FF:11393-118C7: Difference between revisions

Latest revision as of 17:57, 4 June 2020

Name:	Endothelial Cells - Lymphatic, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs11906
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	capillary
dev stage	fetus
sex	unknown
age	fetal
cell type	endothelial cell, lymphatic
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3676
catalog number	SC2015
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005940

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11906		CAGE		DRX008225		DRR009097

Accession ID Hg19

Library id		BAM		CTSS
CNhs11906		DRZ000522		DRZ001907

Accession ID Hg38

Library id		BAM		CTSS
CNhs11906		DRZ011872		DRZ013257

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005940

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10005.GTGGCC		sRNA-Seq		DRX037065		DRR041431

Accession ID Hg19

Library id		BAM		CTSS
SRhi10005.GTGGCC		DRZ007073

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.021
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.132
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.52
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.114
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0212
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0342
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.551
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0183
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.168
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0811
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.223
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.524
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.147
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11906

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00264
MA0003.1	MA0003.1	0.305
MA0004.1	MA0004.1	0.797
MA0006.1	MA0006.1	0.451
MA0007.1	MA0007.1	0.619
MA0009.1	MA0009.1	0.641
MA0014.1	MA0014.1	0.922
MA0017.1	MA0017.1	0.036
MA0018.2	MA0018.2	0.0222
MA0019.1	MA0019.1	0.0303
MA0024.1	MA0024.1	0.776
MA0025.1	MA0025.1	0.468
MA0027.1	MA0027.1	0.675
MA0028.1	MA0028.1	0.864
MA0029.1	MA0029.1	0.819
MA0030.1	MA0030.1	0.144
MA0031.1	MA0031.1	0.0241
MA0035.2	MA0035.2	0.315
MA0038.1	MA0038.1	0.269
MA0039.2	MA0039.2	0.688
MA0040.1	MA0040.1	0.274
MA0041.1	MA0041.1	0.0814
MA0042.1	MA0042.1	0.176
MA0043.1	MA0043.1	0.0143
MA0046.1	MA0046.1	0.938
MA0047.2	MA0047.2	0.00525
MA0048.1	MA0048.1	0.871
MA0050.1	MA0050.1	0.808
MA0051.1	MA0051.1	0.135
MA0052.1	MA0052.1	0.785
MA0055.1	MA0055.1	0.865
MA0057.1	MA0057.1	0.191
MA0058.1	MA0058.1	0.405
MA0059.1	MA0059.1	0.22
MA0060.1	MA0060.1	0.234
MA0061.1	MA0061.1	0.174
MA0062.2	MA0062.2	0.817
MA0065.2	MA0065.2	0.00188
MA0066.1	MA0066.1	0.0648
MA0067.1	MA0067.1	0.806
MA0068.1	MA0068.1	0.319
MA0069.1	MA0069.1	0.0427
MA0070.1	MA0070.1	0.921
MA0071.1	MA0071.1	0.384
MA0072.1	MA0072.1	0.403
MA0073.1	MA0073.1	0.811
MA0074.1	MA0074.1	0.765
MA0076.1	MA0076.1	0.73
MA0077.1	MA0077.1	4.68116e-8
MA0078.1	MA0078.1	0.012
MA0079.2	MA0079.2	0.671
MA0080.2	MA0080.2	2.16792e-4
MA0081.1	MA0081.1	0.0805
MA0083.1	MA0083.1	0.857
MA0084.1	MA0084.1	0.1
MA0087.1	MA0087.1	0.0359
MA0088.1	MA0088.1	0.637
MA0090.1	MA0090.1	0.104
MA0091.1	MA0091.1	0.453
MA0092.1	MA0092.1	0.596
MA0093.1	MA0093.1	0.697
MA0099.2	MA0099.2	0.527
MA0100.1	MA0100.1	0.677
MA0101.1	MA0101.1	0.0626
MA0102.2	MA0102.2	0.0194
MA0103.1	MA0103.1	0.00734
MA0104.2	MA0104.2	0.162
MA0105.1	MA0105.1	0.0103
MA0106.1	MA0106.1	0.109
MA0107.1	MA0107.1	0.116
MA0108.2	MA0108.2	0.0794
MA0111.1	MA0111.1	0.649
MA0112.2	MA0112.2	4.84369e-4
MA0113.1	MA0113.1	0.853
MA0114.1	MA0114.1	0.0182
MA0115.1	MA0115.1	0.00994
MA0116.1	MA0116.1	9.2125e-5
MA0117.1	MA0117.1	0.37
MA0119.1	MA0119.1	0.799
MA0122.1	MA0122.1	0.266
MA0124.1	MA0124.1	0.435
MA0125.1	MA0125.1	0.974
MA0131.1	MA0131.1	0.0924
MA0135.1	MA0135.1	0.351
MA0136.1	MA0136.1	0.0179
MA0137.2	MA0137.2	0.7
MA0138.2	MA0138.2	0.296
MA0139.1	MA0139.1	0.854
MA0140.1	MA0140.1	0.124
MA0141.1	MA0141.1	0.128
MA0142.1	MA0142.1	0.363
MA0143.1	MA0143.1	0.593
MA0144.1	MA0144.1	0.525
MA0145.1	MA0145.1	0.953
MA0146.1	MA0146.1	0.0333
MA0147.1	MA0147.1	0.135
MA0148.1	MA0148.1	0.00198
MA0149.1	MA0149.1	0.74
MA0150.1	MA0150.1	0.576
MA0152.1	MA0152.1	0.992
MA0153.1	MA0153.1	0.797
MA0154.1	MA0154.1	0.0092
MA0155.1	MA0155.1	0.614
MA0156.1	MA0156.1	3.07113e-4
MA0157.1	MA0157.1	0.0956
MA0159.1	MA0159.1	0.658
MA0160.1	MA0160.1	0.0962
MA0162.1	MA0162.1	0.511
MA0163.1	MA0163.1	1.62069e-4
MA0164.1	MA0164.1	0.221
MA0258.1	MA0258.1	0.019
MA0259.1	MA0259.1	0.395

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11906

Novel motif	Logo	P-value
1	1	0.232
10	10	0.0673
100	100	0.728
101	101	0.389
102	102	0.422
103	103	0.807
104	104	0.765
105	105	0.0873
106	106	0.11
107	107	0.412
108	108	0.61
109	109	0.0777
11	11	0.0894
110	110	0.88
111	111	0.677
112	112	0.288
113	113	0.856
114	114	0.491
115	115	0.118
116	116	0.00262
117	117	0.628
118	118	0.324
119	119	0.428
12	12	0.506
120	120	0.15
121	121	0.44
122	122	0.401
123	123	0.108
124	124	0.0265
125	125	0.503
126	126	0.571
127	127	0.0939
128	128	0.0974
129	129	0.875
13	13	0.585
130	130	0.863
131	131	0.303
132	132	0.675
133	133	0.999
134	134	0.985
135	135	0.215
136	136	0.455
137	137	0.656
138	138	0.82
139	139	0.296
14	14	0.514
140	140	0.0342
141	141	0.739
142	142	0.0176
143	143	0.324
144	144	0.0908
145	145	0.725
146	146	0.837
147	147	0.26
148	148	0.0108
149	149	0.324
15	15	0.214
150	150	0.893
151	151	0.401
152	152	0.458
153	153	0.387
154	154	0.588
155	155	0.22
156	156	0.058
157	157	0.376
158	158	0.978
159	159	0.786
16	16	0.0793
160	160	0.298
161	161	0.0134
162	162	0.438
163	163	0.358
164	164	0.494
165	165	0.845
166	166	0.356
167	167	0.104
168	168	0.753
169	169	0.286
17	17	0.451
18	18	0.0173
19	19	0.565
2	2	0.453
20	20	0.471
21	21	0.357
22	22	0.296
23	23	0.924
24	24	0.765
25	25	0.217
26	26	0.00897
27	27	0.368
28	28	0.905
29	29	0.392
3	3	0.207
30	30	0.632
31	31	0.48
32	32	0.0226
33	33	0.913
34	34	0.877
35	35	0.381
36	36	0.144
37	37	0.46
38	38	0.994
39	39	0.256
4	4	0.211
40	40	0.629
41	41	0.236
42	42	0.488
43	43	0.0865
44	44	0.0211
45	45	0.966
46	46	0.0648
47	47	0.062
48	48	0.259
49	49	0.11
5	5	0.653
50	50	0.658
51	51	0.365
52	52	0.251
53	53	0.59
54	54	0.335
55	55	0.819
56	56	0.232
57	57	0.571
58	58	0.0891
59	59	0.0864
6	6	0.108
60	60	0.0711
61	61	0.328
62	62	0.0325
63	63	0.229
64	64	0.0277
65	65	0.292
66	66	0.579
67	67	0.336
68	68	0.956
69	69	0.294
7	7	0.213
70	70	0.00288
71	71	0.091
72	72	0.895
73	73	0.622
74	74	0.539
75	75	0.552
76	76	0.864
77	77	0.0239
78	78	0.383
79	79	0.632
8	8	0.0861
80	80	0.717
81	81	0.184
82	82	0.327
83	83	0.851
84	84	0.206
85	85	0.118
86	86	0.887
87	87	0.328
88	88	0.228
89	89	0.237
9	9	0.431
90	90	0.339
91	91	0.596
92	92	0.541
93	93	0.845
94	94	0.125
95	95	0.474
96	96	0.413
97	97	0.392
98	98	0.0577
99	99	0.768

