FF:11381-118B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005539 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005539!sRNA-Seq@SAMD00005539 | ||
|accession_numbers=CAGE;DRX008128;DRR009000;DRZ000425;DRZ001810;DRZ011775;DRZ013160 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057110;DRR062869;DRZ007945!sRNA-Seq;DRX037142;DRR041508;DRZ007150 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000024 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.77!592.87!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.51!320.31!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.25!176.86!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.23!170.14!ZNF385A;;chr14:35873947..35873965,-!p1@NFKBIA!2.13!7843.86!NFKBIA;;chr2:145271342..145271377,-!p5@ZEB2!2.12!132.16!ZEB2;;chr3:101546827..101546847,+!p2@NFKBIZ!2.06!157.77!NFKBIZ;;chr2:145277640..145277771,-!p1@ZEB2!2.03!1334.83!ZEB2;;chr11:47399947..47399961,-!p3@SPI1!2.01!102.21!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.01!101.13!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.00!179.47!RUNX3;;chr19:45971246..45971265,+!p1@FOSB!1.99!1693.99!FOSB;;chr12:72056800..72056834,+!p1@THAP2!1.98!125.22!THAP2;;chr2:157189180..157189290,-!p1@NR4A2!1.88!372.17!NR4A2;;chr20:39317868..39317884,-!p1@MAFB!1.87!819.22!MAFB;;chr8:123793988..123794016,+!p1@ZHX2!1.83!114.80!ZHX2;;chr7:17338324..17338341,+!p3@AHR!1.82!209.20!AHR;;chr6:106534192..106534224,+!p1@PRDM1!1.81!172.09!PRDM1;;chr3:39195075..39195088,-!p1@CSRNP1!1.77!347.65!CSRNP1;;chr2:145275162..145275202,-!p2@ZEB2!1.77!320.53!ZEB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.77!140.62!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!1.77!109.81!NFKBID;;chr7:50344289..50344323,+!p1@IKZF1!1.77!57.94!IKZF1;;chr6:12011943..12012015,+!p2@HIVEP1!1.75!171.22!HIVEP1;;chr10:3827371..3827386,-!p2@KLF6!1.74!426.21!KLF6;;chr11:47399996..47400014,-!p4@SPI1!1.74!54.47!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.73!1027.76!NFKB1;;chr2:192015701..192015743,-!p1@STAT4!1.71!67.49!STAT4;;chr3:101568349..101568365,+!p1@NFKBIZ!1.70!2391.46!NFKBIZ;;chr2:61108695..61108753,+!p1@REL!1.69!310.54!REL;;chr10:104154246..104154347,+!p3@NFKB2!1.69!279.73!NFKB2;;chr14:35872453..35872485,-!p2@NFKBIA!1.69!115.02!NFKBIA;;chr14:75745523..75745537,+!p1@FOS!1.68!5300.06!FOS;;chr12:72056749..72056767,+!p6@THAP2!1.68!52.30!THAP2;;chr6:106534230..106534254,+!p2@PRDM1!1.66!109.59!PRDM1;;chr8:81397820..81397836,+!p2@ZBTB10!1.65!53.60!ZBTB10;;chr12:72056773..72056796,+!p3@THAP2!1.63!53.38!THAP2;;chr9:110252035..110252057,-!p1@KLF4!1.62!613.27!KLF4;;chr19:45252008..45252024,+!p2@BCL3!1.61!126.52!BCL3;;chr2:70142232..70142251,+!p1@MXD1!1.60!209.85!MXD1;;chr8:81397876..81397898,+!p5@ZBTB10!1.60!45.57!ZBTB10;;chr7:50343634..50343717,+!p2@IKZF1!1.60!39.06!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.60!38.63!SPI1;;chr14:35874077..35874091,-!p8@NFKBIA!1.60!38.63!NFKBIA;;chr10:104155480..104155534,+!p2@NFKB2!1.58!228.51!NFKB2;;chr3:39195037..39195069,-!p2@CSRNP1!1.58!220.70!CSRNP1;;chr5:131826457..131826514,-!p1@IRF1!1.54!1250.42!IRF1;;chr16:31885093..31885165,+!p1@ZNF267!1.54!487.84!ZNF267;;chr6:144385698..144385742,-!p2@PLAGL1!1.53!39.28!PLAGL1;;chr4:83822199..83822239,+!p2@THAP9!1.53!38.84!THAP9;;chr14:35872926..35872951,-!p4@NFKBIA!1.52!44.70!NFKBIA;;chr1:151030536..151030549,+!p8@MLLT11!1.51!31.68!MLLT11;;chr8:81397846..81397860,+!p3@ZBTB10!1.48!36.67!ZBTB10;;chr7:115670804..115670825,-!p1@TFEC!1.46!27.56!TFEC;;chr17:38497662..38497713,+!p4@RARA!1.44!30.82!RARA;;chr2:61108808..61108821,+!p3@REL!1.43!32.33!REL;;chr16:69600058..69600065,+!p9@NFAT5!1.43!25.82!NFAT5;;chr17:45810594..45810608,+!p1@TBX21!1.43!25.61!TBX21;;chr10:3827389..3827408,-!p1@KLF6!1.42!1861.52!KLF6;;chr9:117150254..117150271,-!p1@AKNA!1.42!67.27!AKNA;;chr9:102584262..102584276,+!p1@NR4A3!1.42!55.34!NR4A3;;chrX:153305787..153305807,-!p3@MECP2!1.42!25.17!MECP2;;chr9:110250697..110250738,-!p2@KLF4!1.41!28.65!KLF4;;chr1:25256439..25256476,-!p3@RUNX3!1.41!24.96!RUNX3;;chr7:17338266..17338282,+!p1@AHR!1.40!250.00!AHR;;chr10:51572408..51572454,+!p3@NCOA4!1.40!134.98!NCOA4;;chr12:54778351..54778378,-!p6@ZNF385A!1.40!24.31!ZNF385A;;chr14:75746722..75746777,+!p2@FOS!1.39!29.95!FOS;;chr6:15246200..15246214,+!p2@JARID2!1.38!62.50!JARID2;;chr2:185463247..185463263,+!p1@ZNF804A!1.38!40.15!ZNF804A;;chr19:45250948..45250998,+!p3@BCL3!1.37!55.77!BCL3;;chr11:47400045..47400060,-!p6@SPI1!1.37!22.57!