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(Created page with "{{f5samples |id=FF:11413-118E9 |name=Endothelial Cells - Artery, donor3 |sample_id=11413 |rna_tube_id=118E9 |rna_box=118 |rna_position=E9 |sample_cell_lot=N/A |sample_...")
 
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{{f5samples
{{f5samples
|id=FF:11413-118E9
|DRA_sample_Accession=CAGE@SAMD00005046
|name=Endothelial Cells - Artery, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005046
|sample_id=11413
|accession_numbers=CAGE;DRX008222;DRR009094;DRZ000519;DRZ001904;DRZ011869;DRZ013254
|rna_tube_id=118E9
|accession_numbers_RNASeq=sRNA-Seq;DRX037050;DRR041416;DRZ007058
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
|rna_position=E9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1596.00000
|rna_catalog_number=CA300-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=53 years old adult
|sample_tissue=artery
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=53
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=blood vessel endothelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=1.00000
|sample_note=
|profile_hcage=CNhs12023,LSID837,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10004,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000071,CL:0000076,CL:0000115,CL:0000144,CL:0000213,CL:0000215,CL:0000220,CL:0000222,CL:0000255,CL:0000548,CL:0002078,CL:0002139,CL:0002321,CL:0002371,CL:0002546,CL:1000413
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000487,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001062,UBERON:0001637,UBERON:0001917,UBERON:0001981,UBERON:0001986,UBERON:0002049,UBERON:0002050,UBERON:0002532,UBERON:0003081,UBERON:0003509,UBERON:0003914,UBERON:0004111,UBERON:0004120,UBERON:0004535,UBERON:0004537,UBERON:0004572,UBERON:0004638,UBERON:0004700,UBERON:0004852,UBERON:0004872,UBERON:0005423,UBERON:0006914,UBERON:0006965,UBERON:0007500,UBERON:0007798
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000001
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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Line 67: Line 43:
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|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GTGGCC.11413
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|name=Endothelial Cells - Artery, donor3
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|rna_box=118
|rna_catalog_number=CA300-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1596
|rna_od260/230=
|rna_od260/280=
|rna_position=E9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.18E+11
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.GTGGCC
|sample_age=53
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=blood vessel endothelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=53 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.86431139721933e-249!GO:0043226;organelle;1.89220306647816e-198!GO:0043229;intracellular organelle;3.5239281357224e-198!GO:0005737;cytoplasm;2.10638076752237e-194!GO:0043231;intracellular membrane-bound organelle;3.64360354238479e-192!GO:0043227;membrane-bound organelle;8.64725947636511e-192!GO:0044422;organelle part;5.76588099671239e-149!GO:0044446;intracellular organelle part;1.33067412046097e-147!GO:0044444;cytoplasmic part;1.12759465041465e-137!GO:0032991;macromolecular complex;5.81392335060663e-100!GO:0044238;primary metabolic process;8.08412556103363e-91!GO:0044237;cellular metabolic process;2.43858249162294e-90!GO:0030529;ribonucleoprotein complex;9.1703962232307e-89!GO:0005515;protein binding;1.15583788726858e-85!GO:0043170;macromolecule metabolic process;7.34823012170241e-84!GO:0005634;nucleus;2.16026130343019e-77!GO:0043233;organelle lumen;4.49644696789991e-75!GO:0031974;membrane-enclosed lumen;4.49644696789991e-75!GO:0044428;nuclear part;2.54504023952082e-73!GO:0003723;RNA binding;5.59086360551178e-72!GO:0005739;mitochondrion;7.8865883750854e-71!GO:0019538;protein metabolic process;1.98322384157749e-56!GO:0005840;ribosome;3.01813414705165e-55!GO:0006412;translation;2.73952963504507e-53!GO:0031090;organelle membrane;1.14121361274407e-52!GO:0016043;cellular component organization and biogenesis;1.04125348133972e-51!GO:0043234;protein complex;6.04758549100693e-50!GO:0044267;cellular protein metabolic process;2.33704496053598e-49!GO:0044260;cellular macromolecule metabolic process;2.9114669048823e-49!GO:0003735;structural constituent of ribosome;1.03505506609626e-48!GO:0044429;mitochondrial part;3.86207261327609e-48!GO:0006396;RNA processing;4.17821759900134e-47!GO:0043283;biopolymer metabolic process;6.75674620863678e-46!GO:0031981;nuclear lumen;9.93147864782553e-46!GO:0031967;organelle envelope;7.03306669351658e-45!GO:0031975;envelope;1.82855486032531e-44!GO:0005829;cytosol;7.97481451161733e-43!GO:0015031;protein transport;2.03336029123794e-42!GO:0033036;macromolecule localization;2.51555684908677e-41!GO:0033279;ribosomal subunit;3.04617865421996e-41!GO:0009058;biosynthetic process;9.61376042997063e-41!GO:0044249;cellular biosynthetic process;1.06737315207654e-40!GO:0009059;macromolecule biosynthetic process;2.26911114382371e-40!GO:0043228;non-membrane-bound organelle;1.59889905041063e-39!GO:0043232;intracellular non-membrane-bound organelle;1.59889905041063e-39!GO:0010467;gene expression;2.74103240836712e-39!GO:0045184;establishment of protein localization;1.54106101925452e-38!GO:0008104;protein localization;2.6652356251539e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.55390512683784e-38!GO:0006996;organelle organization and biogenesis;4.63281248389449e-37!GO:0046907;intracellular transport;1.98030916498439e-35!GO:0016071;mRNA metabolic process;1.48003872274517e-34!GO:0065003;macromolecular complex assembly;2.58528829945415e-34!GO:0008380;RNA splicing;1.81390075644515e-32!GO:0005740;mitochondrial envelope;1.88382604866563e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.14287765583295e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.47283590823743e-31!GO:0031966;mitochondrial membrane;1.13193851982013e-30!GO:0022607;cellular component assembly;2.1956754974851e-30!GO:0006886;intracellular protein transport;5.54368669960659e-30!GO:0006397;mRNA processing;9.05512513555222e-30!GO:0019866;organelle inner membrane;3.82298237260084e-28!GO:0006259;DNA metabolic process;3.96686817000745e-28!GO:0000166;nucleotide