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11906

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000049 human lymphatic endothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0002138 (endothelial cell of lymphatic vessel)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002049 (vasculature)
0007798 (vascular system)
0001473 (lymphatic vessel)
0002465 (lymphoid system)
0004535 (cardiovascular system)
0004536 (lymph vasculature)
0006558 (lymphatic part of lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000049 (human lymphatic endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)
CL:0005022 (vascular lymphangioblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000055,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000480,UBERON:0001009,UBERON:0001062,UBERON:0001473,UBERON:0002049,UBERON:0002193,UBERON:0002405,UBERON:0002465,UBERON:0004111,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0007798
+|DRA_sample_Accession=CAGE@SAMD00005940
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000115,CL:0000144,CL:0000213,CL:0000215,CL:0000220,CL:0000222,CL:0000255,CL:0000548,CL:0002078,CL:0002138,CL:0002139,CL:0002321,CL:0002371
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005940
+|accession_numbers=CAGE;DRX008225;DRR009097;DRZ000522;DRZ001907;DRZ011872;DRZ013257
+|accession_numbers_RNASeq=sRNA-Seq;DRX037065;DRR041431;DRZ007073
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002049,UBERON:0007798,UBERON:0001473,UBERON:0002465,UBERON:0004535,UBERON:0004536,UBERON:0006558,UBERON:0002193,UBERON:0002405,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0002138
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000049
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:39870339..39870443,-!p1@ERG!2.37!235.98!ERG;;chr18:53068911..53068935,-!p4@TCF4!2.31!225.94!TCF4;;chr20:62680984..62680999,-!p1@SOX18!2.16!186.10!SOX18;;chr17:6926362..6926377,+!p1@BCL6B!1.92!81.34!BCL6B;;chr1:214161272..214161322,+!p1@PROX1!1.89!107.11!PROX1;;chr22:19748231..19748317,+!p1@TBX1!1.86!70.96!TBX1;;chr8:10588010..10588030,-!p1@SOX7!1.80!61.59!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.76!55.90!SOX17;;chr5:71803177..71803255,-!p1@ZNF366!1.73!52.22!ZNF366;;chr12:96588368..96588394,+!p3@ELK3!1.68!122.17!ELK3;;chr9:124991204..124991246,-!p1@LHX6!1.60!38.83!LHX6;;chr13:72441315..72441454,-!p1@DACH1!1.53!64.27!DACH1;;chr7:15726243..15726293,-!p2@MEOX2!1.53!33.14!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!1.53!32.80!HIF3A;;chr17:46682321..46682362,-!p1@HOXB6!1.53!32.80!HOXB6;;chr18:22932080..22932170,-!p1@ZNF521!1.52!130.21!ZNF521;;chr7:15726296..15726315,-!p1@MEOX2!1.52!32.47!MEOX2;;chr3:169381420..169381535,-!p1@MECOM!1.51!36.48!MECOM;;chr9:14314131..14314147,-!p2@NFIB!1.44!142.59!NFIB;;chr7:115670804..115670825,-!p1@TFEC!1.44!26.44!TFEC;;chr18:53177984..53178004,-!p17@TCF4!1.41!24.77!TCF4;;chr18:53068982..53068993,-!p20@TCF4!1.37!22.43!TCF4;;chr4:146404119..146404158,+!p9@SMAD1!1.36!22.09!SMAD1;;chr10:94449703..94449718,+!p1@HHEX!1.31!73.97!HHEX;;chr4:146403912..146403972,+!p5@SMAD1!1.31!24.77!SMAD1;;chr3:168864315..168864339,-!p2@MECOM!1.29!30.46!MECOM;;chr3:114343039..114343085,-!p8@ZBTB20!1.27!17.74!ZBTB20;;chr2:177053386..177053402,+!p1@HOXD1!1.26!17.07!HOXD1;;chr17:46688334..46688385,-!p1@HOXB7!1.25!24.10!HOXB7;;chr2:46524537..46524553,+!p1@EPAS1!1.22!1496.87!EPAS1;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.06!KDM5D;;chr20:50159198..50159299,-!p1@NFATC2!1.20!21.76!NFATC2;;chr18:52989031..52989079,-!p2@TCF4!1.19!34.14!TCF4;;chr9:16705069..16705086,-!p3@BNC2!1.19!14.39!BNC2;;chr9:14314566..14314618,-!p1@NFIB!1.18!165.69!NFIB;;chr13:72441074..72441172,-!p2@DACH1!1.17!13.72!DACH1;;chr18:53257001..53257015,-!p5@TCF4!1.15!22.76!TCF4;;chr4:146402843..146402864,+!p3@SMAD1!1.14!25.44!SMAD1;;chr19:53496768..53496799,-!p1@ZNF702P!1.14!19.75!ZNF702P;;chr12:80084137..80084165,-!p10@PAWR!1.12!15.73!PAWR;;chr13:72441506..72441562,-!p3@DACH1!1.12!12.05!DACH1;;chr8:106330656..106330684,+!p1@ZFPM2!1.09!29.46!ZFPM2;;chr2:177001290..177001315,+!p1@HOXD3!1.09!11.38!HOXD3;;chr1:158985493..158985535,+!p4@IFI16!1.08!16.74!IFI16;;chr18:52989565..52989623,-!p9@TCF4!1.08!14.06!TCF4;;chr3:12330560..12330579,+!p1@PPARG!1.08!12.72!PPARG;;chr18:53068940..53068951,-!p21@TCF4!1.07!10.71!TCF4;;chr12:80084167..80084197,-!p5@PAWR!1.05!24.10!PAWR;;chr3:168865194..168865245,-!p3@MECOM!1.05!13.39!MECOM;;chr7:27196267..27196311,-!p1@HOXA7!1.03!9.71!HOXA7;;chr1:200008734..200008765,+!p2@NR5A2!1.00!9.04!NR5A2;;chr2:176994408..176994492,+!p1@HOXD8!1.00!9.04!HOXD8;;chr4:146404160..146404186,+!p13@SMAD1!0.99!8.70!SMAD1;;chr18:22932004..22932021,-!p2@ZNF521!0.99!8.70!ZNF521;;chr10:131762504..131762555,-!p1@EBF3!0.99!8.70!EBF3;;chr18:53255415..53255491,-!p1@TCF4!0.98!74.31!TCF4;;chr5:88178983..88179012,-!p1@MEF2C!0.98!68.28!MEF2C;;chr1:158979686..158979745,+!p1@IFI16!0.96!273.13!IFI16;;chr9:14314106..14314119,-!p5@NFIB!0.96!15.06!NFIB;;chrY:2803415..2803468,+!p1@ZFY!0.96!8.03!ZFY;;chr18:52989001..52989030,-!p10@TCF4!0.95!8.70!TCF4;;chr22:38597987..38598021,+!p2@MAFF!0.94!49.20!MAFF;;chr19:13213511..13213545,-!p2@LYL1!0.94!8.37!LYL1;;chr17:41739283..41739297,-!p1@MEOX1!0.94!7.70!MEOX1;;chr18:22931979..22931992,-!p3@ZNF521!0.94!7.70!ZNF521;;chr8:106330696..106330719,+!p2@ZFPM2!0.93!9.71!ZFPM2;;chr3:114343826..114343869,-!p4@ZBTB20!0.90!14.39!ZBTB20;;chr17:46690839..46690884,-!p1@HOXB8!0.90!7.03!HOXB8;;chr18:53068893..53068902,-!p28@TCF4!0.90!7.03!TCF4;;chr3:178789522..178789564,-!p2@ZMAT3!0.89!52.89!ZMAT3;;chr2:176981499..176981522,+!p2@HOXD10!0.89!6.69!HOXD10;;chr4:146401920..146401926,+!p14@SMAD1!0.89!6.69!SMAD1;;chr7:15726220..15726236,-!p4@MEOX2!0.89!6.69!MEOX2;;chr6:21593973..21593988,+!p1@SOX4!0.88!247.36!SOX4;;chr9:14313893..14313908,-!p7@NFIB!0.87!9.37!NFIB;;chr12:80084018..80084035,-!p17@PAWR!0.87!6.36!PAWR;;chr3:128206762..128206781,-!p2@GATA2!0.86!41.51!GATA2;;chr7:113726357..113726443,+!p1@FOXP2!0.85!10.71!FOXP2;;chr7:15726176..15726191,-!p3@MEOX2!0.85!6.02!MEOX2;;chr22:19746969..19746987,+!p2@TBX1!0.85!6.02!TBX1;;chr3:168864383..168864400,-!p7@MECOM!0.85!6.02!MECOM;;chr11:128563652..128563689,+!p3@FLI1!0.85!6.02!FLI1;;chr9:14314066..14314075,-!p11@NFIB!0.85!6.02!NFIB;;chr9:14314946..14314983,-!p8@NFIB!0.85!6.02!NFIB;;chr17:46655672..46655697,-!p3@HOXB4!0.85!6.02!HOXB4;;chr15:57210961..57211012,+!p3@TCF12!0.84!20.08!TCF12;;chr1:205601064..205601087,-!p4@ELK4!0.84!12.05!ELK4;;chr19:53496806..53496848,-!p2@ZNF702P!0.83!9.04!ZNF702P;;chr19:45908292..45908374,-!p1@PPP1R13L!0.82!53.89!PPP1R13L;;chr10:35484804..35484902,+!p2@CREM!0.82!22.76!CREM;;chr20:50721803..50721857,-!p2@ZFP64!0.82!9.04!ZFP64;;chr10:31288398..31288455,-!p2@ZNF438!0.82!6.69!ZNF438;;chr13:41240737..41240787,-!p1@FOXO1!0.81!69.62!FOXO1;;chr3:114343768..114343822,-!p1@ZBTB20!0.81!25.44!ZBTB20;;chr2:46524897..46524911,+!p2@EPAS1!0.81!16.07!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!0.81!7.70!HOXB7;;chr17:1959369..1959388,+!p2@HIC1!0.80!15.06!HIC1;;chr10:45495946..45495976,+!p2@ZNF22!0.80!5.36!ZNF22;;chr7:27205136..27205164,-!p1@HOXA9!0.80!5.36!HOXA9;;chr19:46800289..46800327,+!p2@HIF3A!0.80!5.36!HIF3A;;chr1:244214577..244214593,+!p1@ZNF238!0.80!5.36!ZNF238;;chr12:80084303..80084332,-!p1@PAWR!0.79!32.80!PAWR;;chr16:69599899..69599919,+!p2@NFAT5!0.78!62.26!NFAT5;;chr9:14314522..14314556,-!p3@NFIB!0.78!12.38!NFIB;;chr2:176987441..176987454,+!p1@HOXD9!0.78!5.02!HOXD9;;chr1:200011711..200011752,+!p3@NR5A2!0.78!5.02!NR5A2;;chr11:128563948..128564003,+!p1@FLI1!0.77!65.27!FLI1;;chr4:146402997..146403020,+!p1@SMAD1!0.77!37.49!SMAD1;;chr6:106534230..106534254,+!p2@PRDM1!0.77!13.05!PRDM1;;chr18:53255839..53255854,-!p13@TCF4!0.76!5.69!TCF4;;chr18:53177899..53177918,-!p33@TCF4!0.75!4.69!TCF4;;chr6:21597765..21597779,+!p2@SOX4!0.73!39.50!SOX4;;chr2:85360499..85360598,+!p1@TCF7L1!0.73!27.45!TCF7L1;;chr18:53257027..53257052,-!p3@TCF4!0.73!19.08!TCF4;;chr18:53089538..53089578,-!p14@TCF4!0.73!4.35!TCF4;;chr12:80084120..80084136,-!p15@PAWR!0.73!4.35!PAWR;;chr13:72440772..72440847,-!p5@DACH1!0.73!4.35!DACH1;;chr7:27192185..27192209,-!p1@HOXA3!0.73!4.35!HOXA3;;chr3:33482052..33482116,-!p2@UBP1!0.71!6.69!UBP1;;chr6:106534192..106534224,+!p1@PRDM1!0.70!12.38!PRDM1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.70!12.05!ZC3H7B;;chr12:80084279..80084293,-!p8@PAWR!0.70!7.03!PAWR;;chr15:96876966..96877017,+!p12@NR2F2!0.70!6.02!