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!1.36!209.63!NFKBIE;;chr18:3448455..3448480,+!p5@TGIF1!1.36!39.93!TGIF1;;chr20:50159198..50159299,-!p1@NFATC2!1.36!31.47!NFATC2;;chrY:2803415..2803468,+!p1@ZFY!1.36!22.14!ZFY;;chr8:102218439..102218455,-!p3@ZNF706!1.36!21.70!ZNF706;;chr14:35872494..35872511,-!p5@NFKBIA!1.35!28.43!NFKBIA;;chr2:68592394..68592405,+!p2@PLEK!1.35!21.48!PLEK;;chr2:97202480..97202499,+!p1@ARID5A!1.34!202.91!ARID5A;;chr7:128577972..128578047,+!p1@IRF5!1.34!32.33!IRF5;;chr3:39195139..39195150,-!p3@CSRNP1!1.34!26.26!CSRNP1;;chr10:104154415..104154434,+!p5@NFKB2!1.34!21.05!NFKB2;;chr8:123794038..123794056,+!p5@ZHX2!1.34!20.83!ZHX2;;chr7:149470641..149470694,-!p1@ZNF467!1.33!89.41!ZNF467;;chr14:64971288..64971316,-!p2@ZBTB25!1.33!61.85!ZBTB25;;chr14:35872542..35872553,-!p10@NFKBIA!1.33!20.62!NFKBIA;;chr19:45504688..45504782,+!p1@RELB!1.32!118.05!RELB;;chr2:208394817..208394834,+!p3@CREB1!1.32!78.99!CREB1;;chrX:106960180..106960197,-!p2@TSC22D3!1.32!74.87!TSC22D3;;chr5:142782823..142782854,-!p3@NR3C1!1.32!28.21!NR3C1;;chr9:129567282..129567353,+!p1@ZBTB43!1.30!239.58!ZBTB43;;chr19:33793430..33793447,-!p1@CEBPA!1.30!78.56!CEBPA;;chr1:212782094..212782109,+!p1@ATF3!1.29!485.89!ATF3;;chr3:187463179..187463201,-!p2@BCL6!1.29!75.74!BCL6;;chr6:143266297..143266356,-!p1@HIVEP2!1.28!84.85!HIVEP2;;chr10:35416142..35416169,+!p3@CREM!1.28!46.87!CREM;;chr2:61108771..61108789,+!p4@REL!1.28!27.13!REL;;chrY:21906594..21906622,-!p1@KDM5D!1.28!18.23!KDM5D;;chr19:16435625..16435682,+!p1@KLF2!1.27!554.25!KLF2;;chr9:102584128..102584144,+!p3@NR4A3!1.27!33.64!NR4A3;;chr2:157189617..157189667,-!p4@NR4A2!1.27!17.58!NR4A2;;chrX:106960285..106960299,-!p1@TSC22D3!1.25!438.14!TSC22D3;;chr6:15246261..15246312,+!p1@JARID2!1.25!394.53!JARID2;;chr13:41593392..41593403,-!p7@ELF1!1.25!16.93!ELF1;;chr19:54058073..54058088,+!p1@ZNF331!1.24!16.49!ZNF331;;chr18:77155922..77155939,+!p1@NFATC1!1.23!43.40!NFATC1;;chr7:106809470..106809481,+!p2@HBP1!1.23!22.35!HBP1;;chr2:8822176..8822196,+!p1@ID2!1.22!2130.40!ID2;;chr6:12012170..12012245,+!p1@HIVEP1!1.22!77.91!HIVEP1;;chr15:57211634..57211657,+!p5@TCF12!1.22!23.65!TCF12;;chr4:106066730..106066754,+!p6@TET2!1.22!15.62!TET2;;chr3:63953435..63953499,+!p1@ATXN7!1.22!15.41!ATXN7;;chr22:38597987..38598021,+!p2@MAFF!1.21!92.66!MAFF;;chr12:54694758..54694805,-!p1@NFE2!1.21!18.23!NFE2;;chr9:94186085..94186096,-!p3@NFIL3!1.20!24.74!NFIL3;;chr10:104155659..104155676,+!p4@NFKB2!1.20!18.45!NFKB2;;chr20:56195474..56195506,-!p1@ZBP1!1.20!14.97!ZBP1;;chr19:12902289..12902307,+!p1@JUNB!1.19!3274.04!JUNB;;chr9:3525727..3525828,-!p2@RFX3!1.19!36.67!RFX3;;chr14:35872414..35872425,-!p7@NFKBIA!1.19!16.06!NFKBIA;;chr2:145276113..145276149,-!p28@ZEB2!1.19!14.32!ZEB2;;chrX:129244454..129244488,-!p1@ELF4!1.18!100.48!ELF4;;chr15:60884706..60884743,-!p1@RORA!1.18!72.92!RORA;;chr9:102584159..102584174,+!p2@NR4A3!1.18!25.61!NR4A3;;chr19:54041669..54041697,+!p2@ZNF331!1.18!14.11!ZNF331;;chr11:47399920..47399931,-!p7@SPI1!1.18!14.11!SPI1;;chr21:30671235..30671253,+!p1@BACH1!1.17!172.52!BACH1;;chr1:59249688..59249703,-!p3@JUN!1.17!81.38!JUN;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.44!FOSL2;;chr10:3824332..3824425,-!p4@KLF6!1.17!22.35!KLF6;;chr9:102584241..102584261,+!p4@NR4A3!1.17!21.27!NR4A3;;chr2:145277589..145277612,-!p12@ZEB2!1.17!13.67!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.16!166.01!ZC3H12A;;chr7:104654690..104654704,+!p2@MLL5!1.16!26.69!MLL5;;chr6:15246217..15246228,+!p3@JARID2!1.16!23.65!JARID2;;chr3:150126904..150126958,+!p7@TSC22D2!1.16!23.44!TSC22D2;;chr7:104654718..104654741,+!p3@MLL5!1.16!19.75!MLL5;;chr1:59249707..59249727,-!p1@JUN!1.15!544.26!JUN;;chr2:208031542..208031595,-!p2@KLF7!1.15!92.01!KLF7;;chr21:36260295..36260310,-!p3@RUNX1!1.15!21.27!RUNX1;;chr9:110251836..110251887,-!p4@KLF4!1.15!17.58!KLF4;;chr6:391743..391759,+!p1@IRF4!1.15!13.02!IRF4;;chr2:231090433..231090469,+!p1@SP140!1.15!13.02!SP140;;chr1:157108130..157108173,-!p1@ETV3!1.14!91.58!ETV3;;chrX:106960221..106960236,-!p3@TSC22D3!1.14!35.16!TSC22D3;;chr2:61108878..61108891,+!p5@REL!1.14!12.80!REL;;chr5:133451294..133451310,+!p2@TCF7!1.14!12.80!TCF7;;chr12:52445218..52445237,+!p1@NR4A1!1.13!157.12!NR4A1;;chr21:36421535..36421610,-!p2@RUNX1!1.13!44.70!RUNX1;;chr21:30671690..30671762,+!p2@BACH1!1.13!42.75!BACH1;;chr8:22550982..22550999,-!p1@EGR3!1.13!34.94!EGR3;;chr10:3819310..3819325,-!p5@KLF6!1.13!16.49!KLF6;;chr4:83822246..83822277,+!p5@THAP9!1.13!12.59!THAP9;;chr17:38498594..38498661,+!p2@RARA!1.12!40.58!RARA;;chr3:5020939..5020952,+!p2@BHLHE40!1.12!38.19!BHLHE40;;chr4:106068026..106068084,+!p1@TET2!1.11!108.07!TET2;;chr5:133450365..133450444,+!p1@TCF7!1.11!53.82!TCF7;;chr2:192015677..192015691,-!p3@STAT4!1.11!11.94!STAT4;;chr1:156470515..156470542,-!p2@MEF2D!1.10!60.11!MEF2D;;chr17:7388010..7388017,-!p5@ZBTB4!1.10!19.75!ZBTB4;;chrX:129244430..129244442,-!p5@ELF4!1.10!11.72!