FF:11368-117I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005012 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005012 | ||
|accession_numbers=CAGE;DRX008517;DRR009389;DRZ000814;DRZ002199;DRZ012164;DRZ013549 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037054;DRR041420;DRZ007062 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000187 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.83!66.71!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.79!78.32!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.78!66.71!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.68!126.45!TWIST1;;chr10:28034739..28034756,-!p1@MKX!1.66!45.18!MKX;;chr14:61116183..61116208,-!p1@SIX1!1.63!150.94!SIX1;;chr12:52445218..52445237,+!p1@NR4A1!1.59!456.41!NR4A1;;chr8:22550982..22550999,-!p1@EGR3!1.57!100.07!EGR3;;chr19:13134772..13134822,+!p2@NFIX!1.44!38.21!NFIX;;chr17:48072574..48072597,-!p1@DLX3!1.42!25.33!DLX3;;chr2:239756671..239756732,+!p1@TWIST2!1.41!77.48!TWIST2;;chr5:137804484..137804498,+!p2@EGR1!1.37!87.19!EGR1;;chr2:45236540..45236577,-!p1@SIX2!1.37!22.59!SIX2;;chr10:131762504..131762555,-!p1@EBF3!1.36!21.74!EBF3;;chr5:158526917..158526932,-!p1@EBF1!1.35!52.99!EBF1;;chr14:75746722..75746777,+!p2@FOS!1.35!27.23!FOS;;chr12:54380404..54380433,+!p3@HOXC10!1.26!17.31!HOXC10;;chr21:39821025..39821046,-!p9@ERG!1.25!16.89!ERG;;chr14:75745523..75745537,+!p1@FOS!1.24!1921.08!FOS;;chr6:1610293..1610310,+!p1@FOXC1!1.23!26.81!FOXC1;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.83!PITX1;;chr12:53614115..53614154,-!p1@RARG!1.22!82.54!RARG;;chr7:19157043..19157088,-!p2@TWIST1!1.22!39.27!TWIST1;;chr1:170632959..170632987,+!p4@PRRX1!1.22!17.10!PRRX1;;chr6:85474299..85474324,-!p1@TBX18!1.21!27.02!TBX18;;chr2:239756739..239756755,+!p2@TWIST2!1.19!24.49!TWIST2;;chr16:79634624..79634642,-!p1@MAF!1.18!55.31!MAF;;chr1:170632477..170632506,+!p6@PRRX1!1.17!13.72!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.27!FOXQ1;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!62.91!CREB3L1;;chr10:131762410..131762436,-!p2@EBF3!1.12!12.24!EBF3;;chr5:134369905..134369972,-!p1@PITX1!1.11!18.37!PITX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.10!11.61!SEBOX;;chr4:26323870..26323885,+!p13@RBPJ!1.10!11.61!RBPJ;;chr1:170633058..170633084,+!p5@PRRX1!1.10!11.61!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.09!11.19!EMX2;;chr4:26323764..26323821,+!p15@RBPJ!1.08!10.98!RBPJ;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.77!HOXC5;;chr7:27213893..27213954,-!p1@HOXA10!1.06!10.56!HOXA10;;chr17:7492684..7492778,-!p2@SOX15!1.05!21.96!SOX15;;chr16:79633894..79633954,-!p3@MAF!1.05!19.84!MAF;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.64!NFATC4;;chr1:170633348..170633399,+!p2@PRRX1!1.04!13.51!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!1.03!15.20!OSR2;;chr16:79634595..79634620,-!p2@MAF!1.02!17.31!MAF;;chr18:22932004..22932021,-!p2@ZNF521!1.02!9.50!ZNF521;;chr3:25470156..25470227,+!p2@RARB!1.02!9.50!RARB;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.29!HOXD8;;chr19:45971246..45971265,+!p1@FOSB!1.00!171.00!FOSB;;chr15:66994663..66994680,+!p1@SMAD6!1.00!21.74!SMAD6;;chr5:137801160..137801176,+!p1@EGR1!0.99!896.57!EGR1;;chr12:54378923..54378966,+!p1@HOXC10!0.98!8.66!HOXC10;;chr19:50432453..50432468,+!p1@ATF5!0.97!482.17!ATF5;;chr7:27192185..27192209,-!p1@HOXA3!0.97!8.23!HOXA3;;chr1:23885981..23886002,-!p1@ID3!0.96!1457.28!ID3;;chr7:44143925..44143970,+!p1@AEBP1!0.96!184.93!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.96!90.14!MAFF;;chr1:170633262..170633285,+!p3@PRRX1!0.96!9.29!