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.70!4.02!HOXB3;;chr1:47695003..47695042,-!p2@TAL1!0.70!4.02!TAL1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.68!34.81!L3MBTL3;;chr9:3525968..3526016,-!p1@RFX3!0.68!24.77!RFX3;;chr4:38665810..38665827,+!p1@KLF3!0.67!62.59!KLF3;;chr11:65430554..65430579,-!p3@RELA!0.67!10.38!RELA;;chr19:35455110..35455149,-!p1@ZNF792!0.67!7.70!ZNF792;;chr17:46691732..46691766,-!p4@HOXB8!0.67!3.68!HOXB8;;chr10:31288370..31288393,-!p3@ZNF438!0.67!3.68!ZNF438;;chr5:88119580..88119602,-!p17@MEF2C!0.67!3.68!MEF2C;;chr1:47697539..47697573,-!p3@TAL1!0.67!3.68!TAL1;;chr2:46602901..46602926,+!p7@EPAS1!0.66!5.02!EPAS1;;chr5:132299008..132299026,-!p5@AFF4!0.65!8.70!AFF4;;chr12:80084862..80084884,-!p7@PAWR!0.65!8.03!PAWR;;chr11:113930291..113930339,+!p2@ZBTB16!0.65!6.02!ZBTB16;;chr15:96874012..96874042,+!p2@NR2F2!0.64!35.48!NR2F2;;chr9:3525910..3525955,-!p4@RFX3!0.64!11.38!RFX3;;chr17:46655704..46655718,-!p2@HOXB4!0.64!5.36!HOXB4;;chr1:23696448..23696453,-!p5@ZNF436!0.64!4.35!ZNF436;;chr18:53069219..53069253,-!p35@TCF4!0.64!3.35!TCF4;;chr13:72440434..72440479,-!p6@DACH1!0.64!3.35!DACH1;;chr14:74256787..74256858,-!p6@C14orf43!0.64!3.35!C14orf43;;chr22:19747040..19747054,+!p3@TBX1!0.64!3.35!TBX1;;chr2:176987463..176987479,+!p2@HOXD9!0.64!3.35!HOXD9;;chr4:146402827..146402839,+!p10@SMAD1!0.64!3.35!SMAD1;;chr15:96873984..96873999,+!p3@NR2F2!0.63!28.12!NR2F2;;chr6:7108569..7108683,+!p3@RREB1!0.63!14.73!RREB1;;chr10:94449675..94449694,+!p2@HHEX!0.63!10.04!HHEX;;chr19:49864746..49864780,-!p2@TEAD2!0.63!4.69!TEAD2;;chr13:41240717..41240735,-!p2@FOXO1!0.62!25.44!FOXO1;;chr11:128392273..128392308,-!p2@ETS1!0.62!15.73!ETS1;;chr15:60884706..60884743,-!p1@RORA!0.61!18.74!RORA;;chr5:88179195..88179224,-!p3@MEF2C!0.61!5.36!MEF2C;;chr11:113930425..113930471,+!p1@ZBTB16!0.61!4.69!ZBTB16;;chr1:8877692..8877732,-!p1@RERE!0.60!28.79!RERE;;chr6:28092375..28092412,+!p1@ZSCAN16!0.60!14.73!ZSCAN16;;chr4:146402966..146402985,+!p2@SMAD1!0.60!13.05!SMAD1;;chr15:60884747..60884774,-!p3@RORA!0.60!8.37!RORA;;chr2:231280954..231280965,+!p2@SP100!0.60!6.02!SP100;;chr22:41697484..41697496,+!p3@ZC3H7B!0.60!4.02!ZC3H7B;;chr3:21792682..21792720,-!p1@ZNF385D!0.60!3.01!ZNF385D;;chr1:214161328..214161348,+!p2@PROX1!0.60!3.01!PROX1;;chr10:45496320..45496336,+!p3@ZNF22!0.60!3.01!ZNF22;;chr10:94451574..94451587,+!p6@HHEX!0.60!3.01!HHEX;;chr17:46675558..46675577,-!p2@HOXB6!0.60!3.01!HOXB6;;chr18:53069201..53069216,-!p39@TCF4!0.60!3.01!TCF4;;chr15:96873921..96873946,+!p1@NR2F2!0.59!99.08!NR2F2;;chr2:238536207..238536290,+!p2@LRRFIP1!0.59!34.14!LRRFIP1;;chr7:26191809..26191890,+!p1@NFE2L3!0.59!17.07!NFE2L3;;chr5:124084493..124084524,-!p2@ZNF608!0.59!7.36!ZNF608;;chr4:206390..206444,+!p1@ZNF876P!0.59!5.69!ZNF876P;;chr19:13213662..13213686,-!p1@LYL1!0.59!4.69!LYL1;;chr7:64467057..64467078,-!p1@ZNF117!0.58!64.60!ZNF117;;chr10:31608127..31608156,+!p1@ZEB1!0.58!63.93!ZEB1;;chr8:146228226..146228264,-!p2@ZNF252!0.58!7.70!ZNF252P;;chr18:5295679..5295734,-!p2@ZFP161!0.58!7.03!ZFP161;;chr1:23696308..23696339,-!p2@ZNF436!0.58!6.69!ZNF436;;chr12:49454026..49454049,-!p9@MLL2!0.58!3.35!MLL2;;chr10:3827389..3827408,-!p1@KLF6!0.57!258.40!KLF6;;chr6:126112074..126112144,+!p1@NCOA7!0.57!44.85!NCOA7;;chr17:1958388..1958404,+!p1@HIC1!0.57!21.09!HIC1;;chr1:8763440..8763460,-!p2@RERE!0.57!16.74!RERE;;chr4:87857474..87857489,+!p7@AFF1!0.57!5.36!AFF1;;chr2:177001366..177001379,+!p4@HOXD3!0.57!2.68!HOXD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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002138;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001473;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0000222,CL:0005022
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Lymphatic%252c%2520donor3.CNhs11906.11393-118C7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11393-118C7
-|is_a=EFO:0002091;;FF:0000002;;FF:0000049;;FF:0000210
+|is_a=EFO:0002091;;FF:0000049
+|is_obsolete=
+|library_id=CNhs11906
+|library_id_phase_based=2:CNhs11906
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11393
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GTGGCC.11393
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11393
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GTGGCC.11393
 |name=Endothelial Cells - Lymphatic, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11906,LSID834,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=118
 |rna_catalog_number=SC2015
@@ Line 56: / Line 82: @@
 |rna_tube_id=118C7
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10005.GTGGCC
 |sample_age=fetal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 97: @@
 |sample_ethnicity=unknown
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.53497011679443e-225!GO:0043226;organelle;4.95299636628884e-178!GO:0043229;intracellular organelle;2.1275477865712e-177!GO:0043231;intracellular membrane-bound organelle;7.19101103203693e-175!GO:0043227;membrane-bound organelle;9.51710946666654e-175!GO:0005737;cytoplasm;6.63294937810803e-171!GO:0044444;cytoplasmic part;1.12012332404158e-117!GO:0044422;organelle part;9.20339372973403e-116!GO:0044446;intracellular organelle part;2.95030152977017e-114!GO:0044238;primary metabolic process;4.96351731911042e-87!GO:0044237;cellular metabolic process;1.82928242143576e-84!GO:0043170;macromolecule metabolic process;2.75744397868681e-84!GO:0005515;protein binding;8.27748424912966e-84!GO:0032991;macromolecular complex;4.27167179026602e-74!GO:0005634;nucleus;2.28748990391065e-70!GO:0044428;nuclear part;5.41208115114289e-61!GO:0030529;ribonucleoprotein complex;6.11641225892585e-61!GO:0003723;RNA binding;7.00394878279433e-60!GO:0043233;organelle lumen;1.67828271858075e-59!GO:0031974;membrane-enclosed lumen;1.67828271858075e-59!GO:0019538;protein metabolic process;4.43838521494287e-54!GO:0043283;biopolymer metabolic process;1.19175625195137e-51!GO:0016043;cellular component organization and biogenesis;1.06283564257921e-48!GO:0031090;organelle membrane;9.21198578116646e-48!GO:0044267;cellular protein metabolic process;1.33259607102261e-46!GO:0044260;cellular macromolecule metabolic process;1.3933241302298e-46!GO:0033036;macromolecule localization;4.35379804053068e-45!GO:0015031;protein transport;1.50179696946488e-44!GO:0005739;mitochondrion;1.61919064098446e-44!GO:0045184;establishment of protein localization;4.05475417959921e-41!GO:0008104;protein localization;4.44870798655428e-41!GO:0010467;gene expression;4.91728201905274e-39!GO:0006396;RNA processing;2.27127090872957e-38!GO:0031981;nuclear lumen;3.03278203405313e-38!GO:0043234;protein complex;3.05750602835899e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.721141368739e-37!GO:0006412;translation;2.15700615246921e-35!GO:0046907;intracellular transport;2.36676405584477e-35!GO:0005829;cytosol;2.40581815404181e-34!GO:0016071;mRNA metabolic process;6.86730072639915e-34!GO:0005840;ribosome;1.51921929478963e-33!GO:0031967;organelle envelope;2.95360780121633e-32!GO:0031975;envelope;6.45236681311857e-32!GO:0008380;RNA splicing;1.38262705330003e-30!GO:0044429;mitochondrial part;2.35951625365566e-30!GO:0006886;intracellular protein transport;3.64454401596316e-30!GO:0006996;organelle organization and biogenesis;6.13517036717014e-30!GO:0003735;structural constituent of ribosome;3.36498284855336e-29!GO:0006397;mRNA processing;1.45038850110595e-28!GO:0065003;macromolecular complex assembly;2.04453465684212e-27!GO:0009059;macromolecule biosynthetic process;3.50163570039989e-27!GO:0009058;biosynthetic process;1.04527381232799e-26!GO:0000166;nucleotide binding;6.50544062353173e-26!GO:0005654;nucleoplasm;1.70080849772614e-25!GO:0033279;ribosomal subunit;2.71657300954261e-25!GO:0044249;cellular biosynthetic process;1.29613325547421e-24!GO:0022607;cellular component assembly;2.05956512672215e-24!GO:0043228;non-membrane-bound organelle;4.96020973451662e-24!GO:0043232;intracellular non-membrane-bound organelle;4.96020973451662e-24!GO:0051649;establishment of cellular localization;5.13057105852687e-24!GO:0051641;cellular localization;5.64908135174618e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.71071415405353e-23!GO:0012505;endomembrane system;4.6895467195144e-23!GO:0005681;spliceosome;1.45276425262297e-21!GO:0006259;DNA metabolic process;2.47277375367745e-21!GO:0005740;mitochondrial envelope;2.53474945112698e-21!GO:0006512;ubiquitin cycle;1.19821550429036e-20!GO:0044451;nucleoplasm part;1.30140109566587e-20!GO:0043412;biopolymer modification;1.31905654907877e-20!GO:0016462;pyrophosphatase