FF:11567-120E1: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004803 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004803 | |||
|accession_numbers=CAGE;DRX008334;DRR009206;DRZ000631;DRZ002016;DRZ011981;DRZ013366 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037126;DRR041492;DRZ007134 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097 | ||
Line 7: | Line 11: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.29!1944.13!GATA2;;chr19:45971246..45971265,+!p1@FOSB!2.85!12057.29!FOSB;;chr14:75745523..75745537,+!p1@FOS!2.14!15015.91!FOS;;chr2:157189180..157189290,-!p1@NR4A2!2.10!612.53!NR4A2;;chr12:52445218..52445237,+!p1@NR4A1!2.08!1418.33!NR4A1;;chr14:35872453..35872485,-!p2@NFKBIA!1.99!227.49!NFKBIA;;chr18:77155922..77155939,+!p1@NFATC1!1.97!240.62!NFATC1;;chr3:128206762..128206781,-!p2@GATA2!1.94!504.09!GATA2;;chr21:39870339..39870443,-!p1@ERG!1.89!76.00!ERG;;chr1:59249688..59249703,-!p3@JUN!1.88!422.53!JUN;;chr19:45971060..45971122,+!p3@FOSB!1.88!74.86!FOSB;;chr14:75988771..75988826,+!p1@BATF!1.87!95.19!BATF;;chr14:75746722..75746777,+!p2@FOS!1.87!93.17!FOS;;chr8:81397820..81397836,+!p2@ZBTB10!1.85!86.60!ZBTB10;;chr9:3525727..3525828,-!p2@RFX3!1.83!166.14!RFX3;;chr20:50159198..50159299,-!p1@NFATC2!1.82!92.54!NFATC2;;chr6:135502501..135502546,+!p1@MYB!1.82!77.26!MYB;;chr3:128205876..128205904,-!p4@GATA2!1.82!65.77!GATA2;;chr17:38497662..38497713,+!p4@RARA!1.80!71.83!RARA;;chr9:102584159..102584174,+!p2@NR4A3!1.78!104.65!NR4A3;;chr1:92951607..92951661,-!p1@GFI1!1.78!59.71!GFI1;;chr2:157189617..157189667,-!p4@NR4A2!1.78!59.59!NR4A2;;chr7:28725740..28725778,+!p1@CREB5!1.77!486.92!CREB5;;chr19:54058073..54058088,+!p1@ZNF331!1.76!56.18!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.75!149.60!EGR3;;chrX:48644984..48645005,+!p1@GATA1!1.73!53.27!GATA1;;chr19:18391615..18391637,-!p5@JUND!1.71!65.65!JUND;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.24!IKZF1;;chr19:13213511..13213545,-!p2@LYL1!1.69!52.39!LYL1;;chr1:25256756..25256774,-!p1@RUNX3!1.68!85.59!RUNX3;;chr3:69788576..69788648,+!p1@MITF!1.66!227.87!MITF;;chr2:145277640..145277771,-!p1@ZEB2!1.65!559.13!ZEB2;;chr3:63953435..63953499,+!p1@ATXN7!1.65!43.30!ATXN7;;chr14:35873947..35873965,-!p1@NFKBIA!1.64!2553.25!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.63!270.79!REL;;chr7:50344251..50344288,+!p3@IKZF1!1.60!38.76!