FF:11328-117E5: Difference between revisions

Latest revision as of 17:52, 4 June 2020

Name:	Preadipocyte - breast, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11971
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	breast
dev stage	40 years old adult
sex	female
age	40
cell type	preadipocyte
cell line	NA
company	Zenbio
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005471

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11971		CAGE		DRX008408		DRR009280

Accession ID Hg19

Library id		BAM		CTSS
CNhs11971		DRZ000705		DRZ002090

Accession ID Hg38

Library id		BAM		CTSS
CNhs11971		DRZ012055		DRZ013440

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005471

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10007.CGTACG		sRNA-Seq		DRX037107		DRR041473

Accession ID Hg19

Library id		BAM		CTSS
SRhi10007.CGTACG		DRZ007115

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0534
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.303
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	1.251
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	7.902214e-4
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.611
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.386
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.653
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.265
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.265
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	1.134
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.434
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0776
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.193
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.933
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0111
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.444
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.327
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.265
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.872
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.781
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.23
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.472
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.23
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.107
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.169
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11971

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.566
MA0003.1	MA0003.1	0.252
MA0004.1	MA0004.1	0.545
MA0006.1	MA0006.1	0.0975
MA0007.1	MA0007.1	0.584
MA0009.1	MA0009.1	0.309
MA0014.1	MA0014.1	0.216
MA0017.1	MA0017.1	0.74
MA0018.2	MA0018.2	3.64976e-5
MA0019.1	MA0019.1	0.549
MA0024.1	MA0024.1	1.94203e-4
MA0025.1	MA0025.1	0.00283
MA0027.1	MA0027.1	0.545
MA0028.1	MA0028.1	0.0156
MA0029.1	MA0029.1	0.303
MA0030.1	MA0030.1	0.118
MA0031.1	MA0031.1	0.0789
MA0035.2	MA0035.2	0.0482
MA0038.1	MA0038.1	0.00655
MA0039.2	MA0039.2	0.00733
MA0040.1	MA0040.1	0.2
MA0041.1	MA0041.1	0.742
MA0042.1	MA0042.1	0.996
MA0043.1	MA0043.1	4.98064e-5
MA0046.1	MA0046.1	0.272
MA0047.2	MA0047.2	0.417
MA0048.1	MA0048.1	0.202
MA0050.1	MA0050.1	3.02813e-5
MA0051.1	MA0051.1	0.00267
MA0052.1	MA0052.1	0.0655
MA0055.1	MA0055.1	0.985
MA0057.1	MA0057.1	0.237
MA0058.1	MA0058.1	0.292
MA0059.1	MA0059.1	0.582
MA0060.1	MA0060.1	5.71477e-10
MA0061.1	MA0061.1	0.0886
MA0062.2	MA0062.2	9.99918e-7
MA0065.2	MA0065.2	0.864
MA0066.1	MA0066.1	0.259
MA0067.1	MA0067.1	0.0174
MA0068.1	MA0068.1	0.675
MA0069.1	MA0069.1	0.0356
MA0070.1	MA0070.1	0.775
MA0071.1	MA0071.1	0.351
MA0072.1	MA0072.1	0.483
MA0073.1	MA0073.1	0.847
MA0074.1	MA0074.1	0.176
MA0076.1	MA0076.1	0.00171
MA0077.1	MA0077.1	0.955
MA0078.1	MA0078.1	0.865
MA0079.2	MA0079.2	0.791
MA0080.2	MA0080.2	5.07658e-7
MA0081.1	MA0081.1	0.0139
MA0083.1	MA0083.1	0.189
MA0084.1	MA0084.1	0.518
MA0087.1	MA0087.1	0.558
MA0088.1	MA0088.1	0.601
MA0090.1	MA0090.1	8.56278e-4
MA0091.1	MA0091.1	0.0497
MA0092.1	MA0092.1	0.193
MA0093.1	MA0093.1	0.452
MA0099.2	MA0099.2	4.57806e-5
MA0100.1	MA0100.1	0.548
MA0101.1	MA0101.1	4.45388e-4
MA0102.2	MA0102.2	0.0361
MA0103.1	MA0103.1	0.138
MA0104.2	MA0104.2	0.0478
MA0105.1	MA0105.1	0.372
MA0106.1	MA0106.1	0.0763
MA0107.1	MA0107.1	3.16606e-4
MA0108.2	MA0108.2	0.662
MA0111.1	MA0111.1	0.71
MA0112.2	MA0112.2	1.17522e-4
MA0113.1	MA0113.1	0.363
MA0114.1	MA0114.1	0.757
MA0115.1	MA0115.1	0.0662
MA0116.1	MA0116.1	0.128
MA0117.1	MA0117.1	0.2
MA0119.1	MA0119.1	0.124
MA0122.1	MA0122.1	0.406
MA0124.1	MA0124.1	0.0166
MA0125.1	MA0125.1	0.232
MA0131.1	MA0131.1	0.237
MA0135.1	MA0135.1	0.284
MA0136.1	MA0136.1	1.59505e-10
MA0137.2	MA0137.2	0.122
MA0138.2	MA0138.2	0.0395
MA0139.1	MA0139.1	0.952
MA0140.1	MA0140.1	0.218
MA0141.1	MA0141.1	0.461
MA0142.1	MA0142.1	0.405
MA0143.1	MA0143.1	0.306
MA0144.1	MA0144.1	0.999
MA0145.1	MA0145.1	0.213
MA0146.1	MA0146.1	0.762
MA0147.1	MA0147.1	0.117
MA0148.1	MA0148.1	0.353
MA0149.1	MA0149.1	0.68
MA0150.1	MA0150.1	0.0236
MA0152.1	MA0152.1	0.0318
MA0153.1	MA0153.1	0.926
MA0154.1	MA0154.1	0.323
MA0155.1	MA0155.1	0.113
MA0156.1	MA0156.1	2.43783e-8
MA0157.1	MA0157.1	0.261
MA0159.1	MA0159.1	0.0652
MA0160.1	MA0160.1	0.351
MA0162.1	MA0162.1	0.0751
MA0163.1	MA0163.1	0.0145
MA0164.1	MA0164.1	0.62
MA0258.1	MA0258.1	0.0358
MA0259.1	MA0259.1	0.29