binding;1.35351638238658e-27!GO:0005654;nucleoplasm;1.3609010681733e-26!GO:0005743;mitochondrial inner membrane;3.77092486393083e-26!GO:0007049;cell cycle;2.24978809881664e-25!GO:0044445;cytosolic part;5.90775707387663e-25!GO:0005681;spliceosome;1.60728811582343e-24!GO:0051649;establishment of cellular localization;1.03635710688096e-23!GO:0051641;cellular localization;2.417932005871e-23!GO:0016462;pyrophosphatase activity;4.1049944958441e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.89491181859223e-22!GO:0006119;oxidative phosphorylation;5.01002140244383e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;6.28482985222696e-22!GO:0017111;nucleoside-triphosphatase activity;1.62156053896875e-21!GO:0005730;nucleolus;2.00085285718541e-21!GO:0015934;large ribosomal subunit;2.32083735585306e-21!GO:0044451;nucleoplasm part;3.14568396862397e-21!GO:0012505;endomembrane system;4.09156407540416e-21!GO:0015935;small ribosomal subunit;5.54502490769677e-21!GO:0044455;mitochondrial membrane part;2.04726054583617e-20!GO:0003676;nucleic acid binding;2.22042534579239e-20!GO:0032553;ribonucleotide binding;3.55656330907499e-20!GO:0032555;purine ribonucleotide binding;3.55656330907499e-20!GO:0017076;purine nucleotide binding;5.10544162618135e-20!GO:0031980;mitochondrial lumen;9.10551543852495e-20!GO:0005759;mitochondrial matrix;9.10551543852495e-20!GO:0022402;cell cycle process;1.34057936703472e-19!GO:0016874;ligase activity;4.09484264446084e-19!GO:0006457;protein folding;1.1264033293905e-18!GO:0008134;transcription factor binding;9.35766373739431e-18!GO:0000278;mitotic cell cycle;1.41515948971483e-17!GO:0005746;mitochondrial respiratory chain;2.41669082474159e-17!GO:0005783;endoplasmic reticulum;2.48908878042459e-17!GO:0022618;protein-RNA complex assembly;3.95047135185894e-17!GO:0006512;ubiquitin cycle;8.08923129333184e-17!GO:0044265;cellular macromolecule catabolic process;1.53415958647465e-16!GO:0043412;biopolymer modification;1.65644954801944e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.72424280078172e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.9240141950606e-16!GO:0005794;Golgi apparatus;3.01975534880862e-16!GO:0005524;ATP binding;3.42422239168251e-16!GO:0032559;adenyl ribonucleotide binding;3.69768136204797e-16!GO:0048770;pigment granule;6.01331140386545e-16!GO:0042470;melanosome;6.01331140386545e-16!GO:0006605;protein targeting;6.4927088931372e-16!GO:0030554;adenyl nucleotide binding;7.37406768947742e-16!GO:0043285;biopolymer catabolic process;1.06382299919308e-15!GO:0042254;ribosome biogenesis and assembly;1.79498538538808e-15!GO:0051186;cofactor metabolic process;2.14392057981262e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.33825851041352e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.25587238108366e-15!GO:0009057;macromolecule catabolic process;4.28525381528234e-15!GO:0019941;modification-dependent protein catabolic process;4.28525381528234e-15!GO:0043632;modification-dependent macromolecule catabolic process;4.28525381528234e-15!GO:0006464;protein modification process;5.74015767045066e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.74015767045066e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.07790719091953e-15!GO:0003954;NADH dehydrogenase activity;7.07790719091953e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.07790719091953e-15!GO:0044257;cellular protein catabolic process;7.24258517368226e-15!GO:0006511;ubiquitin-dependent protein catabolic process;7.2438199035594e-15!GO:0016070;RNA metabolic process;8.10873242036308e-15!GO:0016192;vesicle-mediated transport;1.91573513697636e-14!GO:0005761;mitochondrial ribosome;1.91689431002815e-14!GO:0000313;organellar ribosome;1.91689431002815e-14!GO:0006974;response to DNA damage stimulus;1.93128803265849e-14!GO:0044432;endoplasmic reticulum part;3.0308709653211e-14!GO:0008135;translation factor activity, nucleic acid binding;5.50079257711539e-14!GO:0005694;chromosome;6.46729320470694e-14!GO:0044248;cellular catabolic process;7.70441455403415e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.39068905046702e-13!GO:0000375;RNA splicing, via transesterification reactions;1.39068905046702e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.39068905046702e-13!GO:0030163;protein catabolic process;1.69331287568522e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.76794475940665e-13!GO:0005635;nuclear envelope;2.90499999720964e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.96062832686285e-13!GO:0042773;ATP synthesis coupled electron transport;3.96062832686285e-13!GO:0044427;chromosomal part;4.10878597067669e-13!GO:0051082;unfolded protein binding;4.3047496815129e-13!GO:0051276;chromosome organization and biogenesis;5.08664491436934e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.21738348619347e-13!GO:0045271;respiratory chain complex I;5.21738348619347e-13!GO:0005747;mitochondrial respiratory chain complex I;5.21738348619347e-13!GO:0043687;post-translational protein modification;9.93290373832964e-13!GO:0048193;Golgi vesicle transport;1.00401393890786e-12!GO:0031965;nuclear membrane;1.2143704758696e-12!GO:0022403;cell cycle phase;1.35344567466626e-12!GO:0000087;M phase of mitotic cell cycle;1.60488416851861e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.68764975592173e-12!GO:0007067;mitosis;2.01267121544795e-12!GO:0044453;nuclear membrane part;2.06678980172723e-12!GO:0042623;ATPase activity, coupled;3.51415345280798e-12!GO:0003712;transcription cofactor activity;3.56830574455861e-12!GO:0051726;regulation of cell cycle;6.8265717516364e-12!GO:0051301;cell division;6.9969368622565e-12!GO:0016887;ATPase activity;7.65847185290413e-12!GO:0012501;programmed cell death;8.87972588506973e-12!GO:0006732;coenzyme metabolic process;9.58393663537122e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;9.84524315679232e-12!GO:0006260;DNA replication;1.00842351822408e-11!GO:0006915;apoptosis;1.02065057336892e-11!GO:0000074;regulation of progression through cell cycle;1.03360034071228e-11!GO:0003743;translation initiation factor activity;1.06012993483059e-11!GO:0006913;nucleocytoplasmic transport;1.58342203831342e-11!GO:0006281;DNA repair;2.30732379477092e-11!GO:0009055;electron carrier activity;2.70851794303697e-11!GO:0006323;DNA packaging;4.32677234539084e-11!GO:0051169;nuclear transport;4.60335042735741e-11!GO:0016604;nuclear body;4.93345236338005e-11!GO:0006461;protein