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.02!PRRX1;;chr10:63853436..63853442,+!p4@ARID5B!0.95!43.91!ARID5B;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.68!EGR2;;chr8:72756667..72756736,-!p2@MSC!0.95!12.67!MSC;;chr8:72756637..72756664,-!p3@MSC!0.95!9.08!MSC;;chr5:158527104..158527135,-!p4@EBF1!0.95!7.81!EBF1;;chr2:176973498..176973524,+!p1@HOXD10!0.95!7.81!HOXD10;;chr14:61116168..61116180,-!p2@SIX1!0.94!8.87!SIX1;;chr4:26322267..26322334,+!p3@RBPJ!0.93!18.58!RBPJ;;chr8:72756267..72756296,-!p4@MSC!0.93!11.19!MSC;;chr20:51588873..51588953,+!p1@TSHZ2!0.93!10.13!TSHZ2;;chr7:15725757..15725828,-!p5@MEOX2!0.92!7.39!MEOX2;;chr2:8822176..8822196,+!p1@ID2!0.91!1034.85!ID2;;chr2:191878874..191878938,-!p1@STAT1!0.90!388.86!STAT1;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!84.87!PLAGL1;;chr7:27196267..27196311,-!p1@HOXA7!0.90!6.97!HOXA7;;chr6:126240442..126240459,+!p4@NCOA7!0.89!8.87!NCOA7;;chr10:63809106..63809127,+!p1@ARID5B!0.88!93.52!ARID5B;;chr12:53625966..53626012,-!p2@RARG!0.88!18.16!RARG;;chr15:66994561..66994597,+!p2@SMAD6!0.88!16.26!SMAD6;;chr7:44143997..44144008,+!p3@AEBP1!0.88!8.44!AEBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.88!7.18!SHOX2;;chr10:28035112..28035130,-!p5@MKX!0.88!6.54!MKX;;chr12:52448420..52448460,+!p5@NR4A1!0.88!6.54!NR4A1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.88!6.54!HOXC5;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.87!67.13!GLIS2;;chr7:44143978..44143989,+!p2@AEBP1!0.87!12.24!AEBP1;;chr19:50435736..50435781,+!p3@ATF5!0.87!9.08!ATF5;;chr1:170632723..170632739,+!p8@PRRX1!0.87!6.33!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.86!153.26!NFIX;;chr9:102584262..102584276,+!p1@NR4A3!0.86!14.57!NR4A3;;chr10:63809013..63809041,+!p3@ARID5B!0.85!35.68!ARID5B;;chr1:119530706..119530736,-!p3@TBX15!0.85!6.12!TBX15;;chr9:110252035..110252057,-!p1@KLF4!0.84!101.75!KLF4;;chr9:102584159..102584174,+!p2@NR4A3!0.84!11.19!NR4A3;;chr10:28032421..28032494,-!p2@MKX!0.84!5.91!MKX;;chr10:28035133..28035148,-!p3@MKX!0.84!5.91!MKX;;chr11:46299539..46299620,+!p2@CREB3L1!0.83!10.13!CREB3L1;;chr8:72756213..72756243,-!p5@MSC!0.83!7.60!MSC;;chr19:45260775..45260838,+!p5@BCL3!0.83!7.60!BCL3;;chr2:85980919..85980942,+!p4@ATOH8!0.83!6.12!ATOH8;;chr12:54393880..54393962,+!p1@HOXC9!0.83!5.70!HOXC9;;chr8:72756063..72756125,-!p1@MSC!0.82!11.82!MSC;;chr15:66994615..66994630,+!p3@SMAD6!0.82!8.23!SMAD6;;chr7:28448965..28448994,+!p2@CREB5!0.81!20.69!CREB5;;chr17:38498594..38498661,+!p2@RARA!0.81!19.42!RARA;;chr1:170632137..170632172,+!p10@PRRX1!0.81!5.49!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.81!5.49!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.49!ZFY;;chr19:12902289..12902307,+!p1@JUNB!0.80!1319.21!JUNB;;chr10:77161504..77161530,-!p1@ZNF503!0.80!76.63!ZNF503;;chr11:65687362..65687436,+!p3@DRAP1!0.80!25.97!DRAP1;;chr18:22932080..22932170,-!p1@ZNF521!0.80!24.28!ZNF521;;chr11:65667884..65667895,-!p2@FOSL1!0.80!22.38!FOSL1;;chr10:63809077..63809089,+!p5@ARID5B!0.80!12.24!ARID5B;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.28!KDM5D;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.39!FOXF2;;chr8:48650715..48650735,-!p1@CEBPD!0.78!695.18!CEBPD;;chr19:16435625..16435682,+!p1@KLF2!0.78!178.60!KLF2;;chr6:19837592..19837621,+!p1@ID4!0.78!33.14!ID4;;chr15:83953397..83953425,-!p1@BNC1!0.78!5.91!BNC1;;chr14:75746781..75746799,+!p6@FOS!0.78!5.07!FOS;;chr14:75747296..75747329,+!p4@FOS!0.78!5.07!FOS;;chr19:16435705..16435726,+!p3@KLF2!0.78!5.07!KLF2;;chr7:15726296..15726315,-!p1@MEOX2!0.78!5.07!MEOX2;;chr21:38071430..38071456,+!p1@SIM2!0.78!5.07!SIM2;;chr1:59249688..59249703,-!p3@JUN!0.77!31.88!JUN;;chr1:23696308..23696339,-!p2@ZNF436!0.77!10.98!ZNF436;;chr7:28448995..28449011,+!p4@CREB5!0.77!7.18!CREB5;;chr1:170632115..170632136,+!p9@PRRX1!0.77!4.86!PRRX1;;chr21:40032884..40032915,-!p2@ERG!0.77!4.86!ERG;;chr12:54772960..54773015,-!p3@ZNF385A!0.76!25.33!ZNF385A;;chr14:75894714..75894733,+!p1@JDP2!0.75!146.72!JDP2;;chr10:31610110..31610159,+!p2@ZEB1!0.75!4.64!ZEB1;;chr2:45236579..45236596,-!p2@SIX2!0.75!4.64!SIX2;;chr7:27205106..27205134,-!p2@HOXA9!0.75!4.64!HOXA9;;chr3:193853927..193853944,+!p1@HES1!0.74!162.76!HES1;;chr16:54320617..54320643,-!p3@IRX3!0.74!5.91!IRX3;;chr1:170632762..170632786,+!p13@PRRX1!0.74!4.43!PRRX1;;chr9:14314476..14314487,-!p9@NFIB!0.74!4.43!NFIB;;chr6:126240380..126240430,+!p2@NCOA7!0.73!12.46!NCOA7;;chr15:57511609..57511651,+!p2@TCF12!0.73!7.81!TCF12;;chr9:73028814..73028895,-!p1@KLF9!0.72!47.08!KLF9;;chr19:45504688..45504782,+!p1@RELB!0.72!28.50!RELB;;chr9:14083467..14083483,-!p4@NFIB!0.72!11.40!NFIB;;chr2:85981222..85981259,+!p2@ATOH8!0.72!7.39!ATOH8;;chr9:102584241..102584261,+!p4@NR4A3!0.72!6.97!NR4A3;;chr10:63851669..63851682,+!p10@ARID5B!0.72!4.64!ARID5B;;chr10:114886551..114886601,+!p11@TCF7L2!0.72!4.22!TCF7L2;;chr13:37494275..37494304,-!p2@SMAD9!0.72!4.22!SMAD9;;chr2:85981107..85981120,+!p3@ATOH8!0.72!4.22!ATOH8;;chr1:44513995..44514031,+!p1@KLF17!0.72!4.22!KLF17;;chr15:66994885..66994904,+!p7@SMAD6!0.72!4.22!SMAD6;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.63!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.71!14.36!AHRR;;chr9:110251836..110251887,-!p4@KLF4!0.71!5.70!KLF4;;chr5:137800878..137800898,+!p6@EGR1!0.71!5.07!EGR1;;chr20:30193083..30193098,+!p1@ID1!0.70!372.39!ID1;;chr8:49833978..49833996,-!p1@SNAI2!0.70!93.10!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.70!29.13!SNAI2;;chr9:110250697..110250738,-!p2@KLF4!0.70!4.86!KLF4;;chr7:27205136..27205164,-!p1@HOXA9!0.70!4.01!HOXA9;;chr8:72756380..72756427,-!p8@MSC!0.70!4.01!MSC;;chr2:178128149..178128198,-!p2@NFE2L2!0.69!23.64!NFE2L2;;chr2:28618532..28618610,+!p4@FOSL2!0.69!7.18!FOSL2;;chr1:158969752..158969780,+!p6@IFI16!0.69!7.18!IFI16;;chr12:52448213..52448262,+!p6@NR4A1!0.68!3.80!NR4A1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.68!3.80!SEBOX;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.67!6.54!MEIS3P1;;chr19:13136130..13136165,+!p6@NFIX!0.67!5.07!NFIX;;chr5:137804130..137804156,+!p5@EGR1!0.67!4.01!EGR1;;chr19:13134457..13134462,+!p5@NFIX!0.66!6.97!NFIX;;chr19:13136241..13136258,+!p7@NFIX!0.66!5.07!NFIX;;chr10:131635619..131635623,-!p6@EBF3!0.66!3.59!EBF3;;chr10:28034772..28034783,-!p4@MKX!0.66!3.59!MKX;;chr6:1612300..1612324,+!p3@FOXC1!0.66!3.59!FOXC1;;chr2:68592406..68592424,+!p1@PLEK!0.66!3.59!PLEK;;chr4:174451370..174451387,-!p1@HAND2!0.66!3.59!HAND2;;chr4:26324474..26324501,+!p16@RBPJ!0.66!3.59!RBPJ;;chr3:101568349..101568365,+!p1@NFKBIZ!0.65!211.95!NFKBIZ;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.56!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!0.65!6.54!DRAP1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.12!MEIS3;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.43!BNC2;;chr5:137804357..137804390,+!p4@EGR1!0.65!4.22!EGR1;;chr7:1577111..1577132,+!p4@MAFK!0.65!4.01!MAFK;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!28.71!ZMAT3;;chr10:77161650..77161661,-!p4@ZNF503!0.64!5.07!ZNF503;;chr10:31607702..31607755,+!p3@ZEB1!0.64!4.01!ZEB1;;chr10:131762385..131762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| |expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.83!66.71!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.79!78.32!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.78!66.71!