FF:11563-120D6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005141 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008331;DRR009203;DRZ000628;DRZ002013;DRZ011978;DRZ013363 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000260,FF:0000261 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.21!1619.74!GATA2;;chr6:135502501..135502546,+!p1@MYB!1.95!104.51!MYB;;chrX:48644984..48645005,+!p1@GATA1!1.93!83.82!GATA1;;chr12:54694758..54694805,-!p1@NFE2!1.88!89.81!NFE2;;chr14:75988831..75988847,+!p2@BATF!1.87!72.82!BATF;;chr16:68119324..68119364,+!p1@NFATC3!1.79!255.96!NFATC3;;chr1:92951607..92951661,-!p1@GFI1!1.79!61.02!GFI1;;chr9:135854091..135854159,+!p1@GFI1B!1.79!60.05!GFI1B;;chr7:50343634..50343717,+!p2@IKZF1!1.77!57.23!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.74!53.97!IKZF1;;chr19:13213511..13213545,-!p2@LYL1!1.73!56.79!LYL1;;chr11:47400078..47400106,-!p1@SPI1!1.70!49.40!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.69!63.75!BATF;;chr2:68592406..68592424,+!p1@PLEK!1.67!45.34!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.66!44.55!IKZF1;;chr7:137620650..137620677,-!p3@CREB3L2!1.63!41.91!CREB3L2;;chr1:158985493..158985535,+!p4@IFI16!1.55!52.21!IFI16;;chr6:135502408..135502459,+!p2@MYB!1.53!38.12!MYB;;chr21:36421535..36421610,-!p2@RUNX1!1.49!104.34!RUNX1;;chr12:54694807..54694832,-!p3@NFE2!1.49!29.76!NFE2;;chr7:137620684..137620711,-!p4@CREB3L2!1.48!29.50!CREB3L2;;chr20:50159198..50159299,-!p1@NFATC2!1.45!39.71!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.41!150.30!GATA2;;chr19:13213662..13213686,-!p1@LYL1!1.38!33.81!LYL1;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.97!RUNX3;;chr20:46130846..46130869,+!p5@NCOA3!1.33!22.01!NCOA3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!19.81!ZBED1;;chr3:128205876..128205904,-!p4@GATA2!1.31!19.63!GATA2;;chr11:128563948..128564003,+!p1@FLI1!1.30!224.08!FLI1;;chr12:48276548..48276564,-!p3@VDR!1.30!19.02!VDR;;chr11:47400045..47400060,-!p6@SPI1!1.30!18.84!SPI1;;chr12:124968706..124968748,-!p18@NCOR2!1.29!18.67!NCOR2;;chr21:36421347..36421380,-!p8@RUNX1!1.28!18.05!RUNX1;;chr6:135502472..135502489,+!p3@MYB!1.27!17.43!MYB;;chr19:13213555..13213568,-!p5@LYL1!1.22!15.58!LYL1;;chr10:94449703..94449718,+!p1@HHEX!1.21!57.58!HHEX;;chr14:75988851..75988862,+!p3@BATF!1.21!15.32!BATF;;chr2:145277640..145277771,-!p1@ZEB2!1.20!193.53!ZEB2;;chr19:4067039..4067064,-!p3@ZBTB7A!1.19!41.82!ZBTB7A;;chr18:22932080..22932170,-!p1@ZNF521!1.18!59.78!ZNF521;;chr21:39870339..39870443,-!p1@ERG!1.18!14.26!ERG;;chr1:158985469..158985489,+!p7@IFI16!1.17!16.38!IFI16;;chr17:46621279..46621297,-!p13@HOXB2!1.17!13.82!HOXB2;;chr1:47695003..47695042,-!p2@TAL1!1.16!13.56!TAL1;;chr1:204042233..204042249,+!p1@SOX13!1.15!82.15!SOX13;;chr13:41593425..41593480,-!p1@ELF1!1.14!81.89!ELF1;;chr3:69788576..69788648,+!p1@MITF!1.14!68.24!MITF;;chr21:36421147..36421193,-!p10@RUNX1!1.14!12.77!RUNX1;;chr8:22550982..22550999,-!p1@EGR3!1.13!35.31!EGR3;;chr10:35484053..35484076,+!p1@CREM!1.11!29.67!CREM;;chr6:15401104..15401166,+!p5@JARID2!1.10!11.62!JARID2;;chr13:41635029..41635044,-!p4@ELF1!1.08!23.69!ELF1;;chr21:36421518..36421532,-!p11@RUNX1!1.08!10.92!RUNX1;;chr15:37390850..37390909,-!p3@MEIS2!1.07!21.40!MEIS2;;chr1:92949331..92949377,-!p2@GFI1!1.07!10.74!GFI1;;chr3:5021113..5021180,+!p1@BHLHE40!1.06!736.00!BHLHE40;;chr3:5022272..5022321,+!p7@BHLHE40!1.06!10.48!BHLHE40;;chr2:178128250..178128293,-!p6@NFE2L2!1.04!25.36!NFE2L2;;chr11:47399996..47400014,-!p4@SPI1!1.04!10.04!SPI1;;chr1:164528410..164528428,+!p1@PBX1!1.03!73.26!PBX1;;chr16:79634624..79634642,-!p1@MAF!1.03!39.18!MAF;;chr3:128205801..128205819,-!p6@GATA2!1.03!9.60!GATA2;;chr7:17338266..17338282,+!p1@AHR!1.02!104.16!AHR;;chr16:68118689..68118733,+!p3@NFATC3!1.02!24.04!NFATC3;;chr2:192015701..192015743,-!p1@STAT4!1.02!13.12!STAT4;;chr3:71179699..71179744,-!p2@FOXP1!1.00!69.47!FOXP1;;chr16:88752889..88752921,-!p1@SNAI3!0.99!10.21!SNAI3;;chr16:88752861..88752884,-!p2@SNAI3!0.98!8.63!SNAI3;;chr11:47400062..47400077,-!p2@SPI1!0.98!8.45!SPI1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.28!PLEK;;chr8:60031619..60031676,-!p1@TOX!0.96!17.87!TOX;;chr16:79633894..79633954,-!p3@MAF!0.95!15.50!MAF;;chr3:128205779..128205797,-!p5@GATA2!0.94!7.66!GATA2;;chr2:145274900..145274934,-!p4@ZEB2!0.93!47.55!ZEB2;;chr1:158985457..158985468,+!p12