complex assembly;7.95803567977375e-11!GO:0006413;translational initiation;8.74189426420447e-11!GO:0006399;tRNA metabolic process;9.56860689205932e-11!GO:0009719;response to endogenous stimulus;9.60801502165177e-11!GO:0009259;ribonucleotide metabolic process;1.16714439018208e-10!GO:0005793;ER-Golgi intermediate compartment;1.47785524208521e-10!GO:0006364;rRNA processing;1.58952644202032e-10!GO:0006163;purine nucleotide metabolic process;1.83391491430588e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.59748488805234e-10!GO:0008219;cell death;2.65121232758303e-10!GO:0016265;death;2.65121232758303e-10!GO:0008639;small protein conjugating enzyme activity;3.37800586149343e-10!GO:0016072;rRNA metabolic process;4.60373219742288e-10!GO:0005643;nuclear pore;4.84515587745349e-10!GO:0009150;purine ribonucleotide metabolic process;5.72786000106553e-10!GO:0004842;ubiquitin-protein ligase activity;6.62738779632595e-10!GO:0005789;endoplasmic reticulum membrane;7.39415188760418e-10!GO:0008565;protein transporter activity;9.32966683211382e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.04989092367051e-09!GO:0050794;regulation of cellular process;1.18992244182855e-09!GO:0000785;chromatin;1.19622764283559e-09!GO:0048523;negative regulation of cellular process;1.23769682455378e-09!GO:0000279;M phase;1.55808464559681e-09!GO:0019787;small conjugating protein ligase activity;1.81496750155163e-09!GO:0004386;helicase activity;1.83071227871963e-09!GO:0006446;regulation of translational initiation;1.86777416272682e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.97358994864481e-09!GO:0006164;purine nucleotide biosynthetic process;2.01594551598384e-09!GO:0017038;protein import;2.79428685385783e-09!GO:0065002;intracellular protein transport across a membrane;2.79443870701783e-09!GO:0009260;ribonucleotide biosynthetic process;3.31865791508303e-09!GO:0008026;ATP-dependent helicase activity;4.1276973430511e-09!GO:0065004;protein-DNA complex assembly;4.33560428423618e-09!GO:0006333;chromatin assembly or disassembly;4.66989088011466e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.86565173957558e-09!GO:0009152;purine ribonucleotide biosynthetic process;6.13703480928003e-09!GO:0046930;pore complex;8.69800979187893e-09!GO:0009199;ribonucleoside triphosphate metabolic process;9.37399001802659e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.22382582924304e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.22382582924304e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.22382582924304e-08!GO:0006366;transcription from RNA polymerase II promoter;1.35696411015962e-08!GO:0009141;nucleoside triphosphate metabolic process;1.35918380294791e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.65444826548895e-08!GO:0016881;acid-amino acid ligase activity;1.67905968411283e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.91458886004103e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.91458886004103e-08!GO:0009060;aerobic respiration;2.04945077733232e-08!GO:0006793;phosphorus metabolic process;2.27695913510054e-08!GO:0006796;phosphate metabolic process;2.27695913510054e-08!GO:0009056;catabolic process;2.5596101783819e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.73912614242159e-08!GO:0016607;nuclear speck;2.78986415516885e-08!GO:0015986;ATP synthesis coupled proton transport;2.90215144963947e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.90215144963947e-08!GO:0051188;cofactor biosynthetic process;3.01850333158419e-08!GO:0043038;amino acid activation;3.56435348484461e-08!GO:0006418;tRNA aminoacylation for protein translation;3.56435348484461e-08!GO:0043039;tRNA aminoacylation;3.56435348484461e-08!GO:0048519;negative regulation of biological process;4.45397549106322e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.81870847443188e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.81870847443188e-08!GO:0051246;regulation of protein metabolic process;7.03076810517673e-08!GO:0006334;nucleosome assembly;7.09984090795074e-08!GO:0046034;ATP metabolic process;7.3773117390325e-08!GO:0050657;nucleic acid transport;8.86192114866254e-08!GO:0051236;establishment of RNA localization;8.86192114866254e-08!GO:0050658;RNA transport;8.86192114866254e-08!GO:0006403;RNA localization;8.86192114866254e-08!GO:0016779;nucleotidyltransferase activity;9.16407262042292e-08!GO:0045333;cellular respiration;1.05248656806777e-07!GO:0016740;transferase activity;1.08019420489268e-07!GO:0016310;phosphorylation;1.23130282184179e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.39833682553552e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.39833682553552e-07!GO:0003924;GTPase activity;1.86755208137401e-07!GO:0042981;regulation of apoptosis;1.98717853308016e-07!GO:0015630;microtubule cytoskeleton;1.9901490867826e-07!GO:0043067;regulation of programmed cell death;2.40328246599075e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.48373997161366e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.61747674718332e-07!GO:0019829;cation-transporting ATPase activity;2.67420674081222e-07!GO:0031497;chromatin assembly;2.87293914317029e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.98793329785651e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.08768271285198e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.39479844011938e-07!GO:0044431;Golgi apparatus part;3.7768393877309e-07!GO:0006754;ATP biosynthetic process;4.74175548228881e-07!GO:0006753;nucleoside phosphate metabolic process;4.74175548228881e-07!GO:0016023;cytoplasmic membrane-bound vesicle;4.85224005445467e-07!GO:0009117;nucleotide metabolic process;5.21299554079454e-07!GO:0003697;single-stranded DNA binding;5.23865274770435e-07!GO:0005525;GTP binding;5.53725432132705e-07!GO:0031988;membrane-bound vesicle;6.80693429388716e-07!GO:0007005;mitochondrion organization and biogenesis;7.25257779202633e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.5832172675474e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.71900326104913e-07!GO:0030120;vesicle coat;9.51656463235174e-07!GO:0030662;coated vesicle membrane;9.51656463235174e-07!GO:0005768;endosome;1.01621606958657e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.22433823286371e-06!GO:0048475;coated membrane;1.24840884966959e-06!GO:0030117;membrane coat;1.24840884966959e-06!GO:0006099;tricarboxylic acid cycle;1.26209772522459e-06!GO:0046356;acetyl-CoA