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.09!55.12!ETV6;;chr2:192015750..192015793,-!p2@STAT4!1.09!15.41!STAT4;;chr7:150974206..150974255,-!p1@SMARCD3!1.08!68.79!SMARCD3;;chr9:117160738..117160782,-!p2@AKNA!1.08!46.22!AKNA;;chr2:157198916..157198978,-!p2@NR4A2!1.08!38.63!NR4A2;;chr2:145277882..145277967,-!p3@ZEB2!1.08!19.31!ZEB2;;chr6:106546808..106546833,+!p3@PRDM1!1.08!14.11!PRDM1;;chr17:38020392..38020477,-!p1@IKZF3!1.08!11.07!IKZF3;;chr2:208031943..208031978,-!p5@KLF7!1.07!14.32!KLF7;;chr4:103423079..103423112,+!p4@NFKB1!1.07!10.85!NFKB1;;chr19:45251395..45251432,+!p8@BCL3!1.07!10.85!BCL3;;chr2:145277632..145277638,-!p17@ZEB2!1.07!10.63!ZEB2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!249.13!TCF7L2;;chr9:94186101..94186122,-!p1@NFIL3!1.06!147.78!NFIL3;;chr7:17338239..17338262,+!p2@AHR!1.06!79.21!AHR;;chr2:60780753..60780800,-!p1@BCL11A!1.06!52.73!BCL11A;;chr6:12012249..12012266,+!p5@HIVEP1!1.06!18.45!HIVEP1;;chr3:23986824..23986848,+!p2@NR1D2!1.05!57.51!NR1D2;;chr20:48807430..48807439,+!p8@CEBPB!1.05!15.41!CEBPB;;chr2:145274981..145274994,-!p9@ZEB2!1.05!15.19!ZEB2;;chr5:176735063..176735088,-!p2@MXD3!1.05!10.20!MXD3;;chr14:62162285..62162296,+!p3@HIF1A!1.04!52.52!HIF1A;;chr6:91006518..91006570,-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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.77!592.87!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.51!320.31!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.25!176.86!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.23!170.14!ZNF385A;;chr14:35873947..35873965,-!p1@NFKBIA!2.13!7843.86!NFKBIA;;chr2:145271342..145271377,-!p5@ZEB2!2.12!132.16!ZEB2;;chr3:101546827..101546847,+!p2@NFKBIZ!2.06!157.77!NFKBIZ;;chr2:145277640..145277771,-!p1@ZEB2!2.03!1334.83!ZEB2;;chr11:47399947..47399961,-!p3@SPI1!2.01!102.21!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.01!101.13!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.00!179.47!RUNX3;;chr19:45971246..45971265,+!p1@FOSB!1.99!1693.99!FOSB;;chr12:72056800..72056834,+!p1@THAP2!1.98!125.22!THAP2;;chr2:157189180..157189290,-!p1@NR4A2!1.88!372.17!NR4A2;;chr20:39317868..39317884,-!p1@MAFB!1.87!819.22!MAFB;;chr8:123793988..123794016,+!p1@ZHX2!1.83!114.80!ZHX2;;chr7:17338324..17338341,+!p3@AHR!1.82!209.20!AHR;;chr6:106534192..106534224,+!p1@PRDM1!1.81!172.09!PRDM1;;chr3:39195075..39195088,-!p1@CSRNP1!1.77!347.65!CSRNP1;;chr2:145275162..145275202,-!p2@ZEB2!1.77!320.53!ZEB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.77!140.62!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!1.77!109.81!NFKBID;;chr7:50344289..50344323,+!p1@IKZF1!1.77!57.94!IKZF1;;chr6:12011943..12012015,+!p2@HIVEP1!1.75!171.22!HIVEP1;;chr10:3827371..3827386,-!p2@KLF6!1.74!426.21!KLF6;;chr11:47399996..47400014,-!p4@SPI1!1.74!54.47!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.73!1027.76!NFKB1;;chr2:192015701..192015743,-!p1@STAT4!1.71!67.49!STAT4;;chr3:101568349..101568365,+!p1@NFKBIZ!1.70!2391.46!NFKBIZ;;chr2:61108695..61108753,+!p1@REL!1.69!310.54!REL;;chr10:104154246..104154347,+!p3@NFKB2!1.69!279.73!NFKB2;;chr14:35872453..35872485,-!p2@NFKBIA!1.69!115.02!NFKBIA;;chr14:75745523..75745537,+!p1@FOS!1.68!5300.06!FOS;;chr12:72056749..72056767,+!p6@THAP2!1.68!52.30!THAP2;;chr6:106534230..106534254,+!p2@PRDM1!1.66!109.59!PRDM1;;chr8:81397820..81397836,+!p2@ZBTB10!1.65!53.60!ZBTB10;;chr12:72056773..72056796,+!p3@THAP2!1.63!53.38!THAP2;;chr9:110252035..110252057,-!p1@KLF4!1.62!613.27!KLF4;;chr19:45252008..45252024,+!p2@BCL3!1.61!126.52!BCL3;;chr2:70142232..70142251,+!p1@MXD1!1.60!209.85!MXD1;;chr8:81397876..81397898,+!p5@ZBTB10!1.60!45.57!ZBTB10;;chr7:50343634..50343717,+!p2@IKZF1!1.60!39.06!IKZF1;;chr11:47400032..47400043,-!p5@SPI1!1.60!38.63!SPI1;;chr14:35874077..35874091,-!p8@NFKBIA!1.60!38.63!NFKBIA;;chr10:104