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11971

Novel motif	Logo	P-value
1	1	0.406
10	10	0.342
100	100	0.996
101	101	0.194
102	102	0.269
103	103	0.396
104	104	0.677
105	105	0.0598
106	106	0.0472
107	107	0.0396
108	108	0.157
109	109	0.478
11	11	0.384
110	110	0.455
111	111	0.359
112	112	0.303
113	113	0.243
114	114	0.0303
115	115	0.00852
116	116	0.0461
117	117	0.941
118	118	0.452
119	119	0.93
12	12	0.322
120	120	0.31
121	121	0.69
122	122	0.181
123	123	0.0506
124	124	0.44
125	125	0.815
126	126	0.765
127	127	0.52
128	128	0.106
129	129	0.941
13	13	0.956
130	130	0.532
131	131	0.973
132	132	0.475
133	133	0.864
134	134	0.631
135	135	0.529
136	136	0.566
137	137	0.537
138	138	0.92
139	139	0.222
14	14	0.28
140	140	0.717
141	141	0.991
142	142	0.995
143	143	0.431
144	144	0.653
145	145	0.904
146	146	0.756
147	147	0.176
148	148	0.99
149	149	0.00165
15	15	0.886
150	150	0.421
151	151	0.831
152	152	0.00682
153	153	0.193
154	154	0.872
155	155	0.105
156	156	0.961
157	157	0.574
158	158	0.0281
159	159	0.524
16	16	0.00914
160	160	0.533
161	161	0.7
162	162	0.369
163	163	0.614
164	164	0.174
165	165	0.752
166	166	0.305
167	167	0.54
168	168	0.946
169	169	0.0192
17	17	0.228
18	18	0.135
19	19	0.00428
2	2	0.302
20	20	0.602
21	21	0.283
22	22	0.223
23	23	0.237
24	24	0.131
25	25	0.43
26	26	0.266
27	27	0.441
28	28	0.264
29	29	0.658
3	3	0.4
30	30	0.679
31	31	0.475
32	32	1.12087e-16
33	33	0.727
34	34	0.88
35	35	0.624
36	36	0.0419
37	37	0.0784
38	38	0.749
39	39	0.293
4	4	0.96
40	40	0.59
41	41	0.944
42	42	0.386
43	43	0.191
44	44	0.0899
45	45	0.911
46	46	0.298
47	47	0.553
48	48	0.481
49	49	0.704
5	5	0.643
50	50	0.748
51	51	0.878
52	52	0.609
53	53	0.132
54	54	0.684
55	55	0.108
56	56	0.745
57	57	0.709
58	58	0.419
59	59	0.0338
6	6	0.514
60	60	0.504
61	61	0.785
62	62	0.803
63	63	0.279
64	64	0.776
65	65	0.388
66	66	0.244
67	67	0.551
68	68	0.334
69	69	0.414
7	7	0.411
70	70	0.296
71	71	0.271
72	72	0.731
73	73	0.00545
74	74	0.278
75	75	0.603
76	76	0.6
77	77	0.0323
78	78	0.834
79	79	0.00101
8	8	0.238
80	80	0.204
81	81	0.47
82	82	0.166
83	83	0.431
84	84	0.263
85	85	0.0319
86	86	0.468
87	87	0.116
88	88	0.816
89	89	0.0766
9	9	0.861
90	90	0.625
91	91	0.945
92	92	0.0745
93	93	0.39
94	94	0.907
95	95	0.187
96	96	0.942
97	97	0.659
98	98	0.941
99	99	0.0167