@IFI16!0.93!7.57!IFI16;;chr11:47400032..47400043,-!p5@SPI1!0.93!7.48!SPI1;;chr3:5021026..5021035,+!p5@BHLHE40!0.92!9.25!BHLHE40;;chr2:178128199..178128245,-!p3@NFE2L2!0.91!39.89!NFE2L2;;chr17:46621311..46621332,-!p8@HOXB2!0.91!9.51!HOXB2;;chr1:205649747..205649751,-!p10@ELK4,p4@SLC45A3!0.91!7.04!ELK4;;chr3:5021191..5021202,+!p3@BHLHE40!0.90!19.19!BHLHE40;;chr16:68119294..68119305,+!p6@NFATC3!0.90!9.51!NFATC3;;chr3:5021268..5021282,+!p4@BHLHE40!0.89!14.26!BHLHE40;;chr3:141150883..141150961,+!p6@ZBTB38!0.89!6.78!ZBTB38;;chr1:92949505..92949543,-!p5@GFI1!0.89!6.78!GFI1;;chr2:8822176..8822196,+!p1@ID2!0.88!983.50!ID2;;chr7:27135591..27135658,-!p1@HOXA1!0.87!12.68!HOXA1;;chr13:41635067..41635100,-!p5@ELF1!0.86!12.33!ELF1;;chr1:44679370..44679422,+!p3@DMAP1!0.86!8.36!DMAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.51!HOXB2;;chr17:38465441..38465481,+!p6@RARA!0.84!7.48!RARA;;chrX:48644976..48644983,+!p2@GATA1!0.84!5.90!GATA1;;chr1:164528445..164528459,+!p2@PBX1!0.83!19.19!PBX1;;chr10:94449675..94449694,+!p2@HHEX!0.83!16.47!HHEX;;chr16:68119440..68119480,+!p4@NFATC3!0.83!9.95!NFATC3;;chr2:145271342..145271377,-!p5@ZEB2!0.83!5.81!ZEB2;;chr13:72441315..72441454,-!p1@DACH1!0.82!11.62!DACH1;;chr9:16870710..16870763,-!p1@BNC2!0.82!10.13!BNC2;;chr1:204042275..204042286,+!p4@SOX13!0.82!9.16!SOX13;;chr12:54694738..54694749,-!p5@NFE2!0.82!5.55!NFE2;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.77!HOXB2;;chr9:16870659..16870675,-!p2@BNC2!0.81!6.87!BNC2;;chr1:47697539..47697573,-!p3@TAL1!0.81!5.46!TAL1;;chr3:128207349..128207386,-!p3@GATA2!0.81!5.46!GATA2;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.46!ATXN7;;chr7:77428066..77428132,+!p2@PHTF2!0.80!37.33!PHTF2;;chr6:28317685..28317761,+!p1@ZKSCAN3!0.80!29.23!ZKSCAN3;;chr1:47696918..47696935,-!p6@TAL1!0.80!5.37!TAL1;;chr1:47697881..47697910,-!p4@TAL1!0.80!5.37!TAL1;;chr19:52074502..52074587,+!p1@ZNF175!0.79!20.34!ZNF175;;chr17:46655704..46655718,-!p2@HOXB4!0.79!7.92!HOXB4;;chr15:37390482..37390572,-!p7@MEIS2!0.79!7.31!MEIS2;;chr1:93812261..93812303,+!p2@DR1!0.79!6.43!DR1;;chr3:5022254..5022271,+!p12@BHLHE40!0.79!5.19!BHLHE40;;chrX:48645010..48645015,+!p3@GATA1!0.79!5.19!GATA1;;chr19:13213465..13213478,-!p7@LYL1!0.79!5.11!LYL1;;chr4:106068026..106068084,+!p1@TET2!0.78!49.84!TET2;;chr20:46130619..46130664,+!p1@NCOA3!0.77!146.51!NCOA3;;chr16:67063211..67063240,+!p2@CBFB!0.77!25.45!CBFB;;chr15:37392616..37392638,-!p2@MEIS2!0.76!16.29!MEIS2;;chr1:204042723..204042784,+!p3@SOX13!0.76!8.28!SOX13;;chr2:192015750..192015793,-!p2@STAT4!0.76!6.60!STAT4;;chr17:46622440..46622477,-!p5@HOXB2!0.76!5.46!HOXB2;;chr12:124968655..124968666,-!p48@NCOR2!0.76!4.75!NCOR2;;chr20:46130672..46130686,+!p2@NCOA3!0.75!22.54!NCOA3;;chr9:130954041..130954121,-!p2@CIZ1!0.75!22.10!CIZ1;;chr5:139487608..139487663,+!p3@PURA!0.75!10.57!PURA;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.75!8.19!ELK4;;chr7:127032114..127032163,-!p2@ZNF800!0.75!7.13!ZNF800;;chr11:47399947..47399961,-!p3@SPI1!0.75!4.67!SPI1;;chr19:13213634..13213645,-!p8@LYL1!0.75!4.67!LYL1;;chr19:13213954..13214021,-!p4@LYL1!0.75!4.58!LYL1;;chr20:46130827..46130838,+!p8@NCOA3!0.75!4.58!NCOA3;;chr19:4067174..4067200,-!p9@ZBTB7A!0.74!5.55!ZBTB7A;;chr2:48541789..48541874,+!p1@FOXN2!0.73!110.94!FOXN2;;chr9:117150254..117150271,-!p1@AKNA!0.73!12.94!AKNA;;chr17:46675420..46675465,-!p3@HOXB6!0.73!5.19!HOXB6;;chr11:47237922..47237964,+!p4@DDB2!0.73!5.19!DDB2;;chr1:92952473..92952489,-!p3@GFI1!0.73!4.40!GFI1;;chr6:15246261..15246312,+!p1@JARID2!0.72!117.54!JARID2;;chr6:42419649..42419673,-!p3@TRERF1!0.72!7.84!TRERF1;;chr16:68119250..68119293,+!p2@NFATC3!0.71!36.45!NFATC3;;chr3:114866084..114866118,-!p2@ZBTB20!0.71!16.55!ZBTB20;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.18!PBX1;;chr16:3313791..3313834,+!p2@ZNF263!0.71!9.95!ZNF263;;chr19:38085768..38085821,+!p1@ZNF540!0.71!6.52!ZNF540;;chr3:5022174..5022207,+!p8@BHLHE40!0.71!5.02!BHLHE40;;chr1:158985553..158985574,+!p14@IFI16!0.71!4.14!IFI16;;chr7:17338239..17338262,+!p2@AHR!0.70!34.07!AHR;;chr19:36391434..36391450,-!p1@NFKBID!0.70!8.54!NFKBID;;chr19:4066890..4066903,-!p6@ZBTB7A!0.70!6.78!ZBTB7A;;chr16:68120508..68120520,+!p9@NFATC3!0.70!3.96!NFATC3;;chr18:77160282..77160343,+!p2@NFATC1!0.69!27.74!NFATC1;;chr17:46655730..46655791,-!p1@HOXB4!0.69!10.65!HOXB4;;chr17:38465413..38465438,+!p5@RARA!0.69!6.60!RARA;;chr16:88519669..88519726,+!p1@ZFPM1!0.68!39.18!ZFPM1;;chr2:145275162..145275202,-!p2@ZEB2!0.68!25.53!ZEB2;;chr16:79634595..79634620,-!p2@MAF!0.68!7.48!MAF;;chr2:231084659..231084721,-!p1@SP110!0.67!99.14!SP110;;chrX:101186981..101187030,-!p1@ZMAT1!0.67!13.47!ZMAT1;;chr10:94449649..94449664,+!p3@HHEX!0.67!5.72!HHEX;;chr15:37392094..37392116,-!p6@MEIS2!0.67!4.75!MEIS2;;chr1:47691303..47691319,-!p5@TAL1!0.67!3.70!TAL1;;chr21:36260980..36261011,-!p1@RUNX1!0.66!120.80!RUNX1;;chr7:137686791..137686821,-!p1@CREB3L2!0.66!120.45!CREB3L2;;chr10:51572408..51572454,+!p3@NCOA4!0.66!24.13!NCOA4;;chr2:25564750..25564807,-!p1@DNMT3A!0.66!15.41!DNMT3A;;chr15:37391271..37391376,-!p5@MEIS2!0.66!7.22!MEIS2;;chr6:144385698..144385742,-!p2@PLAGL1!0.66!4.49!PLAGL1;;chr21:36421401..36421414,-!p16@RUNX1!0.66!3.61!RUNX1;;chr2:61108695..61108753,+!p1@REL!0.65!27.91!REL;;chr11:65687362..65687436,+!p3@DRAP1!0.65!18.23!DRAP1;;chr17:38474489..38474548,+!p1@RARA!0.64!126.26!RARA;;chr19:35759824..35759891,+!p1@USF2!0.64!123.36!USF2;;chr18:77155922..77155939,+!p1@NFATC1!0.64!10.48!NFATC1;;chr19:35455110..35455149,-!p1@ZNF792!0.64!7.22!ZNF792;;chr9:116638634..116638664,+!p2@ZNF618!0.64!7.13!ZNF618;;chr7:50343895..50343936,+!p5@IKZF1!0.64!3.35!IKZF1;;chr7:50344144..50344157,+!p6@IKZF1!0.64!3.35!IKZF1;;chr17:46655672..46655697,-!p3@HOXB4!0.64!3.35!HOXB4;;chr6:21593973..21593988,+!p1@SOX4!0.63!140.88!SOX4;;chr7:128577972..128578047,+!p1@IRF5!0.63!5.55!IRF5;;chr8:60031762..60031803,-!p3@TOX!0.63!5.02!TOX;;chr19:18391615..18391637,-!p5@JUND!0.63!4.49!JUND;;chr12:52431016..52431071,+!p4@NR4A1!0.63!3.96!NR4A1;;chr19:13213399..13213414,-!p6@LYL1!0.63!3.26!LYL1;;chr12:11802753..11802834,+!p2@ETV6!0.62!18.40!ETV6;;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| |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.21!1619.74!GATA2;;chr6:135502501..135502546,+!p1@MYB!1.95!104.51!MYB;;chrX:48644984..48645005,+!p1@GATA1!1.93!83.82!GATA1;;chr12:54694758..54694805,-!p1@NFE2!1.88!89.81!NFE2;;chr14:75988831..75988847,+!p2@BATF!1.87!72.82!BATF;;chr16:68119324..68119364,+!p1@NFATC3!1.79!255.96!NFATC3;;chr1:92951607..92951661,-!p1@GFI1!1.79!61.02!GFI1;;chr9:135854091..135854159,+!p1@GFI1B!1.79!60.05!GFI1B;;chr7:50343634..50343717,+!p2@IKZF1!1.77!57.23!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.74!53.97!IKZF1;;chr19:13213511..13213545,-!p2@LYL1!1.73!56.79!LYL1;;chr11:47400078..47400106,-!p1@SPI1!1.70!49.40!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.69!63.75!BATF;;chr2:68592406..68592424,+!p1@PLEK!1.67!45.34!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.66!44.55!IKZF1;;chr7:137620650..137620677,-!p3@CREB3L2!1.63!41.91!CREB3L2;;chr1:158985493..158985535,+!p4@IFI16!1.55!52.21!IFI16;;chr6:135502408..135502459,+!p2@MYB!1.53!38.12!MYB;;chr21:36421535..36421610,-!p2@RUNX1!1.49!104.34!RUNX1;;chr12:54694807..54694832,-!p3@NFE2!1.49!29.76!NFE2;;chr7:137620684..137620711,-!p4@CREB3L2!1.48!29.50!CREB3L2;;chr20:50159198..50159299,-!p1@NFATC2!1.45!39.71!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.41!150.30!GATA2;;chr19:13213662..13213686,-!p1@LYL1!1.38!33.81!LYL1;;chr1:25256756..25256774,-!p1@RUNX3!1.35!39.97!RUNX3;;chr20:46130846..46130869,+!p5@NCOA3!1.33!22.01!NCOA3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.32!19.81!ZBED1;;chr3:128205876..128205904,-!p4@GATA2!1.31!19.63!GATA2;;chr11:128563948..128564003,+!p1@FLI1!1.30!224.08!FLI1;;chr12:48276548..48276564,-!p3@VDR!1.30!19.02!VDR;;chr11:47400045..47400060,-!p6@SPI1!1.30!18.84!SPI1;;chr12:124968706..124968748,-!p18@NCOR2!1.29!18.67!NCOR2;;chr21:36421347..36421380,-!p8@RUNX1!1.28!18.05!RUNX1;;chr6:135502472..135502489,+!p3@MYB!1.27!17.43!MYB;;chr19:13213555..13213568,-!p5@LYL1!1.22!15.58!LYL1;;chr10:94449703..94449718,+!p1@HHEX!1.21!57.58!HHEX;;chr14:75988851..75988862,+!p3@BATF!1.21!15.32!BATF;;chr2:145277640..145277771,-!p1@ZEB2!1.20!193.53!ZEB2;;chr19:4067039..4067064,-!p3@ZBTB7A!1.19!41.82!ZBTB7A;;chr18:22932080..22932170,-!p1@ZNF521!1.18!59.78!ZNF521;;chr21:39870339..39870443,-!p1@ERG!1.18!14.26!ERG;;chr1:158985469..158985489,+!p7@IFI16!1.17!16.38!IFI16;;chr17:46621279..46621297,-!p13@HOXB2!1.17!13.82!HOXB2;;chr1:47695003..47695042,-!p2@TAL1!1.16!13.56!TAL1;;chr1:204042233..204042249,+!p1@SOX13!1.15!82.15!SOX13;;chr13:41593425..41593480,-!p1@ELF1!1.14!81.89!ELF1;;chr3:69788576