155480..104155534,+!p2@NFKB2!1.58!228.51!NFKB2;;chr3:39195037..39195069,-!p2@CSRNP1!1.58!220.70!CSRNP1;;chr5:131826457..131826514,-!p1@IRF1!1.54!1250.42!IRF1;;chr16:31885093..31885165,+!p1@ZNF267!1.54!487.84!ZNF267;;chr6:144385698..144385742,-!p2@PLAGL1!1.53!39.28!PLAGL1;;chr4:83822199..83822239,+!p2@THAP9!1.53!38.84!THAP9;;chr14:35872926..35872951,-!p4@NFKBIA!1.52!44.70!NFKBIA;;chr1:151030536..151030549,+!p8@MLLT11!1.51!31.68!MLLT11;;chr8:81397846..81397860,+!p3@ZBTB10!1.48!36.67!ZBTB10;;chr7:115670804..115670825,-!p1@TFEC!1.46!27.56!TFEC;;chr17:38497662..38497713,+!p4@RARA!1.44!30.82!RARA;;chr2:61108808..61108821,+!p3@REL!1.43!32.33!REL;;chr16:69600058..69600065,+!p9@NFAT5!1.43!25.82!NFAT5;;chr17:45810594..45810608,+!p1@TBX21!1.43!25.61!TBX21;;chr10:3827389..3827408,-!p1@KLF6!1.42!1861.52!KLF6;;chr9:117150254..117150271,-!p1@AKNA!1.42!67.27!AKNA;;chr9:102584262..102584276,+!p1@NR4A3!1.42!55.34!NR4A3;;chrX:153305787..153305807,-!p3@MECP2!1.42!25.17!MECP2;;chr9:110250697..110250738,-!p2@KLF4!1.41!28.65!KLF4;;chr1:25256439..25256476,-!p3@RUNX3!1.41!24.96!RUNX3;;chr7:17338266..17338282,+!p1@AHR!1.40!250.00!AHR;;chr10:51572408..51572454,+!p3@NCOA4!1.40!134.98!NCOA4;;chr12:54778351..54778378,-!p6@ZNF385A!1.40!24.31!ZNF385A;;chr14:75746722..75746777,+!p2@FOS!1.39!29.95!FOS;;chr6:15246200..15246214,+!p2@JARID2!1.38!62.50!JARID2;;chr2:185463247..185463263,+!p1@ZNF804A!1.38!40.15!ZNF804A;;chr19:45250948..45250998,+!p3@BCL3!1.37!55.77!BCL3;;chr11:47400045..47400060,-!p6@SPI1!1.37!22.57!SPI1;;chr6:44233252..44233296,-!p1@NFKBIE!1.36!209.63!NFKBIE;;chr18:3448455..3448480,+!p5@TGIF1!1.36!39.93!TGIF1;;chr20:50159198..50159299,-!p1@NFATC2!1.36!31.47!NFATC2;;chrY:2803415..2803468,+!p1@ZFY!1.36!22.14!ZFY;;chr8:102218439..102218455,-!p3@ZNF706!1.36!21.70!ZNF706;;chr14:35872494..35872511,-!p5@NFKBIA!1.35!28.43!NFKBIA;;chr2:68592394..68592405,+!p2@PLEK!1.35!21.48!PLEK;;chr2:97202480..97202499,+!p1@ARID5A!1.34!202.91!ARID5A;;chr7:128577972..128578047,+!p1@IRF5!1.34!32.33!IRF5;;chr3:39195139..39195150,-!p3@CSRNP1!1.34!26.26!CSRNP1;;chr10:104154415..104154434,+!p5@NFKB2!1.34!21.05!NFKB2;;chr8:123794038..123794056,+!p5@ZHX2!1.34!20.83!ZHX2;;chr7:149470641..149470694,-!p1@ZNF467!1.33!89.41!ZNF467;;chr14:64971288..64971316,-!p2@ZBTB25!1.33!61.85!ZBTB25;;chr14:35872542..35872553,-!p10@NFKBIA!1.33!20.62!NFKBIA;;chr19:45504688..45504782,+!p1@RELB!1.32!118.05!RELB;;chr2:208394817..208394834,+!p3@CREB1!1.32!78.99!CREB1;;chrX:106960180..106960197,-!p2@TSC22D3!1.32!74.87!TSC22D3;;chr5:142782823..142782854,-!p3@NR3C1!1.32!28.21!NR3C1;;chr9:129567282..129567353,+!p1@ZBTB43!1.30!239.58!ZBTB43;;chr19:33793430..33793447,-!p1@CEBPA!1.30!78.56!CEBPA;;chr1:212782094..212782109,+!p1@ATF3!1.29!485.89!ATF3;;chr3:187463179..187463201,-!p2@BCL6!1.29!75.74!BCL6;;chr6:143266297..143266356,-!p1@HIVEP2!1.28!84.85!HIVEP2;;chr10:35416142..35416169,+!p3@CREM!1.28!46.87!CREM;;chr2:61108771..61108789,+!p4@REL!1.28!27.13!REL;;chrY:21906594..21906622,-!p1@KDM5D!1.28!18.23!KDM5D;;chr19:16435625..16435682,+!p1@KLF2!1.27!554.25!KLF2;;chr9:102584128..102584144,+!p3@NR4A3!1.27!33.64!NR4A3;;chr2:157189617..157189667,-!p4@NR4A2!1.27!17.58!NR4A2;;chrX:106960285..106960299,-!p1@TSC22D3!1.25!438.14!TSC22D3;;chr6:15246261..15246312,+!p1@JARID2!1.25!394.53!JARID2;;chr13:41593392..41593403,-!p7@ELF1!1.25!16.93!ELF1;;chr19:54058073..54058088,+!p1@ZNF331!1.24!16.49!ZNF331;;chr18:77155922..77155939,+!p1@NFATC1!1.23!43.40!NFATC1;;chr7:106809470..106809481,+!p2@HBP1!1.23!22.35!HBP1;;chr2:8822176..8822196,+!p1@ID2!1.22!2130.40!ID2;;chr6:12012170..12012245,+!p1@HIVEP1!1.22!77.91!HIVEP1;;chr15:57211634..57211657,+!p5@TCF12!1.22!23.65!TCF12;;chr4:106066730..106066754,+!p6@TET2!1.22!15.62!TET2;;chr3:63953435..63953499,+!p1@ATXN7!1.22!15.41!ATXN7;;chr22:38597987..38598021,+!p2@MAFF!1.21!92.66!MAFF;;chr12:54694758..54694805,-!p1@NFE2!1.21!18.23!NFE2;;chr9:94186085..94186096,-!p3@NFIL3!1.20!24.74!NFIL3;;chr10:104155659..104155676,+!p4@NFKB2!1.20!18.45!NFKB2;;chr20:56195474..56195506,-!p1@ZBP1!1.20!14.97!ZBP1;;chr19:12902289..12902307,+!p1@JUNB!1.19!3274.04!JUNB;;chr9:3525727..3525828,-!p2@RFX3!1.19!36.67!RFX3;;chr14:35872414..35872425,-!p7@NFKBIA!1.19!16.06!NFKBIA;;chr2:145276113..145276149,-!p28@ZEB2!1.19!14.32!ZEB2;;chrX:129244454..129244488,-!p1@ELF4!1.18!100.48!ELF4;;chr15:60884706..60884743,-!p1@RORA!1.18!72.92!RORA;;chr9:102584159..102584174,+!p2@NR4A3!1.18!25.61!NR4A3;;chr19:54041669..54041697,+!p2@ZNF331!1.18!14.11!ZNF331;;chr11:47399920..47399931,-!p7@SPI1!1.18!14.11!SPI1;;chr21:30671235..30671253,+!p1@BACH1!1.17!172.52!BACH1;;chr1:59249688..59249703,-!p3@JUN!1.17!81.38!JUN;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.44!FOSL2;;chr10:3824332..3824425,-!p4@KLF6!1.17!22.35!KLF6;;chr9:102584241..102584261,+!p4@NR4A3!1.17!21.27!NR4A3;;chr2:145277589..145277612,-!p12@ZEB2!1.17!13.67!