activity;1.35063262615782e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.40235384453377e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.95009107188342e-20!GO:0031966;mitochondrial membrane;2.42285951807573e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.54609062105352e-20!GO:0003676;nucleic acid binding;3.5726589826931e-20!GO:0017111;nucleoside-triphosphatase activity;4.39961246056051e-20!GO:0005794;Golgi apparatus;9.99890765378941e-20!GO:0032553;ribonucleotide binding;2.03059727436525e-19!GO:0032555;purine ribonucleotide binding;2.03059727436525e-19!GO:0016874;ligase activity;2.85521308802388e-19!GO:0019866;organelle inner membrane;3.74647499830202e-19!GO:0016192;vesicle-mediated transport;4.16570737715858e-19!GO:0005783;endoplasmic reticulum;4.32261892166898e-19!GO:0016070;RNA metabolic process;5.42520999160834e-19!GO:0006464;protein modification process;7.09541311170268e-19!GO:0017076;purine nucleotide binding;1.38520046783899e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.10507079431361e-18!GO:0019941;modification-dependent protein catabolic process;3.87587935184092e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.87587935184092e-18!GO:0006511;ubiquitin-dependent protein catabolic process;4.21929990539006e-18!GO:0006457;protein folding;5.17626234893266e-18!GO:0044445;cytosolic part;5.32853703429801e-18!GO:0044257;cellular protein catabolic process;5.36679936621194e-18!GO:0044265;cellular macromolecule catabolic process;8.51949132379026e-18!GO:0006119;oxidative phosphorylation;1.77404993121444e-17!GO:0008134;transcription factor binding;1.83210594281892e-17!GO:0005743;mitochondrial inner membrane;2.39946209787335e-17!GO:0007049;cell cycle;3.94802835037118e-17!GO:0048770;pigment granule;6.7167433589271e-17!GO:0042470;melanosome;6.7167433589271e-17!GO:0043285;biopolymer catabolic process;1.32739317906284e-16!GO:0043687;post-translational protein modification;2.54201785165315e-16!GO:0022618;protein-RNA complex assembly;3.60174516640718e-16!GO:0048193;Golgi vesicle transport;6.53635483512459e-16!GO:0050794;regulation of cellular process;6.61851320875195e-16!GO:0030163;protein catabolic process;9.00099186194424e-16!GO:0009057;macromolecule catabolic process;1.88027426211173e-15!GO:0005524;ATP binding;4.71359234257425e-15!GO:0044432;endoplasmic reticulum part;4.98037098794949e-15!GO:0032559;adenyl ribonucleotide binding;5.54898360046083e-15!GO:0006605;protein targeting;3.11364968661179e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.37419468412092e-14!GO:0030554;adenyl nucleotide binding;4.41750345891654e-14!GO:0015935;small ribosomal subunit;1.32597779341518e-13!GO:0006974;response to DNA damage stimulus;1.35980126114877e-13!GO:0044455;mitochondrial membrane part;3.33686770729142e-13!GO:0008135;translation factor activity, nucleic acid binding;4.53220819472829e-13!GO:0005730;nucleolus;8.76110118658805e-13!GO:0016604;nuclear body;1.18848068798254e-12!GO:0012501;programmed cell death;1.28121800244433e-12!GO:0044248;cellular catabolic process;1.29471822215101e-12!GO:0051082;unfolded protein binding;1.48951471936806e-12!GO:0006915;apoptosis;1.78633153499041e-12!GO:0015934;large ribosomal subunit;2.09140009456313e-12!GO:0022402;cell cycle process;2.94337971184042e-12!GO:0008639;small protein conjugating enzyme activity;2.95088844567126e-12!GO:0004842;ubiquitin-protein ligase activity;4.80885995845293e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;6.71488027858885e-12!GO:0000375;RNA splicing, via transesterification reactions;6.71488027858885e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.71488027858885e-12!GO:0019787;small conjugating protein ligase activity;8.92550350034404e-12!GO:0005635;nuclear envelope;9.22046035430834e-12!GO:0031980;mitochondrial lumen;1.07898492779796e-11!GO:0005759;mitochondrial matrix;1.07898492779796e-11!GO:0016887;ATPase activity;1.5129463970167e-11!GO:0003712;transcription cofactor activity;1.5129463970167e-11!GO:0051186;cofactor metabolic process;1.8249376826645e-11!GO:0042623;ATPase activity, coupled;2.19392166653732e-11!GO:0005746;mitochondrial respiratory chain;2.29197283174903e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.21162700357997e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.22607312412929e-11!GO:0050789;regulation of biological process;3.2281833462752e-11!GO:0008219;cell death;3.50259001529836e-11!GO:0016265;death;3.50259001529836e-11!GO:0008565;protein transporter activity;3.74977710366097e-11!GO:0005793;ER-Golgi intermediate compartment;5.48950360038062e-11!GO:0006281;DNA repair;5.85597267977917e-11!GO:0003743;translation initiation factor activity;6.78756788870875e-11!GO:0004386;helicase activity;7.26709052009385e-11!GO:0006461;protein complex assembly;1.06841190839817e-10!GO:0031965;nuclear membrane;1.15549402145371e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.17326594464372e-10!GO:0016607;nuclear speck;1.3273882331959e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.72969409706544e-10!GO:0003954;NADH dehydrogenase activity;1.72969409706544e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.72969409706544e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.25477866791622e-10!GO:0006413;translational initiation;2.61404716075448e-10!GO:0016881;acid-amino acid ligase activity;2.76175185724523e-10!GO:0005789;endoplasmic reticulum membrane;2.96990697985218e-10!GO:0006446;regulation of translational initiation;3.87489033488436e-10!GO:0044453;nuclear membrane part;4.63391167336955e-10!GO:0009719;response to endogenous stimulus;4.88117801744524e-10!GO:0051726;regulation of cell cycle;5.36428080150217e-10!GO:0048523;negative regulation of cellular process;9.4443312827273e-10!GO:0000074;regulation of progression through cell cycle;1.00736613004506e-09!GO:0006913;nucleocytoplasmic transport;1.55886741126756e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.66021682945086e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.7010921219437e-09!GO:0042775;organelle ATP synthesis coupled electron transport;2.4896346079525e-09!GO:0042773;ATP synthesis coupled electron transport;2.4896346079525e-09!GO:0044431;Golgi apparatus part;2.78920152931712e-09!GO:0006793;phosphorus metabolic process;2.78920152931712e-09!GO:0006796;phosphate metabolic process;2.78920152931712e-09!GO:0031252;leading edge;2.82686810634069e-09!GO:0031988;membrane-bound vesicle;3.05188058137792e-09!GO:0008026;ATP-dependent helicase activity;3.56229292951034e-09!GO:0051169;nuclear transport;3.8451516803329e-09!GO:0016023;cytoplasmic membrane-bound vesicle;4.62462823891501e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.77643264066181e-09!GO:0051276;chromosome organization and biogenesis;5.05984833547764e-09!GO:0009259;ribonucleotide metabolic process;5.13924844315304e-09!GO:0030964;NADH dehydrogenase complex (quinone);6.81847419361965e-09!GO:0045271;respiratory chain complex I;6.81847419361965e-09!GO:0005747;mitochondrial respiratory chain complex I;6.81847419361965e-09!GO:0006888;ER to Golgi vesicle-mediated transport;7.74034883541976e-09!GO:0006732;coenzyme metabolic process;7.97493312790554e-09!GO:0000278;mitotic cell cycle;8.03653664517958e-09!GO:0006163;purine nucleotide metabolic process;8.25437803917729e-09!GO:0016310;phosphorylation;9.65144247541624e-09!GO:0006366;transcription from RNA polymerase II promoter;9.7125947615355e-09!GO:0005768;endosome;1.02376640766206e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.03578292379855e-08!GO:0009150;purine ribonucleotide metabolic process;1.13300095776165e-08!GO:0030036;actin cytoskeleton organization and biogenesis;1.31552036956204e-08!GO:0005761;mitochondrial ribosome;1.78653234552784e-08!GO:0000313;organellar ribosome;1.78653234552784e-08!GO:0031982;vesicle;2.23059107541856e-08!GO:0048519;negative regulation of biological process;2.55441132486597e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.59563853821502e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;2.72462198602238e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.34906830273819e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.5505982338398e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.91330353487547e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.12949184296779e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.12949184296779e-08!GO:0031410;cytoplasmic vesicle;4.5673865486851e-08!GO:0009141;nucleoside