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11971

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000139 human preadipocyte of the breast sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002580 (preadipocyte of the breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000139 (human preadipocyte of the breast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005471
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005471
+|accession_numbers=CAGE;DRX008408;DRR009280;DRZ000705;DRZ002090;DRZ012055;DRZ013440
+|accession_numbers_RNASeq=sRNA-Seq;DRX037107;DRR041473;DRZ007115
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000057,CL:0002334,CL:0002580
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002580
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000139
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.96!89.81!HOXC5;;chr12:54402745..54402788,+!p1@HOXC8!1.77!57.82!HOXC8;;chr1:170632285..170632309,+!p1@PRRX1!1.70!55.57!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.63!53.61!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.63!41.82!PRRX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.59!37.89!ZBED1;;chr2:119605214..119605230,-!p1@EN1!1.43!25.82!EN1;;chr19:47523058..47523114,+!p1@NPAS1!1.43!25.82!NPAS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.33!102.16!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.32!54.17!TWIST1;;chr2:239756671..239756732,+!p1@TWIST2!1.27!55.29!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!1.26!23.29!PRRX1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.26!17.40!HOXC5;;chr1:170633262..170633285,+!p3@PRRX1!1.24!18.52!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.23!47.43!MSX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.22!26.38!CREB3L1;;chr12:54402790..54402805,+!p2@HOXC8!1.22!15.44!HOXC8;;chr4:111558135..111558198,-!p2@PITX2!1.22!15.44!PITX2;;chr4:174450089..174450153,-!p2@HAND2!1.22!15.44!HAND2;;chr1:23885981..23886002,-!p1@ID3!1.20!2510.79!ID3;;chrX:106960180..106960197,-!p2@TSC22D3!1.20!56.41!TSC22D3;;chr12:54402729..54402743,+!p3@HOXC8!1.19!14.59!HOXC8;;chr2:239756739..239756755,+!p2@TWIST2!1.18!24.14!TWIST2;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.75!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!1.13!12.35!EBF3;;chr2:19558373..19558392,-!p1@OSR1!1.12!33.68!OSR1;;chr2:119604456..119604501,-!p2@EN1!1.10!11.51!EN1;;chr5:72744594..72744609,-!p1@FOXD1!1.09!52.48!FOXD1;;chr18:53068911..53068935,-!p4@TCF4!1.08!12.63!TCF4;;chr4:174451370..174451387,-!p1@HAND2!1.06!10.38!HAND2;;chr19:50432453..50432468,+!p1@ATF5!1.03!547.29!ATF5;;chr14:62162258..62162269,+!p2@HIF1A!1.02!92.90!HIF1A;;chr12:54394309..54394336,+!p2@HOXC9!1.01!9.26!HOXC9;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.26!