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.16!166.01!ZC3H12A;;chr7:104654690..104654704,+!p2@MLL5!1.16!26.69!MLL5;;chr6:15246217..15246228,+!p3@JARID2!1.16!23.65!JARID2;;chr3:150126904..150126958,+!p7@TSC22D2!1.16!23.44!TSC22D2;;chr7:104654718..104654741,+!p3@MLL5!1.16!19.75!MLL5;;chr1:59249707..59249727,-!p1@JUN!1.15!544.26!JUN;;chr2:208031542..208031595,-!p2@KLF7!1.15!92.01!KLF7;;chr21:36260295..36260310,-!p3@RUNX1!1.15!21.27!RUNX1;;chr9:110251836..110251887,-!p4@KLF4!1.15!17.58!KLF4;;chr6:391743..391759,+!p1@IRF4!1.15!13.02!IRF4;;chr2:231090433..231090469,+!p1@SP140!1.15!13.02!SP140;;chr1:157108130..157108173,-!p1@ETV3!1.14!91.58!ETV3;;chrX:106960221..106960236,-!p3@TSC22D3!1.14!35.16!TSC22D3;;chr2:61108878..61108891,+!p5@REL!1.14!12.80!REL;;chr5:133451294..133451310,+!p2@TCF7!1.14!12.80!TCF7;;chr12:52445218..52445237,+!p1@NR4A1!1.13!157.12!NR4A1;;chr21:36421535..36421610,-!p2@RUNX1!1.13!44.70!RUNX1;;chr21:30671690..30671762,+!p2@BACH1!1.13!42.75!BACH1;;chr8:22550982..22550999,-!p1@EGR3!1.13!34.94!EGR3;;chr10:3819310..3819325,-!p5@KLF6!1.13!16.49!KLF6;;chr4:83822246..83822277,+!p5@THAP9!1.13!12.59!THAP9;;chr17:38498594..38498661,+!p2@RARA!1.12!40.58!RARA;;chr3:5020939..5020952,+!p2@BHLHE40!1.12!38.19!BHLHE40;;chr4:106068026..106068084,+!p1@TET2!1.11!108.07!TET2;;chr5:133450365..133450444,+!p1@TCF7!1.11!53.82!TCF7;;chr2:192015677..192015691,-!p3@STAT4!1.11!11.94!STAT4;;chr1:156470515..156470542,-!p2@MEF2D!1.10!60.11!MEF2D;;chr17:7388010..7388017,-!p5@ZBTB4!1.10!19.75!ZBTB4;;chrX:129244430..129244442,-!p5@ELF4!1.10!11.72!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.09!55.12!ETV6;;chr2:192015750..192015793,-!p2@STAT4!1.09!15.41!STAT4;;chr7:150974206..150974255,-!p1@SMARCD3!1.08!68.79!SMARCD3;;chr9:117160738..117160782,-!p2@AKNA!1.08!46.22!AKNA;;chr2:157198916..157198978,-!p2@NR4A2!1.08!38.63!NR4A2;;chr2:145277882..145277967,-!p3@ZEB2!1.08!19.31!ZEB2;;chr6:106546808..106546833,+!p3@PRDM1!1.08!14.11!PRDM1;;chr17:38020392..38020477,-!p1@IKZF3!1.08!11.07!IKZF3;;chr2:208031943..208031978,-!p5@KLF7!1.07!14.32!KLF7;;chr4:103423079..103423112,+!p4@NFKB1!1.07!10.85!NFKB1;;chr19:45251395..45251432,+!p8@BCL3!1.07!10.85!BCL3;;chr2:145277632..145277638,-!p17@ZEB2!1.07!10.63!ZEB2;;chr10:114709999..114710031,+!p1@TCF7L2!1.06!249.13!TCF7L2;;chr9:94186101..94186122,-!p1@NFIL3!1.06!147.78!NFIL3;;chr7:17338239..17338262,+!p2@AHR!1.06!79.21!AHR;;chr2:60780753..60780800,-!p1@BCL11A!1.06!52.73!BCL11A;;chr6:12012249..12012266,+!p5@HIVEP1!1.06!18.45!HIVEP1;;chr3:23986824..23986848,+!p2@NR1D2!1.05!57.51!NR1D2;;chr20:48807430..48807439,+!p8@CEBPB!1.05!15.41!CEBPB;;chr2:145274981..145274994,-!p9@ZEB2!1.05!15.19!ZEB2;;chr5:176735063..176735088,-!p2@MXD3!1.05!10.20!MXD3;;chr14:62162285..62162296,+!p3@HIF1A!1.04!52.52!HIF1A;;chr6:91006518..91006570,-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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002397;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520Monocytes%252c%2520donor3.CNhs11997.11381-118B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11381-118B4 | |id=FF:11381-118B4 | ||
|is_a=EFO:0002091;;FF:0000024 | |is_a=EFO:0002091;;FF:0000024 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11997 | |||
|library_id_phase_based=2:CNhs11997 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11381 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.GTGAAA.11381 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11381 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.GTGAAA.11381 | |||
|name=CD14+ Monocytes, donor3 | |name=CD14+ Monocytes, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11997,LSID837,release011,COMPLETED | |profile_hcage=CNhs11997,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=3H100-30-10 | |rna_catalog_number=3H100-30-10 | ||
| Line 58: | Line 82: | ||
|rna_tube_id=118B4 | |rna_tube_id=118B4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=RDhi10052!SRhi10009.GTGAAA | |||