triphosphate metabolic process;5.95161226391489e-08!GO:0005643;nuclear pore;6.29772003758215e-08!GO:0009056;catabolic process;6.4440609602041e-08!GO:0042254;ribosome biogenesis and assembly;6.82251319754972e-08!GO:0019899;enzyme binding;6.90712850182438e-08!GO:0006403;RNA localization;7.6278235812198e-08!GO:0006323;DNA packaging;8.04729780984677e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.71002816235992e-08!GO:0042981;regulation of apoptosis;9.26967607774534e-08!GO:0006164;purine nucleotide biosynthetic process;9.67515069177894e-08!GO:0065007;biological regulation;1.07786624211412e-07!GO:0050657;nucleic acid transport;1.1126187966847e-07!GO:0051236;establishment of RNA localization;1.1126187966847e-07!GO:0050658;RNA transport;1.1126187966847e-07!GO:0043067;regulation of programmed cell death;1.12695928243706e-07!GO:0015986;ATP synthesis coupled proton transport;1.28926320678159e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.28926320678159e-07!GO:0051246;regulation of protein metabolic process;1.32070492826982e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.32668851355154e-07!GO:0030029;actin filament-based process;1.34235463508316e-07!GO:0005773;vacuole;1.34235463508316e-07!GO:0019829;cation-transporting ATPase activity;1.50692677327479e-07!GO:0046034;ATP metabolic process;1.72868513540388e-07!GO:0019222;regulation of metabolic process;1.78607163354272e-07!GO:0032446;protein modification by small protein conjugation;1.79862670731817e-07!GO:0009260;ribonucleotide biosynthetic process;1.84256791779433e-07!GO:0003924;GTPase activity;1.90467931407261e-07!GO:0000139;Golgi membrane;2.12490148733197e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.63932014583807e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.63932014583807e-07!GO:0051301;cell division;3.42054369265558e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.25249414633846e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.25249414633846e-07!GO:0065002;intracellular protein transport across a membrane;4.26088125986927e-07!GO:0006260;DNA replication;4.37374103288416e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.65585735947526e-07!GO:0016567;protein ubiquitination;4.78251931581058e-07!GO:0005525;GTP binding;4.95271586933522e-07!GO:0005694;chromosome;5.03541723945852e-07!GO:0009055;electron carrier activity;5.57912795376955e-07!GO:0007264;small GTPase mediated signal transduction;5.58188603395379e-07!GO:0005788;endoplasmic reticulum lumen;5.58835331927495e-07!GO:0009060;aerobic respiration;6.32210269638073e-07!GO:0045786;negative regulation of progression through cell cycle;6.79046461926136e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.93614750635128e-07!GO:0017038;protein import;7.26581846354936e-07!GO:0046930;pore complex;7.28117499674755e-07!GO:0048475;coated membrane;8.22266335333317e-07!GO:0030117;membrane coat;8.22266335333317e-07!GO:0030120;vesicle coat;8.61959180300553e-07!GO:0030662;coated vesicle membrane;8.61959180300553e-07!GO:0016787;hydrolase activity;9.4940020522603e-07!GO:0005770;late endosome;9.83826612807512e-07!GO:0016568;chromatin modification;1.11201784837724e-06!GO:0007243;protein kinase cascade;1.33593793424411e-06!GO:0000151;ubiquitin ligase complex;1.44454164146622e-06!GO:0016044;membrane organization and biogenesis;1.58076177184082e-06!GO:0000323;lytic vacuole;1.59818582841963e-06!GO:0005764;lysosome;1.59818582841963e-06!GO:0006754;ATP biosynthetic process;1.63400250458952e-06!GO:0006753;nucleoside phosphate metabolic process;1.63400250458952e-06!GO:0007010;cytoskeleton organization and biogenesis;1.73894184856606e-06!GO:0003713;transcription coactivator activity;1.79548650590684e-06!GO:0045333;cellular respiration;2.29323637341346e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.5478023222715e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.5478023222715e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.5478023222715e-06!GO:0015630;microtubule cytoskeleton;2.5478023222715e-06!GO:0043038;amino acid activation;3.14338729098632e-06!GO:0006418;tRNA aminoacylation for protein translation;3.14338729098632e-06!GO:0043039;tRNA aminoacylation;3.14338729098632e-06!GO:0006399;tRNA metabolic process;3.34075646851548e-06!GO:0051028;mRNA transport;3.68794305171925e-06!GO:0005769;early endosome;3.84081750006452e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.53168283447351e-06!GO:0032561;guanyl ribonucleotide binding;4.97831075035496e-06!GO:0019001;guanyl nucleotide binding;4.97831075035496e-06!GO:0009117;nucleotide metabolic process;5.32391894537898e-06!GO:0043069;negative regulation of programmed cell death;5.46236312144088e-06!GO:0051188;cofactor biosynthetic process;5.51621721520437e-06!GO:0005813;centrosome;6.3261674101398e-06!GO:0016469;proton-transporting two-sector ATPase complex;6.94386947687535e-06!GO:0044440;endosomal part;7.34570802003526e-06!GO:0010008;endosome membrane;7.34570802003526e-06!GO:0003724;RNA helicase activity;7.34570802003526e-06!GO:0003697;single-stranded DNA binding;7.56535193068667e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.57784074266367e-06!GO:0043066;negative regulation of apoptosis;7.71939593999705e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.87714676020341e-06!GO:0030532;small nuclear ribonucleoprotein complex;8.07223096876742e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.29723971549804e-06!GO:0006613;cotranslational protein targeting to membrane;9.1827981814623e-06!GO:0006099;tricarboxylic acid cycle;1.02600084254494e-05!GO:0046356;acetyl-CoA catabolic process;1.02600084254494e-05!GO:0016740;transferase activity;1.03861462083139e-05!GO:0005798;Golgi-associated vesicle;1.05235249479182e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.08023034779533e-05!GO:0006916;anti-apoptosis;1.10080295509227e-05!GO:0043566;structure-specific DNA binding;1.11764141809406e-05!GO:0000245;spliceosome assembly;1.13924062192671e-05!GO:0044427;chromosomal part;1.20877618886224e-05!GO:0016564;transcription repressor activity;1.23282298661077e-05!GO:0003714;transcription corepressor activity;1.41565810804321e-05!GO:0008047;enzyme activator activity;1.52276626959238e-05!GO:0008092;cytoskeletal protein binding;1.58107699529132e-05!GO:0000087;M phase of mitotic cell cycle;1.72748715302499e-05!GO:0005667;transcription factor complex;1.78942947757876e-05!GO:0022403;cell cycle phase;1.9376088574701e-05!GO:0005815;microtubule organizing center;2.28877519738309e-05!GO:0007067;mitosis;2.37900937806026e-05!GO:0006084;acetyl-CoA metabolic process;2.39860029189567e-05!GO:0048471;perinuclear region of cytoplasm;2.55706847214864e-05!GO:0051170;nuclear import;2.56522291000116e-05!GO:0007005;mitochondrion organization and biogenesis;2.57418193188433e-05!GO:0004298;threonine endopeptidase activity;2.94456305591223e-05!GO:0045259;proton-transporting ATP synthase complex;3.74341905661237e-05!GO:0030867;rough endoplasmic reticulum membrane;4.01427311668151e-05!GO:0006606;protein import into nucleus;4.22027778237697e-05!GO:0051187;cofactor catabolic process;4.48424081561232e-05!GO:0005083;small GTPase regulator activity;5.10618130292231e-05!GO:0031323;regulation of cellular metabolic process;5.90345098258659e-05!GO:0006333;chromatin assembly or disassembly;6.15240049217815e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.1698665019633e-05!GO:0006752;group transfer coenzyme metabolic process;6.66130301769664e-05!GO:0016563;transcription activator activity;6.86698025011516e-05!GO:0007265;Ras protein signal transduction;6.9254866857574e-05!GO:0009108;coenzyme biosynthetic process;7.06730664167698e-05!GO:0006364;rRNA processing;7.4377776787179e-05!GO:0031324;negative regulation of cellular metabolic process;7.52012605121837e-05!GO:0030027;lamellipodium;8.91145023790087e-05!GO:0009109;coenzyme catabolic process;8.93235640745396e-05!GO:0005096;GTPase activator activity;9.65759162639016e-05!GO:0019867;outer membrane;0.000106404829650542!GO:0031968;organelle outer membrane;0.000106404829650542!GO:0016072;rRNA metabolic process;0.00010935869844831!