catabolic process;1.26209772522459e-06!GO:0051170;nuclear import;1.28789267279408e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.30316762901361e-06!GO:0005788;endoplasmic reticulum lumen;1.36216760132907e-06!GO:0016567;protein ubiquitination;1.36843213069937e-06!GO:0031252;leading edge;1.38239321494333e-06!GO:0032446;protein modification by small protein conjugation;1.38780681707947e-06!GO:0045786;negative regulation of progression through cell cycle;1.66562466487273e-06!GO:0009108;coenzyme biosynthetic process;1.827789818022e-06!GO:0006916;anti-apoptosis;2.33236948804714e-06!GO:0045259;proton-transporting ATP synthase complex;2.47927175142639e-06!GO:0016787;hydrolase activity;2.47978245693343e-06!GO:0050789;regulation of biological process;2.72592873011195e-06!GO:0019899;enzyme binding;2.82736464326776e-06!GO:0016564;transcription repressor activity;2.92633629035337e-06!GO:0030036;actin cytoskeleton organization and biogenesis;2.97589655840157e-06!GO:0031968;organelle outer membrane;3.22542720139401e-06!GO:0006606;protein import into nucleus;3.23920738000244e-06!GO:0006084;acetyl-CoA metabolic process;3.23920738000244e-06!GO:0016491;oxidoreductase activity;3.28797436689872e-06!GO:0003899;DNA-directed RNA polymerase activity;3.28807299131412e-06!GO:0031410;cytoplasmic vesicle;3.28963206047914e-06!GO:0051028;mRNA transport;3.48183690899716e-06!GO:0031982;vesicle;3.51651673398395e-06!GO:0003724;RNA helicase activity;4.08205777010147e-06!GO:0003714;transcription corepressor activity;4.14846761209234e-06!GO:0003713;transcription coactivator activity;4.20397985653288e-06!GO:0000245;spliceosome assembly;4.45073768616578e-06!GO:0043566;structure-specific DNA binding;4.4835017563063e-06!GO:0007010;cytoskeleton organization and biogenesis;4.61577812947106e-06!GO:0051187;cofactor catabolic process;4.61577812947106e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.61577812947106e-06!GO:0016568;chromatin modification;4.81736186012052e-06!GO:0043069;negative regulation of programmed cell death;4.87277388076134e-06!GO:0019867;outer membrane;5.09023667879657e-06!GO:0005667;transcription factor complex;5.27222817399324e-06!GO:0006752;group transfer coenzyme metabolic process;6.2518998719145e-06!GO:0043066;negative regulation of apoptosis;6.99812777229076e-06!GO:0044440;endosomal part;7.9479250005262e-06!GO:0010008;endosome membrane;7.9479250005262e-06!GO:0032561;guanyl ribonucleotide binding;8.31430626311869e-06!GO:0019001;guanyl nucleotide binding;8.31430626311869e-06!GO:0004298;threonine endopeptidase activity;8.44402347907532e-06!GO:0000151;ubiquitin ligase complex;8.5790268527601e-06!GO:0051329;interphase of mitotic cell cycle;8.9773866300174e-06!GO:0005762;mitochondrial large ribosomal subunit;9.33426274097827e-06!GO:0000315;organellar large ribosomal subunit;9.33426274097827e-06!GO:0043623;cellular protein complex assembly;9.52550358776174e-06!GO:0000139;Golgi membrane;9.56347509326783e-06!GO:0051325;interphase;1.03930979467101e-05!GO:0005741;mitochondrial outer membrane;1.13038670184392e-05!GO:0009109;coenzyme catabolic process;1.36089907294691e-05!GO:0005770;late endosome;1.74550230937927e-05!GO:0005819;spindle;1.77257049687807e-05!GO:0016563;transcription activator activity;1.98927955753047e-05!GO:0030029;actin filament-based process;2.09479482747105e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.14990763250123e-05!GO:0016853;isomerase activity;2.27835399565197e-05!GO:0005813;centrosome;3.0234668723124e-05!GO:0005769;early endosome;3.16025622257718e-05!GO:0019843;rRNA binding;3.37191910391961e-05!GO:0005773;vacuole;3.99052797234434e-05!GO:0030867;rough endoplasmic reticulum membrane;4.11495263685855e-05!GO:0006091;generation of precursor metabolites and energy;4.26221406198798e-05!GO:0006613;cotranslational protein targeting to membrane;4.44649363748136e-05!GO:0048522;positive regulation of cellular process;4.95934868577657e-05!GO:0045454;cell redox homeostasis;5.05690319011998e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.44025977578086e-05!GO:0008047;enzyme activator activity;5.87908993088998e-05!GO:0008186;RNA-dependent ATPase activity;6.81082661157289e-05!GO:0007264;small GTPase mediated signal transduction;7.53312560128781e-05!GO:0008092;cytoskeletal protein binding;7.8929682209193e-05!GO:0005815;microtubule organizing center;8.90407079253896e-05!GO:0007243;protein kinase cascade;9.34970962990151e-05!GO:0051427;hormone receptor binding;9.55717039362139e-05!GO:0016044;membrane organization and biogenesis;9.77065743345738e-05!GO:0031324;negative regulation of cellular metabolic process;0.000104099136553503!GO:0000786;nucleosome;0.000109221275529424!GO:0005798;Golgi-associated vesicle;0.000130198703583053!GO:0033116;ER-Golgi intermediate compartment membrane;0.000135771637883916!GO:0005048;signal sequence binding;0.000142855613221915!GO:0065009;regulation of a molecular function;0.000163398381870585!GO:0051087;chaperone binding;0.000175528741726409!GO:0005905;coated pit;0.000183483405029432!GO:0030880;RNA polymerase complex;0.000187412731970563!GO:0004004;ATP-dependent RNA helicase activity;0.00019469238363184!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000201033638850071!GO:0035257;nuclear hormone receptor binding;0.000202268212453876!GO:0044452;nucleolar part;0.0002241549826039!GO:0000323;lytic vacuole;0.000229874650117111!GO:0005764;lysosome;0.000229874650117111!GO:0043681;protein import into mitochondrion;0.000253310866105081!GO:0043021;ribonucleoprotein binding;0.000259688049576544!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000274488032652612!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000281384189485869!GO:0009892;negative regulation of metabolic process;0.000283761523394732!GO:0006261;DNA-dependent DNA replication;0.000290254072566286!GO:0005096;GTPase activator activity;0.000316359080002825!GO:0005885;Arp2/3 protein complex;0.000316359080002825!GO:0016859;cis-trans isomerase activity;0.000323090964681641!