FF:11368-117I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005012 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005012 | ||
|accession_numbers=CAGE;DRX008517;DRR009389;DRZ000814;DRZ002199;DRZ012164;DRZ013549 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037054;DRR041420;DRZ007062 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000187 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11368-117I9 | |id=FF:11368-117I9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000187 | ||
|is_obsolete= | |||
|library_id=CNhs11992 | |||
|library_id_phase_based=2:CNhs11992 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11368 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GGTAGC.11368 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11368 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GGTAGC.11368 | |||
|name=Synoviocyte, donor2 | |name=Synoviocyte, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11992,LSID837,release011,COMPLETED | |profile_hcage=CNhs11992,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10004,,, | |profile_srnaseq=SRhi10004,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.076482668715787,0,0,0,0,0.436884115707795,0,-0.017778689578954,0.231699979954976,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658841278836904,0,0,0,0,0,0.450221587552677,0,0,0.0801154629212606,0,0,0,0,0,0,0,0,0,0,0.0831827421014,0,0.26436037945528,0.218225194255328,0.0831827421014,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.0831827421014,0,0.0831827421014,0.0831827421014,0.476389789368107,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0.213072052700123,0,0,0,0,0,0,0.0831827421014,0.0415913710507,0,0,0,0,0,0,0.076482668715787,0,0.0831827421014,-0.0583439077884922,0.138766751763476,0,0.213072052700123,0.076482668715787,0.0831827421014,0.0549299861938676,0.122234639578224,0,0,0,0,0,0,0.152965337431574,0,0,0,0,0.0831827421014,0,0,0,0,0,0.400708421379631,0,0,0,0.129697286453911,0.193934059305003,0,0,0.0831827421014,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA408-R10a | |rna_catalog_number=CA408-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117I9 | |rna_tube_id=117I9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10004.GGTAGC | |||
|sample_age=57 | |sample_age=57 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89838198745311e-223!GO:0005737;cytoplasm;2.23382996240353e-181!GO:0043231;intracellular membrane-bound organelle;1.60500393121719e-141!GO:0043227;membrane-bound organelle;1.60500393121719e-141!GO:0043226;organelle;4.90988096157757e-140!GO:0043229;intracellular organelle;1.36413311812551e-139!GO:0044444;cytoplasmic part;4.4310123194114e-136!GO:0044422;organelle part;2.26159507384372e-99!GO:0044446;intracellular organelle part;8.42190043580183e-98!GO:0005515;protein binding;5.03374397849716e-78!GO:0032991;macromolecular complex;2.67790518482208e-71!GO:0030529;ribonucleoprotein complex;1.29254031516759e-68!GO:0044237;cellular metabolic process;8.86116163290768e-66!GO:0044238;primary metabolic process;3.14019575038059e-65!GO:0043170;macromolecule metabolic process;1.84122242020673e-60!GO:0005739;mitochondrion;3.84399914286022e-60!GO:0043233;organelle lumen;1.3075023088856e-55!GO:0031974;membrane-enclosed lumen;1.3075023088856e-55!GO:0003723;RNA binding;1.12049163742064e-50!GO:0019538;protein metabolic process;5.58856189910589e-48!GO:0031090;organelle membrane;3.9187756241215e-47!GO:0005840;ribosome;7.24694940698604e-46!GO:0044428;nuclear part;2.71959659500192e-45!GO:0006412;translation;2.82503866129228e-44!GO:0044260;cellular macromolecule metabolic process;6.07789877865695e-43!GO:0044267;cellular protein metabolic process;2.3229693546016e-41!GO:0003735;structural constituent of ribosome;8.2730830949549e-41!GO:0044429;mitochondrial part;3.52931368196006e-40!GO:0005829;cytosol;5.94896439915806e-40!GO:0005634;nucleus;1.01085229442366e-39!GO:0016043;cellular component organization and biogenesis;4.47751303141758e-39!GO:0015031;protein transport;1.9073899239689e-38!GO:0033036;macromolecule localization;9.8084228664205e-38!GO:0009059;macromolecule biosynthetic process;1.99261387973191e-37!GO:0045184;establishment of protein localization;9.44250962111226e-37!GO:0033279;ribosomal subunit;1.27857807440096e-36!GO:0009058;biosynthetic process;2.53730279718634e-36!GO:0008104;protein localization;4.20368924107461e-36!GO:0043234;protein complex;1.08842832171511e-34!GO:0044249;cellular biosynthetic process;8.03159291212897e-34!GO:0031967;organelle envelope;3.72516875506366e-32!GO:0031975;envelope;8.81611982483954e-32!GO:0006396;RNA processing;7.37018647191972e-31!GO:0031981;nuclear lumen;1.28186242123928e-29!GO:0005740;mitochondrial envelope;4.49337514641731e-27!GO:0046907;intracellular transport;5.14175584184958e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.17214452791544e-26!GO:0010467;gene expression;1.37989629672361e-26!GO:0016071;mRNA metabolic process;2.22504608041267e-26!GO:0031966;mitochondrial membrane;9.74491463470827e-26!GO:0043283;biopolymer metabolic process;4.52635081827409e-25!GO:0006886;intracellular protein transport;5.6011240529634e-25!GO:0008380;RNA splicing;8.81563696282357e-25!GO:0065003;macromolecular complex assembly;3.21238935616684e-24!GO:0019866;organelle inner membrane;4.54493774505615e-24!GO:0005783;endoplasmic reticulum;3.308164921758e-23!GO:0005743;mitochondrial inner membrane;3.90037207223129e-23!GO:0022607;cellular component assembly;2.01552301173717e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.4825366778231e-22!GO:0006397;mRNA processing;3.57270443156373e-22!GO:0044445;cytosolic part;9.67744565064796e-21!GO:0006119;oxidative phosphorylation;3.29101126972333e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.59656567282795e-19!GO:0015935;small ribosomal subunit;5.07883536653655e-19!GO:0006457;protein folding;1.10956463170131e-18!GO:0015934;large ribosomal subunit;1.41066482611066e-18!GO:0044455;mitochondrial membrane part;3.70541075311515e-18!GO:0005654;nucleoplasm;5.06341231538528e-18!GO:0005681;spliceosome;1.03183674090383e-17!GO:0051641;cellular localization;1.3349683178238e-17!GO:0005794;Golgi apparatus;1.64449386388073e-17!GO:0012505;endomembrane system;1.6562587804046e-17!GO:0048770;pigment granule;1.6562587804046e-17!GO:0042470;melanosome;1.6562587804046e-17!GO:0051649;establishment of cellular localization;2.24589841763023e-17!GO:0006996;organelle organization and biogenesis;1.09067131351435e-16!GO:0008134;transcription factor binding;1.15921544700801e-16!GO:0044432;endoplasmic reticulum part;1.35891832700868e-16!GO:0031980;mitochondrial lumen;4.45826029323374e-16!GO:0005759;mitochondrial matrix;4.45826029323374e-16!GO:0012501;programmed cell death;5.55568593029679e-16!GO:0006915;apoptosis;9.19653611263455e-16!GO:0005746;mitochondrial respiratory chain;9.49341645392646e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.48142284801456e-15!GO:0022618;protein-RNA complex assembly;2.96002217206992e-15!GO:0044451;nucleoplasm