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000117150307495394!GO:0001726;ruffle;0.00012432661427296!GO:0065009;regulation of a molecular function;0.000127804319735694!GO:0048522;positive regulation of cellular process;0.000129050214818475!GO:0043623;cellular protein complex assembly;0.000130934492921358!GO:0030133;transport vesicle;0.000148947512877348!GO:0000785;chromatin;0.000164077656194403!GO:0045454;cell redox homeostasis;0.000175275884743541!GO:0009892;negative regulation of metabolic process;0.000180423364841809!GO:0016853;isomerase activity;0.00018237210122288!GO:0008186;RNA-dependent ATPase activity;0.00018626160950268!GO:0006897;endocytosis;0.000230937626568385!GO:0010324;membrane invagination;0.000230937626568385!GO:0008654;phospholipid biosynthetic process;0.000243154997082062!GO:0006612;protein targeting to membrane;0.0002801259004264!GO:0005741;mitochondrial outer membrane;0.000280501230138747!GO:0033116;ER-Golgi intermediate compartment membrane;0.000305087736534544!GO:0051427;hormone receptor binding;0.00033557987869765!GO:0006350;transcription;0.000337852023956158!GO:0043021;ribonucleoprotein binding;0.000351877949961824!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000360352830835329!GO:0015399;primary active transmembrane transporter activity;0.000360352830835329!GO:0051789;response to protein stimulus;0.000360352830835329!GO:0006986;response to unfolded protein;0.000360352830835329!GO:0042802;identical protein binding;0.000386237685769026!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000444890141261797!GO:0006891;intra-Golgi vesicle-mediated transport;0.000446250899698079!GO:0005885;Arp2/3 protein complex;0.000453499738488823!GO:0030695;GTPase regulator activity;0.000465359874673856!GO:0008250;oligosaccharyl transferase complex;0.000502591646987223!GO:0006950;response to stress;0.000521173706278164!GO:0005905;coated pit;0.000521173706278164!GO:0016363;nuclear matrix;0.000543357577614496!GO:0004004;ATP-dependent RNA helicase activity;0.000561811050957258!GO:0045045;secretory pathway;0.000569269144580552!GO:0065004;protein-DNA complex assembly;0.000585991443292863!GO:0016197;endosome transport;0.000588430628667285!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000597249528904127!GO:0005048;signal sequence binding;0.000611494830525668!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000612570122005208!GO:0035257;nuclear hormone receptor binding;0.000619157478771092!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000632761502106884!GO:0007242;intracellular signaling cascade;0.000646323935485366!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000651189480675704!GO:0051168;nuclear export;0.000662966532061189!GO:0016779;nucleotidyltransferase activity;0.000672203076198168!GO:0010468;regulation of gene expression;0.000732250977710403!GO:0019843;rRNA binding;0.000790409495389346!GO:0051329;interphase of mitotic cell cycle;0.000835088903157818!GO:0051087;chaperone binding;0.000840180792512228!GO:0016859;cis-trans isomerase activity;0.000869240712123306!GO:0004576;oligosaccharyl transferase activity;0.000891497856742337!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00102671189862057!GO:0009966;regulation of signal transduction;0.00103982560384803!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00104358417077404!GO:0005791;rough endoplasmic reticulum;0.00105642715621241!GO:0009967;positive regulation of signal transduction;0.00110109968618977!GO:0003729;mRNA binding;0.00110109968618977!GO:0004674;protein serine/threonine kinase activity;0.00116487482386139!GO:0030134;ER to Golgi transport vesicle;0.00120582140982629!GO:0000279;M phase;0.00128459896961922!GO:0051920;peroxiredoxin activity;0.00140686453391339!GO:0008234;cysteine-type peptidase activity;0.00151558480986042!GO:0051325;interphase;0.00157757139475171!GO:0007266;Rho protein signal transduction;0.00161350997288468!GO:0003779;actin binding;0.0016214058712703!GO:0030127;COPII vesicle coat;0.00182527853163127!GO:0012507;ER to Golgi transport vesicle membrane;0.00182527853163127!GO:0031072;heat shock protein binding;0.00182527853163127!GO:0016481;negative regulation of transcription;0.00184902548002084!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00185059570503989!GO:0007050;cell cycle arrest;0.00188893073669949!GO:0008361;regulation of cell size;0.00199493051139921!GO:0043492;ATPase activity, coupled to movement of substances;0.00201159132255902!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00206522326311278!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00207647681342275!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00210720646980944!GO:0018196;peptidyl-asparagine modification;0.00210774384000434!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00210774384000434!GO:0005099;Ras GTPase activator activity;0.0021195509365744!GO:0000059;protein import into nucleus, docking;0.00225062365630439!GO:0006402;mRNA catabolic process;0.00225849764731831!GO:0030041;actin filament polymerization;0.00229546556251398!GO:0033673;negative regulation of kinase activity;0.00229546556251398!GO:0006469;negative regulation of protein kinase activity;0.00229546556251398!GO:0048500;signal recognition particle;0.00244533097549488!GO:0008139;nuclear localization sequence binding;0.00252525768414791!GO:0031901;early endosome membrane;0.00259486068744618!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00263546587798646!GO:0015980;energy derivation by oxidation of organic compounds;0.00273767286484857!GO:0030663;COPI coated vesicle membrane;0.00282411930448829!GO:0030126;COPI vesicle coat;0.00282411930448829!GO:0009165;nucleotide biosynthetic process;0.00282786330997843!GO:0001944;vasculature development;0.00282914657199559!GO:0016049;cell growth;0.00295788409550518!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00304912660857445!GO:0030659;cytoplasmic vesicle membrane;0.0030513426761884!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0033805932010509!GO:0050790;regulation of catalytic activity;0.00342406317481205!GO:0003690;double-stranded DNA binding;0.00345029943601308!GO:0030521;androgen receptor signaling pathway;0.00345332111270868!GO:0030658;transport vesicle membrane;0.00353900656873982!GO:0051348;negative regulation of transferase activity;0.00365931470720283!GO:0008632;apoptotic program;0.00383687051315077!GO:0008154;actin polymerization and/or depolymerization;0.00393113097921885!GO:0030833;regulation of actin filament polymerization;0.003949119351084!GO:0001558;regulation of cell growth;0.00400493172286354!GO:0003682;chromatin binding;0.00462105704303038!GO:0051128;regulation of cellular component organization and biogenesis;0.00467858742552846!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00475439170273629!GO:0045047;protein targeting to ER;0.00475439170273629!GO:0051252;regulation of RNA metabolic process;0.00510208520664689!GO:0031625;ubiquitin protein ligase binding;0.0051435965055425!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00528210021130781!GO:0005774;vacuolar membrane;0.00529024675374314!GO:0017166;vinculin binding;0.00531848521415219!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00545304371482366!GO:0006302;double-strand break repair;0.00553486703463074!GO:0048487;beta-tubulin binding;0.00568453889773431!GO:0030137;COPI-coated vesicle;0.00568842189842089!GO:0006892;post-Golgi vesicle-mediated transport;0.00585314422017715!GO:0001568;blood vessel development;0.00588854728395127!GO:0005819;spindle;0.00590440210000147!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00590440210000147!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00590440210000147!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00590440210000147!GO:0006383;transcription from RNA polymerase III promoter;0.00590440210000147!GO:0044433;cytoplasmic vesicle part;0.00604615995070226!GO:0016301;kinase activity;0.00607084399912205!GO:0005762;mitochondrial large ribosomal subunit;0.00611821881126023!GO:0000315;organellar large ribosomal subunit;0.00611821881126023!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00619535092380125!GO:0006414;translational elongation;0.00619884734735164!GO:0006509;membrane protein ectodomain proteolysis;0.00636471183079035!GO:0033619;membrane protein proteolysis;0.00636471183079035!GO:0032940;secretion by cell;0.00637186624660598!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00640123762701691!GO:0007034;vacuolar transport;0.00642833034305098!GO:0015992;proton transport;0.00644581652787188!GO:0035258;steroid hormone receptor binding;0.0065002768496068!GO:0030118;clathrin coat;0.00671569869564944!GO:0006650;glycerophospholipid metabolic process;0.00697650138562217!GO:0046489;phosphoinositide biosynthetic process;0.00699097483041329!GO:0006310;DNA recombination;0.00704741587943739!GO:0031902;late endosome membrane;0.00708998868239915!GO:0001952;regulation of cell-matrix adhesion;0.00711005668765738!GO:0006818;hydrogen transport;0.00711427888193173!GO:0030660;Golgi-associated vesicle membrane;0.00723504309826008!GO:0012506;vesicle membrane;0.00729040919645193!GO:0005637;nuclear inner membrane;0.00764851492276445!