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000330302945116867!GO:0008654;phospholipid biosynthetic process;0.000330868924680935!GO:0042802;identical protein binding;0.000389571259837772!GO:0000314;organellar small ribosomal subunit;0.000399022620430184!GO:0005763;mitochondrial small ribosomal subunit;0.000399022620430184!GO:0048471;perinuclear region of cytoplasm;0.000400693757062969!GO:0015980;energy derivation by oxidation of organic compounds;0.000400693757062969!GO:0009165;nucleotide biosynthetic process;0.000400693757062969!GO:0051168;nuclear export;0.000414974567826316!GO:0000059;protein import into nucleus, docking;0.000426215533795849!GO:0008033;tRNA processing;0.000448821606703505!GO:0007051;spindle organization and biogenesis;0.000454177568681261!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000455186083641953!GO:0000428;DNA-directed RNA polymerase complex;0.000455186083641953!GO:0006414;translational elongation;0.000470649430125009!GO:0008094;DNA-dependent ATPase activity;0.000488371764773451!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000546129761393371!GO:0015399;primary active transmembrane transporter activity;0.000546129761393371!GO:0006626;protein targeting to mitochondrion;0.000549443039745065!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000561572092564855!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000660407066393705!GO:0007006;mitochondrial membrane organization and biogenesis;0.000717651554670456!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000717651554670456!GO:0008632;apoptotic program;0.000758038064733126!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000777108483966778!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000823225914450887!GO:0006612;protein targeting to membrane;0.000882908490090203!GO:0065007;biological regulation;0.00090172466305975!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000916162700994016!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000938089989778706!GO:0000775;chromosome, pericentric region;0.000945659453854602!GO:0000075;cell cycle checkpoint;0.00109331581135515!GO:0005657;replication fork;0.0011334848875701!GO:0051920;peroxiredoxin activity;0.00114719488209086!GO:0003684;damaged DNA binding;0.00139192296265116!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00166110331041212!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00166110331041212!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00166110331041212!GO:0051789;response to protein stimulus;0.00177300354155843!GO:0006986;response to unfolded protein;0.00177300354155843!GO:0019222;regulation of metabolic process;0.00182019194668704!GO:0016363;nuclear matrix;0.0019618437652437!GO:0007265;Ras protein signal transduction;0.00199185009221018!GO:0005874;microtubule;0.00202406483861816!GO:0048487;beta-tubulin binding;0.00207587377072213!GO:0051252;regulation of RNA metabolic process;0.00214079608666448!GO:0031072;heat shock protein binding;0.00229217384586805!GO:0008250;oligosaccharyl transferase complex;0.0023288743528893!GO:0051540;metal cluster binding;0.0023288743528893!GO:0051536;iron-sulfur cluster binding;0.0023288743528893!GO:0005791;rough endoplasmic reticulum;0.00238645112944297!GO:0030659;cytoplasmic vesicle membrane;0.00244989027540332!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00251520025585697!GO:0044262;cellular carbohydrate metabolic process;0.00251876450297859!GO:0008139;nuclear localization sequence binding;0.00255569482493179!GO:0005684;U2-dependent spliceosome;0.00259123366841512!GO:0006401;RNA catabolic process;0.00286184671929955!GO:0000082;G1/S transition of mitotic cell cycle;0.00292928950670284!GO:0006839;mitochondrial transport;0.00297550240676942!GO:0017166;vinculin binding;0.0030174926506232!GO:0030027;lamellipodium;0.00305033634795054!GO:0006383;transcription from RNA polymerase III promoter;0.00311255677560405!GO:0030663;COPI coated vesicle membrane;0.00314714772815884!GO:0030126;COPI vesicle coat;0.00314714772815884!GO:0043492;ATPase activity, coupled to movement of substances;0.00321090684731191!GO:0008361;regulation of cell size;0.0032438248818713!GO:0004576;oligosaccharyl transferase activity;0.00331621613199686!GO:0003729;mRNA binding;0.00333812507133916!GO:0003682;chromatin binding;0.00340887967265146!GO:0016481;negative regulation of transcription;0.0035893520274413!GO:0030695;GTPase regulator activity;0.00367509254234494!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00379095042648414!GO:0006402;mRNA catabolic process;0.0038879738433393!GO:0006950;response to stress;0.00401277994471684!GO:0032508;DNA duplex unwinding;0.00406836684015963!GO:0032392;DNA geometric change;0.00406836684015963!GO:0016049;cell growth;0.00411672862795495!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00412637120801511!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0041761576380946!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0041761576380946!GO:0006289;nucleotide-excision repair;0.00430356360219479!GO:0015992;proton transport;0.00430976318323646!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0044812723266582!GO:0003678;DNA helicase activity;0.00448582881445049!GO:0001558;regulation of cell growth;0.00452370847165645!GO:0030132;clathrin coat of coated pit;0.00452370847165645!GO:0006818;hydrogen transport;0.00453100404885015!GO:0015631;tubulin binding;0.00464266211213872!GO:0044433;cytoplasmic vesicle part;0.00465068098460874!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00490096692038767!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00497606408621877!GO:0030133;transport vesicle;0.00501020106784307!GO:0018196;peptidyl-asparagine modification;0.00507219067808058!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00507219067808058!GO:0030134;ER to Golgi transport vesicle;0.00509134868106551!GO:0016197;endosome transport;0.00518374213573281!GO:0046483;heterocycle metabolic process;0.0052127397349393!GO:0051539;4 iron, 4 sulfur cluster binding;0.00534153044493722!GO:0043488;regulation of mRNA stability;0.0053849446132295!GO:0043487;regulation of RNA stability;0.0053849446132295!GO:0030658;transport vesicle membrane;0.00551363149625104!GO:0050790;regulation of catalytic activity;0.00551665930758381!GO:0045941;positive regulation of transcription;0.00558708080185591!GO:0006509;membrane protein ectodomain proteolysis;0.00574071379318277!GO:0033619;membrane protein proteolysis;0.00574071379318277!GO:0000049;tRNA binding;0.00584489739509818!GO:0048500;signal recognition particle;0.00593790837088955!GO:0030137;COPI-coated vesicle;0.00605171973430452!GO:0005637;nuclear inner membrane;0.00606078016930882!GO:0031902;late endosome membrane;0.00609269064737513!GO:0008180;signalosome;0.00631358140460418!GO:0043284;biopolymer biosynthetic process;0.00633592881439574!GO:0004674;protein serine/threonine kinase activity;0.00635427446405753!GO:0030127;COPII vesicle coat;0.00665011781582761!GO:0012507;ER to Golgi transport vesicle membrane;0.00665011781582761!GO:0006595;polyamine metabolic process;0.00671108554303797!GO:0006897;endocytosis;0.00685313435645133!GO:0010324;membrane invagination;0.00685313435645133!GO:0007242;intracellular signaling cascade;0.00687349228429706!