part;3.08799456009631e-15!GO:0043228;non-membrane-bound organelle;5.20340892066902e-15!GO:0043232;intracellular non-membrane-bound organelle;5.20340892066902e-15!GO:0043285;biopolymer catabolic process;5.69259396698584e-15!GO:0008219;cell death;7.3310660516387e-15!GO:0016265;death;7.3310660516387e-15!GO:0044265;cellular macromolecule catabolic process;8.17953927742362e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.20412837812974e-15!GO:0051186;cofactor metabolic process;1.63924958345968e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.91672572106435e-14!GO:0016192;vesicle-mediated transport;5.23753442143048e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;6.60810815293522e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.09231559292003e-14!GO:0003954;NADH dehydrogenase activity;7.09231559292003e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.09231559292003e-14!GO:0006512;ubiquitin cycle;1.02111206702387e-13!GO:0044257;cellular protein catabolic process;1.38796261386144e-13!GO:0019941;modification-dependent protein catabolic process;1.38796261386144e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.38796261386144e-13!GO:0009057;macromolecule catabolic process;1.43518286599836e-13!GO:0008135;translation factor activity, nucleic acid binding;2.2976283491259e-13!GO:0044248;cellular catabolic process;2.80520931291617e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.80520931291617e-13!GO:0005761;mitochondrial ribosome;2.80520931291617e-13!GO:0000313;organellar ribosome;2.80520931291617e-13!GO:0016874;ligase activity;3.20340621105364e-13!GO:0030163;protein catabolic process;3.20340621105364e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.20340621105364e-13!GO:0006605;protein targeting;4.23860276839251e-13!GO:0005730;nucleolus;1.26492067552947e-12!GO:0016462;pyrophosphatase activity;1.38124121069699e-12!GO:0048193;Golgi vesicle transport;1.42458688815019e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.49478341473314e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.65175211867064e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.22976709367755e-12!GO:0048523;negative regulation of cellular process;2.41280735300823e-12!GO:0005793;ER-Golgi intermediate compartment;2.58969744025079e-12!GO:0051082;unfolded protein binding;2.86916078266029e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.98097261507071e-12!GO:0045271;respiratory chain complex I;3.98097261507071e-12!GO:0005747;mitochondrial respiratory chain complex I;3.98097261507071e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.85486036783334e-12!GO:0042773;ATP synthesis coupled electron transport;4.85486036783334e-12!GO:0017111;nucleoside-triphosphatase activity;6.5169881381811e-12!GO:0009055;electron carrier activity;7.00956057584037e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.19284203170861e-11!GO:0006732;coenzyme metabolic process;2.38200197103331e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.84707850128752e-11!GO:0048519;negative regulation of biological process;6.87510459509388e-11!GO:0005789;endoplasmic reticulum membrane;1.34015908765052e-10!GO:0000166;nucleotide binding;1.9571577626535e-10!GO:0003743;translation initiation factor activity;2.57731626726271e-10!GO:0042981;regulation of apoptosis;2.83393420444758e-10!GO:0006413;translational initiation;3.28729198269532e-10!GO:0043067;regulation of programmed cell death;4.28724647478203e-10!GO:0003712;transcription cofactor activity;6.10265461754615e-10!GO:0003676;nucleic acid binding;6.19702644506706e-10!GO:0006259;DNA metabolic process;1.05684572103405e-09!GO:0043412;biopolymer modification;1.46036065258617e-09!GO:0009056;catabolic process;1.67650815919622e-09!GO:0008361;regulation of cell size;1.78952176830847e-09!GO:0016049;cell growth;1.83136772659785e-09!GO:0005768;endosome;2.05562866118789e-09!GO:0006446;regulation of translational initiation;2.40134341109448e-09!GO:0005788;endoplasmic reticulum lumen;2.99023558439323e-09!GO:0005773;vacuole;3.06138449261037e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.39684220573898e-09!GO:0000375;RNA splicing, via transesterification reactions;3.39684220573898e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.39684220573898e-09!GO:0016070;RNA metabolic process;4.13511012298656e-09!GO:0016491;oxidoreductase activity;4.9879150552783e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.9879150552783e-09!GO:0001558;regulation of cell growth;5.41344765492945e-09!GO:0006366;transcription from RNA polymerase II promoter;5.48125773480969e-09!GO:0006464;protein modification process;9.07546375424318e-09!GO:0008639;small protein conjugating enzyme activity;2.20506871662321e-08!GO:0009150;purine ribonucleotide metabolic process;2.91090996630594e-08!GO:0006163;purine nucleotide metabolic process;3.10961971354546e-08!GO:0016604;nuclear body;3.12900910301203e-08!GO:0000323;lytic vacuole;3.16517839413465e-08!GO:0005764;lysosome;3.16517839413465e-08!GO:0043069;negative regulation of programmed cell death;3.94111505272089e-08!GO:0004842;ubiquitin-protein ligase activity;4.16381158852228e-08!GO:0009259;ribonucleotide metabolic process;4.31433308250378e-08!GO:0043066;negative regulation of apoptosis;4.54496097306025e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.55853975544346e-08!GO:0042254;ribosome biogenesis and assembly;4.9422327216909e-08!GO:0009060;aerobic respiration;5.37367941008735e-08!GO:0017038;protein import;5.81184274497864e-08!GO:0003924;GTPase activity;7.52724214204833e-08!GO:0019787;small conjugating protein ligase activity;7.55479111553922e-08!GO:0006461;protein complex assembly;8.38318912961587e-08!GO:0050794;regulation of cellular process;8.56965202441346e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.06465004378474e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.13973133092724e-07!GO:0044431;Golgi apparatus part;1.14174614071254e-07!GO:0051246;regulation of protein metabolic process;1.17090364951029e-07!GO:0006164;purine nucleotide biosynthetic process;1.25387249765247e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.35202597678808e-07!GO:0006913;nucleocytoplasmic transport;1.38016566471363e-07!GO:0015986;ATP synthesis coupled proton transport;1.42371523786355e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.42371523786355e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.54869188339168e-07!GO:0006916;anti-apoptosis;1.77339028139426e-07!GO:0045333;cellular respiration;2.09032017080356e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.18300122131689e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.2777468868139e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.2777468868139e-07!GO:0051169;nuclear transport;2.44534705503195e-07!GO:0030120;vesicle coat;2.51852622262791e-07!GO:0030662;coated vesicle membrane;2.51852622262791e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.60281070068239e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.81764873615579e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.01855605699176e-07!GO:0009141;nucleoside