
| 21 | 21 | 0.336 |
| 22 | 22 | 0.4 |
| 23 | 23 | 0.329 |
| 24 | 24 | 0.221 |
| 25 | 25 | 0.0539 |
| 26 | 26 | 0.364 |
| 27 | 27 | 0.824 |
| 28 | 28 | 0.136 |
| 29 | 29 | 0.989 |
| 3 | 3 | 0.614 |
| 30 | 30 | 0.415 |
| 31 | 31 | 0.526 |
| 32 | 32 | 8.92011e-6 |
| 33 | 33 | 0.972 |
| 34 | 34 | 0.271 |
| 35 | 35 | 0.649 |
| 36 | 36 | 0.327 |
| 37 | 37 | 0.39 |
| 38 | 38 | 0.961 |
| 39 | 39 | 0.14 |
| 4 | 4 | 0.667 |
| 40 | 40 | 0.145 |
| 41 | 41 | 0.86 |
| 42 | 42 | 0.961 |
| 43 | 43 | 0.243 |
| 44 | 44 | 0.686 |
| 45 | 45 | 0.169 |
| 46 | 46 | 0.456 |
| 47 | 47 | 0.831 |
| 48 | 48 | 0.808 |
| 49 | 49 | 0.919 |
| 5 | 5 | 0.942 |
| 50 | 50 | 0.51 |
| 51 | 51 | 0.671 |
| 52 | 52 | 0.692 |
| 53 | 53 | 0.268 |
| 54 | 54 | 0.565 |
| 55 | 55 | 0.24 |
| 56 | 56 | 0.434 |
| 57 | 57 | 0.858 |
| 58 | 58 | 0.334 |
| 59 | 59 | 0.194 |
| 6 | 6 | 0.25 |
| 60 | 60 | 0.568 |
| 61 | 61 | 0.424 |
| 62 | 62 | 0.536 |
| 63 | 63 | 0.401 |
| 64 | 64 | 0.855 |
| 65 | 65 | 0.252 |
| 66 | 66 | 0.849 |
| 67 | 67 | 0.857 |
| 68 | 68 | 0.24 |
| 69 | 69 | 0.405 |
| 7 | 7 | 0.263 |
| 70 | 70 | 0.463 |
| 71 | 71 | 0.885 |
| 72 | 72 | 0.229 |
| 73 | 73 | 0.0633 |
| 74 | 74 | 0.972 |
| 75 | 75 | 0.594 |
| 76 | 76 | 0.593 |
| 77 | 77 | 0.023 |
| 78 | 78 | 0.425 |
| 79 | 79 | 0.199 |
| 8 | 8 | 0.433 |
| 80 | 80 | 0.512 |
| 81 | 81 | 0.891 |
| 82 | 82 | 0.441 |
| 83 | 83 | 0.434 |
| 84 | 84 | 0.648 |
| 85 | 85 | 0.0748 |
| 86 | 86 | 0.655 |
| 87 | 87 | 0.0697 |
| 88 | 88 | 0.107 |
| 89 | 89 | 0.126 |
| 9 | 9 | 0.161 |
| 90 | 90 | 0.613 |
| 91 | 91 | 0.694 |
| 92 | 92 | 0.659 |
| 93 | 93 | 0.815 |
| 94 | 94 | 0.715 |
| 95 | 95 | 0.527 |
| 96 | 96 | 0.896 |
| 97 | 97 | 0.135 |
| 98 | 98 | 0.36 |
| 99 | 99 | 0.018 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11085
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002539 (aortic smooth muscle cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001135 (smooth muscle tissue)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0002385 (muscle tissue)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0004237 (blood vessel smooth muscle)
0004695 (arterial system smooth muscle)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0002111 (artery smooth muscle tissue)
0007798 (vascular system)
0001015 (musculature)
0004178 (aorta smooth muscle tissue)
0002204 (musculoskeletal system)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000383 (musculature of body)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000168 (human aortic smooth muscle cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)