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!1.00!8.98!PITX2;;chr14:95236440..95236465,-!p1@GSC!1.00!8.98!GSC;;chr14:62162285..62162296,+!p3@HIF1A!0.99!46.31!HIF1A;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.70!HOXC9;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.70!HOXA9;;chr2:8822176..8822196,+!p1@ID2!0.97!1193.09!ID2;;chr5:158526917..158526932,-!p1@EBF1!0.97!21.33!EBF1;;chr12:54410948..54410992,+!p3@HOXC5!0.97!8.42!HOXC5;;chr2:85980951..85981004,+!p1@ATOH8!0.96!13.47!ATOH8;;chr17:46687959..46688007,-!p2@HOXB7!0.96!11.23!HOXB7;;chr8:49833948..49833973,-!p2@SNAI2!0.95!51.92!SNAI2;;chr8:72756667..72756736,-!p2@MSC!0.95!12.63!MSC;;chr17:46682321..46682362,-!p1@HOXB6!0.95!7.86!HOXB6;;chr11:12696071..12696086,+!p3@TEAD1!0.94!10.38!TEAD1;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.58!HOXD8;;chr12:80085061..80085119,-!p6@PAWR!0.92!11.79!PAWR;;chr10:119303078..119303169,+!p2@EMX2!0.92!7.30!EMX2;;chr16:31076332..31076388,-!p3@ZNF668!0.92!7.30!ZNF668;;chr1:170632683..170632696,+!p12@PRRX1!0.92!7.30!PRRX1;;chr7:44143925..44143970,+!p1@AEBP1!0.91!165.87!AEBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.90!7.58!SHOX2;;chr1:170632439..170632465,+!p11@PRRX1!0.90!7.02!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.90!7.02!PRRX1;;chr6:19837592..19837621,+!p1@ID4!0.89!42.94!ID4;;chr14:62203595..62203676,+!p4@HIF1A!0.89!12.91!HIF1A;;chr7:44143978..44143989,+!p2@AEBP1!0.89!12.63!AEBP1;;chr10:77161504..77161530,-!p1@ZNF503!0.88!92.06!ZNF503;;chr5:72744445..72744466,-!p2@FOXD1!0.87!10.95!FOXD1;;chr19:50435736..50435781,+!p3@ATF5!0.87!8.98!ATF5;;chr7:27205106..27205134,-!p2@HOXA9!0.87!6.46!HOXA9;;chr14:62213827..62213853,+!p6@HIF1A!0.86!8.98!HIF1A;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.17!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.17!HOXA3;;chr14:95236551..95236576,-!p2@GSC!0.86!6.17!GSC;;chr6:144329384..144329405,-!p1@PLAGL1!0.85!75.22!PLAGL1;;chr10:77161650..77161661,-!p4@ZNF503!0.85!8.70!ZNF503;;chrX:106960221..106960236,-!p3@TSC22D3!0.84!17.40!TSC22D3;;chr5:2751762..2751784,-!p1@IRX2!0.84!5.89!IRX2;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.77!SNAI2;;chr10:63809013..63809041,+!p3@ARID5B!0.82!33.40!ARID5B;;chr8:72756267..72756296,-!p4@MSC!0.82!8.42!MSC;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.74!FOXD1;;chr19:13134457..13134462,+!p5@NFIX!0.81!10.10!NFIX;;chr7:44143997..44144008,+!p3@AEBP1!0.81!7.02!AEBP1;;chr8:72756213..72756243,-!p5@MSC!0.80!7.02!MSC;;chr11:46333934..46333963,+!p5@CREB3L1!0.80!5.33!CREB3L1;;chr12:54447686..54447704,+!p5@HOXC4!0.80!5.33!HOXC4;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.75!TWIST1;;chr14:62203749..62203798,+!p5@HIF1A!0.79!8.42!HIF1A;;chr14:75894714..75894733,+!p1@JDP2!0.78!154.36!JDP2;;chr17:1959369..1959388,+!p2@HIC1!0.78!14.31!HIC1;;chr1:170632723..170632739,+!p8@PRRX1!0.78!5.05!PRRX1;;chr1:200379104..200379128,-!p2@ZNF281!0.77!12.63!ZNF281;;chr19:47922750..47922795,-!p1@MEIS3!0.77!8.42!MEIS3;;chr2:85980919..85980942,+!p4@ATOH8!0.77!5.33!ATOH8;;chr8:72756063..72756125,-!p1@MSC!0.76!10.10!MSC;;chr1:119530706..119530736,-!p3@TBX15!0.76!4.77!TBX15;;chr1:170632137..170632172,+!p10@PRRX1!0.76!4.77!PRRX1;;chr10:28034739..28034756,-!p1@MKX!0.76!4.77!MKX;;chr12:54422217..54422239,+!p3@HOXC6!0.76!4.77!HOXC6;;chr13:37494275..37494304,-!p2@SMAD9!0.76!4.77!SMAD9;;chr20:30193083..30193098,+!p1@ID1!0.75!413.13!ID1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.74!353.91!TAX1BP3;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr20:30433396..30433414,-!p1@FOXS1!0.74!4.49!FOXS1;;chr17:46621937..46621966,-!p2@HOXB2!0.73!12.91!HOXB2;;chr17:38498594..38498661,+!p2@RARA!0.72!15.72!RARA;;chr5:139492456..139492489,+!p7@PURA!0.72!4.21!PURA;;chr10:119302645..119302712,+!p3@EMX2!0.72!4.21!EMX2;;chr2:121493425..121493474,+!p1@GLI2!0.71!9.82!GLI2;;chr19:13134772..13134822,+!p2@NFIX!0.71!6.46!NFIX;;chr16:54964740..54964789,+!p1@IRX5!0.71!6.17!IRX5;;chr8:72756637..72756664,-!p3@MSC!0.71!4.77!MSC;;chr19:13136241..13136258,+!p7@NFIX!0.70!5.61!NFIX;;chr19:13106214..13106382,+!p1@NFIX!0.69!103.56!NFIX;;chr2:85981027..85981047,+!p8@ATOH8!0.69!3.93!ATOH8;;chr2:85981073..85981091,+!p5@ATOH8!0.69!3.93!ATOH8;;chr12:54394416..54394467,+!p5@HOXC9!0.69!3.93!HOXC9;;chr12:54447637..54447659,+!p4@HOXC4!0.69!3.93!HOXC4;;chr12:80085120..80085156,-!p14@PAWR!0.69!3.93!PAWR;;chr8:25902876..25902936,-!p1@EBF2!0.69!3.93!EBF2;;chr8:40755333..40755352,-!p1@ZMAT4!0.69!3.93!ZMAT4;;chr13:45151259..45151326,-!p2@TSC22D1!0.68!25.82!TSC22D1;;chr6:85474299..85474324,-!p1@TBX18!0.68!7.30!TBX18;;chr2:85981222..85981259,+!p2@ATOH8!0.68!6.74!ATOH8;;chr18:19749541..19749557,+!p1@GATA6!0.67!12.91!GATA6;;chr15:96874145..96874166,+!p7@NR2F2!0.67!7.58!NR2F2;;chr2:121493492..121493537,+!p2@GLI2!0.67!6.46!GLI2;;chr2:223163706..223163730,-!p1@PAX3!0.67!3.65!PAX3;;chr7:1577899..1577943,+!p3@MAFK!0.67!3.65!MAFK;;chr7:27196267..27196311,-!p1@HOXA7!0.67!3.65!HOXA7;;chr11:46333979..46333991,+!p7@CREB3L1!0.67!3.65!CREB3L1;;chr14:62213758..62213774,+!p8@HIF1A!0.66!4.77!HIF1A;;chr14:62162224..62162254,+!p1@HIF1A!0.65!587.42!HIF1A;;chr10:63809106..63809127,+!p1@ARID5B!0.64!54.17!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.64!8.14!ARID5B;;chr12:114843940..114843955,-!p2@TBX5!0.64!3.37!TBX5;;chr14:62214151..62214164,+!p11@HIF1A!0.64!3.37!HIF1A;;chr2:85980868..85980880,+!p12@ATOH8!0.64!3.37!ATOH8;;chr17:46132044..46132080,+!p4@NFE2L1!0.64!3.37!NFE2L1;;chr7:27183291..27183324,-!p1@HOXA5!0.64!3.37!HOXA5;;chr7:27196217..27196246,-!p2@HOXA7!0.64!3.37!HOXA7;;chr7:96654133..96654150,-!p1@DLX5!0.64!3.37!DLX5;;chr1:170632310..170632321,+!p15@PRRX1!0.64!3.37!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.64!3.37!