..69788648,+!p1@MITF!1.14!68.24!MITF;;chr21:36421147..36421193,-!p10@RUNX1!1.14!12.77!RUNX1;;chr8:22550982..22550999,-!p1@EGR3!1.13!35.31!EGR3;;chr10:35484053..35484076,+!p1@CREM!1.11!29.67!CREM;;chr6:15401104..15401166,+!p5@JARID2!1.10!11.62!JARID2;;chr13:41635029..41635044,-!p4@ELF1!1.08!23.69!ELF1;;chr21:36421518..36421532,-!p11@RUNX1!1.08!10.92!RUNX1;;chr15:37390850..37390909,-!p3@MEIS2!1.07!21.40!MEIS2;;chr1:92949331..92949377,-!p2@GFI1!1.07!10.74!GFI1;;chr3:5021113..5021180,+!p1@BHLHE40!1.06!736.00!BHLHE40;;chr3:5022272..5022321,+!p7@BHLHE40!1.06!10.48!BHLHE40;;chr2:178128250..178128293,-!p6@NFE2L2!1.04!25.36!NFE2L2;;chr11:47399996..47400014,-!p4@SPI1!1.04!10.04!SPI1;;chr1:164528410..164528428,+!p1@PBX1!1.03!73.26!PBX1;;chr16:79634624..79634642,-!p1@MAF!1.03!39.18!MAF;;chr3:128205801..128205819,-!p6@GATA2!1.03!9.60!GATA2;;chr7:17338266..17338282,+!p1@AHR!1.02!104.16!AHR;;chr16:68118689..68118733,+!p3@NFATC3!1.02!24.04!NFATC3;;chr2:192015701..192015743,-!p1@STAT4!1.02!13.12!STAT4;;chr3:71179699..71179744,-!p2@FOXP1!1.00!69.47!FOXP1;;chr16:88752889..88752921,-!p1@SNAI3!0.99!10.21!SNAI3;;chr16:88752861..88752884,-!p2@SNAI3!0.98!8.63!SNAI3;;chr11:47400062..47400077,-!p2@SPI1!0.98!8.45!SPI1;;chr2:68592394..68592405,+!p2@PLEK!0.97!8.28!PLEK;;chr8:60031619..60031676,-!p1@TOX!0.96!17.87!TOX;;chr16:79633894..79633954,-!p3@MAF!0.95!15.50!MAF;;chr3:128205779..128205797,-!p5@GATA2!0.94!7.66!GATA2;;chr2:145274900..145274934,-!p4@ZEB2!0.93!47.55!ZEB2;;chr1:158985457..158985468,+!p12@IFI16!0.93!7.57!IFI16;;chr11:47400032..47400043,-!p5@SPI1!0.93!7.48!SPI1;;chr3:5021026..5021035,+!p5@BHLHE40!0.92!9.25!BHLHE40;;chr2:178128199..178128245,-!p3@NFE2L2!0.91!39.89!NFE2L2;;chr17:46621311..46621332,-!p8@HOXB2!0.91!9.51!HOXB2;;chr1:205649747..205649751,-!p10@ELK4,p4@SLC45A3!0.91!7.04!ELK4;;chr3:5021191..5021202,+!p3@BHLHE40!0.90!19.19!BHLHE40;;chr16:68119294..68119305,+!p6@NFATC3!0.90!9.51!NFATC3;;chr3:5021268..5021282,+!p4@BHLHE40!0.89!14.26!BHLHE40;;chr3:141150883..141150961,+!p6@ZBTB38!0.89!6.78!ZBTB38;;chr1:92949505..92949543,-!p5@GFI1!0.89!6.78!GFI1;;chr2:8822176..8822196,+!p1@ID2!0.88!983.50!ID2;;chr7:27135591..27135658,-!p1@HOXA1!0.87!12.68!HOXA1;;chr13:41635067..41635100,-!p5@ELF1!0.86!12.33!ELF1;;chr1:44679370..44679422,+!p3@DMAP1!0.86!8.36!DMAP1;;chr17:46622114..46622138,-!p4@HOXB2!0.85!9.51!HOXB2;;chr17:38465441..38465481,+!p6@RARA!0.84!7.48!RARA;;chrX:48644976..48644983,+!p2@GATA1!0.84!5.90!GATA1;;chr1:164528445..164528459,+!p2@PBX1!0.83!19.19!PBX1;;chr10:94449675..94449694,+!p2@HHEX!0.83!16.47!HHEX;;chr16:68119440..68119480,+!p4@NFATC3!0.83!9.95!NFATC3;;chr2:145271342..145271377,-!p5@ZEB2!0.83!5.81!ZEB2;;chr13:72441315..72441454,-!p1@DACH1!0.82!11.62!DACH1;;chr9:16870710..16870763,-!p1@BNC2!0.82!10.13!BNC2;;chr1:204042275..204042286,+!p4@SOX13!0.82!9.16!SOX13;;chr12:54694738..54694749,-!p5@NFE2!0.82!5.55!NFE2;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.77!HOXB2;;chr9:16870659..16870675,-!p2@BNC2!0.81!6.87!BNC2;;chr1:47697539..47697573,-!p3@TAL1!0.81!5.46!TAL1;;chr3:128207349..128207386,-!p3@GATA2!0.81!5.46!GATA2;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.46!ATXN7;;chr7:77428066..77428132,+!p2@PHTF2!0.80!37.33!PHTF2;;chr6:28317685..28317761,+!p1@ZKSCAN3!0.80!29.23!ZKSCAN3;;chr1:47696918..47696935,-!p6@TAL1!0.80!5.37!TAL1;;chr1:47697881..47697910,-!p4@TAL1!0.80!5.37!TAL1;;chr19:52074502..52074587,+!p1@ZNF175!0.79!20.34!ZNF175;;chr17:46655704..46655718,-!p2@HOXB4!0.79!7.92!HOXB4;;chr15:37390482..37390572,-!p7@MEIS2!0.79!7.31!MEIS2;;chr1:93812261..93812303,+!p2@DR1!0.79!6.43!DR1;;chr3:5022254..5022271,+!p12@BHLHE40!0.79!5.19!BHLHE40;;chrX:48645010..48645015,+!p3@GATA1!0.79!5.19!GATA1;;chr19:13213465..13213478,-!p7@LYL1!0.79!5.11!LYL1;;chr4:106068026..106068084,+!p1@TET2!0.78!49.84!TET2;;chr20:46130619..46130664,+!p1@NCOA3!0.77!146.51!NCOA3;;chr16:67063211..67063240,+!p2@CBFB!0.77!25.45!CBFB;;chr15:37392616..37392638,-!p2@MEIS2!0.76!16.29!MEIS2;;chr1:204042723..204042784,+!p3@SOX13!0.76!8.28!SOX13;;chr2:192015750..192015793,-!p2@STAT4!0.76!6.60!STAT4;;chr17:46622440..46622477,-!p5@HOXB2!0.76!5.46!HOXB2;;chr12:124968655..124968666,-!p48@NCOR2!0.76!4.75!NCOR2;;chr20:46130672..46130686,+!p2@NCOA3!0.75!22.54!NCOA3;;chr9:130954041..130954121,-!p2@CIZ1!0.75!22.10!CIZ1;;chr5:139487608..139487663,+!p3@PURA!0.75!10.57!PURA;