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.68!126.45!TWIST1;;chr10:28034739..28034756,-!p1@MKX!1.66!45.18!MKX;;chr14:61116183..61116208,-!p1@SIX1!1.63!150.94!SIX1;;chr12:52445218..52445237,+!p1@NR4A1!1.59!456.41!NR4A1;;chr8:22550982..22550999,-!p1@EGR3!1.57!100.07!EGR3;;chr19:13134772..13134822,+!p2@NFIX!1.44!38.21!NFIX;;chr17:48072574..48072597,-!p1@DLX3!1.42!25.33!DLX3;;chr2:239756671..239756732,+!p1@TWIST2!1.41!77.48!TWIST2;;chr5:137804484..137804498,+!p2@EGR1!1.37!87.19!EGR1;;chr2:45236540..45236577,-!p1@SIX2!1.37!22.59!SIX2;;chr10:131762504..131762555,-!p1@EBF3!1.36!21.74!EBF3;;chr5:158526917..158526932,-!p1@EBF1!1.35!52.99!EBF1;;chr14:75746722..75746777,+!p2@FOS!1.35!27.23!FOS;;chr12:54380404..54380433,+!p3@HOXC10!1.26!17.31!HOXC10;;chr21:39821025..39821046,-!p9@ERG!1.25!16.89!ERG;;chr14:75745523..75745537,+!p1@FOS!1.24!1921.08!FOS;;chr6:1610293..1610310,+!p1@FOXC1!1.23!26.81!FOXC1;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.83!PITX1;;chr12:53614115..53614154,-!p1@RARG!1.22!82.54!RARG;;chr7:19157043..19157088,-!p2@TWIST1!1.22!39.27!TWIST1;;chr1:170632959..170632987,+!p4@PRRX1!1.22!17.10!PRRX1;;chr6:85474299..85474324,-!p1@TBX18!1.21!27.02!TBX18;;chr2:239756739..239756755,+!p2@TWIST2!1.19!24.49!TWIST2;;chr16:79634624..79634642,-!p1@MAF!1.18!55.31!MAF;;chr1:170632477..170632506,+!p6@PRRX1!1.17!13.72!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.27!FOXQ1;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!62.91!CREB3L1;;chr10:131762410..131762436,-!p2@EBF3!1.12!12.24!EBF3;;chr5:134369905..134369972,-!p1@PITX1!1.11!18.37!PITX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.10!11.61!SEBOX;;chr4:26323870..26323885,+!p13@RBPJ!1.10!11.61!RBPJ;;chr1:170633058..170633084,+!p5@PRRX1!1.10!11.61!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.09!11.19!EMX2;;chr4:26323764..26323821,+!p15@RBPJ!1.08!10.98!RBPJ;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.77!HOXC5;;chr7:27213893..27213954,-!p1@HOXA10!1.06!10.56!HOXA10;;chr17:7492684..7492778,-!p2@SOX15!1.05!21.96!SOX15;;chr16:79633894..79633954,-!p3@MAF!1.05!19.84!MAF;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.64!NFATC4;;chr1:170633348..170633399,+!p2@PRRX1!1.04!13.51!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!1.03!15.20!OSR2;;chr16:79634595..79634620,-!p2@MAF!1.02!17.31!MAF;;chr18:22932004..22932021,-!p2@ZNF521!1.02!9.50!ZNF521;;chr3:25470156..25470227,+!p2@RARB!1.02!9.50!RARB;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.29!HOXD8;;chr19:45971246..45971265,+!p1@FOSB!1.00!171.00!FOSB;;chr15:66994663..66994680,+!p1@SMAD6!1.00!21.74!SMAD6;;chr5:137801160..137801176,+!p1@EGR1!0.99!896.57!EGR1;;chr12:54378923..54378966,+!p1@HOXC10!0.98!8.66!HOXC10;;chr19:50432453..50432468,+!p1@ATF5!0.97!482.17!ATF5;;chr7:27192185..27192209,-!p1@HOXA3!0.97!8.23!HOXA3;;chr1:23885981..23886002,-!p1@ID3!0.96!1457.28!ID3;;chr7:44143925..44143970,+!p1@AEBP1!0.96!184.93!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.96!90.14!MAFF;;chr1:170633262..170633285,+!p3@PRRX1!0.96!9.29!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.02!PRRX1;;chr10:63853436..63853442,+!p4@ARID5B!0.95!43.91!ARID5B;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.68!EGR2;;chr8:72756667..72756736,-!p2@MSC!0.95!12.67!MSC;;chr8:72756637..72756664,-!p3@MSC!0.95!9.08!MSC;;chr5:158527104..158527135,-!p4@EBF1!0.95!7.81!EBF1;;chr2:176973498..176973524,+!p1@HOXD10!0.95!7.81!HOXD10;;chr14:61116168..61116180,-!p2@SIX1!0.94!8.87!SIX1;;chr4:26322267..26322334,+!p3@RBPJ!0.93!18.58!RBPJ;;chr8:72756267..72756296,-!p4@MSC!0.93!11.19!MSC;;chr20:51588873..51588953,+!p1@TSHZ2!0.93!10.13!TSHZ2;;chr7:15725757..15725828,-!p5@MEOX2!0.92!7.39!MEOX2;;chr2:8822176..8822196,+!p1@ID2!0.91!1034.85!ID2;;chr2:191878874..191878938,-!p1@STAT1!0.90!388.86!STAT1;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!84.87!PLAGL1;;chr7:27196267..27196311,-!p1@HOXA7!0.90!6.97!HOXA7;;chr6:126240442..126240459,+!p4@NCOA7!0.89!8.87!NCOA7;;chr10:63809106..63809127,+!p1@ARID5B!0.88!93.52!ARID5B;;chr12:53625966..53626012,-!p2@RARG!0.88!18.16!RARG;;chr15:66994561..66994597,+!p2@SMAD6!0.88!16.26!SMAD6;;chr7:44143997..44144008,+!p3@AEBP1!0.88!8.44!AEBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.88!7.18!SHOX2;;chr10:28035112..28035130,-!p5@MKX!0.88!6.54!MKX;;chr12:52448420..52448460,+!p5@NR4A1!0.88!6.54!NR4A1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.88!6.54!HOXC5;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.87!67.13!GLIS2;;chr7:44143978..44143989,+!p2@AEBP1!0.87!12.24!AEBP1;;chr19:50435736..50435781,+!p3@ATF5!0.87!9.08!ATF5;;chr1:170632723..170632739,+!p8@PRRX1!0.87!6.33!