|sample_age=53 | |sample_age=53 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=NFKB1_REL_RELA:5.00802147952;PAX2:4.4861226971;BACH2:4.27306071447;FOS_FOS{B,L1}_JUN{B,D}:4.1430396822;PAX3,7:3.94975488562;NFE2:3.9392172028;FOSL2:3.90617560687;NFIL3:3.79421002968;RUNX1..3:3.46741080413;CREB1:3.46429516924;ATF4:3.35774922684;ATF5_CREB3:3.32794077528;SPI1:3.32142615636;SPIB:3.31159287073;ETS1,2:3.23586834716;CEBPA,B_DDIT3:3.03235167326;HLF:2.71615811824;TGIF1:2.51531036824;FOXN1:2.42742956798;IRF1,2:2.41044495208;BPTF:2.3592727711;DMAP1_NCOR{1,2}_SMARC:2.34115634169;FOXP3:2.3020788055;NFE2L2:2.25954493146;RFX2..5_RFXANK_RFXAP:2.24999831405;FOXO1,3,4:2.23211009395;JUN:2.17569506681;RXRA_VDR{dimer}:2.17022133692;NFATC1..3:2.06249947075;HMGA1,2:1.82144204597;STAT2,4,6:1.80374572756;MAFB:1.80178159982;FOX{D1,D2}:1.6490204017;NANOG{mouse}:1.64730988212;IRF7:1.64227427173;ELF1,2,4:1.63276860893;SREBF1,2:1.50273418884;ATF2:1.4326074263;PITX1..3:1.41667605514;HIF1A:1.37537442088;NKX2-1,4:1.36583783651;FOXP1:1.28641172443;ATF6:1.26529978871;EP300:1.23026025191;RORA:1.14074947038;NFE2L1:0.909048976466;HMX1:0.895428601837;PAX8:0.848996440751;ZBTB16:0.79439496071;T:0.768636595279;RBPJ:0.686425249518;HOX{A5,B5}:0.469873855507;XBP1:0.42799004563;PDX1:0.421757271181;PPARG:0.408079419563;EGR1..3:0.377848160722;FOX{F1,F2,J1}:0.320610681286;RFX1:0.316531664248;HBP1_HMGB_SSRP1_UBTF:0.298650624979;HSF1,2:0.235705116895;BREu{core}:0.229462590611;FOXL1:0.113529489437;ZNF384:0.100963529996;GATA4:0.0935554743208;NANOG:0.00252008672664;HOXA9_MEIS1:-0.00600396520218;SOX2:-0.0412321270406;GLI1..3:-0.0471170577424;TOPORS:-0.138364539569;MEF2{A,B,C,D}:-0.15108257336;RXR{A,B,G}:-0.154000919996;TBX4,5:-0.190683258686;POU2F1..3:-0.203543216205;ALX4:-0.271735750168;NKX6-1,2:-0.306033540261;AHR_ARNT_ARNT2:-0.380871675029;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.389617948421;TFAP2{A,C}:-0.401793923104;TLX2:-0.406900853607;SRF:-0.418276282906;TFCP2:-0.428090257133;IKZF2:-0.454885353308;SMAD1..7,9:-0.464985970415;NKX3-1:-0.488490071409;TFDP1:-0.490335809669;MTE{core}:-0.575070199131;POU5F1:-0.589139455544;CDX1,2,4:-0.591942363248;TFAP2B:-0.60826851424;ESR1:-0.610276751377;NR1H4:-0.618644996623;FOXD3:-0.644550802013;IKZF1:-0.690522637427;MED-1{core}:-0.758154436771;ESRRA:-0.7582796701;ZFP161:-0.806126933847;SP1:-0.81869739253;MYB:-0.885919694247;MZF1:-0.893911328333;EN1,2:-0.926017933152;MYFfamily:-1.00685058973;FOXM1:-1.01676970505;DBP:-1.0424334402;NHLH1,2:-1.05250346543;PATZ1:-1.08189333295;TFAP4:-1.11272928796;STAT1,3:-1.11736695767;E2F1..5:-1.17227770309;RREB1:-1.17610253058;OCT4_SOX2{dimer}:-1.18388593344;HNF4A_NR2F1,2:-1.20255908598;TAL1_TCF{3,4,12}:-1.20774660453;PRDM1:-1.20923179719;GATA6:-1.2492958733;TBP:-1.25528767428;NR5A1,2:-1.25670903893;PRRX1,2:-1.28980464517;PAX6:-1.28986152151;ZNF238:-1.29319771682;REST:-1.30567442775;SOX5:-1.31381512961;HES1:-1.3303326204;STAT5{A,B}:-1.34593498784;MTF1:-1.34964138785;HIC1:-1.36347528114;CRX:-1.40175940664;VSX1,2:-1.43807741081;HNF1A:-1.43914534828;FOX{I1,J2}:-1.44305281337;FOXA2:-1.48005875384;MAZ:-1.50211827825;PAX4:-1.5112449331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.51198257288;ZEB1:-1.56935851082;XCPE1{core}:-1.58609566489;SOX{8,9,10}:-1.60901109098;GCM1,2:-1.61117257124;CUX2:-1.6116304158;TEF:-1.62876395705;NR6A1:-1.64271123304;PAX5:-1.65205070481;NFY{A,B,C}:-1.68015640477;NR3C1:-1.70302842661;EBF1:-1.70455173702;SPZ1:-1.72625709611;FOXQ1:-1.73145055142;MYOD1:-1.75726950156;TP53:-1.87777888427;ZNF423:-1.87926435831;ZNF148:-1.88351192497;ELK1,4_GABP{A,B1}:-1.89030586356;MYBL2:-1.91925794804;PAX1,9:-1.96078302943;GTF2A1,2:-1.96257070335;LEF1_TCF7_TCF7L1,2:-1.9663449296;TEAD1:-2.0071077492;GTF2I:-2.01864353994;SNAI1..3:-2.08252673702;PBX1:-2.08566769609;ZBTB6:-2.13957611018;HOX{A6,A7,B6,B7}:-2.14182936062;NKX2-3_NKX2-5:-2.17094333178;POU3F1..4:-2.17095732719;GZF1:-2.20873783247;NRF1:-2.20902465351;AIRE:-2.2759528519;TLX1..3_NFIC{dimer}:-2.27810824546;POU6F1:-2.29351158951;NKX2-2,8:-2.31800837714;ZIC1..3:-2.31937325611;bHLH_family:-2.33597817142;ADNP_IRX_SIX_ZHX:-2.48685767208;LMO2:-2.51087056713;ONECUT1,2:-2.53974202927;HOX{A4,D4}:-2.54083222629;GFI1:-2.56581279225;CDC5L:-2.62264501235;SOX17:-2.70272897314;ARID5B:-2.71452983707;AR:-2.77708866257;KLF4:-2.79042110835;ALX1:-2.82869684763;GFI1B:-2.86831282587;LHX3,4:-2.95459596462;UFEwm:-2.96737089903;ZNF143:-3.05170610125;NFIX:-3.06675089241;EVI1:-3.12781193244;POU1F1:-3.26740627784;YY1:-3.50977618688;NKX3-2:-3.65660500048;HAND1,2:-4.44500643882 | |top_motifs=NFKB1_REL_RELA:5.00802147952;PAX2:4.4861226971;BACH2:4.27306071447;FOS_FOS{B,L1}_JUN{B,D}:4.1430396822;PAX3,7:3.94975488562;NFE2:3.9392172028;FOSL2:3.90617560687;NFIL3:3.79421002968;RUNX1..3:3.46741080413;CREB1:3.46429516924;ATF4:3.35774922684;ATF5_CREB3:3.32794077528;SPI1:3.32142615636;SPIB:3.31159287073;ETS1,2:3.23586834716;CEBPA,B_DDIT3:3.03235167326;HLF:2.71615811824;TGIF1:2.51531036824;FOXN1:2.42742956798;IRF1,2:2.41044495208;BPTF:2.3592727711;DMAP1_NCOR{1,2}_SMARC:2.34115634169;FOXP3:2.3020788055;NFE2L2:2.25954493146;RFX2..5_RFXANK_RFXAP:2.24999831405;FOXO1,3,4:2.23211009395;JUN:2.17569506681;RXRA_VDR{dimer}:2.17022133692;NFATC1..3:2.06249947075;HMGA1,2:1.82144204597;STAT2,4,6:1.80374572756;MAFB:1.80178159982;FOX{D1,D2}:1.6490204017;NANOG{mouse}:1.64730988212;IRF7:1.64227427173;ELF1,2,4:1.63276860893;SREBF1,2:1.50273418884;ATF2:1.4326074263;PITX1..3:1.41667605514;HIF1A:1.37537442088;NKX2-1,4:1.36583783651;FOXP1:1.28641172443;ATF6:1.26529978871;EP300:1.23026025191;RORA:1.14074947038;NFE2L1:0.909048976466;HMX1:0.895428601837;PAX8:0.848996440751;ZBTB16:0.79439496071;T:0.768636595279;RBPJ:0.686425249518;HOX{A5,B5}:0.469873855507;XBP1:0.42799004563;PDX1:0.421757271181;PPARG:0.408079419563;EGR1..3:0.377848160722;FOX{F1,F2,J1}:0.320610681286;RFX1:0.316531664248;HBP1_HMGB_SSRP1_UBTF:0.298650624979;HSF1,2:0.235705116895;BREu{core}:0.229462590611;FOXL1:0.113529489437;ZNF384:0.100963529996;GATA4:0.0935554743208;NANOG:0.00252008672664;HOXA9_MEIS1:-0.00600396520218;SOX2:-0.0412321270406;GLI1..3:-0.0471170577424;TOPORS:-0.138364539569;MEF2{A,B,C,D}:-0.15108257336;RXR{A,B,G}:-0.154000919996;TBX4,5:-0.190683258686;POU2F1..3:-0.203543216205;ALX4:-0.271735750168;NKX6-1,2:-0.306033540261;AHR_ARNT_ARNT2:-0.380871675029;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.389617948421;TFAP2{A,C}:-0.401793923104;TLX2:-0.406900853607;SRF:-0.418276282906;TFCP2:-0.428090257133;IKZF2:-0.454885353308;SMAD1..7,9:-0.464985970415;NKX3-1:-0.488490071409;TFDP1:-0.490335809669;MTE{core}:-0.575070199131;POU5F1:-0.589139455544;CDX1,2,4:-0.591942363248;TFAP2B:-0.60826851424;ESR1:-0.610276751377;NR1H4:-0.618644996623;FOXD3:-0.644550802013;IKZF1:-0.690522637427;MED-1{core}:-0.758154436771;ESRRA:-0.7582796701;ZFP161:-0.806126933847;SP1:-0.81869739253;MYB:-0.885919694247;MZF1:-0.893911328333;EN1,2:-0.926017933152;MYFfamily:-1.00685058973;FOXM1:-1.01676970505;DBP:-1.0424334402;NHLH1,2:-1.05250346543;PATZ1:-1.08189333295;TFAP4:-1.11272928796;STAT1,3:-1.11736695767;E2F1..5:-1.17227770309;RREB1:-1.17610253058;OCT4_SOX2{dimer}:-1.18388593344;HNF4A_NR2F1,2:-1.20255908598;TAL1_TCF{3,4,12}:-1.20774660453;PRDM1:-1.20923179719;GATA6:-1.2492958733;TBP:-1.25528767428;NR5A1,2:-1.25670903893;PRRX1,2:-1.28980464517;PAX6:-1.28986152151;ZNF238:-1.29319771682;REST:-1.30567442775;SOX5:-1.31381512961;HES1:-1.3303326204;STAT5{A,B}:-1.34593498784;MTF1:-1.34964138785;HIC1:-1.36347528114;CRX:-1.40175940664;VSX1,2:-1.43807741081;HNF1A:-1.43914534828;FOX{I1,J2}:-1.44305281337;FOXA2:-1.48005875384;MAZ:-1.50211827825;PAX4:-1.5112449331;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.51198257288;ZEB1:-1.56935851082;XCPE1{core}:-1.58609566489;SOX{8,9,10}:-1.60901109098;GCM1,2:-1.61117257124;CUX2:-1.6116304158;TEF:-1.62876395705;NR6A1:-1.64271123304;PAX5:-1.65205070481;NFY{A,B,C}:-1.68015640477;NR3C1:-1.70302842661;EBF1:-1.70455173702;SPZ1:-1.72625709611;FOXQ1:-1.73145055142;MYOD1:-1.75726950156;TP53:-1.87777888427;ZNF423:-1.87926435831;ZNF148:-1.88351192497;ELK1,4_GABP{A,B1}:-1.89030586356;MYBL2:-1.91925794804;PAX1,9:-1.96078302943;GTF2A1,2:-1.96257070335;LEF1_TCF7_TCF7L1,2:-1.9663449296;TEAD1:-2.0071077492;GTF2I:-2.01864353994;SNAI1..3:-2.08252673702;PBX1:-2.08566769609;ZBTB6:-2.13957611018;HOX{A6,A7,B6,B7}:-2.14182936062;NKX2-3_NKX2-5:-2.17094333178;POU3F1..4:-2.17095732719;GZF1:-2.20873783247;NRF1:-2.20902465351;AIRE:-2.2759528519;TLX1..3_NFIC{dimer}:-2.27810824546;POU6F1:-2.29351158951;NKX2-2,8:-2.31800837714;ZIC1..3:-2.31937325611;bHLH_family:-2.33597817142;ADNP_IRX_SIX_ZHX:-2.48685767208;LMO2:-2.51087056713;ONECUT1,2:-2.53974202927;HOX{A4,D4}:-2.54083222629;GFI1:-2.56581279225;CDC5L:-2.62264501235;SOX17:-2.70272897314;ARID5B:-2.71452983707;AR:-2.77708866257;KLF4:-2.79042110835;ALX1:-2.82869684763;GFI1B:-2.86831282587;LHX3,4:-2.95459596462;UFEwm:-2.96737089903;ZNF143:-3.05170610125;NFIX:-3.06675089241;EVI1:-3.12781193244;POU1F1:-3.26740627784;YY1:-3.50977618688;NKX3-2:-3.65660500048;HAND1,2:-4.44500643882 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11381-118B4;search_select_hide=table117:FF:11381-118B4 | |||