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!0.62!14.03!SIX1;;chr10:77161133..77161176,-!p3@ZNF503!0.62!7.58!ZNF503;;chr12:48298765..48298783,-!p2@VDR!0.62!7.30!VDR;;chrX:106960285..106960299,-!p1@TSC22D3!0.61!100.76!TSC22D3;;chr10:114710244..114710257,+!p3@TCF7L2!0.61!9.54!TCF7L2;;chr18:19749386..19749404,+!p2@GATA6!0.61!4.77!GATA6;;chr19:13135582..13135600,+!p3@NFIX!0.61!3.09!NFIX;;chr1:119530636..119530653,-!p2@TBX15!0.61!3.09!TBX15;;chr17:3571887..3571918,-!p2@TAX1BP3!0.60!40.70!TAX1BP3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.59!31.43!PPP1R13L;;chr6:21597765..21597779,+!p2@SOX4!0.59!28.63!SOX4;;chr10:63853436..63853442,+!p4@ARID5B!0.59!18.52!ARID5B;;chr5:321810..321877,+!p1@AHRR!0.59!10.67!AHRR;;chr15:57511609..57511651,+!p2@TCF12!0.59!5.33!TCF12;;chrX:106960249..106960260,-!p5@TSC22D3!0.59!5.05!TSC22D3;;chr7:28220198..28220269,-!p2@JAZF1!0.58!30.87!JAZF1;;chr1:8934931..8934947,-!p4@ENO1!0.58!10.95!ENO1;;chr6:144289132..144289134,-!p3@PLAGL1!0.58!7.58!PLAGL1;;chr3:24536253..24536328,-!p1@THRB!0.58!5.89!THRB;;chr2:119605253..119605264,-!p5@EN1!0.58!2.81!EN1;;chr2:119605374..119605377,-!p7@EN1!0.58!2.81!EN1;;chr2:176987441..176987454,+!p1@HOXD9!0.58!2.81!HOXD9;;chr2:85980903..85980914,+!p11@ATOH8!0.58!2.81!ATOH8;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.81!ATOH8;;chr5:158527104..158527135,-!p4@EBF1!0.58!2.81!EBF1;;chr7:15726296..15726315,-!p1@MEOX2!0.58!2.81!MEOX2;;chr7:96654026..96654061,-!p2@DLX5!0.58!2.81!DLX5;;chr1:170632647..170632659,+!p17@PRRX1!0.58!2.81!PRRX1;;chr10:119302508..119302559,+!p5@EMX2!0.58!2.81!EMX2;;chr10:28032421..28032494,-!p2@MKX!0.58!2.81!MKX;;chr13:37494248..37494260,-!p3@SMAD9!0.58!2.81!SMAD9;;chr13:37494306..37494324,-!p4@SMAD9!0.58!2.81!SMAD9;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.12!GLIS2;;chr3:150126759..150126784,+!p2@TSC22D2!0.57!14.87!TSC22D2;;chr17:46622070..46622109,-!p1@HOXB2!0.57!7.02!HOXB2;;chr5:139487608..139487663,+!p3@PURA!0.57!6.74!PURA;;chr12:80083544..80083558,-!p13@PAWR!0.57!3.65!PAWR;;chr3:178789522..178789564,-!p2@ZMAT3!0.56!24.14!ZMAT3;;chr7:150945754..150945789,-!p2@SMARCD3!0.56!9.54!SMARCD3;;chr13:45151403..45151433,-!p5@TSC22D1!0.56!6.74!TSC22D1;;chr19:44037546..44037594,+!p1@ZNF575!0.56!6.17!ZNF575;;chr8:77593474..77593612,+!p1@ZFHX4!0.55!13.19!ZFHX4;;chr14:62193465..62193490,+!p7@HIF1A!0.55!3.93!HIF1A;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.55!2.81!GLIS1;;chr19:47910182..47910187,-!p3@MEIS3!0.55!2.53!MEIS3;;chr1:170633245..170633256,+!p14@PRRX1!0.55!2.53!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.55!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002334;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002580;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000310
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520breast%252c%2520donor2.CNhs11971.11328-117E5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11328-117E5