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00687692768053116!GO:0050662;coenzyme binding;0.00697130784142378!GO:0016126;sterol biosynthetic process;0.00718332790169342!GO:0003779;actin binding;0.00731352487586209!GO:0005083;small GTPase regulator activity;0.00749608564207298!GO:0048518;positive regulation of biological process;0.00756952088720527!GO:0006891;intra-Golgi vesicle-mediated transport;0.007648902849643!GO:0006268;DNA unwinding during replication;0.00767534233993646!GO:0033673;negative regulation of kinase activity;0.00769718157572659!GO:0006469;negative regulation of protein kinase activity;0.00769718157572659!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00776389471444603!GO:0030118;clathrin coat;0.00792615397769342!GO:0005774;vacuolar membrane;0.00810128402762844!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00821053736036239!GO:0045045;secretory pathway;0.00822570598131837!GO:0006405;RNA export from nucleus;0.00826298958565068!GO:0007050;cell cycle arrest;0.00839971906331608!GO:0046474;glycerophospholipid biosynthetic process;0.00847818439618772!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00851376496453462!GO:0004518;nuclease activity;0.00881401610114881!GO:0051348;negative regulation of transferase activity;0.00881401610114881!GO:0007088;regulation of mitosis;0.00895269856828249!GO:0006352;transcription initiation;0.00908133840527634!GO:0035258;steroid hormone receptor binding;0.0094295407622844!GO:0006695;cholesterol biosynthetic process;0.0094694170414639!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0095626793305023!GO:0015002;heme-copper terminal oxidase activity;0.0095626793305023!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0095626793305023!GO:0004129;cytochrome-c oxidase activity;0.0095626793305023!GO:0006778;porphyrin metabolic process;0.00962033155791376!GO:0033013;tetrapyrrole metabolic process;0.00962033155791376!GO:0016301;kinase activity;0.00968646900534013!GO:0008312;7S RNA binding;0.0100258340284591!GO:0030041;actin filament polymerization;0.0102959137519096!GO:0045893;positive regulation of transcription, DNA-dependent;0.0107775912768719!GO:0030176;integral to endoplasmic reticulum membrane;0.0109555409324683!GO:0005832;chaperonin-containing T-complex;0.0109555409324683!GO:0030660;Golgi-associated vesicle membrane;0.0110399698528008!GO:0046467;membrane lipid biosynthetic process;0.0111126391956473!GO:0006611;protein export from nucleus;0.0112259278799496!GO:0006740;NADPH regeneration;0.0112475608622672!GO:0006098;pentose-phosphate shunt;0.0112475608622672!GO:0046489;phosphoinositide biosynthetic process;0.0113170810508032!GO:0009967;positive regulation of signal transduction;0.0114400158923602!GO:0001568;blood vessel development;0.0114529225749625!GO:0043022;ribosome binding;0.0116541985923877!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0117564010790536!GO:0009112;nucleobase metabolic process;0.0117749281789154!GO:0012506;vesicle membrane;0.0117749281789154!GO:0051101;regulation of DNA binding;0.0117749281789154!GO:0051098;regulation of binding;0.0119968272697715!GO:0008022;protein C-terminus binding;0.0121751504133958!GO:0048660;regulation of smooth muscle cell proliferation;0.0122693545442794!GO:0022415;viral reproductive process;0.0123532897637276!GO:0030521;androgen receptor signaling pathway;0.0126235386162299!GO:0005862;muscle thin filament tropomyosin;0.0126235386162299!GO:0001726;ruffle;0.0126235386162299!GO:0003711;transcription elongation regulator activity;0.0129426528462877!GO:0015036;disulfide oxidoreductase activity;0.01307513960112!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0131593769029254!GO:0009303;rRNA transcription;0.0132741133880882!GO:0022408;negative regulation of cell-cell adhesion;0.01377988022512!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.01377988022512!GO:0045047;protein targeting to ER;0.01377988022512!GO:0007162;negative regulation of cell adhesion;0.014032208706087!GO:0006302;double-strand break repair;0.0148164095781736!GO:0006284;base-excision repair;0.0150843158114324!GO:0008629;induction of apoptosis by intracellular signals;0.0151046666206947!GO:0042168;heme metabolic process;0.0152477229190713!GO:0006417;regulation of translation;0.0152794176204248!GO:0000776;kinetochore;0.0152970443352678!GO:0003690;double-stranded DNA binding;0.0153603023727882!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0155126834990104!GO:0004177;aminopeptidase activity;0.0157917643138757!GO:0008637;apoptotic mitochondrial changes;0.015841256045104!GO:0016251;general RNA polymerase II transcription factor activity;0.0160390769894653!GO:0043086;negative regulation of catalytic activity;0.0163125935539763!GO:0005869;dynactin complex;0.0164822950414809!GO:0000209;protein polyubiquitination;0.0169429162542731!GO:0006118;electron transport;0.0170868493855706!GO:0044437;vacuolar part;0.0181583928031133!GO:0001944;vasculature development;0.0184276049585397!GO:0007017;microtubule-based process;0.0188933655321314!GO:0000096;sulfur amino acid metabolic process;0.019366180164035!GO:0007266;Rho protein signal transduction;0.0194280312242916!GO:0008154;actin polymerization and/or depolymerization;0.0196888384844142!GO:0045792;negative regulation of cell size;0.0198737033642299!GO:0022890;inorganic cation transmembrane transporter activity;0.0199184170132088!GO:0016584;nucleosome positioning;0.0199246444976223!GO:0007052;mitotic spindle organization and biogenesis;0.0200858259048852!GO:0048468;cell development;0.0204478678316777!GO:0043189;H4/H2A histone acetyltransferase complex;0.020816576176888!GO:0001953;negative regulation of cell-matrix adhesion;0.0211695976441832!GO:0004527;exonuclease activity;0.0212892129036191!GO:0005765;lysosomal membrane;0.0213053783690725!GO:0043065;positive regulation of apoptosis;0.0215655105586689!GO:0047485;protein N-terminus binding;0.0216159545783825!