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.75!8.19!ELK4;;chr7:127032114..127032163,-!p2@ZNF800!0.75!7.13!ZNF800;;chr11:47399947..47399961,-!p3@SPI1!0.75!4.67!SPI1;;chr19:13213634..13213645,-!p8@LYL1!0.75!4.67!LYL1;;chr19:13213954..13214021,-!p4@LYL1!0.75!4.58!LYL1;;chr20:46130827..46130838,+!p8@NCOA3!0.75!4.58!NCOA3;;chr19:4067174..4067200,-!p9@ZBTB7A!0.74!5.55!ZBTB7A;;chr2:48541789..48541874,+!p1@FOXN2!0.73!110.94!FOXN2;;chr9:117150254..117150271,-!p1@AKNA!0.73!12.94!AKNA;;chr17:46675420..46675465,-!p3@HOXB6!0.73!5.19!HOXB6;;chr11:47237922..47237964,+!p4@DDB2!0.73!5.19!DDB2;;chr1:92952473..92952489,-!p3@GFI1!0.73!4.40!GFI1;;chr6:15246261..15246312,+!p1@JARID2!0.72!117.54!JARID2;;chr6:42419649..42419673,-!p3@TRERF1!0.72!7.84!TRERF1;;chr16:68119250..68119293,+!p2@NFATC3!0.71!36.45!NFATC3;;chr3:114866084..114866118,-!p2@ZBTB20!0.71!16.55!ZBTB20;;chr1:164528384..164528409,+!p3@PBX1!0.71!14.18!PBX1;;chr16:3313791..3313834,+!p2@ZNF263!0.71!9.95!ZNF263;;chr19:38085768..38085821,+!p1@ZNF540!0.71!6.52!ZNF540;;chr3:5022174..5022207,+!p8@BHLHE40!0.71!5.02!BHLHE40;;chr1:158985553..158985574,+!p14@IFI16!0.71!4.14!IFI16;;chr7:17338239..17338262,+!p2@AHR!0.70!34.07!AHR;;chr19:36391434..36391450,-!p1@NFKBID!0.70!8.54!NFKBID;;chr19:4066890..4066903,-!p6@ZBTB7A!0.70!6.78!ZBTB7A;;chr16:68120508..68120520,+!p9@NFATC3!0.70!3.96!NFATC3;;chr18:77160282..77160343,+!p2@NFATC1!0.69!27.74!NFATC1;;chr17:46655730..46655791,-!p1@HOXB4!0.69!10.65!HOXB4;;chr17:38465413..38465438,+!p5@RARA!0.69!6.60!RARA;;chr16:88519669..88519726,+!p1@ZFPM1!0.68!39.18!ZFPM1;;chr2:145275162..145275202,-!p2@ZEB2!0.68!25.53!ZEB2;;chr16:79634595..79634620,-!p2@MAF!0.68!7.48!MAF;;chr2:231084659..231084721,-!p1@SP110!0.67!99.14!SP110;;chrX:101186981..101187030,-!p1@ZMAT1!0.67!13.47!ZMAT1;;chr10:94449649..94449664,+!p3@HHEX!0.67!5.72!HHEX;;chr15:37392094..37392116,-!p6@MEIS2!0.67!4.75!MEIS2;;chr1:47691303..47691319,-!p5@TAL1!0.67!3.70!TAL1;;chr21:36260980..36261011,-!p1@RUNX1!0.66!120.80!RUNX1;;chr7:137686791..137686821,-!p1@CREB3L2!0.66!120.45!CREB3L2;;chr10:51572408..51572454,+!p3@NCOA4!0.66!24.13!NCOA4;;chr2:25564750..25564807,-!p1@DNMT3A!0.66!15.41!DNMT3A;;chr15:37391271..37391376,-!p5@MEIS2!0.66!7.22!MEIS2;;chr6:144385698..144385742,-!p2@PLAGL1!0.66!4.49!PLAGL1;;chr21:36421401..36421414,-!p16@RUNX1!0.66!3.61!RUNX1;;chr2:61108695..61108753,+!p1@REL!0.65!27.91!REL;;chr11:65687362..65687436,+!p3@DRAP1!0.65!18.23!DRAP1;;chr17:38474489..38474548,+!p1@RARA!0.64!126.26!RARA;;chr19:35759824..35759891,+!p1@USF2!0.64!123.36!USF2;;chr18:77155922..77155939,+!p1@NFATC1!0.64!10.48!NFATC1;;chr19:35455110..35455149,-!p1@ZNF792!0.64!7.22!ZNF792;;chr9:116638634..116638664,+!p2@ZNF618!0.64!7.13!ZNF618;;chr7:50343895..50343936,+!p5@IKZF1!0.64!3.35!IKZF1;;chr7:50344144..50344157,+!p6@IKZF1!0.64!3.35!IKZF1;;chr17:46655672..46655697,-!p3@HOXB4!0.64!3.35!HOXB4;;chr6:21593973..21593988,+!p1@SOX4!0.63!140.88!SOX4;;chr7:128577972..128578047,+!p1@IRF5!0.63!5.55!IRF5;;chr8:60031762..60031803,-!p3@TOX!0.63!5.02!TOX;;chr19:18391615..18391637,-!p5@JUND!0.63!4.49!JUND;;chr12:52431016..52431071,+!p4@NR4A1!0.63!3.96!NR4A1;;chr19:13213399..13213414,-!p6@LYL1!0.63!3.26!LYL1;;chr12:11802753..11802834,+!p2@ETV6!0.62!18.40!ETV6;;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor1.CNhs12566.11563-120D6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11563-120D6 | |id=FF:11563-120D6 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0000261 | |is_a=EFO:0002091;;FF:0000210;;FF:0000261 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12566 | |||
|library_id_phase_based=2:CNhs12566 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11563 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11563 | |||
|name=Mast cell, donor1 | |name=Mast cell, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12566,LSID917,release011,COMPLETED | |profile_hcage=CNhs12566,LSID917,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 79: | ||
|rna_weight_ug=7.77336 | |rna_weight_ug=7.77336 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 101: | ||