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.86!153.26!NFIX;;chr9:102584262..102584276,+!p1@NR4A3!0.86!14.57!NR4A3;;chr10:63809013..63809041,+!p3@ARID5B!0.85!35.68!ARID5B;;chr1:119530706..119530736,-!p3@TBX15!0.85!6.12!TBX15;;chr9:110252035..110252057,-!p1@KLF4!0.84!101.75!KLF4;;chr9:102584159..1025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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000214;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11368-117I9 | |id=FF:11368-117I9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000187 | ||
|is_obsolete= | |||
|library_id=CNhs11992 | |||
|library_id_phase_based=2:CNhs11992 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11368 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GGTAGC.11368 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11368 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GGTAGC.11368 | |||
|name=Synoviocyte, donor2 | |name=Synoviocyte, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11992,LSID837,release011,COMPLETED | |profile_hcage=CNhs11992,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA408-R10a | |rna_catalog_number=CA408-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117I9 | |rna_tube_id=117I9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GGTAGC | |||
|sample_age=57 | |sample_age=57 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=synovium | |sample_tissue=synovium | ||
|top_motifs=ESR1:2.25820900196;ALX4:2.12335028849;HES1:2.11443110855;UFEwm:1.85992408126;PAX1,9:1.760527234;TFAP4:1.74412095869;FOXL1:1.70654533408;EVI1:1.66743143849;TAL1_TCF{3,4,12}:1.60738324278;EN1,2:1.57645713674;HMX1:1.51806010073;GLI1..3:1.46612769109;ATF6:1.42821688086;ZNF238:1.4229243416;RXR{A,B,G}:1.37420544136;MTF1:1.28946384558;TBP:1.27027709282;HOX{A4,D4}:1.25626202499;GCM1,2:1.20246435066;TFCP2:1.13424951499;MYBL2:1.11914535647;HSF1,2:1.09706264226;KLF4:1.0392143761;STAT2,4,6:1.03467531991;RREB1:0.985078880194;TLX1..3_NFIC{dimer}:0.972640764184;XBP1:0.966447279316;FOXO1,3,4:0.956258139543;IKZF1:0.956110717995;HOX{A6,A7,B6,B7}:0.945276036953;GFI1B:0.924028704821;TEAD1:0.890141914415;NFATC1..3:0.888244875307;MAFB:0.887800078089;ZNF423:0.887360443798;PRDM1:0.884561585571;SMAD1..7,9:0.822624763072;HIF1A:0.774237589459;TFAP2B:0.765480998414;IRF1,2:0.751556632362;EBF1:0.749675590337;GZF1:0.740469669143;NR6A1:0.707904526318;TEF:0.697711330273;ZIC1..3:0.697196481248;TFAP2{A,C}:0.695677317511;GTF2I:0.682618347072;NANOG{mouse}:0.663091779663;SRF:0.643958059346;RXRA_VDR{dimer}:0.641626781684;POU6F1:0.633945144453;ESRRA:0.59882020264;HMGA1,2:0.589105022565;HOX{A5,B5}:0.583715491875;PAX4:0.560988088607;NKX3-1:0.552530820738;GTF2A1,2:0.518299250259;PAX5:0.492085286456;HAND1,2:0.487357705584;MTE{core}:0.474806754803;NR1H4:0.463621376231;HIC1:0.444343707485;ZBTB6:0.429899562652;XCPE1{core}:0.418998408066;MYFfamily:0.406475238354;VSX1,2:0.403991082877;NFE2L1:0.39283152207;PATZ1:0.378362718428;MAZ:0.364879173476;ZNF148:0.348235403134;TP53:0.341378769936;HLF:0.340987465092;ZNF384:0.338968294929;CDC5L:0.328886845302;NR3C1:0.300141707848;CDX1,2,4:0.299401866213;GATA4:0.295796362004;POU5F1:0.293207285293;NKX2-2,8:0.283996452953;TOPORS:0.241709276314;NKX2-1,4:0.224243812208;CEBPA,B_DDIT3:0.175193518491;TBX4,5:0.171731291945;SPZ1:0.131882222808;NFIL3:0.123075871537;EGR1..3:0.121901701637;LHX3,4:0.08