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.60!38.38!IKZF1;;chr2:145271342..145271377,-!p5@ZEB2!1.59!37.62!ZEB2;;chrX:106960285..106960299,-!p1@TSC22D3!1.57!918.54!TSC22D3;;chr19:36391434..36391450,-!p1@NFKBID!1.57!69.69!NFKBID;;chr7:138666053..138666146,-!p1@KIAA1549!1.56!139.88!KIAA1549;;chr19:45972701..45972774,+!p2@FOSB!1.55!47.09!FOSB;;chr12:124968706..124968748,-!p18@NCOR2!1.55!34.46!NCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.55!34.21!SPI1;;chr14:75988831..75988847,+!p2@BATF!1.55!34.09!BATF;;chr12:72056800..72056834,+!p1@THAP2!1.54!44.56!THAP2;;chr19:16435705..16435726,+!p3@KLF2!1.54!33.71!KLF2;;chr14:75746664..75746683,+!p7@FOS!1.54!33.58!FOS;;chr1:59249707..59249727,-!p1@JUN!1.53!1311.66!JUN;;chr1:204042233..204042249,+!p1@SOX13!1.53!198.33!SOX13;;chr8:81397876..81397898,+!p5@ZBTB10!1.53!38.50!ZBTB10;;chr1:59249732..59249749,-!p2@JUN!1.52!366.86!JUN;;chr1:47697881..47697910,-!p4@TAL1!1.52!32.19!TAL1;;chr3:39195037..39195069,-!p2@CSRNP1!1.51!187.22!CSRNP1;;chr7:28725715..28725727,+!p3@CREB5!1.51!36.86!CREB5;;chr14:75746340..75746368,+!p3@FOS!1.50!30.80!FOS;;chr19:16435625..16435682,+!p1@KLF2!1.49!918.54!KLF2;;chr10:104154246..104154347,+!p3@NFKB2!1.49!175.35!NFKB2;;chr3:128205779..128205797,-!p5@GATA2!1.49!30.05!GATA2;;chr3:39195075..39195088,-!p1@CSRNP1!1.48!175.22!CSRNP1;;chr10:35484053..35484076,+!p1@CREM!1.48!71.71!CREM;;chr12:52448420..52448460,+!p5@NR4A1!1.48!29.41!NR4A1;;chr1:47695003..47695042,-!p2@TAL1!1.48!29.29!TAL1;;chr10:3827389..3827408,-!p1@KLF6!1.46!2018.87!KLF6;;chr9:135854091..135854159,+!p1@GFI1B!1.45!27.39!GFI1B;;chr3:141150883..141150961,+!p6@ZBTB38!1.45!27.02!ZBTB38;;chr1:158985493..158985535,+!p4@IFI16!1.44!39.51!IFI16;;chr3:128205801..128205819,-!p6@GATA2!1.44!26.51!GATA2;;chr12:52448213..52448262,+!p6@NR4A1!1.44!26.38!NR4A1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.43!1278.71!NFKBIZ;;chr8:81397846..81397860,+!p3@ZBTB10!1.43!32.19!ZBTB10;;chr19:12902289..12902307,+!p1@JUNB!1.42!5567.17!JUNB;;chr2:157199008..157199023,-!p3@NR4A2!1.42!52.52!NR4A2;;chr8:123793988..123794016,+!p1@ZHX2!1.42!44.31!ZHX2;;chr14:75746705..75746720,+!p8@FOS!1.42!25.50!FOS;;chr13:41593425..41593480,-!p1@ELF1!1.41!152.63!ELF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.24!ZBED1;;chr19:54041669..54041697,+!p2@ZNF331!1.40!24.11!ZNF331;;chr4:103422499..103422632,+!p1@NFKB1!1.36!439.70!NFKB1;;chr9:110252035..110252057,-!p1@KLF4!1.36!340.73!KLF4;;chr19:16435735..16435773,+!p4@KLF2!1.35!21.59!KLF2;;chr19:18392422..18392440,-!p1@JUND!1.34!2745.52!JUND;;chr10:3827371..3827386,-!p2@KLF6!1.34!169.54!KLF6;;chr12:52430894..52430952,+!p3@NR4A1!1.34!39.39!NR4A1;;chr5:137801160..137801176,+!p1@EGR1!1.33!1934.54!EGR1;;chr2:208394817..208394834,+!p3@CREB1!1.33!79.79!CREB1;;chr12:52448338..52448401,+!