}} | }} | ||
Latest revision as of 17:56, 4 June 2020
| Name: | CD14+ Monocytes, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11997 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11997
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11997
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.384 |
| 10 | 10 | 0.0124 |
| 100 | 100 | 0.844 |
| 101 | 101 | 0.772 |
| 102 | 102 | 0.931 |
| 103 | 103 | 0.772 |
| 104 | 104 | 0.456 |
| 105 | 105 | 0.0884 |
| 106 | 106 | 8.38751e-4 |
| 107 | 107 | 0.483 |
| 108 | 108 | 0.505 |
| 109 | 109 | 0.419 |
| 11 | 11 | 0.443 |
| 110 | 110 | 0.486 |
| 111 | 111 | 0.0817 |
| 112 | 112 | 0.708 |
| 113 | 113 | 0.132 |
| 114 | 114 | 0.217 |
| 115 | 115 | 0.129 |
| 116 | 116 | 0.671 |
| 117 | 117 | 0.0314 |
| 118 | 118 | 0.147 |
| 119 | 119 | 0.581 |
| 12 | 12 | 0.183 |
| 120 | 120 | 0.271 |
| 121 | 121 | 0.558 |
| 122 | 122 | 0.6 |
| 123 | 123 | 0.00532 |
| 124 | 124 | 0.614 |
| 125 | 125 | 0.288 |
| 126 | 126 | 0.268 |
| 127 | 127 | 0.832 |
| 128 | 128 | 0.0866 |
| 129 | 129 | 0.888 |
| 13 | 13 | 0.133 |
| 130 | 130 | 0.213 |
| 131 | 131 | 0.81 |
| 132 | 132 | 0.0702 |
| 133 | 133 | 0.61 |
| 134 | 134 | 0.847 |
| 135 | 135 | 0.967 |
| 136 | 136 | 0.968 |
| 137 | 137 | 0.0054 |
| 138 | 138 | 0.27 |
| 139 | 139 | 0.0929 |
| 14 | 14 | 0.337 |
| 140 | 140 | 0.396 |
| 141 | 141 | 0.432 |
| 142 | 142 | 0.243 |
| 143 | 143 | 0.0416 |
| 144 | 144 | 0.61 |
| 145 | 145 | 0.508 |
| 146 | 146 | 0.75 |
| 147 | 147 | 0.442 |
| 148 | 148 | 0.0578 |
| 149 | 149 | 0.556 |
| 15 | 15 | 0.187 |
| 150 | 150 | 0.676 |
| 151 | 151 | 0.183 |
| 152 | 152 | 0.209 |
| 153 | 153 | 0.787 |
| 154 | 154 | 0.403 |
| 155 | 155 | 0.527 |
| 156 | 156 | 0.725 |
| 157 | 157 | 0.638 |
| 158 | 158 | 0.0225 |
| 159 | 159 | 0.268 |
| 16 | 16 | 0.922 |
| 160 | 160 | 0.938 |
| 161 | 161 | 0.751 |
| 162 | 162 | 0.112 |
| 163 | 163 | 0.155 |
| 164 | 164 | 0.0538 |
| 165 | 165 | 0.36 |
| 166 | 166 | 0.558 |
| 167 | 167 | 0.183 |
| 168 | 168 | 0.154 |
| 169 | 169 | 0.0818 |
| 17 | 17 | 0.448 |
| 18 | 18 | 0.316 |
| 19 | 19 | 0.936 |
| 2 | 2 | 0.23 |
| 20 | 20 | 0.191 |
| 21 | 21 | 0.927 |
| 22 | 22 | 0.475 |
| 23 | 23 | 0.0953 |
| 24 | 24 | 0.756 |
| 25 | 25 | 0.322 |
| 26 | 26 | 0.136 |
| 27 | 27 | 0.382 |
| 28 | 28 | 0.367 |
| 29 | 29 | 0.222 |
| 3 | 3 | 0.309 |
| 30 | 30 | 0.197 |
| 31 | 31 | 0.887 |
| 32 | 32 | 0.0819 |
| 33 | 33 | 0.27 |
| 34 | 34 | 0.695 |
| 35 | 35 | 0.146 |
| 36 | 36 | 0.075 |
| 37 | 37 | 0.147 |
| 38 | 38 | 0.534 |
| 39 | 39 | 0.87 |
| 4 | 4 | 0.72 |
| 40 | 40 | 0.201 |
| 41 | 41 | 0.00661 |
| 42 | 42 | 0.494 |
| 43 | 43 | 0.0353 |
| 44 | 44 | 0.313 |
| 45 | 45 | 0.88 |
| 46 | 46 | 0.484 |
| 47 | 47 | 0.954 |
| 48 | 48 | 0.85 |
| 49 | 49 | 0.0855 |
| 5 | 5 | 0.284 |
| 50 | 50 | 0.859 |
| 51 | 51 | 0.588 |
| 52 | 52 | 0.482 |
| 53 | 53 | 0.21 |
| 54 | 54 | 0.651 |
| 55 | 55 | 0.955 |
| 56 | 56 | 0.976 |
| 57 | 57 | 0.981 |
| 58 | 58 | 0.227 |
| 59 | 59 | 0.51 |
| 6 | 6 | 0.962 |
| 60 | 60 | 0.091 |
| 61 | 61 | 0.488 |
| 62 | 62 | 0.183 |
| 63 | 63 | 0.802 |
| 64 | 64 | 0.583 |
| 65 | 65 | 0.35 |
| 66 | 66 | 0.0423 |
| 67 | 67 | 0.651 |
| 68 | 68 | 0.281 |
| 69 | 69 | 0.304 |
| 7 | 7 | 0.288 |
| 70 | 70 | 0.0898 |
| 71 | 71 | 0.0457 |
| 72 | 72 | 0.238 |
| 73 | 73 | 0.142 |
| 74 | 74 | 0.0678 |
| 75 | 75 | 0.159 |
| 76 | 76 | 0.0445 |
| 77 | 77 | 0.923 |
| 78 | 78 | 0.375 |
| 79 | 79 | 0.79 |
| 8 | 8 | 0.953 |
| 80 | 80 | 0.115 |
| 81 | 81 | 0.425 |
| 82 | 82 | 0.402 |
| 83 | 83 | 0.335 |
| 84 | 84 | 0.0415 |
| 85 | 85 | 0.103 |
| 86 | 86 | 0.0276 |
| 87 | 87 | 0.762 |
| 88 | 88 | 0.785 |
| 89 | 89 | 0.756 |
| 9 | 9 | 0.475 |
| 90 | 90 | 0.28 |
| 91 | 91 | 0.384 |
| 92 | 92 | 0.587 |
| 93 | 93 | 0.692 |
| 94 | 94 | 0.103 |
| 95 | 95 | 0.228 |
| 96 | 96 | 0.593 |
| 97 | 97 | 0.722 |
| 98 | 98 | 0.13 |
| 99 | 99 | 0.00241 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11997
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000024 (human CD14-positive monocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)