888244817;FOXP3:0.0834436346629;AR:0.0808194175457;MZF1:0.0575933029302;TLX2:0.0487067189056;LMO2:0.0400899754624;bHLH_family:0.0400727466352;NFKB1_REL_RELA:0.0298489606442;REST:0.019736162959;PPARG:0.00892259608011;NHLH1,2:-0.0188620232141;MED-1{core}:-0.0207087122047;RUNX1..3:-0.0468374174134;AIRE:-0.0475530738626;MEF2{A,B,C,D}:-0.101759967517;BPTF:-0.103276716854;YY1:-0.131417298624;BACH2:-0.156566472993;NKX3-2:-0.169872653446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.173289544304;EP300:-0.177839105592;FOS_FOS{B,L1}_JUN{B,D}:-0.200309347025;FOXM1:-0.20512564488;IRF7:-0.213225509612;SP1:-0.231217474183;HNF4A_NR2F1,2:-0.231677841664;HBP1_HMGB_SSRP1_UBTF:-0.237455834675;NFE2L2:-0.241782525941;FOXQ1:-0.250428511158;HNF1A:-0.257476966326;FOSL2:-0.263565868025;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26548338016;ARID5B:-0.277879943706;RBPJ:-0.283466021371;ATF4:-0.291186786561;FOXD3:-0.297239157071;ATF5_CREB3:-0.298418686964;DMAP1_NCOR{1,2}_SMARC:-0.326409207947;SREBF1,2:-0.330666774395;RFX1:-0.344322189346;PDX1:-0.357759654379;AHR_ARNT_ARNT2:-0.366293629894;FOX{F1,F2,J1}:-0.376442456184;FOXP1:-0.424488330317;MYB:-0.443168223599;FOX{D1,D2}:-0.446677068925;IKZF2:-0.459239715918;FOX{I1,J2}:-0.476065838712;NFE2:-0.488701096684;SPI1:-0.494920351197;BREu{core}:-0.504734981915;NR5A1,2:-0.505710622242;SOX5:-0.514745350213;HOXA9_MEIS1:-0.54749269594;SOX17:-0.552788276673;ETS1,2:-0.584478808117;LEF1_TCF7_TCF7L1,2:-0.584961765704;SPIB:-0.603699528698;JUN:-0.603830081505;PRRX1,2:-0.607047486723;STAT5{A,B}:-0.61723438955;ATF2:-0.625545503161;CRX:-0.638480877545;ZBTB16:-0.647293564779;ZFP161:-0.647554997209;ONECUT1,2:-0.654072940221;CREB1:-0.657176130475;SNAI1..3:-0.6769601708;TFDP1:-0.699165511059;PAX3,7:-0.715190330372;ELK1,4_GABP{A,B1}:-0.783693764674;PITX1..3:-0.785188747054;POU3F1..4:-0.79876967463;STAT1,3:-0.800815179782;PAX6:-0.816203826705;DBP:-0.881651747329;NKX2-3_NKX2-5:-0.907825118686;T:-0.916357059395;ZEB1:-0.93245746419;ZNF143:-0.932627260324;POU1F1:-0.935495704913;PAX2:-0.936206328431;ADNP_IRX_SIX_ZHX:-0.946133521387;NRF1:-0.949200663637;E2F1..5:-0.953228707197;FOXN1:-0.954426982426;RFX2..5_RFXANK_RFXAP:-0.967607223254;GFI1:-0.985305381911;NKX6-1,2:-1.04089159633;NFIX:-1.07817320453;ELF1,2,4:-1.08855138203;RORA:-1.10452958428;TGIF1:-1.10720137466;MYOD1:-1.20015327893;FOXA2:-1.21510833749;CUX2:-1.22960394556;SOX2:-1.25226719824;POU2F1..3:-1.36352784362;PBX1:-1.39516844782;GATA6:-1.45890288173;PAX8:-1.46011807604;SOX{8,9,10}:-1.50496534442;NFY{A,B,C}:-1.6397273449;OCT4_SOX2{dimer}:-1.68682710152;ALX1:-1.7151800289;NANOG:-2.1840520029 | |top_motifs=ESR1:2.25820900196;ALX4:2.12335028849;HES1:2.11443110855;UFEwm:1.85992408126;PAX1,9:1.760527234;TFAP4:1.74412095869;FOXL1:1.70654533408;EVI1:1.66743143849;TAL1_TCF{3,4,12}:1.60738324278;EN1,2:1.57645713674;HMX1:1.51806010073;GLI1..3:1.46612769109;ATF6:1.42821688086;ZNF238:1.4229243416;RXR{A,B,G}:1.37420544136;MTF1:1.28946384558;TBP:1.27027709282;HOX{A4,D4}:1.25626202499;GCM1,2:1.20246435066;TFCP2:1.13424951499;MYBL2:1.11914535647;HSF1,2:1.09706264226;KLF4:1.0392143761;STAT2,4,6:1.03467531991;RREB1:0.985078880194;TLX1..3_NFIC{dimer}:0.972640764184;XBP1:0.966447279316;FOXO1,3,4:0.956258139543;IKZF1:0.956110717995;HOX{A6,A7,B6,B7}:0.945276036953;GFI1B:0.924028704821;TEAD1:0.890141914415;NFATC1..3:0.888244875307;MAFB:0.887800078089;ZNF423:0.887360443798;PRDM1:0.884561585571;SMAD1..7,9:0.822624763072;HIF1A:0.774237589459;TFAP2B:0.765480998414;IRF1,2:0.751556632362;EBF1:0.749675590337;GZF1:0.740469669143;NR6A1:0.707904526318;TEF:0.697711330273;ZIC1..3:0.697196481248;TFAP2{A,C}:0.695677317511;GTF2I:0.682618347072;NANOG{mouse}:0.663091779663;SRF:0.643958059346;RXRA_VDR{dimer}:0.641626781684;POU6F1:0.633945144453;ESRRA:0.59882020264;HMGA1,2:0.589