 |is_a=EFO:0002091;;FF:0000139
 |is_obsolete=
+|library_id=CNhs11971
+|library_id_phase_based=2:CNhs11971
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11328
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.CGTACG.11328
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11328
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.CGTACG.11328
 |name=Preadipocyte - breast, donor2
 |namespace=FANTOM5
@@ Line 44: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11971,LSID836,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10007,,,
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 |rna_box=117
 |rna_catalog_number=N/A
@@ Line 56: / Line 80: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=117E5
+|rna_tube_id=1.17E+07
 |rna_weight_ug=16.8
+|rnaseq_library_id=SRhi10007.CGTACG
 |sample_age=40
+|sample_category=primary cells
 |sample_cell_catalog=F-BR-F
 |sample_cell_line=
@@ Line 80: / Line 106: @@
 |top_motifs=UFEwm:2.80293496811;HES1:2.58757002108;NKX2-2,8:2.5521625292;ESR1:2.47847851635;ALX4:2.15678500232;XBP1:2.00479319188;TAL1_TCF{3,4,12}:1.90541596466;GLI1..3:1.80851566127;GZF1:1.79517867682;NKX3-1:1.72803758361;RXR{A,B,G}:1.68983082134;FOXL1:1.65397399965;EVI1:1.64426008286;PAX1,9:1.63483015221;RXRA_VDR{dimer}:1.59058346059;HMGA1,2:1.58041579901;ZNF238:1.56743668341;TP53:1.54097317567;NFE2L1:1.52129397953;NANOG{mouse}:1.51369281334;GCM1,2:1.50551744372;TFAP4:1.49245140398;NR6A1:1.42111404188;IKZF1:1.41263927373;ATF6:1.38596455943;HMX1:1.3326470274;TEAD1:1.26221302513;EBF1:1.24390463461;MAFB:1.23080888666;HOX{A5,B5}:1.19698534427;KLF4:1.18328889035;EN1,2:1.09880031923;SMAD1..7,9:1.03302492366;ZNF423:1.01391612038;NR3C1:1.01318519689;TFAP2B:0.983933033378;TEF:0.96031248529;TBX4,5:0.946300044867;NKX3-2:0.868848468457;SRF:0.854814719279;HIF1A:0.818703221251;GATA4:0.815191555983;MTE{core}:0.813599962643;MYBL2:0.812765856712;SPZ1:0.809931972199;ARID5B:0.738861807761;TFCP2:0.73869775709;HOX{A4,D4}:0.723928662143;GFI1B:0.663596395695;AIRE:0.649393106707;NFATC1..3:0.57908383527;NFIX:0.570060871889;HIC1:0.56434827897;GTF2I:0.536002603648;TLX1..3_NFIC{dimer}:0.525764298491;MAZ:0.52404323876;NKX2-1,4:0.522051920475;ZNF148:0.513577325473;HLF:0.510390788433;DBP:0.46663859101;LHX3,4:0.461919816366;ZIC1..3:0.454812361874;FOXA2:0.447723835598;MYB:0.439505894778;POU6F1:0.405195499453;PAX5:0.380908582068;GTF2A1,2:0.368948586333;TFAP2{A,C}:0.340966366396;AR:0.298116585943;HAND1,2:0.298109335045;RREB1:0.238825411624;HOX{A6,A7,B6,B7}:0.235515344565;MZF1:0.227401215727;NHLH1,2:0.209138107157;NFE2L2:0.190761327642;ZBTB6:0.180696775553;bHLH_family:0.155700326309;T:0.149219919645;PATZ1:0.144717233059;HSF1,2:0.129728961931;TOPORS:0.120244726904;ADNP_IRX_SIX_ZHX:0.114104737116;MTF1:0.0800906429874;MYFfamily:0.068368565076;SOX17:0.046693942631;STAT2,4,6:0.0405914028727;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