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0079631633676247!GO:0003684;damaged DNA binding;0.00814983251830781!GO:0008312;7S RNA binding;0.00867779376712044!GO:0006289;nucleotide-excision repair;0.00867779376712044!GO:0006261;DNA-dependent DNA replication;0.00905311738593759!GO:0007162;negative regulation of cell adhesion;0.0097726844579378!GO:0000209;protein polyubiquitination;0.00988349481054685!GO:0030384;phosphoinositide metabolic process;0.0100984021951645!GO:0003678;DNA helicase activity;0.0101004187274967!GO:0046474;glycerophospholipid biosynthetic process;0.0101972092773005!GO:0003899;DNA-directed RNA polymerase activity;0.0102445789484494!GO:0006352;transcription initiation;0.0102576121060447!GO:0032774;RNA biosynthetic process;0.0104399646353338!GO:0006351;transcription, DNA-dependent;0.0105927664659669!GO:0015631;tubulin binding;0.0108110072543488!GO:0044262;cellular carbohydrate metabolic process;0.0108265363858439!GO:0006401;RNA catabolic process;0.0113110231424171!GO:0006643;membrane lipid metabolic process;0.0114297221574512!GO:0000082;G1/S transition of mitotic cell cycle;0.0114696397434085!GO:0048518;positive regulation of biological process;0.0115637390818813!GO:0051270;regulation of cell motility;0.011671002802586!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0117003382024634!GO:0043681;protein import into mitochondrion;0.0117962981820481!GO:0030032;lamellipodium biogenesis;0.0118552873409286!GO:0007040;lysosome organization and biogenesis;0.0118552873409286!GO:0005100;Rho GTPase activator activity;0.0122248176666698!GO:0044437;vacuolar part;0.0122866920103295!GO:0004177;aminopeptidase activity;0.012369501301552!GO:0006626;protein targeting to mitochondrion;0.0124841366589179!GO:0046467;membrane lipid biosynthetic process;0.0125793640357227!GO:0030518;steroid hormone receptor signaling pathway;0.013028279033102!GO:0007033;vacuole organization and biogenesis;0.0130304306795157!GO:0045449;regulation of transcription;0.0132305919155024!GO:0022406;membrane docking;0.0133638991207306!GO:0048278;vesicle docking;0.0133638991207306!GO:0043488;regulation of mRNA stability;0.0134480183786161!GO:0043487;regulation of RNA stability;0.0134480183786161!GO:0030880;RNA polymerase complex;0.0141690636130196!GO:0005938;cell cortex;0.0146070277834148!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.01463584120014!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.01481719532912!GO:0033043;regulation of organelle organization and biogenesis;0.01481719532912!GO:0016126;sterol biosynthetic process;0.0149341395338868!GO:0005869;dynactin complex;0.0150997936000476!GO:0005684;U2-dependent spliceosome;0.0151333324477587!GO:0050681;androgen receptor binding;0.0154529962625859!GO:0016251;general RNA polymerase II transcription factor activity;0.0154867722379102!GO:0007006;mitochondrial membrane organization and biogenesis;0.0158237572001245!GO:0022408;negative regulation of cell-cell adhesion;0.0159436285512244!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0161354794582853!GO:0040011;locomotion;0.0162179590643991!GO:0043086;negative regulation of catalytic activity;0.0165758039941604!GO:0003711;transcription elongation regulator activity;0.0165758039941604!GO:0005765;lysosomal membrane;0.0171155114721197!GO:0045893;positive regulation of transcription, DNA-dependent;0.0171679818139406!GO:0003756;protein disulfide isomerase activity;0.0172682726958721!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0172682726958721!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0172752913273572!GO:0048514;blood vessel morphogenesis;0.0172988820181041!GO:0007041;lysosomal transport;0.0173307146543525!GO:0000314;organellar small ribosomal subunit;0.0176557297483589!GO:0005763;mitochondrial small ribosomal subunit;0.0176557297483589!GO:0048468;cell development;0.0176858239504019!GO:0022415;viral reproductive process;0.0177918688873042!GO:0030119;AP-type membrane coat adaptor complex;0.0178025970134417!GO:0031418;L-ascorbic acid binding;0.017859328985415!GO:0050811;GABA receptor binding;0.0183019248506966!GO:0033093;Weibel-Palade body;0.0183019248506966!GO:0035035;histone acetyltransferase binding;0.0183621049384737!GO:0000118;histone deacetylase complex;0.0186529071654354!GO:0006611;protein export from nucleus;0.0187890960679418!GO:0040012;regulation of locomotion;0.0193739051257137!GO:0005832;chaperonin-containing T-complex;0.0195164641520509!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0196603220768304!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0205175559881083!GO:0006839;mitochondrial transport;0.0205488466130612!GO:0006338;chromatin remodeling;0.0206569012516132!GO:0047485;protein N-terminus binding;0.0212356932880673!GO:0016601;Rac protein signal transduction;0.0213184844257863!GO:0000339;RNA cap binding;0.0214727420202885!GO:0006497;protein amino acid lipidation;0.0216788672148021!GO:0006904;vesicle docking during exocytosis;0.0219122820033771!GO:0006405;RNA export from nucleus;0.0219122820033771!GO:0005874;microtubule;0.022328267161103!GO:0051336;regulation of hydrolase activity;0.0223608812967964!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0226361964305233!GO:0000428;DNA-directed RNA polymerase complex;0.0226361964305233!GO:0000075;cell cycle checkpoint;0.0226834487231261!GO:0004197;cysteine-type endopeptidase activity;0.0227071879106936!GO:0043022;ribosome binding;0.0228473400883895!GO:0032200;telomere organization and biogenesis;0.0228726308907998!GO:0000723;telomere maintenance;0.0228726308907998!GO:0000287;magnesium ion binding;0.0233075830076418!GO:0007030;Golgi organization and biogenesis;0.0233075830076418!GO:0006516;glycoprotein catabolic process;0.0241998849416292!GO:0043087;regulation of GTPase activity;0.0242168019835107!GO:0016491;oxidoreductase activity;0.0242168019835107!GO:0001525;angiogenesis;0.0242320379499162!GO:0006376;mRNA splice site selection;0.0244388236075278!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0244388236075278!GO:0030132;clathrin coat of coated pit;0.025048655130199!GO:0001953;negative regulation of cell-matrix adhesion;0.0250532089667453!GO:0000776;kinetochore;0.0250906382716468!GO:0022890;inorganic cation transmembrane transporter activity;0.0251213618231829!GO:0006695;cholesterol biosynthetic process;0.0258873659486405!GO:0001666;response to hypoxia;0.0259444733101603!GO:0000049;tRNA binding;0.0260535911372814!GO:0045892;negative regulation of transcription, DNA-dependent;0.0265176094285432!GO:0006468;protein amino acid phosphorylation;0.0265584486322458!GO:0006417;regulation of translation;0.0268718817851257!GO:0030131;clathrin adaptor complex;0.0268718817851257!GO:0031543;peptidyl-proline dioxygenase activity;0.0278354582663716!GO:0045941;positive regulation of transcription;0.0278354582663716!GO:0005669;transcription factor TFIID complex;0.0282446942682545!GO:0051098;regulation of binding;0.0283076001735865!GO:0006644;phospholipid metabolic process;0.0286321561695096!GO:0051059;NF-kappaB binding;0.0287048560270372!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0287048560270372!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0287048560270372!GO:0008022;protein C-terminus binding;0.0288217417272543!GO:0008094;DNA-dependent ATPase activity;0.0295026223699267!GO:0033130;acetylcholine receptor binding;0.029616094889995!GO:0043065;positive regulation of apoptosis;0.0299530286107968!GO:0031497;chromatin assembly;0.0313855479811945!GO:0051101;regulation of DNA binding;0.031477446895621!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0316761784735814!GO:0006740;NADPH regeneration;0.0317840600098816!GO:0006098;pentose-phosphate shunt;0.0317840600098816!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0317840600098816!GO:0006334;nucleosome assembly;0.0320034394935922!GO:0006595;polyamine metabolic process;0.0323919847786074!GO:0006672;ceramide metabolic process;0.0326292982187813!GO:0008286;insulin receptor signaling pathway;0.0327129211314116!GO:0015036;disulfide oxidoreductase activity;0.0327208930951057!