105022565;HOX{A5,B5}:0.583715491875;PAX4:0.560988088607;NKX3-1:0.552530820738;GTF2A1,2:0.518299250259;PAX5:0.492085286456;HAND1,2:0.487357705584;MTE{core}:0.474806754803;NR1H4:0.463621376231;HIC1:0.444343707485;ZBTB6:0.429899562652;XCPE1{core}:0.418998408066;MYFfamily:0.406475238354;VSX1,2:0.403991082877;NFE2L1:0.39283152207;PATZ1:0.378362718428;MAZ:0.364879173476;ZNF148:0.348235403134;TP53:0.341378769936;HLF:0.340987465092;ZNF384:0.338968294929;CDC5L:0.328886845302;NR3C1:0.300141707848;CDX1,2,4:0.299401866213;GATA4:0.295796362004;POU5F1:0.293207285293;NKX2-2,8:0.283996452953;TOPORS:0.241709276314;NKX2-1,4:0.224243812208;CEBPA,B_DDIT3:0.175193518491;TBX4,5:0.171731291945;SPZ1:0.131882222808;NFIL3:0.123075871537;EGR1..3:0.121901701637;LHX3,4:0.08888244817;FOXP3:0.0834436346629;AR:0.0808194175457;MZF1:0.0575933029302;TLX2:0.0487067189056;LMO2:0.0400899754624;bHLH_family:0.0400727466352;NFKB1_REL_RELA:0.0298489606442;REST:0.019736162959;PPARG:0.00892259608011;NHLH1,2:-0.0188620232141;MED-1{core}:-0.0207087122047;RUNX1..3:-0.0468374174134;AIRE:-0.0475530738626;MEF2{A,B,C,D}:-0.101759967517;BPTF:-0.103276716854;YY1:-0.131417298624;BACH2:-0.156566472993;NKX3-2:-0.169872653446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.173289544304;EP300:-0.177839105592;FOS_FOS{B,L1}_JUN{B,D}:-0.200309347025;FOXM1:-0.20512564488;IRF7:-0.213225509612;SP1:-0.231217474183;HNF4A_NR2F1,2:-0.231677841664;HBP1_HMGB_SSRP1_UBTF:-0.237455834675;NFE2L2:-0.241782525941;FOXQ1:-0.250428511158;HNF1A:-0.257476966326;FOSL2:-0.263565868025;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26548338016;ARID5B:-0.277879943706;RBPJ:-0.283466021371;ATF4:-0.291186786561;FOXD3:-0.297239157071;ATF5_CREB3:-0.298418686964;DMAP1_NCOR{1,2}_SMARC:-0.326409207947;SREBF1,2:-0.330666774395;RFX1:-0.344322189346;PDX1:-0.357759654379;AHR_ARNT_ARNT2:-0.366293629894;FOX{F1,F2,J1}:-0.376442456184;FOXP1:-0.424488330317;MYB:-0.443168223599;FOX{D1,D2}:-0.446677068925;IKZF2:-0.459239715918;FOX{I1,J2}:-0.476065838712;NFE2:-0.488701096684;SPI1:-0.494920351197;BREu{core}:-0.504734981915;NR5A1,2:-0.505710622242;SOX5:-0.514745350213;HOXA9_MEIS1:-0.54749269594;SOX17:-0.552788276673;ETS1,2:-0.584478808117;LEF1_TCF7_TCF7L1,2:-0.584961765704;SPIB:-0.603699528698;JUN:-0.603830081505;PRRX1,2:-0.607047486723;STAT5{A,B}:-0.61723438955;ATF2:-0.625545503161;CRX:-0.638480877545;ZBTB16:-0.647293564779;ZFP161:-0.647554997209;ONECUT1,2:-0.654072940221;CREB1:-0.657176130475;SNAI1..3:-0.6769601708;TFDP1:-0.699165511059;PAX3,7:-0.715190330372;ELK1,4_GABP{A,B1}:-0.783693764674;PITX1..3:-0.785188747054;POU3F1..4:-0.79876967463;STAT1,3:-0.800815179782;PAX6:-0.816203826705;DBP:-0.881651747329;NKX2-3_NKX2-5:-0.907825118686;T:-0.916357059395;ZEB1:-0.93245746419;ZNF143:-0.932627260324;POU1F1:-0.935495704913;PAX2:-0.936206328431;ADNP_IRX_SIX_ZHX:-0.946133521387;NRF1:-0.949200663637;E2F1..5:-0.953228707197;FOXN1:-0.954426982426;RFX2..5_RFXANK_RFXAP:-0.967607223254;GFI1:-0.985305381911;NKX6-1,2:-1.04089159633;NFIX:-1.07817320453;ELF1,2,4:-1.08855138203;RORA:-1.10452958428;TGIF1:-1.10720137466;MYOD1:-1.20015327893;FOXA2:-1.21510833749;CUX2:-1.22960394556;SOX2:-1.25226719824;POU2F1..3:-1.36352784362;PBX1:-1.39516844782;GATA6:-1.45890288173;PAX8:-1.46011807604;SOX{8,9,10}:-1.50496534442;NFY{A,B,C}:-1.6397273449;OCT4_SOX2{dimer}:-1.68682710152;ALX1:-1.7151800289;NANOG:-2.1840520029 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11368-117I9;search_select_hide=table117:FF:11368-117I9 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Synoviocyte, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11992 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11992
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11992
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.966 |