|top_motifs=GATA6:2.89139434134;ALX1:2.09814598283;CRX:1.75849089813;PPARG:1.50742726361;ELF1,2,4:1.37310393388;IKZF2:1.36591737711;SREBF1,2:1.35192251168;HOX{A5,B5}:1.21136575867;RUNX1..3:1.20986102934;SPI1:1.1107470929;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.06942221837;RXR{A,B,G}:1.04151332169;EGR1..3:1.03754461523;SPIB:1.00405547019;SPZ1:0.907799753683;NFY{A,B,C}:0.87136885875;YY1:0.852057791645;MYB:0.829953978917;TGIF1:0.76386890687;FOX{I1,J2}:0.759906652816;ZBTB16:0.742597142756;ELK1,4_GABP{A,B1}:0.694245950598;ESRRA:0.683878351015;NR1H4:0.669803211093;HBP1_HMGB_SSRP1_UBTF:0.616277568657;DMAP1_NCOR{1,2}_SMARC:0.6116373501;TLX2:0.606536940039;PAX2:0.591274996607;PBX1:0.58663319161;FOXP3:0.565738716959;IRF1,2:0.546317740078;TFAP4:0.540168585096;PAX4:0.532512335574;ETS1,2:0.527607644293;DBP:0.513211729174;EN1,2:0.504270164018;ONECUT1,2:0.48801755154;NANOG{mouse}:0.467943946296;RXRA_VDR{dimer}:0.451913630051;XBP1:0.425018038942;SMAD1..7,9:0.423679457434;NHLH1,2:0.40565734192;E2F1..5:0.375170025251;RREB1:0.355235524227;ARID5B:0.333253413672;EVI1:0.33163547064;HNF4A_NR2F1,2:0.328256299851;BREu{core}:0.271858783674;ZNF238:0.261314116825;FOXD3:0.261189888877;STAT1,3:0.258249163493;NKX3-2:0.25236060384;FOX{F1,F2,J1}:0.225975247895;CUX2:0.217436024263;FOXA2:0.206122234401;LHX3,4:0.163099739066;PAX5:0.153893699547;NRF1:0.142428645477;TOPORS:0.132963609947;FOXM1:0.121844093663;FOXP1:0.11708549987;POU5F1:0.113076882798;HOXA9_MEIS1:0.106884241419;ZFP161:0.104712195435;AR:0.0940749296295;POU1F1:0.0858625464095;CDX1,2,4:0.0838202329118;GZF1:0.0833704592949;BPTF:0.0799222709532;EP300:0.0563412540359;PITX1..3:0.0243172470385;NKX6-1,2:0.0186160220271;ZNF148:0.015831021208;PAX6:0.0115855986695;SOX{8,9,10}:0.000892481494705;NKX2-2,8:0.000177475137577;IRF7:-0.0260475952832;PRRX1,2:-0.0312278470258;TFDP1:-0.0359519038879;MYFfamily:-0.0547215248494;TFCP2:-0.0573635732698;ZNF143:-0.0602945470002;TFAP2{A,C}:-0.0613461650931;ZNF384:-0.0672785472024;NR6A1:-0.0930824519532;FOSL2:-0.11008684023;NFKB1_REL_RELA:-0.116002326418;GATA4:-0.125568777152;ATF4:-0.126649440703;RFX2..5_RFXANK_RFXAP:-0.167212434397;GLI1..3:-0.167248563308;CREB1:-0.169942618568;HAND1,2:-0.173096471171;NFE2L1:-0.19874122994;POU2F1..3:-0.201469669398;T:-0.205085068581;ATF5_CREB3:-0.224401079776;NFE2:-0.225122877136;OCT4_SOX2{dimer}:-0.225123704483;FOXO1,3,4:-0.226092264969;REST:-0.229709099066;NR5A1,2:-0.23354403588;FOXN1:-0.250254123855;TFAP2B:-0.25279531898;XCPE1{core}:-0.256258359501;NKX3-1:-0.26971847839;MTF1:-0.277394699943;RORA:-0.286394730523;NFE2L2:-0.297018385059;bHLH_family:-0.298091072425;NKX2-3_NKX2-5:-0.303505164391;HMGA1,2:-0.313274747024;FOXQ1:-0.3210814771;NR3C1:-0.330723205623;PAX8:-0.333201578112;FOS_FOS{B,L1}_JUN{B,D}:-0.3400207786;PRDM1:-0.348426376828;MAFB:-0.378546462712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381086898325;NFATC1..3:-0.382413923199;PAX3,7:-0.382633723251;MEF2{A,B,C,D}:-0.386642100476;ZIC1..3:-0.387332503468;AIRE:-0.390366694354;SOX17:-0.394208800968;POU6F1:-0.409492673396;BACH2:-0.415763000634;FOX{D1,D2}:-0.418311991908;HOX{A6,A7,B6,B7}:-0.419149675299;HLF:-0.438645470435;STAT5{A,B}:-0.470029213497;ADNP_IRX_SIX_ZHX:-0.491704674677;ZBTB6:-0.492011984793;ZEB1:-0.492737029581;ESR1:-0.493336435321;ATF2:-0.497160920144;MAZ:-0.505152240589;HIC1:-0.505298207235;SOX5:-0.512613180958;GTF2I:-0.529838036878;HMX1:-0.546382939297;SNAI1..3:-0.551387932203;HNF1A:-0.553899669959;EBF1:-0.55588368351;SP1:-0.620030183782;PAX1,9:-0.647833912032;PATZ1:-0.665346961302;TEF:-0.670641885835;MYOD1:-0.675067048849;UFEwm:-0.727390200016;IKZF1:-0.735750128002;GFI1:-0.747360295112;HOX{A4,D4}:-0.767556721095;ZNF423:-0.794673756655;MED-1{core}:-0.802128565219;TP53:-0.877704382732;MZF1:-0.877828990235;NANOG:-0.909518035545;AHR_ARNT_ARNT2:-0.921521745785;SOX2:-0.930715148521;TAL1_TCF{3,4,12}:-0.933382269349;VSX1,2:-0.95065208478;STAT2,4,6:-0.974171837413;HES1:-0.978716346114;RBPJ:-0.987156692897;MTE{core}:-1.00768585798;NFIL3:-1.01314814917;TEAD1:-1.05293205723;HIF1A:-1.0539124518;SRF:-1.05677725999;KLF4:-1.06891322534;RFX1:-1.11045093528;CEBPA,B_DDIT3:-1.12779192214;LEF1_TCF7_TCF7L1,2:-1.17949947234;NFIX:-1.18597275432;GTF2A1,2:-1.19826850843;TLX1..3_NFIC{dimer}:-1.26853384205;JUN:-1.27438967998;LMO2:-1.28913802348;HSF1,2:-1.33903157862;ATF6:-1.37445833356;MYBL2:-1.39554694041;ALX4:-1.39746085608;POU3F1..4:-1.42416908171;GCM1,2:-1.448750051;NKX2-1,4:-1.48788470718;TBP:-1.49364403937;CDC5L:-1.61366577441;TBX4,5:-1.62789104293;GFI1B:-1.79798372753;FOXL1:-1.8517421146;PDX1:-2.04904107229 | |top_motifs=GATA6:2.89139434134;ALX1:2.09814598283;CRX:1.75849089813;PPARG:1.50742726361;ELF1,2,4:1.37310393388;IKZF2:1.36591737711;SREBF1,2:1.35192251168;HOX{A5,B5}:1.21136575867;RUNX1..3:1.20986102934;SPI1:1.1107470929;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.06942221837;RXR{A,B,G}:1.04151332169;EGR1..3:1.03754461523;SPIB:1.00405547019;SPZ1:0.907799753683;NFY{A,B,C}:0.87136885875;YY1:0.852057791645;MYB:0.829953978917;TGIF1:0.76386890687;FOX{I1,J2}:0.759906652816;ZBTB16:0.742597142756;ELK1,4_GABP{A,B1}:0.694245950598;ESRRA:0.683878351015;NR1H4:0.669803211093;HBP1_HMGB_SSRP1_UBTF:0.616277568657;DMAP1_NCOR{1,2}_SMARC:0.6116373501;TLX2:0.606536940039;PAX2:0.591274996607;PBX1:0.58663319161;FOXP3:0.565738716959;IRF1,2:0.546317740078;TFAP4:0.540168585096;PAX4:0.532512335574;ETS1,2:0.527607644293;DBP:0.513211729174;EN1,2:0.504270164018;ONECUT1,2:0.48801755154;NANOG{mouse}:0.467943946296;RXRA_VDR{dimer}:0.451913630051;XBP1:0.425018038942;SMAD1..7,9:0.423679457434;NHLH1,2:0.40565734192;E2F1..5:0.375170025251;RREB1:0.355235524227;ARID5B:0.333253413672;EVI1:0.33163547064;HNF4A_NR2F1,2:0.328256299851;BREu{core}:0.271858783674;ZNF238:0.261314116825;FOXD3:0.261189888877;STAT1,3:0.258249163493;NKX3-2:0.25236060384;FOX{F1,F2,J1}:0.225975247895;CUX2:0.217436024263;FOXA2:0.206122234401;LHX3,4:0.163099739066;PAX5:0.153893699547;NRF1:0.142428645477;TOPORS:0.132963609947;FOXM1:0.121844093663;FOXP1:0.11708549987;POU5F1:0.113076882798;HOXA9_MEIS1:0.106884241419;ZFP161:0.104712195435;AR:0.0940749296295;POU1F1:0.0858625464095;CDX1,2,4:0.0838202329118;GZF1:0.0833704592949;BPTF:0.0799222709532;EP300:0.0563412540359;PITX1..3:0.0243172470385;NKX6-1,2:0.0186160220271;ZNF148:0.015831021208;PAX6:0.0115855986695;SOX{8,9,10}:0.000892481494705;NKX2-2,8:0.000177475137577;IRF7:-0.0260475952832;PRRX1,2:-0.0312278470258;TFDP1:-0.0359519038879;MYFfamily:-0.0547215248494;TFCP2:-0.0573635732698;ZNF143:-0.0602945470002;TFAP2{A,C}:-0.0613461650931;ZNF384:-0.0672785472024;NR6A1:-0.0930824519532;FOSL2:-0.11008684023;NFKB1_REL_RELA:-0.116002326418;GATA4:-0.125568777152;ATF4:-0.126649440703;RFX2..5_RFXANK_RFXAP:-0.167212434397;GLI1..3:-0.167248563308;CREB1:-0.169942618568;HAND1,2:-0.173096471171;NFE2L1:-0.19874122994;POU2F1..3:-0.201469669398;T:-0.205085068581;ATF5_CREB3:-0.224401079776;NFE2:-0.225122877136;OCT4_SOX2{dimer}:-0.225123704483;FOXO1,3,4:-0.226092264969;REST:-0.229709099066;NR5A1,2:-0.23354403588;FOXN1:-0.250254123855;TFAP2B:-0.25279531898;XCPE1{core}:-0.256258359501;NKX3-1:-0.26971847839;MTF1:-0.277394699943;RORA:-0.286394730523;NFE2L2:-0.297018385059;bHLH_family:-0.298091072425;NKX2-3_NKX2-5:-0.303505164391;HMGA1,2:-0.313274747024;FOXQ1:-0.3210814771;NR3C1:-0.330723205623;PAX8:-0.333201578112;FOS_FOS{B,L1}_JUN{B,D}:-0.3400207786;PRDM1:-0.348426376828;MAFB:-0.378546462712;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.381086898325;NFATC1..3:-0.382413923199;PAX3,7:-0.382633723251;MEF2{A,B,C,D}:-0.386642100476;ZIC1..3:-0.387332503468;AIRE:-0.390366694354;SOX17:-0.394208800968;POU6F1:-0.409492673396;BACH2:-0.415763000634;FOX{D1,D2}:-0.418311991908;HOX{A6,A7,B6,B7}:-0.419149675299;HLF:-0.438645470435;STAT5{A,B}:-0.470029213497;ADNP_IRX_SIX_ZHX:-0.491704674677;ZBTB6:-0.492011984793;ZEB1:-0.492737029581;ESR1:-0.493336435321;ATF2:-0.497160920144;MAZ:-0.505152240589;HIC1:-0.505298207235;SOX5:-0.512613180958;GTF2I:-0.529838036878;HMX1:-0.546382939297;SNAI1..3:-0.551387932203;HNF1A:-0.553899669959;EBF1:-0.55588368351;SP1:-0.620030183782;PAX1,9:-0.647833912032;PATZ1:-0.665346961302;TEF:-0.670641885835;MYOD1:-0.675067048849;UFEwm:-0.727390200016;IKZF1:-0.735750128002;GFI1:-0.747360295112;HOX{A4,D4}:-0.767556721095;ZNF423:-0.794673756655;MED-1{core}:-0.802128565219;TP53:-0.877704382732;MZF1:-0.877828990235;NANOG:-0.909518035545;AHR_ARNT_ARNT2:-0.921521745785;SOX2:-0.930715148521;TAL1_TCF{3,4,12}:-0.933382269349;VSX1,2:-0.95065208478;STAT2,4,6:-0.974171837413;HES1:-0.978716346114;RBPJ:-0.987156692897;MTE{core}:-1.00768585798;NFIL3:-1.01314814917;TEAD1:-1.05293205723;HIF1A:-1.0539124518;SRF:-1.05677725999;KLF4:-1.06891322534;RFX1:-1.11045093528;CEBPA,B_DDIT3:-1.12779192214;LEF1_TCF7_TCF7L1,2:-1.17949947234;NFIX:-1.18597275432;GTF2A1,2:-1.19826850843;TLX1..3_NFIC{dimer}:-1.26853384205;JUN:-1.27438967998;LMO2:-1.28913802348;HSF1,2:-1.33903157862;ATF6:-1.37445833356;MYBL2:-1.39554694041;ALX4:-1.39746085608;POU3F1..4:-1.42416908171;GCM1,2:-1.448750051;NKX2-1,4:-1.48788470718;TBP:-1.49364403937;CDC5L:-1.61366577441;TBX4,5:-1.62789104293;GFI1B:-1.79798372753;FOXL1:-1.8517421146;PDX1:-2.04904107229 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11563-120D6;search_select_hide=table117:FF:11563-120D6 | |||