triphosphate metabolic process;3.28834002717746e-07!GO:0009260;ribonucleotide biosynthetic process;3.30841561190749e-07!GO:0043687;post-translational protein modification;4.777958763044e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.87672293546721e-07!GO:0008565;protein transporter activity;5.20652467122147e-07!GO:0017076;purine nucleotide binding;5.29813627953818e-07!GO:0051188;cofactor biosynthetic process;5.4013078063652e-07!GO:0044440;endosomal part;5.4013078063652e-07!GO:0010008;endosome membrane;5.4013078063652e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.6359394793207e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.6359394793207e-07!GO:0019829;cation-transporting ATPase activity;6.3878023529042e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.69335994805324e-07!GO:0004298;threonine endopeptidase activity;6.82464495379435e-07!GO:0009142;nucleoside triphosphate biosynthetic process;7.19352306272772e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.19352306272772e-07!GO:0007049;cell cycle;7.73662561037141e-07!GO:0048475;coated membrane;8.36325705825173e-07!GO:0030117;membrane coat;8.36325705825173e-07!GO:0016881;acid-amino acid ligase activity;8.62112203523947e-07!GO:0051789;response to protein stimulus;1.0002377969607e-06!GO:0006986;response to unfolded protein;1.0002377969607e-06!GO:0032553;ribonucleotide binding;1.08685282667002e-06!GO:0032555;purine ribonucleotide binding;1.08685282667002e-06!GO:0005635;nuclear envelope;1.16408202725881e-06!GO:0046034;ATP metabolic process;1.20004429089909e-06!GO:0006099;tricarboxylic acid cycle;1.28826208217014e-06!GO:0046356;acetyl-CoA catabolic process;1.28826208217014e-06!GO:0051187;cofactor catabolic process;1.48849302289971e-06!GO:0016607;nuclear speck;1.74008030325744e-06!GO:0048522;positive regulation of cellular process;1.9535571336678e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.97435100636941e-06!GO:0040008;regulation of growth;2.31628497367355e-06!GO:0016564;transcription repressor activity;2.47828066664046e-06!GO:0006754;ATP biosynthetic process;2.57081060348327e-06!GO:0006753;nucleoside phosphate metabolic process;2.57081060348327e-06!GO:0031988;membrane-bound vesicle;3.06011435228405e-06!GO:0031965;nuclear membrane;3.07019133189875e-06!GO:0031324;negative regulation of cellular metabolic process;3.25911984218789e-06!GO:0009109;coenzyme catabolic process;3.66494443323428e-06!GO:0003714;transcription corepressor activity;3.692916972182e-06!GO:0030532;small nuclear ribonucleoprotein complex;4.00636076603201e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.06004373370273e-06!GO:0006084;acetyl-CoA metabolic process;5.2015639244486e-06!GO:0005770;late endosome;5.79153686861921e-06!GO:0006399;tRNA metabolic process;7.30471385325555e-06!GO:0031982;vesicle;7.77795885022494e-06!GO:0050789;regulation of biological process;7.8650450410959e-06!GO:0007243;protein kinase cascade;8.050168766685e-06!GO:0045259;proton-transporting ATP synthase complex;8.14276164319233e-06!GO:0030036;actin cytoskeleton organization and biogenesis;8.84525819223279e-06!GO:0005525;GTP binding;9.45337314489503e-06!GO:0031252;leading edge;1.0088733644403e-05!GO:0000139;Golgi membrane;1.07572195330095e-05!GO:0051726;regulation of cell cycle;1.13959655211477e-05!GO:0007005;mitochondrion organization and biogenesis;1.16750404234075e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.32977873943483e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.32977873943483e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.32977873943483e-05!GO:0031410;cytoplasmic vesicle;1.37764693206236e-05!GO:0000074;regulation of progression through cell cycle;1.56667247871296e-05!GO:0009108;coenzyme biosynthetic process;1.60737021242087e-05!GO:0043038;amino acid activation;2.00421611016559e-05!GO:0006418;tRNA aminoacylation for protein translation;2.00421611016559e-05!GO:0043039;tRNA aminoacylation;2.00421611016559e-05!GO:0006974;response to DNA damage stimulus;2.04546718121348e-05!GO:0006091;generation of precursor metabolites and energy;2.13496180766323e-05!GO:0008654;phospholipid biosynthetic process;2.29312415601589e-05!GO:0005791;rough endoplasmic reticulum;2.29312415601589e-05!GO:0044262;cellular carbohydrate metabolic process;2.55899728144524e-05!GO:0009892;negative regulation of metabolic process;2.56608034606647e-05!GO:0005762;mitochondrial large ribosomal subunit;2.66897835716519e-05!GO:0000315;organellar large ribosomal subunit;2.66897835716519e-05!GO:0045454;cell redox homeostasis;2.71445249703387e-05!GO:0065002;intracellular protein transport across a membrane;2.71445249703387e-05!GO:0045786;negative regulation of progression through cell cycle;2.80190287731993e-05!GO:0051170;nuclear import;2.84801098885732e-05!GO:0005769;early endosome;2.87542490150198e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.89770214395552e-05!GO:0005798;Golgi-associated vesicle;2.89937604426897e-05!GO:0044453;nuclear membrane part;2.95762970346257e-05!GO:0006606;protein import into nucleus;3.14905342420251e-05!GO:0009117;nucleotide metabolic process;3.15940787023121e-05!GO:0016853;isomerase activity;3.4302474732975e-05!GO:0006364;rRNA processing;3.93172452397465e-05!GO:0016787;hydrolase activity;4.08867002656194e-05!GO:0000151;ubiquitin ligase complex;4.11434525709237e-05!GO:0003697;single-stranded DNA binding;4.58304617052119e-05!GO:0048518;positive regulation of biological process;4.62786158507373e-05!GO:0006613;cotranslational protein targeting to membrane;4.66856209553394e-05!GO:0042623;ATPase activity, coupled;4.95951655623116e-05!GO:0019843;rRNA binding;5.10541306954253e-05!GO:0005905;coated pit;5.20981259700314e-05!GO:0016072;rRNA metabolic process;5.47380233392448e-05!GO:0043566;structure-specific DNA binding;6.06536616269459e-05!GO:0000245;spliceosome assembly;6.18265714446819e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.23837419267834e-05!GO:0016887;ATPase activity;8.28789280033141e-05!GO:0048468;cell development;8.95304581306285e-05!GO:0022402;cell cycle process;9.04557272731558e-05!GO:0005667;transcription factor complex;9.32268007605471e-05!GO:0032446;protein modification by small protein conjugation;9.77596735509695e-05!GO:0003713;transcription coactivator activity;0.000103780083027113!GO:0016567;protein ubiquitination;0.000105235540412951!GO:0030029;actin filament-based process;0.000115511775003107!GO:0032561;guanyl ribonucleotide binding;0.000121801050800624!GO:0019001;guanyl nucleotide binding;0.000121801050800624!GO:0016044;membrane organization and biogenesis;0.000122563369124124!GO:0016481;negative regulation of transcription;0.000124210323716334!GO:0006752;group transfer coenzyme metabolic process;0.000130863454179705!GO:0016859;cis-trans isomerase activity;0.000133612286072701!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000138084472468754!