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0218342749694498!GO:0030308;negative regulation of cell growth;0.0219545844098669!GO:0009966;regulation of signal transduction;0.0222170395540435!GO:0006082;organic acid metabolic process;0.0223095869118209!GO:0007040;lysosome organization and biogenesis;0.0225330003181713!GO:0007093;mitotic cell cycle checkpoint;0.0226214769403539!GO:0030119;AP-type membrane coat adaptor complex;0.0226550408823431!GO:0000339;RNA cap binding;0.0229146008666855!GO:0000178;exosome (RNase complex);0.0236809016662223!GO:0051128;regulation of cellular component organization and biogenesis;0.0241503965753346!GO:0019752;carboxylic acid metabolic process;0.0242043859983251!GO:0043068;positive regulation of programmed cell death;0.0242043859983251!GO:0006310;DNA recombination;0.0242043859983251!GO:0008538;proteasome activator activity;0.0245035850938867!GO:0030833;regulation of actin filament polymerization;0.0248117723076302!GO:0007033;vacuole organization and biogenesis;0.0248129564531824!GO:0008243;plasminogen activator activity;0.0248473034131933!GO:0006007;glucose catabolic process;0.0248473034131933!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0251519160033243!GO:0035035;histone acetyltransferase binding;0.0251871513391308!GO:0007346;regulation of progression through mitotic cell cycle;0.0252165756098943!GO:0004003;ATP-dependent DNA helicase activity;0.0256509216953522!GO:0035267;NuA4 histone acetyltransferase complex;0.0256843705985666!GO:0006144;purine base metabolic process;0.0257161498366463!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0259345311927835!GO:0051270;regulation of cell motility;0.0259587011438607!GO:0043624;cellular protein complex disassembly;0.0259741132071062!GO:0019904;protein domain specific binding;0.0261093086180599!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0265134626944091!GO:0006376;mRNA splice site selection;0.0266092725023293!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0266092725023293!GO:0032984;macromolecular complex disassembly;0.0271204605694554!GO:0046822;regulation of nucleocytoplasmic transport;0.0273897650007383!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0274504110711222!GO:0000910;cytokinesis;0.0274585351058669!GO:0003756;protein disulfide isomerase activity;0.0274585351058669!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0274585351058669!GO:0007034;vacuolar transport;0.0278318480503912!GO:0000123;histone acetyltransferase complex;0.0278481484972993!GO:0051287;NAD binding;0.0278481484972993!GO:0007021;tubulin folding;0.0278481484972993!GO:0040008;regulation of growth;0.0278860546480982!GO:0006779;porphyrin biosynthetic process;0.0280405785939294!GO:0033014;tetrapyrrole biosynthetic process;0.0280405785939294!GO:0006520;amino acid metabolic process;0.0283856905121197!GO:0031901;early endosome membrane;0.0285099402826043!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0290013983752595!GO:0008168;methyltransferase activity;0.0291714151313413!GO:0016741;transferase activity, transferring one-carbon groups;0.0291714151313413!GO:0040011;locomotion;0.029397329824122!GO:0031529;ruffle organization and biogenesis;0.029461081795411!GO:0006497;protein amino acid lipidation;0.0295469359461913!GO:0031625;ubiquitin protein ligase binding;0.0296612880061116!GO:0005092;GDP-dissociation inhibitor activity;0.0296612880061116!GO:0043241;protein complex disassembly;0.0310371922307419!GO:0000922;spindle pole;0.0310605805872841!GO:0005669;transcription factor TFIID complex;0.0314934432522195!GO:0005099;Ras GTPase activator activity;0.0317290589700783!GO:0031272;regulation of pseudopodium formation;0.0317290589700783!GO:0031269;pseudopodium formation;0.0317290589700783!GO:0031344;regulation of cell projection organization and biogenesis;0.0317290589700783!GO:0031268;pseudopodium organization and biogenesis;0.0317290589700783!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0317290589700783!GO:0031274;positive regulation of pseudopodium formation;0.0317290589700783!GO:0000287;magnesium ion binding;0.0317290589700783!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0317610443631895!GO:0030131;clathrin adaptor complex;0.0319861205846764!GO:0005100;Rho GTPase activator activity;0.0330933443862586!GO:0030384;phosphoinositide metabolic process;0.0330933443862586!GO:0031124;mRNA 3'-end processing;0.0331109666091211!GO:0048659;smooth muscle cell proliferation;0.0338155795031296!GO:0009889;regulation of biosynthetic process;0.034057767547154!GO:0006650;glycerophospholipid metabolic process;0.0345934289833942!GO:0009116;nucleoside metabolic process;0.0347789572988915!GO:0005876;spindle microtubule;0.0352033868681837!GO:0016272;prefoldin complex;0.0352756293048286!GO:0042770;DNA damage response, signal transduction;0.0358636511283029!GO:0005784;translocon complex;0.0358636511283029!GO:0030518;steroid hormone receptor signaling pathway;0.0368384570445278!GO:0030032;lamellipodium biogenesis;0.0369250704800147!GO:0006378;mRNA polyadenylation;0.037544846589723!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0379569724617358!GO:0006892;post-Golgi vesicle-mediated transport;0.0380708409911864!GO:0031326;regulation of cellular biosynthetic process;0.0382333183695635!GO:0004680;casein kinase activity;0.0383762284890034!GO:0032507;maintenance of cellular protein localization;0.0383846232560886!GO:0045879;negative regulation of smoothened signaling pathway;0.038681737410006!GO:0051059;NF-kappaB binding;0.0392130978589918!GO:0009124;nucleoside monophosphate biosynthetic process;0.0394747706893112!GO:0009123;nucleoside monophosphate metabolic process;0.0394747706893112!GO:0040012;regulation of locomotion;0.039890149595498!GO:0030496;midbody;0.0401836050349147!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0403295362282067!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0408739755989083!GO:0043414;biopolymer methylation;0.0408928564713674!GO:0030911;TPR domain binding;0.0409028457510981!GO:0008536;Ran GTPase binding;0.0412753691483968!GO:0030433;ER-associated protein catabolic process;0.0418905436825255!