| 10 | 10 | 0.475 |
| 100 | 100 | 0.937 |
| 101 | 101 | 0.331 |
| 102 | 102 | 0.142 |
| 103 | 103 | 0.401 |
| 104 | 104 | 0.76 |
| 105 | 105 | 0.0921 |
| 106 | 106 | 0.0856 |
| 107 | 107 | 0.03 |
| 108 | 108 | 0.104 |
| 109 | 109 | 0.553 |
| 11 | 11 | 0.406 |
| 110 | 110 | 0.959 |
| 111 | 111 | 0.956 |
| 112 | 112 | 0.534 |
| 113 | 113 | 0.0639 |
| 114 | 114 | 0.113 |
| 115 | 115 | 0.00638 |
| 116 | 116 | 0.00435 |
| 117 | 117 | 0.424 |
| 118 | 118 | 0.817 |
| 119 | 119 | 0.955 |
| 12 | 12 | 0.557 |
| 120 | 120 | 0.531 |
| 121 | 121 | 0.168 |
| 122 | 122 | 0.0618 |
| 123 | 123 | 0.0517 |
| 124 | 124 | 0.146 |
| 125 | 125 | 0.514 |
| 126 | 126 | 0.425 |
| 127 | 127 | 0.563 |
| 128 | 128 | 0.0386 |
| 129 | 129 | 0.752 |
| 13 | 13 | 0.679 |
| 130 | 130 | 0.143 |
| 131 | 131 | 0.356 |
| 132 | 132 | 0.0786 |
| 133 | 133 | 0.16 |
| 134 | 134 | 0.543 |
| 135 | 135 | 0.435 |
| 136 | 136 | 0.755 |
| 137 | 137 | 0.602 |
| 138 | 138 | 0.548 |
| 139 | 139 | 0.265 |
| 14 | 14 | 0.75 |
| 140 | 140 | 0.375 |
| 141 | 141 | 0.731 |
| 142 | 142 | 0.326 |
| 143 | 143 | 0.576 |
| 144 | 144 | 0.185 |
| 145 | 145 | 0.606 |
| 146 | 146 | 0.167 |
| 147 | 147 | 0.393 |
| 148 | 148 | 0.863 |
| 149 | 149 | 0.0013 |
| 15 | 15 | 0.964 |
| 150 | 150 | 0.305 |
| 151 | 151 | 0.316 |
| 152 | 152 | 0.0245 |
| 153 | 153 | 0.208 |
| 154 | 154 | 0.834 |
| 155 | 155 | 0.935 |
| 156 | 156 | 0.765 |
| 157 | 157 | 0.871 |
| 158 | 158 | 0.00816 |
| 159 | 159 | 0.597 |
| 16 | 16 | 0.025 |
| 160 | 160 | 0.603 |
| 161 | 161 | 0.94 |
| 162 | 162 | 0.684 |
| 163 | 163 | 0.942 |
| 164 | 164 | 0.0565 |
| 165 | 165 | 0.406 |
| 166 | 166 | 0.0101 |
| 167 | 167 | 0.875 |
| 168 | 168 | 0.658 |
| 169 | 169 | 0.012 |
| 17 | 17 | 0.312 |
| 18 | 18 | 0.414 |
| 19 | 19 | 0.00327 |
| 2 | 2 | 0.152 |
| 20 | 20 | 0.465 |
| 21 | 21 | 0.0445 |
| 22 | 22 | 0.108 |
| 23 | 23 | 0.107 |
| 24 | 24 | 0.135 |
| 25 | 25 | 0.234 |
| 26 | 26 | 0.413 |
| 27 | 27 | 0.297 |
| 28 | 28 | 0.283 |
| 29 | 29 | 0.224 |
| 3 | 3 | 0.495 |
| 30 | 30 | 0.33 |
| 31 | 31 | 0.393 |
| 32 | 32 | 9.27558e-11 |
| 33 | 33 | 0.847 |
| 34 | 34 | 0.55 |
| 35 | 35 | 0.933 |
| 36 | 36 | 0.0515 |
| 37 | 37 | 0.124 |
| 38 | 38 | 0.622 |
| 39 | 39 | 0.126 |
| 4 | 4 | 0.495 |
| 40 | 40 | 0.231 |
| 41 | 41 | 0.29 |
| 42 | 42 | 0.623 |
| 43 | 43 | 0.565 |
| 44 | 44 | 0.122 |
| 45 | 45 | 0.697 |
| 46 | 46 | 0.456 |
| 47 | 47 | 0.427 |
| 48 | 48 | 0.763 |
| 49 | 49 | 0.915 |
| 5 | 5 | 0.843 |
| 50 | 50 | 0.447 |
| 51 | 51 | 0.829 |
| 52 | 52 | 0.341 |
| 53 | 53 | 0.244 |
| 54 | 54 | 0.688 |
| 55 | 55 | 0.411 |
| 56 | 56 | 0.567 |
| 57 | 57 | 0.915 |
| 58 | 58 | 0.583 |
| 59 | 59 | 0.0999 |
| 6 | 6 | 0.139 |
| 60 | 60 | 0.225 |
| 61 | 61 | 0.365 |
| 62 | 62 | 0.95 |
| 63 | 63 | 0.162 |
| 64 | 64 | 0.889 |
| 65 | 65 | 0.288 |
| 66 | 66 | 0.026 |
| 67 | 67 | 0.969 |
| 68 | 68 | 0.21 |
| 69 | 69 | 0.624 |
| 7 | 7 | 0.187 |
| 70 | 70 | 0.154 |
| 71 | 71 | 0.728 |
| 72 | 72 | 0.987 |
| 73 | 73 | 0.0148 |
| 74 | 74 | 0.249 |
| 75 | 75 | 0.877 |
| 76 | 76 | 0.504 |
| 77 | 77 | 0.00305 |
| 78 | 78 | 0.0731 |
| 79 | 79 | 0.00176 |
| 8 | 8 | 0.121 |
| 80 | 80 | 0.113 |
| 81 | 81 | 0.687 |
| 82 | 82 | 0.477 |
| 83 | 83 | 0.398 |
| 84 | 84 | 0.995 |
| 85 | 85 | 0.0158 |
| 86 | 86 | 0.564 |
| 87 | 87 | 0.54 |
| 88 | 88 | 0.241 |
| 89 | 89 | 0.0188 |
| 9 | 9 | 0.427 |
| 90 | 90 | 0.136 |
| 91 | 91 | 0.985 |
| 92 | 92 | 0.129 |
| 93 | 93 | 0.697 |
| 94 | 94 | 0.389 |
| 95 | 95 | 0.862 |
| 96 | 96 | 0.69 |
| 97 | 97 | 0.626 |
| 98 | 98 | 0.783 |
| 99 | 99 | 0.0622 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11992
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000187 human synovial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000187 (human synovial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