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000144118065398088!GO:0030133;transport vesicle;0.000144399287037857!GO:0033116;ER-Golgi intermediate compartment membrane;0.000157136127994234!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00016036519551253!GO:0006950;response to stress;0.000166164488346063!GO:0065004;protein-DNA complex assembly;0.000169033486776698!GO:0030867;rough endoplasmic reticulum membrane;0.000183011714383681!GO:0031968;organelle outer membrane;0.000192278010406407!GO:0009719;response to endogenous stimulus;0.000208705837125435!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000208705837125435!GO:0019867;outer membrane;0.000209382221863436!GO:0007264;small GTPase mediated signal transduction;0.000209382221863436!GO:0016563;transcription activator activity;0.000210575453336072!GO:0008026;ATP-dependent helicase activity;0.000215939402710185!GO:0030554;adenyl nucleotide binding;0.000232179355647957!GO:0006793;phosphorus metabolic process;0.000280776298617215!GO:0006796;phosphate metabolic process;0.000280776298617215!GO:0005741;mitochondrial outer membrane;0.000283911665458293!GO:0000314;organellar small ribosomal subunit;0.000301029294154713!GO:0005763;mitochondrial small ribosomal subunit;0.000301029294154713!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000351242760838934!GO:0005524;ATP binding;0.000367208427150717!GO:0006323;DNA packaging;0.000381464488251912!GO:0032559;adenyl ribonucleotide binding;0.000383695253956276!GO:0005643;nuclear pore;0.000419538110192783!GO:0030041;actin filament polymerization;0.000442846386261661!GO:0005048;signal sequence binding;0.0004458483201771!GO:0043065;positive regulation of apoptosis;0.000471982745225641!GO:0005520;insulin-like growth factor binding;0.000527932339622405!GO:0043021;ribonucleoprotein binding;0.000556282960138169!GO:0043068;positive regulation of programmed cell death;0.000645444747720874!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000645444747720874!GO:0006979;response to oxidative stress;0.000678437030612221!GO:0046474;glycerophospholipid biosynthetic process;0.000678517311485637!GO:0005885;Arp2/3 protein complex;0.000779463866123191!GO:0019899;enzyme binding;0.00084905019917585!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000923039430854189!GO:0006612;protein targeting to membrane;0.00092745124136732!GO:0043623;cellular protein complex assembly;0.000983761898276545!GO:0043681;protein import into mitochondrion;0.00101613631916462!GO:0016310;phosphorylation;0.00103871663578051!GO:0006281;DNA repair;0.00103871663578051!GO:0051920;peroxiredoxin activity;0.00108102496597308!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00109210077678443!GO:0004386;helicase activity;0.00109210077678443!GO:0008154;actin polymerization and/or depolymerization;0.00109495074253883!GO:0030132;clathrin coat of coated pit;0.0013460083734555!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00137680445024367!GO:0006333;chromatin assembly or disassembly;0.00142156086850409!GO:0004576;oligosaccharyl transferase activity;0.00153768357549089!GO:0045892;negative regulation of transcription, DNA-dependent;0.00164449151904648!GO:0043284;biopolymer biosynthetic process;0.00185342559726321!GO:0065007;biological regulation;0.00189467947268215!GO:0006509;membrane protein ectodomain proteolysis;0.00189951203518507!GO:0033619;membrane protein proteolysis;0.00189951203518507!GO:0008250;oligosaccharyl transferase complex;0.00193137633333802!GO:0016740;transferase activity;0.00197773901067705!GO:0030663;COPI coated vesicle membrane;0.00201652301668095!GO:0030126;COPI vesicle coat;0.00201652301668095!GO:0046930;pore complex;0.0021001528039226!GO:0065009;regulation of a molecular function;0.00215023221109535!GO:0009967;positive regulation of signal transduction;0.0022098934379898!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00228881319250906!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00228881319250906!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00228881319250906!GO:0051276;chromosome organization and biogenesis;0.00237854960393842!GO:0051427;hormone receptor binding;0.00248584926707269!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00250011110506074!GO:0003724;RNA helicase activity;0.00256130464739485!GO:0043488;regulation of mRNA stability;0.00257028778904787!GO:0043487;regulation of RNA stability;0.00257028778904787!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00267534784658539!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00275122499662647!GO:0046489;phosphoinositide biosynthetic process;0.00282553459770741!GO:0000278;mitotic cell cycle;0.00299008385336216!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00301799932137566!GO:0006917;induction of apoptosis;0.00301865858831763!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00303389802267555!GO:0001726;ruffle;0.00308588340893977!GO:0043433;negative regulation of transcription factor activity;0.0031040506260025!GO:0050657;nucleic acid transport;0.00318771495852978!GO:0051236;establishment of RNA localization;0.00318771495852978!GO:0050658;RNA transport;0.00318771495852978!GO:0051252;regulation of RNA metabolic process;0.00331389987003208!GO:0006403;RNA localization;0.00342391417551094!GO:0051287;NAD binding;0.00353180017586668!GO:0006354;RNA elongation;0.00354829651166217!GO:0007040;lysosome organization and biogenesis;0.00371007833713464!GO:0031543;peptidyl-proline dioxygenase activity;0.00371007833713464!GO:0030118;clathrin coat;0.00379966444896197!GO:0006414;translational elongation;0.00383684517342601!GO:0046467;membrane lipid biosynthetic process;0.00391708527844076!GO:0018196;peptidyl-asparagine modification;0.00400481139012769!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00400481139012769!GO:0016779;nucleotidyltransferase activity;0.00408803722300135!GO:0003729;mRNA binding;0.00420926708730476!GO:0012502;induction of programmed cell death;0.00422175102208785!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00425195684038088!GO:0000785;chromatin;0.00433256411182727!GO:0035257;nuclear hormone receptor binding;0.00436552350658007!GO:0004177;aminopeptidase activity;0.00463828459243612!GO:0007033;vacuole organization and biogenesis;0.00465784454606827!GO:0008283;cell proliferation;0.00475026198879243!GO:0016197;endosome transport;0.0048563035639995!GO:0005774;vacuolar membrane;0.00492168308493332!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00504848585378471!GO:0008632;apoptotic program;0.00508148856338213!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0051861292110068!GO:0022890;inorganic cation transmembrane transporter activity;0.00537303264568882!GO:0006334;nucleosome assembly;0.00541062266749437!GO:0030137;COPI-coated vesicle;0.00541166077093159!GO:0050662;coenzyme binding;0.00541166077093159!GO:0030027;lamellipodium;0.00544934751537709!