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0329383985895579!GO:0008320;protein transmembrane transporter activity;0.0332436238486884!GO:0042585;germinal vesicle;0.0335753580858748!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0336486643489327!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0336486643489327!GO:0043433;negative regulation of transcription factor activity;0.0338964687575933!GO:0022407;regulation of cell-cell adhesion;0.0342339114533096!GO:0040008;regulation of growth;0.0345373875707354!GO:0008180;signalosome;0.0356052146993929!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0356306514615097!GO:0032906;transforming growth factor-beta2 production;0.0358877507208424!GO:0032909;regulation of transforming growth factor-beta2 production;0.0358877507208424!GO:0043068;positive regulation of programmed cell death;0.0361552614808698!GO:0032535;regulation of cellular component size;0.036525408814013!GO:0019783;small conjugating protein-specific protease activity;0.0366817046813871!GO:0019904;protein domain specific binding;0.0375170774993555!GO:0007004;telomere maintenance via telomerase;0.0376142243650883!GO:0016272;prefoldin complex;0.0385776147871122!GO:0030155;regulation of cell adhesion;0.0391354284792329!GO:0004843;ubiquitin-specific protease activity;0.0391354284792329!GO:0006091;generation of precursor metabolites and energy;0.0395446636753287!GO:0007569;cell aging;0.0400515797754826!GO:0005784;translocon complex;0.0408284725284496!GO:0004563;beta-N-acetylhexosaminidase activity;0.0412225672935841!GO:0007021;tubulin folding;0.0412225672935841!GO:0032984;macromolecular complex disassembly;0.0413302254231386!GO:0006607;NLS-bearing substrate import into nucleus;0.0420257587407707!GO:0019902;phosphatase binding;0.0421002650732849!GO:0030100;regulation of endocytosis;0.0421029479929732!GO:0000781;chromosome, telomeric region;0.042564766636461!GO:0007052;mitotic spindle organization and biogenesis;0.042669777135741!GO:0033559;unsaturated fatty acid metabolic process;0.0445248336687749!GO:0006636;unsaturated fatty acid biosynthetic process;0.0445248336687749!GO:0046519;sphingoid metabolic process;0.0449611034978846!GO:0048660;regulation of smooth muscle cell proliferation;0.0449992250173957!GO:0008270;zinc ion binding;0.0452496393145203!GO:0042158;lipoprotein biosynthetic process;0.0465317290976422!GO:0003702;RNA polymerase II transcription factor activity;0.0465317290976422!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0465555190655278!GO:0006984;ER-nuclear signaling pathway;0.0465588116819349!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0468636604010387!GO:0006919;caspase activation;0.0468973849826221!GO:0030832;regulation of actin filament length;0.0474417254929145!GO:0044452;nucleolar part;0.0486719998596681!GO:0030176;integral to endoplasmic reticulum membrane;0.0489107745232496!GO:0030984;kininogen binding;0.048957203836448!GO:0004213;cathepsin B activity;0.048957203836448!GO:0030522;intracellular receptor-mediated signaling pathway;0.048957203836448!GO:0043407;negative regulation of MAP kinase activity;0.0490517483949579!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0491023783048058!GO:0051052;regulation of DNA metabolic process;0.0492197405728783!GO:0030031;cell projection biogenesis;0.0493939023780714!GO:0007051;spindle organization and biogenesis;0.0498421457606092!GO:0051338;regulation of transferase activity;0.0499246787968192
 |sample_id=11393
 |sample_note=
@@ Line 76: / Line 105: @@
 |sample_tissue=capillary
 |top_motifs=FOX{I1,J2}:2.28751906807;PAX6:1.92786867702;SOX5:1.84327032791;SOX{8,9,10}:1.8267403761;SOX2:1.75981887595;HBP1_HMGB_SSRP1_UBTF:1.72016221974;RXR{A,B,G}:1.69528390452;NFATC1..3:1.5299089024;IKZF2:1.23465843157;ELF1,2,4:1.18878216371;LEF1_TCF7_TCF7L1,2:1.11969382711;SREBF1,2:1.06752675013;SPZ1:1.04175074943;ADNP_IRX_SIX_ZHX:0.994167321958;ZFP161:0.95525459101;STAT1,3:0.907753442499;RBPJ:0.870535309154;PAX4:0.86512429418;AR:0.86509395345;ETS1,2:0.835039327354;GATA6:0.833861483327;FOXN1:0.805543031387;TLX1..3_NFIC{dimer}:0.771715135737;HAND1,2:0.76427531676;ALX1:0.745710105586;SOX17:0.734699982125;IKZF1:0.725512042663;bHLH_family:0.699830175749;LHX3,4:0.679010789612;FOX{D1,D2}:0.678107917209;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.654671339366;TP53:0.646090001881;ARID5B:0.645349404895;SPIB:0.640989741314;TEF:0.625948191101;MED-1{core}:0.622405547845;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.614474644672;HMGA1,2:0.602337918993;NANOG:0.563170195648;BPTF:0.559026733182;PAX3,7:0.542017988503;TFAP2{A,C}:0.535261410236;TEAD1:0.51557801799;HIF1A:0.507036942464;PRDM1:0.505609306189;FOXA2:0.502563718131;POU3F1..4:0.479826180991;CDC5L:0.460496011961;PAX1,9:0.452435196618;TFAP4:0.450617995905;TFDP1:0.442971831758;GFI1B:0.43396454095;MTE{core}:0.422591011592;MYOD1:0.422467081898;EGR1..3:0.411214056781;MAZ:0.410281129782;PITX1..3:0.381413426905;NRF1:0.379794383707;SMAD1..7,9:0.369745258509;FOXQ1:0.362654929209;POU1F1:0.351981992175;STAT2,4,6:0.351261086086;GZF1:0.348826125637;SP1:0.323995115232;PAX5:0.295959508974;XCPE1{core}:0.275914198059;FOXO1,3,4:0.244375575029;TFAP2B:0.242272530326;ATF2:0.237699639397;TAL1_TCF{3,4,12}:0.230127701963;NR3C1:0.219220891736;ZNF143:0.213410411994;CUX2:0.189908668043;TGIF1:0.181072220529;GATA4:0.165568128895;MYB:0.139866288253;YY1:0.128679367945;NFY{A,B,C}:0.122167479499;T:0.121759431583;PBX1:0.118411139281;FOXD3:0.111024999079;PAX2:0.109944882392;PAX8:0.10203393874;NHLH1,2:0.101864313775;GCM1,2:0.0921091180738;SPI1:0.0894161956704;TLX2:0.0654066009396;HOXA9_MEIS1:0.0642832430038;ZBTB6:0.0618654230651;NFKB1_REL_RELA:0.0321079859193;HIC1:0.0235800792316;IRF1,2:0.0214171313383;EVI1:0.0203851579434;E2F1..5:0.00941154562971;EN1,2:0.00901546881738;SRF:-0.000206495698527;MZF1:-0.0133231050928;NFE2L2:-0.0184326942371;ZNF238:-0.0197584658572;NFE2:-0.022582813922;NKX2-3_NKX2-5:-0.0247607969831;FOSL2:-0.0426056428274;XBP1:-0.0433253072246;BACH2:-0.0567380896156;RORA:-0.0579111328258;MEF2{A,B,C,D}:-0.0614874931605;GTF2I:-0.0722469701928;MYFfamily:-0.0810341246924;FOS_FOS{B,L1}_JUN{B,D}:-0.130813566022;FOX{F1,F2,J1}:-0.14085494561;GFI1:-0.148638289801;PDX1:-0.151252560646;ATF6:-0.156580743492;DMAP1_NCOR{1,2}_SMARC:-0.159555381593;PATZ1:-0.164160324413;HNF1A:-0.166181869893;CREB1:-0.170396543425;LMO2:-0.176195241506;NFIX:-0.182138220421;REST:-0.187470334068;AHR_ARNT_ARNT2:-0.18982047013;ZIC1..3:-0.201038280626;ZBTB16:-0.204289555159;CRX:-0.207854293035;NKX2-2,8:-0.236989104676;HNF4A_NR2F1,2:-0.249077530268;UFEwm:-0.266282557848;NKX3-2:-0.280490350562;IRF7:-0.280629019844;ATF4:-0.287401004003;FOXP1:-0.306311807565;ZNF148:-0.31529124443;HLF:-0.31945635154;NANOG{mouse}:-0.324609896988;NR5A1,2:-0.331270476824;POU6F1:-0.343360555189;FOXL1:-0.362820926196;NKX2-1,4:-0.364336474353;ONECUT1,2:-0.369579510271;FOXM1:-0.382361207068;EP300:-0.384594288797;PRRX1,2:-0.406929183339;RFX1:-0.42505487194;JUN:-0.432208922641;ESRRA:-0.441714424303;HSF1,2:-0.443366771091;TBP:-0.449443834705;ELK1,4_GABP{A,B1}:-0.465162968768;OCT4_SOX2{dimer}:-0.473768547094;CEBPA,B_DDIT3:-0.483274249842;HMX1:-0.487300028321;MYBL2:-0.49210776048;RFX2..5_RFXANK_RFXAP:-0.525551437044;GTF2A1,2:-0.532543457598;FOXP3:-0.548059901072;HOX{A5,B5}:-0.591998573675;ZNF384:-0.594929941248;KLF4:-0.608995587796;CDX1,2,4:-0.615223422183;ATF5_CREB3:-0.626421704572;EBF1:-0.630246296261;STAT5{A,B}:-0.638453783136;ALX4:-0.639379458027;BREu{core}:-0.643345642319;MAFB:-0.645709040844;PPARG:-0.661895178914;NR6A1:-0.668161962863;SNAI1..3:-0.679453160087;RREB1:-0.680074346015;HES1:-0.705243367401;NKX3-1:-0.736739821264;RUNX1..3:-0.741112018779;TBX4,5:-0.743274617465;TOPORS:-0.754445048516;ZEB1:-0.768545323689;NFE2L1:-0.777939354499;HOX{A6,A7,B6,B7}:-0.788774832523;AIRE:-0.817479290224;GLI1..3:-0.86040006327;TFCP2:-0.882784228231;MTF1:-0.893848074979;RXRA_VDR{dimer}:-0.93068631635;POU5F1:-0.998640059902;NR1H4:-1.00440485273;DBP:-1.0129761465;NFIL3:-1.15226203899;HOX{A4,D4}:-1.20742182423;ZNF423:-1.23624793468;ESR1:-1.27856648204;NKX6-1,2:-1.30016752483;VSX1,2:-1.44496138797;POU2F1..3:-1.48385090819
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11393-118C7;search_select_hide=table117:FF:11393-118C7
 }}

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FF:11393-118C7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:57, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0