0128036781581;TBP:0.00994778313669;YY1:0.00696032487257;FOXO1,3,4:-0.0254071043914;REST:-0.0260928594898;XCPE1{core}:-0.0335029096014;NR5A1,2:-0.0386042452599;SOX5:-0.0442097783947;PRDM1:-0.0611277936413;MEF2{A,B,C,D}:-0.0781556386651;BACH2:-0.163332443671;ONECUT1,2:-0.167114359297;STAT5{A,B}:-0.185185546355;ELK1,4_GABP{A,B1}:-0.19132316052;ZNF384:-0.193254379956;HBP1_HMGB_SSRP1_UBTF:-0.196991374364;HNF1A:-0.202215175395;CDC5L:-0.217555883142;EGR1..3:-0.236980200017;IKZF2:-0.237432713032;TFDP1:-0.259627808762;BPTF:-0.281025422382;PAX2:-0.291746426986;ZBTB16:-0.29421427831;CEBPA,B_DDIT3:-0.31959958488;SREBF1,2:-0.32470568696;OCT4_SOX2{dimer}:-0.32490228123;STAT1,3:-0.357564615521;PAX4:-0.363403317612;CREB1:-0.372607344758;FOS_FOS{B,L1}_JUN{B,D}:-0.385523731071;ZNF143:-0.411185136226;HNF4A_NR2F1,2:-0.419388635345;POU3F1..4:-0.42356375886;PAX8:-0.424536028638;LEF1_TCF7_TCF7L1,2:-0.482203930216;RFX1:-0.496839650054;IRF1,2:-0.497586602356;FOSL2:-0.51575967936;DMAP1_NCOR{1,2}_SMARC:-0.528534929948;PAX3,7:-0.532073227174;RUNX1..3:-0.534990712517;FOXP3:-0.537414847413;POU1F1:-0.547229597576;GFI1:-0.555111996094;SNAI1..3:-0.563822534255;FOX{D1,D2}:-0.564613186069;AHR_ARNT_ARNT2:-0.566372637138;NFE2:-0.567287501005;FOXM1:-0.574658989319;SPI1:-0.592209049085;PITX1..3:-0.593642401584;NFKB1_REL_RELA:-0.596254808449;TGIF1:-0.60662653502;SOX2:-0.614207986196;LMO2:-0.655473600871;MED-1{core}:-0.663070509433;ATF5_CREB3:-0.665034796115;EP300:-0.669702925034;ETS1,2:-0.678451302763;NRF1:-0.688489866828;FOXD3:-0.70004213034;NFIL3:-0.701070439047;ZEB1:-0.713093123363;PAX6:-0.729862418965;SP1:-0.732086901645;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.737089339178;SPIB:-0.737668477016;NKX6-1,2:-0.7580579151;ESRRA:-0.765119529837;SOX{8,9,10}:-0.768032324952;NKX2-3_NKX2-5:-0.827553077995;ZFP161:-0.840583481714;ATF4:-0.860915434575;JUN:-0.871726226202;POU5F1:-0.889090588261;PPARG:-0.900614913441;BREu{core}:-0.902491076682;ELF1,2,4:-0.905494806966;NR1H4:-0.915777195919;ALX1:-0.940071073589;E2F1..5:-0.949197261625;FOXP1:-0.959575629146;HOXA9_MEIS1:-0.99054994048;GATA6:-1.04588798876;FOX{I1,J2}:-1.05978319355;CDX1,2,4:-1.06066706897;FOXN1:-1.07402658132;PRRX1,2:-1.08868777199;TLX2:-1.0918561122;IRF7:-1.18286743297;CUX2:-1.23954749139;FOX{F1,F2,J1}:-1.24442871125;NFY{A,B,C}:-1.30504956489;RFX2..5_RFXANK_RFXAP:-1.35914680518;RORA:-1.36862229369;VSX1,2:-1.40612898189;ATF2:-1.40999462995;FOXQ1:-1.42714477876;MYOD1:-1.52983009729;PBX1:-1.5453215447;RBPJ:-1.58042704475;CRX:-1.58808334235;POU2F1..3:-1.65000594379;NANOG:-1.95683836211;PDX1:-1.98169871655
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11328-117E5;search_select_hide=table117:FF:11328-117E5
 }}

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Latest revision as of 17:52, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0