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00570725468894188!GO:0030658;transport vesicle membrane;0.00580913543912391!GO:0007050;cell cycle arrest;0.0058786315036186!GO:0051235;maintenance of localization;0.00588370576019238!GO:0019752;carboxylic acid metabolic process;0.00589163622788636!GO:0006740;NADPH regeneration;0.00596384008176315!GO:0006098;pentose-phosphate shunt;0.00596384008176315!GO:0006082;organic acid metabolic process;0.00612393767493443!GO:0006626;protein targeting to mitochondrion;0.00632348223711187!GO:0006650;glycerophospholipid metabolic process;0.00632348223711187!GO:0019798;procollagen-proline dioxygenase activity;0.00634429183040574!GO:0003746;translation elongation factor activity;0.00641723589469931!GO:0016568;chromatin modification;0.00643883266848807!GO:0006693;prostaglandin metabolic process;0.00671373315643071!GO:0006692;prostanoid metabolic process;0.00671373315643071!GO:0048500;signal recognition particle;0.00671766505546508!GO:0051087;chaperone binding;0.00682461915898169!GO:0048487;beta-tubulin binding;0.00730155528417521!GO:0030145;manganese ion binding;0.00732092896432212!GO:0031902;late endosome membrane;0.00772293963581286!GO:0031901;early endosome membrane;0.00788451634594256!GO:0005869;dynactin complex;0.00805717223296286!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00821756324265974!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00821756324265974!GO:0048471;perinuclear region of cytoplasm;0.00827265955185656!GO:0031497;chromatin assembly;0.00849854386931328!GO:0006897;endocytosis;0.00849854386931328!GO:0010324;membrane invagination;0.00849854386931328!GO:0006402;mRNA catabolic process;0.00860244117265374!GO:0045792;negative regulation of cell size;0.00863397417479658!GO:0031418;L-ascorbic acid binding;0.00888248990334251!GO:0006260;DNA replication;0.00897421204936911!GO:0008092;cytoskeletal protein binding;0.00906463332256936!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00907648502980251!GO:0015002;heme-copper terminal oxidase activity;0.00907648502980251!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00907648502980251!GO:0004129;cytochrome-c oxidase activity;0.00907648502980251!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00910986239841868!GO:0015399;primary active transmembrane transporter activity;0.00910986239841868!GO:0030308;negative regulation of cell growth;0.0091765220387923!GO:0006891;intra-Golgi vesicle-mediated transport;0.00947363932842604!GO:0008180;signalosome;0.0095367713661644!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00977139729519835!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00996500943443782!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.010005113295805!GO:0007006;mitochondrial membrane organization and biogenesis;0.010005113295805!GO:0005813;centrosome;0.0100272736501461!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.010039109763464!GO:0005765;lysosomal membrane;0.0100457254493767!GO:0003756;protein disulfide isomerase activity;0.0106687016411971!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0106687016411971!GO:0016860;intramolecular oxidoreductase activity;0.0107801876309508!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0109947657809914!GO:0051325;interphase;0.0113691331136165!GO:0009165;nucleotide biosynthetic process;0.0113861477930837!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0114021965326481!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0114021965326481!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.01140601060502!GO:0045047;protein targeting to ER;0.01140601060502!GO:0003711;transcription elongation regulator activity;0.0114405611243238!GO:0030833;regulation of actin filament polymerization;0.0118953704169463!GO:0003899;DNA-directed RNA polymerase activity;0.0121286316513884!GO:0030125;clathrin vesicle coat;0.0127079076968533!GO:0030665;clathrin coated vesicle membrane;0.0127079076968533!GO:0006643;membrane lipid metabolic process;0.0128567803948307!GO:0008139;nuclear localization sequence binding;0.0128840142853777!GO:0051329;interphase of mitotic cell cycle;0.0130692928736762!GO:0030176;integral to endoplasmic reticulum membrane;0.0131262204767871!GO:0051101;regulation of DNA binding;0.0131458558985371!GO:0051128;regulation of cellular component organization and biogenesis;0.0132111912725586!GO:0051059;NF-kappaB binding;0.0132239040330471!GO:0045045;secretory pathway;0.0134686189096307!GO:0050811;GABA receptor binding;0.0135606015257141!GO:0006401;RNA catabolic process;0.0136800209266018!GO:0051540;metal cluster binding;0.0136947719489985!GO:0051536;iron-sulfur cluster binding;0.0136947719489985!GO:0044437;vacuolar part;0.0137233894834952!GO:0006839;mitochondrial transport;0.0145631398199299!GO:0008610;lipid biosynthetic process;0.0145631398199299!GO:0006892;post-Golgi vesicle-mediated transport;0.0149463780361743!GO:0005975;carbohydrate metabolic process;0.0151381735109329!GO:0019222;regulation of metabolic process;0.0152797992486115!GO:0006383;transcription from RNA polymerase III promoter;0.0153263275957148!GO:0008383;manganese superoxide dismutase activity;0.0153498957976214!GO:0001315;age-dependent response to reactive oxygen species;0.0153498957976214!GO:0003690;double-stranded DNA binding;0.0158240192783126!GO:0006417;regulation of translation;0.0159461973754885!GO:0000902;cell morphogenesis;0.0160293652540136!GO:0032989;cellular structure morphogenesis;0.0160293652540136!GO:0006118;electron transport;0.0161461226650364!GO:0030660;Golgi-associated vesicle membrane;0.0161461226650364!GO:0030119;AP-type membrane coat adaptor complex;0.0161461226650364!GO:0043022;ribosome binding;0.0161706092905561!GO:0017166;vinculin binding;0.0161931708712434!GO:0045941;positive regulation of transcription;0.0162592086073888!GO:0033673;negative regulation of kinase activity;0.0162592086073888!GO:0006469;negative regulation of protein kinase activity;0.0162592086073888!GO:0031072;heat shock protein binding;0.0163425020652018!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0165517208756562!GO:0030384;phosphoinositide metabolic process;0.0165712776920748!GO:0006506;GPI anchor biosynthetic process;0.0165712776920748!GO:0006497;protein amino acid lipidation;0.0167643232756589!GO:0007265;Ras protein signal transduction;0.016941027066515!GO:0008312;7S RNA binding;0.0170128357981182!GO:0045893;positive regulation of transcription, DNA-dependent;0.0170524206702023!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0171343520361099!GO:0005815;microtubule organizing center;0.0173419515898604!GO:0001872;zymosan binding;0.0174988812092884!GO:0001878;response to yeast;0.0174988812092884!GO:0005694;chromosome;0.0175902201570054!GO:0001516;prostaglandin biosynthetic process;0.0178396247603324!GO:0046457;prostanoid biosynthetic process;0.0178396247603324!GO:0008186;RNA-dependent ATPase activity;0.0178602666901555!GO:0007010;cytoskeleton organization and biogenesis;0.0178602666901555!GO:0006818;hydrogen transport;0.0181623853515348!GO:0015992;proton transport;0.0182267115475465!