}} | }} | ||
Latest revision as of 18:09, 4 June 2020
| Name: | Mast cell, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12566 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12566
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12566
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.714 |
| 10 | 10 | 0.0581 |
| 100 | 100 | 0.301 |
| 101 | 101 | 0.349 |
| 102 | 102 | 0.0725 |
| 103 | 103 | 0.11 |
| 104 | 104 | 0.806 |
| 105 | 105 | 0.789 |
| 106 | 106 | 0.611 |
| 107 | 107 | 0.488 |
| 108 | 108 | 0.0961 |
| 109 | 109 | 0.00516 |
| 11 | 11 | 0.287 |
| 110 | 110 | 0.599 |
| 111 | 111 | 0.231 |
| 112 | 112 | 0.0922 |
| 113 | 113 | 0.0782 |
| 114 | 114 | 0.0386 |
| 115 | 115 | 0.845 |
| 116 | 116 | 0.628 |
| 117 | 117 | 0.00309 |
| 118 | 118 | 0.285 |
| 119 | 119 | 0.895 |
| 12 | 12 | 0.583 |
| 120 | 120 | 0.768 |
| 121 | 121 | 0.214 |
| 122 | 122 | 0.401 |
| 123 | 123 | 0.182 |
| 124 | 124 | 0.848 |
| 125 | 125 | 0.611 |
| 126 | 126 | 0.458 |
| 127 | 127 | 0.345 |
| 128 | 128 | 0.769 |
| 129 | 129 | 0.304 |
| 13 | 13 | 0.775 |
| 130 | 130 | 0.255 |
| 131 | 131 | 0.62 |
| 132 | 132 | 0.705 |
| 133 | 133 | 0.835 |
| 134 | 134 | 0.285 |
| 135 | 135 | 0.0323 |
| 136 | 136 | 0.0672 |
| 137 | 137 | 0.0761 |
| 138 | 138 | 0.19 |
| 139 | 139 | 0.477 |
| 14 | 14 | 0.27 |
| 140 | 140 | 0.272 |
| 141 | 141 | 0.299 |
| 142 | 142 | 0.419 |
| 143 | 143 | 0.588 |
| 144 | 144 | 0.121 |
| 145 | 145 | 0.288 |
| 146 | 146 | 0.857 |
| 147 | 147 | 0.0671 |
| 148 | 148 | 0.542 |
| 149 | 149 | 0.398 |
| 15 | 15 | 0.129 |
| 150 | 150 | 0.184 |
| 151 | 151 | 0.44 |
| 152 | 152 | 0.673 |
| 153 | 153 | 0.115 |
| 154 | 154 | 0.785 |
| 155 | 155 | 0.0103 |
| 156 | 156 | 0.921 |
| 157 | 157 | 0.802 |
| 158 | 158 | 0.164 |
| 159 | 159 | 0.986 |
| 16 | 16 | 0.623 |
| 160 | 160 | 0.141 |
| 161 | 161 | 0.797 |
| 162 | 162 | 0.937 |
| 163 | 163 | 0.99 |
| 164 | 164 | 0.337 |
| 165 | 165 | 0.511 |
| 166 | 166 | 0.00982 |
| 167 | 167 | 0.588 |
| 168 | 168 | 0.46 |
| 169 | 169 | 0.881 |
| 17 | 17 | 0.919 |
| 18 | 18 | 0.405 |
| 19 | 19 | 0.789 |
| 2 | 2 | 0.383 |
| 20 | 20 | 0.572 |
| 21 | 21 | 0.0173 |
| 22 | 22 | 0.213 |
| 23 | 23 | 0.408 |
| 24 | 24 | 0.0821 |
| 25 | 25 | 0.32 |
| 26 | 26 | 0.481 |
| 27 | 27 | 0.395 |
| 28 | 28 | 0.199 |
| 29 | 29 | 0.154 |
| 3 | 3 | 0.649 |
| 30 | 30 | 0.137 |
| 31 | 31 | 0.803 |
| 32 | 32 | 0.0863 |
| 33 | 33 | 0.644 |
| 34 | 34 | 0.958 |
| 35 | 35 | 0.749 |
| 36 | 36 | 0.555 |
| 37 | 37 | 0.165 |
| 38 | 38 | 0.367 |
| 39 | 39 | 0.348 |
| 4 | 4 | 0.868 |
| 40 | 40 | 0.228 |
| 41 | 41 | 0.951 |
| 42 | 42 | 0.618 |
| 43 | 43 | 0.741 |
| 44 | 44 | 0.652 |
| 45 | 45 | 0.976 |
| 46 | 46 | 0.604 |
| 47 | 47 | 0.299 |
| 48 | 48 | 0.345 |
| 49 | 49 | 0.7 |
| 5 | 5 | 0.885 |
| 50 | 50 | 0.483 |
| 51 | 51 | 0.341 |
| 52 | 52 | 0.432 |
| 53 | 53 | 0.489 |
| 54 | 54 | 0.365 |
| 55 | 55 | 0.887 |
| 56 | 56 | 0.563 |
| 57 | 57 | 0.985 |
| 58 | 58 | 0.017 |
| 59 | 59 | 0.628 |
| 6 | 6 | 0.619 |
| 60 | 60 | 0.958 |
| 61 | 61 | 0.0999 |
| 62 | 62 | 0.047 |
| 63 | 63 | 0.605 |
| 64 | 64 | 0.724 |
| 65 | 65 | 0.939 |
| 66 | 66 | 0.276 |
| 67 | 67 | 0.743 |
| 68 | 68 | 0.339 |
| 69 | 69 | 0.693 |
| 7 | 7 | 0.577 |
| 70 | 70 | 0.729 |
| 71 | 71 | 0.335 |
| 72 | 72 | 0.0354 |
| 73 | 73 | 0.198 |
| 74 | 74 | 0.121 |
| 75 | 75 | 0.113 |
| 76 | 76 | 0.821 |
| 77 | 77 | 0.224 |
| 78 | 78 | 0.00907 |
| 79 | 79 | 0.806 |
| 8 | 8 | 0.972 |
| 80 | 80 | 0.707 |
| 81 | 81 | 0.68 |
| 82 | 82 | 0.582 |
| 83 | 83 | 0.839 |
| 84 | 84 | 0.923 |
| 85 | 85 | 0.711 |
| 86 | 86 | 0.193 |
| 87 | 87 | 0.0833 |
| 88 | 88 | 0.211 |
| 89 | 89 | 0.247 |
| 9 | 9 | 0.891 |
| 90 | 90 | 0.161 |
| 91 | 91 | 0.995 |
| 92 | 92 | 0.791 |
| 93 | 93 | 0.299 |
| 94 | 94 | 0.198 |
| 95 | 95 | 9.01286e-5 |
| 96 | 96 | 0.415 |
| 97 | 97 | 0.485 |
| 98 | 98 | 0.495 |
| 99 | 99 | 0.336 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12566
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000261 mast cell- heparinase treated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