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0418905436825255!GO:0046426;negative regulation of JAK-STAT cascade;0.0424258007190514!GO:0042393;histone binding;0.0429500226099322!GO:0006643;membrane lipid metabolic process;0.043521705857899!GO:0006783;heme biosynthetic process;0.0441430336695449!GO:0046966;thyroid hormone receptor binding;0.0441573926568795!GO:0030913;paranodal junction assembly;0.0448269212254964!GO:0032288;myelin formation;0.0448269212254964!GO:0019206;nucleoside kinase activity;0.0466917377885896!GO:0030125;clathrin vesicle coat;0.046857860603332!GO:0030665;clathrin coated vesicle membrane;0.046857860603332!GO:0008213;protein amino acid alkylation;0.0474308214514645!GO:0006479;protein amino acid methylation;0.0474308214514645!GO:0006807;nitrogen compound metabolic process;0.0475371999785243!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0476027727854678!GO:0006979;response to oxidative stress;0.0476177361876452!GO:0045926;negative regulation of growth;0.047663173545715!GO:0005652;nuclear lamina;0.0477512541235135!GO:0030149;sphingolipid catabolic process;0.047932853369615!GO:0051052;regulation of DNA metabolic process;0.047932853369615!GO:0043596;nuclear replication fork;0.0484017751635227!GO:0006917;induction of apoptosis;0.0484499330070304
|sample_id=11413
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=artery
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11413-118E9;search_select_hide=table117:FF:11413-118E9
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Endothelial Cells - Artery, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12023
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueartery
dev stage53 years old adult
sexmale
age53
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1596
catalog numberCA300-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005046
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12023 CAGE DRX008222 DRR009094
Accession ID Hg19

Library idBAMCTSS
CNhs12023 DRZ000519 DRZ001904
Accession ID Hg38

Library idBAMCTSS
CNhs12023 DRZ011869 DRZ013254
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005046
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GTGGCC sRNA-Seq DRX037050 DRR041416
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GTGGCC DRZ007058


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.11
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.15
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.214
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.545
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0061
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.272
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.441
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.28
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.493
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.678
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.356
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0824
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.211
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.836
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.152
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12023

Jaspar motifP-value
MA0002.20.189
MA0003.10.378
MA0004.10.312
MA0006.10.0516
MA0007.10.0471
MA0009.10.292
MA0014.10.994
MA0017.10.682
MA0018.22.88203e-4
MA0019.10.0404
MA0024.10.224
MA0025.10.948
MA0027.10.943
MA0028.10.643
MA0029.10.493
MA0030.10.181
MA0031.10.114
MA0035.20.00179
MA0038.10.152
MA0039.20.254
MA0040.10.46
MA0041.10.203
MA0042.10.719
MA0043.11.00519e-5
MA0046.10.645
MA0047.20.267
MA0048.10.0225
MA0050.10.0148
MA0051.10.696
MA0052.10.564
MA0055.11.43533e-4
MA0057.10.292
MA0058.10.308
MA0059.10.135
MA0060.18.92255e-4
MA0061.10.21
MA0062.20.381
MA0065.20.832
MA0066.10.811
MA0067.10.0966
MA0068.10.939
MA0069.10.0782
MA0070.10.996
MA0071.10.761
MA0072.10.518
MA0073.10.266
MA0074.10.778
MA0076.10.28
MA0077.12.36816e-6
MA0078.10.062
MA0079.20.327
MA0080.22.63279e-4
MA0081.10.0856
MA0083.10.173
MA0084.10.316
MA0087.10.194
MA0088.10.153
MA0090.10.214
MA0091.10.723
MA0092.10.706
MA0093.10.317
MA0099.22.79238e-14
MA0100.10.3
MA0101.10.681
MA0102.25.67965e-5
MA0103.10.0311
MA0104.20.871
MA0105.10.415
MA0106.10.00645
MA0107.10.615
MA0108.20.00719
MA0111.10.364
MA0112.20.637
MA0113.10.197
MA0114.10.339
MA0115.10.787
MA0116.10.916
MA0117.10.298
MA0119.10.0146
MA0122.10.056
MA0124.10.568
MA0125.10.458
MA0131.10.638
MA0135.10.274
MA0136.10.0068
MA0137.20.372
MA0138.20.896
MA0139.10.376
MA0140.10.0033
MA0141.10.0535
MA0142.10.443
MA0143.10.559
MA0144.10.331
MA0145.10.165
MA0146.10.751
MA0147.10.552
MA0148.10.128
MA0149.10.0187
MA0150.10.0519
MA0152.10.374
MA0153.10.539
MA0154.10.813
MA0155.10.122
MA0156.11.00275e-4
MA0157.10.431
MA0159.10.91
MA0160.10.485
MA0162.10.0998
MA0163.10.336
MA0164.10.658
MA0258.10.684
MA0259.10.89



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12023

Novel motifP-value
10.864
100.512
1000.517
1010.0239
1020.716
1030.63
1040.686
1050.754
1060.319
1070.00579
1080.549
1090.0826
110.21
1100.016
1110.817
1120.699
1130.0805
1140.964
1150.683
1160.468
1170.502
1180.201
1190.972
120.342
1200.028
1210.251
1220.751
1230.00866
1240.0322
1250.676
1260.682
1270.882
1280.385
1290.735
130.167
1300.217
1310.484
1320.533
1330.274
1340.401
1350.364
1360.00972
1370.104
1380.999
1390.671
140.472
1400.82
1410.926
1420.863
1430.174
1440.11
1450.151
1460.131
1470.486
1480.0462
1490.109
150.935
1500.0428
1510.996
1520.0233
1530.0312
1540.82
1550.467
1560.417
1570.185
1580.0373
1590.669
161
1600.0622
1610.447
1620.775
1630.902
1640.662
1650.0683
1660.214
1670.115
1680.46
1690.128
170.364
180.56
190.253
20.84
200.481
210.617
220.417
230.695
240.442
250.452
260.428
270.794
280.0735
290.575
30.786
300.874
310.766
320.509
330.248
340.226
350.253
360.0997
370.508
380.29
390.584
40.929
400.00449
410.207
420.835
430.426
440.79
450.262
460.948
470.362
480.0743
490.21
50.458
500.61
510.87
520.242
530.443
540.688
550.154
560.835
570.47
580.0544
590.168
60.268
600.381
610.957
620.25
630.403
640.809
650.892
660.0864
670.717
680.219
690.532
70.753
700.24
710.683
720.362
731.45882e-4
740.232
750.424
760.771
770.156
780.595
790.188
80.0378
800.919
810.256
820.175
830.655
840.414
850.196
860.918
870.00149
880.937
890.757
90.516
900.0666
910.602
920.496
930.836
940.19
950.0176
960.583
970.782
980.492
990.00676



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12023


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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