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0182996189237598!GO:0009615;response to virus;0.0185103687284576!GO:0001527;microfibril;0.0185248739311383!GO:0051098;regulation of binding;0.0186073758879809!GO:0046483;heterocycle metabolic process;0.0186073758879809!GO:0030134;ER to Golgi transport vesicle;0.0188090781217179!GO:0035035;histone acetyltransferase binding;0.0189749685243494!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0190475095246475!GO:0033043;regulation of organelle organization and biogenesis;0.0190475095246475!GO:0051028;mRNA transport;0.0191567271171683!GO:0045185;maintenance of protein localization;0.0194953766506146!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0195603521299988!GO:0008637;apoptotic mitochondrial changes;0.0196789429520417!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0215249896387161!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0220620157959369!GO:0051348;negative regulation of transferase activity;0.0225357624561714!GO:0000049;tRNA binding;0.0225357624561714!GO:0006778;porphyrin metabolic process;0.0226032904720808!GO:0033013;tetrapyrrole metabolic process;0.0226032904720808!GO:0000096;sulfur amino acid metabolic process;0.02289410069836!GO:0016363;nuclear matrix;0.02289410069836!GO:0031272;regulation of pseudopodium formation;0.02289410069836!GO:0031269;pseudopodium formation;0.02289410069836!GO:0031344;regulation of cell projection organization and biogenesis;0.02289410069836!GO:0031268;pseudopodium organization and biogenesis;0.02289410069836!GO:0031346;positive regulation of cell projection organization and biogenesis;0.02289410069836!GO:0031274;positive regulation of pseudopodium formation;0.02289410069836!GO:0051270;regulation of cell motility;0.0230230332424373!GO:0042802;identical protein binding;0.0233630244265798!GO:0006505;GPI anchor metabolic process;0.0234848766228162!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0234848766228162!GO:0032940;secretion by cell;0.0234848766228162!GO:0019838;growth factor binding;0.0235168560211094!GO:0030127;COPII vesicle coat;0.0235168560211094!GO:0012507;ER to Golgi transport vesicle membrane;0.0235168560211094!GO:0006595;polyamine metabolic process;0.0235497398352597!GO:0006790;sulfur metabolic process;0.0235497398352597!GO:0030659;cytoplasmic vesicle membrane;0.0236050551520966!GO:0032507;maintenance of cellular protein localization;0.0238956538032791!GO:0007242;intracellular signaling cascade;0.0242566169924757!GO:0006749;glutathione metabolic process;0.0248123720505487!GO:0031529;ruffle organization and biogenesis;0.0248242461627546!GO:0007034;vacuolar transport;0.026673852268948!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0268856856235176!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0274291840000534!GO:0004784;superoxide dismutase activity;0.0274291840000534!GO:0005862;muscle thin filament tropomyosin;0.0276300022342123!GO:0030131;clathrin adaptor complex;0.0278623901996106!GO:0006644;phospholipid metabolic process;0.0279828934964908!GO:0006739;NADP metabolic process;0.0282386228745908!GO:0005684;U2-dependent spliceosome;0.0282795783780102!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0287598706095518!GO:0051090;regulation of transcription factor activity;0.0290470558173256!GO:0016408;C-acyltransferase activity;0.0292677415343157!GO:0030503;regulation of cell redox homeostasis;0.0295058362604911!GO:0009116;nucleoside metabolic process;0.0295518748352049!GO:0045926;negative regulation of growth;0.0295518748352049!GO:0030032;lamellipodium biogenesis;0.0295518748352049!GO:0042158;lipoprotein biosynthetic process;0.0296325381644131!GO:0045334;clathrin-coated endocytic vesicle;0.0298649386416014!GO:0031589;cell-substrate adhesion;0.0299470240609897!GO:0005100;Rho GTPase activator activity;0.0303186760387367!GO:0000082;G1/S transition of mitotic cell cycle;0.03139102788963!GO:0008484;sulfuric ester hydrolase activity;0.0320499700402381!GO:0042168;heme metabolic process;0.0332142134006104!GO:0044427;chromosomal part;0.0332178439109993!GO:0006635;fatty acid beta-oxidation;0.0332894843620695!GO:0046519;sphingoid metabolic process;0.0334566692596259!GO:0006289;nucleotide-excision repair;0.0335816519138153!GO:0051539;4 iron, 4 sulfur cluster binding;0.0341398638540781!GO:0030880;RNA polymerase complex;0.0350174299793619!GO:0031625;ubiquitin protein ligase binding;0.0351319969493969!GO:0005583;fibrillar collagen;0.0358260140875885!GO:0006213;pyrimidine nucleoside metabolic process;0.0359094889946974!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0359624922177259!GO:0007021;tubulin folding;0.0365378212783838!GO:0008047;enzyme activator activity;0.0373409157422278!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0378423898039411!GO:0004004;ATP-dependent RNA helicase activity;0.0381647289255986!GO:0007041;lysosomal transport;0.0382710168886761!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0388152092143882!GO:0044420;extracellular matrix part;0.039759293786602!GO:0009112;nucleobase metabolic process;0.039759293786602!GO:0043492;ATPase activity, coupled to movement of substances;0.0398630894335176!GO:0005832;chaperonin-containing T-complex;0.0398630894335176!GO:0007160;cell-matrix adhesion;0.0403465041999985!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0420650077168576!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0420650077168576!GO:0046813;virion attachment, binding of host cell surface receptor;0.0420650077168576!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0420650077168576!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.042157150576936!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.042396080693155!GO:0009966;regulation of signal transduction;0.042396080693155!GO:0030518;steroid hormone receptor signaling pathway;0.042396080693155!GO:0030128;clathrin coat of endocytic vesicle;0.042396080693155!GO:0030669;clathrin-coated endocytic vesicle membrane;0.042396080693155!GO:0030122;AP-2 adaptor complex;0.042396080693155!GO:0006984;ER-nuclear signaling pathway;0.0430699980734218!GO:0006352;transcription initiation;0.043362102912147!GO:0051651;maintenance of cellular localization;0.0440609380777292!GO:0016272;prefoldin complex;0.0443775882585197!GO:0015630;microtubule cytoskeleton;0.0444434308624755!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0455174363860788!GO:0030031;cell projection biogenesis;0.0455362688819041!GO:0005801;cis-Golgi network;0.0455362688819041!GO:0015036;disulfide oxidoreductase activity;0.045756061827963!GO:0009119;ribonucleoside metabolic process;0.045756061827963!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.045756061827963!GO:0016584;nucleosome positioning;0.0458607587758611!GO:0004722;protein serine/threonine phosphatase activity;0.046432406881918!GO:0032535;regulation of cellular component size;0.0464976677920946!GO:0012506;vesicle membrane;0.0469279957251575!GO:0030832;regulation of actin filament length;0.0481993298923784!GO:0004228;gelatinase A activity;0.0482980435126737!GO:0001955;blood vessel maturation;0.0482980435126737!GO:0051168;nuclear export;0.0482980435126737!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0482980435126737!GO:0010257;NADH dehydrogenase complex assembly;0.0482980435126737!GO:0033108;mitochondrial respiratory chain complex assembly;0.0482980435126737!GO:0008022;protein C-terminus binding;0.04861885766523!GO:0044433;cytoplasmic vesicle part;0.0492309576779817!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0492908953753641!GO:0001666;response to hypoxia;0.0493311127947951!GO:0030199;collagen fibril organization;0.0495183597703066 | |||
|sample_id=11368 | |sample_id=11368 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=synovium | |sample_tissue=synovium | ||
|top_motifs=ESR1:2.25820900196;ALX4:2.12335028849;HES1:2.11443110855;UFEwm:1.85992408126;PAX1,9:1.760527234;TFAP4:1.74412095869;FOXL1:1.70654533408;EVI1:1.66743143849;TAL1_TCF{3,4,12}:1.60738324278;EN1,2:1.57645713674;HMX1:1.51806010073;GLI1..3:1.46612769109;ATF6:1.42821688086;ZNF238:1.4229243416;RXR{A,B,G}:1.37420544136;MTF1:1.28946384558;TBP:1.27027709282;HOX{A4,D4}:1.25626202499;GCM1,2:1.20246435066;TFCP2:1.13424951499;MYBL2:1.11914535647;HSF1,2:1.09706264226;KLF4:1.0392143761;STAT2,4,6:1.03467531991;RREB1:0.985078880194;TLX1..3_NFIC{dimer}:0.972640764184;XBP1:0.966447279316;FOXO1,3,4:0.956258139543;IKZF1:0.956110717995;HOX{A6,A7,B6,B7}:0.945276036953;GFI1B:0.924028704821;TEAD1:0.890141914415;NFATC1..3:0.888244875307;MAFB:0.887800078089;ZNF423:0.887360443798;PRDM1:0.884561585571;SMAD1..7,9:0.822624763072;HIF1A:0.774237589459;TFAP2B:0.765480998414;IRF1,2:0.751556632362;EBF1:0.749675590337;GZF1:0.740469669143;NR6A1:0.707904526318;TEF:0.697711330273;ZIC1..3:0.697196481248;TFAP2{A,C}:0.695677317511;GTF2I:0.682618347072;NANOG{mouse}:0.663091779663;SRF:0.643958059346;RXRA_VDR{dimer}:0.641626781684;POU6F1:0.633945144453;ESRRA:0.59882020264;HMGA1,2:0.589105022565;HOX{A5,B5}:0.583715491875;PAX4:0.560988088607;NKX3-1:0.552530820738;GTF2A1,2:0.518299250259;PAX5:0.492085286456;HAND1,2:0.487357705584;MTE{core}:0.474806754803;NR1H4:0.463621376231;HIC1:0.444343707485;ZBTB6:0.429899562652;XCPE1{core}:0.418998408066;MYFfamily:0.406475238354;VSX1,2:0.403991082877;NFE2L1:0.39283152207;PATZ1:0.378362718428;MAZ:0.364879173476;ZNF148:0.348235403134;TP53:0.341378769936;HLF:0.340987465092;ZNF384:0.338968294929;CDC5L:0.328886845302;NR3C1:0.300141707848;CDX1,2,4:0.299401866213;GATA4:0.295796362004;POU5F1:0.293207285293;NKX2-2,8:0.283996452953;TOPORS:0.241709276314;NKX2-1,4:0.224243812208;CEBPA,B_DDIT3:0.175193518491;TBX4,5:0.171731291945;SPZ1:0.131882222808;NFIL3:0.123075871537;EGR1..3:0.121901701637;LHX3,4:0.08888244817;FOXP3:0.0834436346629;AR:0.0808194175457;MZF1:0.0575933029302;TLX2:0.0487067189056;LMO2:0.0400899754624;bHLH_family:0.0400727466352;NFKB1_REL_RELA:0.0298489606442;REST:0.019736162959;PPARG:0.00892259608011;NHLH1,2:-0.0188620232141;MED-1{core}:-0.0207087122047;RUNX1..3:-0.0468374174134;AIRE:-0.0475530738626;MEF2{A,B,C,D}:-0.101759967517;BPTF:-0.103276716854;YY1:-0.131417298624;BACH2:-0.156566472993;NKX3-2:-0.169872653446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.173289544304;EP300:-0.177839105592;FOS_FOS{B,L1}_JUN{B,D}:-0.200309347025;FOXM1:-0.20512564488;IRF7:-0.213225509612;SP1:-0.231217474183;HNF4A_NR2F1,2:-0.231677841664;HBP1_HMGB_SSRP1_UBTF:-0.237455834675;NFE2L2:-0.241782525941;FOXQ1:-0.250428511158;HNF1A:-0.257476966326;FOSL2:-0.263565868025;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26548338016;ARID5B:-0.277879943706;RBPJ:-0.283466021371;ATF4:-0.291186786561;FOXD3:-0.297239157071;ATF5_CREB3:-0.298418686964;DMAP1_NCOR{1,2}_SMARC:-0.326409207947;SREBF1,2:-0.330666774395;RFX1:-0.344322189346;PDX1:-0.357759654379;AHR_ARNT_ARNT2:-0.366293629894;FOX{F1,F2,J1}:-0.376442456184;FOXP1:-0.424488330317;MYB:-0.443168223599;FOX{D1,D2}:-0.446677068925;IKZF2:-0.459239715918;FOX{I1,J2}:-0.476065838712;NFE2:-0.488701096684;SPI1:-0.494920351197;BREu{core}:-0.504734981915;NR5A1,2:-0.505710622242;SOX5:-0.514745350213;HOXA9_MEIS1:-0.54749269594;SOX17:-0.552788276673;ETS1,2:-0.584478808117;LEF1_TCF7_TCF7L1,2:-0.584961765704;SPIB:-0.603699528698;JUN:-0.603830081505;PRRX1,2:-0.607047486723;STAT5{A,B}:-0.61723438955;ATF2:-0.625545503161;CRX:-0.638480877545;ZBTB16:-0.647293564779;ZFP161:-0.647554997209;ONECUT1,2:-0.654072940221;CREB1:-0.657176130475;SNAI1..3:-0.6769601708;TFDP1:-0.699165511059;PAX3,7:-0.715190330372;ELK1,4_GABP{A,B1}:-0.783693764674;PITX1..3:-0.785188747054;POU3F1..4:-0.79876967463;STAT1,3:-0.800815179782;PAX6:-0.816203826705;DBP:-0.881651747329;NKX2-3_NKX2-5:-0.907825118686;T:-0.916357059395;ZEB1:-0.93245746419;ZNF143:-0.932627260324;POU1F1:-0.935495704913;PAX2:-0.936206328431;ADNP_IRX_SIX_ZHX:-0.946133521387;NRF1:-0.949200663637;E2F1..5:-0.953228707197;FOXN1:-0.954426982426;RFX2..5_RFXANK_RFXAP:-0.967607223254;GFI1:-0.985305381911;NKX6-1,2:-1.04089159633;NFIX:-1.07817320453;ELF1,2,4:-1.08855138203;RORA:-1.10452958428;TGIF1:-1.10720137466;MYOD1:-1.20015327893;FOXA2:-1.21510833749;CUX2:-1.22960394556;SOX2:-1.25226719824;POU2F1..3:-1.36352784362;PBX1:-1.39516844782;GATA6:-1.45890288173;PAX8:-1.46011807604;SOX{8,9,10}:-1.50496534442;NFY{A,B,C}:-1.6397273449;OCT4_SOX2{dimer}:-1.68682710152;ALX1:-1.7151800289;NANOG:-2.1840520029 | |top_motifs=ESR1:2.25820900196;ALX4:2.12335028849;HES1:2.11443110855;UFEwm:1.85992408126;PAX1,9:1.760527234;TFAP4:1.74412095869;FOXL1:1.70654533408;EVI1:1.66743143849;TAL1_TCF{3,4,12}:1.60738324278;EN1,2:1.57645713674;HMX1:1.51806010073;GLI1..3:1.46612769109;ATF6:1.42821688086;ZNF238:1.4229243416;RXR{A,B,G}:1.37420544136;MTF1:1.28946384558;TBP:1.27027709282;HOX{A4,D4}:1.25626202499;GCM1,2:1.20246435066;TFCP2:1.13424951499;MYBL2:1.11914535647;HSF1,2:1.09706264226;KLF4:1.0392143761;STAT2,4,6:1.03467531991;RREB1:0.985078880194;TLX1..3_NFIC{dimer}:0.972640764184;XBP1:0.966447279316;FOXO1,3,4:0.956258139543;IKZF1:0.956110717995;HOX{A6,A7,B6,B7}:0.945276036953;GFI1B:0.924028704821;TEAD1:0.890141914415;NFATC1..3:0.888244875307;MAFB:0.887800078089;ZNF423:0.887360443798;PRDM1:0.884561585571;SMAD1..7,9:0.822624763072;HIF1A:0.774237589459;TFAP2B:0.765480998414;IRF1,2:0.751556632362;EBF1:0.749675590337;GZF1:0.740469669143;NR6A1:0.707904526318;TEF:0.697711330273;ZIC1..3:0.697196481248;TFAP2{A,C}:0.695677317511;GTF2I:0.682618347072;NANOG{mouse}:0.663091779663;SRF:0.643958059346;RXRA_VDR{dimer}:0.641626781684;POU6F1:0.633945144453;ESRRA:0.59882020264;HMGA1,2:0.589105022565;HOX{A5,B5}:0.583715491875;PAX4:0.560988088607;NKX3-1:0.552530820738;GTF2A1,2:0.518299250259;PAX5:0.492085286456;HAND1,2:0.487357705584;MTE{core}:0.474806754803;NR1H4:0.463621376231;HIC1:0.444343707485;ZBTB6:0.429899562652;XCPE1{core}:0.418998408066;MYFfamily:0.406475238354;VSX1,2:0.403991082877;NFE2L1:0.39283152207;PATZ1:0.378362718428;MAZ:0.364879173476;ZNF148:0.348235403134;TP53:0.341378769936;HLF:0.340987465092;ZNF384:0.338968294929;CDC5L:0.328886845302;NR3C1:0.300141707848;CDX1,2,4:0.299401866213;GATA4:0.295796362004;POU5F1:0.293207285293;NKX2-2,8:0.283996452953;TOPORS:0.241709276314;NKX2-1,4:0.224243812208;CEBPA,B_DDIT3:0.175193518491;TBX4,5:0.171731291945;SPZ1:0.131882222808;NFIL3:0.123075871537;EGR1..3:0.121901701637;LHX3,4:0.08888244817;FOXP3:0.0834436346629;AR:0.0808194175457;MZF1:0.0575933029302;TLX2:0.0487067189056;LMO2:0.0400899754624;bHLH_family:0.0400727466352;NFKB1_REL_RELA:0.0298489606442;REST:0.019736162959;PPARG:0.00892259608011;NHLH1,2:-0.0188620232141;MED-1{core}:-0.0207087122047;RUNX1..3:-0.0468374174134;AIRE:-0.0475530738626;MEF2{A,B,C,D}:-0.101759967517;BPTF:-0.103276716854;YY1:-0.131417298624;BACH2:-0.156566472993;NKX3-2:-0.169872653446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.173289544304;EP300:-0.177839105592;FOS_FOS{B,L1}_JUN{B,D}:-0.200309347025;FOXM1:-0.20512564488;IRF7:-0.213225509612;SP1:-0.231217474183;HNF4A_NR2F1,2:-0.231677841664;HBP1_HMGB_SSRP1_UBTF:-0.237455834675;NFE2L2:-0.241782525941;FOXQ1:-0.250428511158;HNF1A:-0.257476966326;FOSL2:-0.263565868025;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26548338016;ARID5B:-0.277879943706;RBPJ:-0.283466021371;ATF4:-0.291186786561;FOXD3:-0.297239157071;ATF5_CREB3:-0.298418686964;DMAP1_NCOR{1,2}_SMARC:-0.326409207947;SREBF1,2:-0.330666774395;RFX1:-0.344322189346;PDX1:-0.357759654379;AHR_ARNT_ARNT2:-0.366293629894;FOX{F1,F2,J1}:-0.376442456184;FOXP1:-0.424488330317;MYB:-0.443168223599;FOX{D1,D2}:-0.446677068925;IKZF2:-0.459239715918;FOX{I1,J2}:-0.476065838712;NFE2:-0.488701096684;SPI1:-0.494920351197;BREu{core}:-0.504734981915;NR5A1,2:-0.505710622242;SOX5:-0.514745350213;HOXA9_MEIS1:-0.54749269594;SOX17:-0.552788276673;ETS1,2:-0.584478808117;LEF1_TCF7_TCF7L1,2:-0.584961765704;SPIB:-0.603699528698;JUN:-0.603830081505;PRRX1,2:-0.607047486723;STAT5{A,B}:-0.61723438955;ATF2:-0.625545503161;CRX:-0.638480877545;ZBTB16:-0.647293564779;ZFP161:-0.647554997209;ONECUT1,2:-0.654072940221;CREB1:-0.657176130475;SNAI1..3:-0.6769601708;TFDP1:-0.699165511059;PAX3,7:-0.715190330372;ELK1,4_GABP{A,B1}:-0.783693764674;PITX1..3:-0.785188747054;POU3F1..4:-0.79876967463;STAT1,3:-0.800815179782;PAX6:-0.816203826705;DBP:-0.881651747329;NKX2-3_NKX2-5:-0.907825118686;T:-0.916357059395;ZEB1:-0.93245746419;ZNF143:-0.932627260324;POU1F1:-0.935495704913;PAX2:-0.936206328431;ADNP_IRX_SIX_ZHX:-0.946133521387;NRF1:-0.949200663637;E2F1..5:-0.953228707197;FOXN1:-0.954426982426;RFX2..5_RFXANK_RFXAP:-0.967607223254;GFI1:-0.985305381911;NKX6-1,2:-1.04089159633;NFIX:-1.07817320453;ELF1,2,4:-1.08855138203;RORA:-1.10452958428;TGIF1:-1.10720137466;MYOD1:-1.20015327893;FOXA2:-1.21510833749;CUX2:-1.22960394556;SOX2:-1.25226719824;POU2F1..3:-1.36352784362;PBX1:-1.39516844782;GATA6:-1.45890288173;PAX8:-1.46011807604;SOX{8,9,10}:-1.50496534442;NFY{A,B,C}:-1.6397273449;OCT4_SOX2{dimer}:-1.68682710152;ALX1:-1.7151800289;NANOG:-2.1840520029 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11368-117I9;search_select_hide=table117:FF:11368-117I9 | |||
}} | }} | ||
Latest revision as of 17:55, 4 June 2020
| Name: | Synoviocyte, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11992 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11992
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11992
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.966 |
| 10 | 10 | 0.475 |
| 100 | 100 | 0.937 |
| 101 | 101 | 0.331 |
| 102 | 102 | 0.142 |
| 103 | 103 | 0.401 |
| 104 | 104 | 0.76 |
| 105 | 105 | 0.0921 |
| 106 | 106 | 0.0856 |
| 107 | 107 | 0.03 |
| 108 | 108 | 0.104 |
| 109 | 109 | 0.553 |
| 11 | 11 | 0.406 |
| 110 | 110 | 0.959 |
| 111 | 111 | 0.956 |
| 112 | 112 | 0.534 |
| 113 | 113 | 0.0639 |
| 114 | 114 | 0.113 |
| 115 | 115 | 0.00638 |
| 116 | 116 | 0.00435 |
| 117 | 117 | 0.424 |
| 118 | 118 | 0.817 |
| 119 | 119 | 0.955 |
| 12 | 12 | 0.557 |
| 120 | 120 | 0.531 |
| 121 | 121 | 0.168 |
| 122 | 122 | 0.0618 |
| 123 | 123 | 0.0517 |
| 124 | 124 | 0.146 |
| 125 | 125 | 0.514 |
| 126 | 126 | 0.425 |
| 127 | 127 | 0.563 |
| 128 | 128 | 0.0386 |
| 129 | 129 | 0.752 |
| 13 | 13 | 0.679 |
| 130 | 130 | 0.143 |
| 131 | 131 | 0.356 |
| 132 | 132 | 0.0786 |
| 133 | 133 | 0.16 |
| 134 | 134 | 0.543 |
| 135 | 135 | 0.435 |
| 136 | 136 | 0.755 |
| 137 | 137 | 0.602 |
| 138 | 138 | 0.548 |
| 139 | 139 | 0.265 |
| 14 | 14 | 0.75 |
| 140 | 140 | 0.375 |
| 141 | 141 | 0.731 |
| 142 | 142 | 0.326 |
| 143 | 143 | 0.576 |
| 144 | 144 | 0.185 |
| 145 | 145 | 0.606 |
| 146 | 146 | 0.167 |
| 147 | 147 | 0.393 |
| 148 | 148 | 0.863 |
| 149 | 149 | 0.0013 |
| 15 | 15 | 0.964 |
| 150 | 150 | 0.305 |
| 151 | 151 | 0.316 |
| 152 | 152 | 0.0245 |
| 153 | 153 | 0.208 |
| 154 | 154 | 0.834 |
| 155 | 155 | 0.935 |
| 156 | 156 | 0.765 |
| 157 | 157 | 0.871 |
| 158 | 158 | 0.00816 |
| 159 | 159 | 0.597 |
| 16 | 16 | 0.025 |
| 160 | 160 | 0.603 |
| 161 | 161 | 0.94 |
| 162 | 162 | 0.684 |
| 163 | 163 | 0.942 |
| 164 | 164 | 0.0565 |
| 165 | 165 | 0.406 |
| 166 | 166 | 0.0101 |
| 167 | 167 | 0.875 |
| 168 | 168 | 0.658 |
| 169 | 169 | 0.012 |
| 17 | 17 | 0.312 |
| 18 | 18 | 0.414 |
| 19 | 19 | 0.00327 |
| 2 | 2 | 0.152 |
| 20 | 20 | 0.465 |
| 21 | 21 | 0.0445 |
| 22 | 22 | 0.108 |
| 23 | 23 | 0.107 |
| 24 | 24 | 0.135 |
| 25 | 25 | 0.234 |
| 26 | 26 | 0.413 |
| 27 | 27 | 0.297 |
| 28 | 28 | 0.283 |
| 29 | 29 | 0.224 |
| 3 | 3 | 0.495 |
| 30 | 30 | 0.33 |
| 31 | 31 | 0.393 |
| 32 | 32 | 9.27558e-11 |
| 33 | 33 | 0.847 |
| 34 | 34 | 0.55 |
| 35 | 35 | 0.933 |
| 36 | 36 | 0.0515 |
| 37 | 37 | 0.124 |
| 38 | 38 | 0.622 |
| 39 | 39 | 0.126 |
| 4 | 4 | 0.495 |
| 40 | 40 | 0.231 |
| 41 | 41 | 0.29 |
| 42 | 42 | 0.623 |
| 43 | 43 | 0.565 |
| 44 | 44 | 0.122 |
| 45 | 45 | 0.697 |
| 46 | 46 | 0.456 |
| 47 | 47 | 0.427 |
| 48 | 48 | 0.763 |
| 49 | 49 | 0.915 |
| 5 | 5 | 0.843 |
| 50 | 50 | 0.447 |
| 51 | 51 | 0.829 |
| 52 | 52 | 0.341 |
| 53 | 53 | 0.244 |
| 54 | 54 | 0.688 |
| 55 | 55 | 0.411 |
| 56 | 56 | 0.567 |
| 57 | 57 | 0.915 |
| 58 | 58 | 0.583 |
| 59 | 59 | 0.0999 |
| 6 | 6 | 0.139 |
| 60 | 60 | 0.225 |
| 61 | 61 | 0.365 |
| 62 | 62 | 0.95 |
| 63 | 63 | 0.162 |
| 64 | 64 | 0.889 |
| 65 | 65 | 0.288 |
| 66 | 66 | 0.026 |
| 67 | 67 | 0.969 |
| 68 | 68 | 0.21 |
| 69 | 69 | 0.624 |
| 7 | 7 | 0.187 |
| 70 | 70 | 0.154 |
| 71 | 71 | 0.728 |
| 72 | 72 | 0.987 |
| 73 | 73 | 0.0148 |
| 74 | 74 | 0.249 |
| 75 | 75 | 0.877 |
| 76 | 76 | 0.504 |
| 77 | 77 | 0.00305 |
| 78 | 78 | 0.0731 |
| 79 | 79 | 0.00176 |
| 8 | 8 | 0.121 |
| 80 | 80 | 0.113 |
| 81 | 81 | 0.687 |
| 82 | 82 | 0.477 |
| 83 | 83 | 0.398 |
| 84 | 84 | 0.995 |
| 85 | 85 | 0.0158 |
| 86 | 86 | 0.564 |
| 87 | 87 | 0.54 |
| 88 | 88 | 0.241 |
| 89 | 89 | 0.0188 |
| 9 | 9 | 0.427 |
| 90 | 90 | 0.136 |
| 91 | 91 | 0.985 |
| 92 | 92 | 0.129 |
| 93 | 93 | 0.697 |
| 94 | 94 | 0.389 |
| 95 | 95 | 0.862 |
| 96 | 96 | 0.69 |
| 97 | 97 | 0.626 |
| 98 | 98 | 0.783 |
| 99 | 99 | 0.0622 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11992
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000187 human synovial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000187 (human synovial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