p7@NR4A1!1.33!20.20!NR4A1;;chr6:15401104..15401166,+!p5@JARID2!1.32!19.95!JARID2;;chr2:157189317..157189325,-!p8@NR4A2!1.32!19.82!NR4A2;;chr19:6110474..6110551,-!p1@RFX2!1.31!115.39!RFX2;;chr11:128563948..128564003,+!p1@FLI1!1.30!223.95!FLI1;;chr9:102584128..102584144,+!p3@NR4A3!1.30!35.47!NR4A3;;chr16:30406101..30406114,+!p6@ZNF48!1.30!18.94!ZNF48;;chr19:13213555..13213568,-!p5@LYL1!1.30!18.94!LYL1;;chr10:3824125..3824146,-!p12@KLF6!1.29!18.56!KLF6;;chr2:178128250..178128293,-!p6@NFE2L2!1.28!44.56!NFE2L2;;chr12:52431016..52431071,+!p4@NR4A1!1.28!20.96!NR4A1;;chr10:35416142..35416169,+!p3@CREM!1.27!45.95!CREM;;chr10:35484090..35484104,+!p6@CREM!1.27!17.80!CREM;;chr12:52448151..52448200,+!p8@NR4A1!1.27!17.55!NR4A1;;chr14:75747296..75747329,+!p4@FOS!1.27!17.42!FOS;;chr2:208031542..208031595,-!p2@KLF7!1.26!119.55!KLF7;;chr1:151030536..151030549,+!p8@MLLT11!1.25!16.66!MLLT11;;chr19:45974146..45974170,+!p7@FOSB!1.24!16.41!FOSB;;chr18:22932080..22932170,-!p1@ZNF521!1.23!66.28!ZNF521;;chr9:102584262..102584276,+!p1@NR4A3!1.23!35.35!NR4A3;;chr6:135502408..135502459,+!p2@MYB!1.23!18.43!MYB;;chr7:17338266..17338282,+!p1@AHR!1.22!164.87!AHR;;chr3:5021113..5021180,+!p1@BHLHE40!1.21!1031.78!BHLHE40;;chr3:128207349..128207386,-!p3@GATA2!1.21!15.28!GATA2;;chr1:59249645..59249656,-!p4@JUN!1.19!36.23!JUN;;chr14:35873101..35873119,-!p6@NFKBIA!1.19!18.94!NFKBIA;;chr7:63505799..63505904,+!p1@ZNF727!1.19!14.52!ZNF727;;chr14:75747250..75747267,+!p5@FOS!1.19!14.52!FOS;;chr20:34359925..34359991,+!p1@PHF20!1.18!615.05!PHF20;;chr10:3827417..3827428,-!p3@KLF6!1.18!120.06!KLF6;;chr7:17338324..17338341,+!p3@AHR!1.18!46.71!AHR;;chr2:157186630..157186686,-!p6@NR4A2!1.18!14.14!NR4A2;;chr14:75746579..75746605,+!p9@FOS!1.18!14.01!FOS;;chr19:45504688..45504782,+!p1@RELB!1.17!82.18!RELB;;chr8:60031619..60031676,-!p1@TOX!1.17!29.79!TOX;;chr14:35872414..35872425,-!p7@NFKBIA!1.17!15.40!NFKBIA;;chr19:45972203..45972226,+!p5@FOSB!1.17!13.89!FOSB;;chr1:204042275..204042286,+!p4@SOX13!1.16!21.33!SOX13;;chr1:158985469..158985489,+!p7@IFI16!1.16!16.03!IFI16;;chr11:47399996..47400014,-!p4@SPI1!1.16!13.51!SPI1;;chr10:129535441..129535454,+!p1@FOXI2!1.16!13.38!FOXI2;;chr1:204042723..204042784,+!p3@SOX13!1.15!22.09!SOX13;;chr10:3824646..3824677,-!p9@KLF6!1.15!13.26!KLF6;;chr4:106068026..106068084,+!p1@TET2!1.14!114.38!TET2;;chr2:157186177..157186204,-!p14@NR4A2!1.14!12.88!NR4A2;;chr19:45972563..45972577,+!p17@FOSB!1.14!12.88!FOSB;;chr19:45252008..45252024,+!p2@BCL3!1.13!41.41!BCL3;;chr4:103422471..103422495,+!p2@NFKB1!1.13!34.72!NFKB1;;chr19:18391708..18391737,-!p7@JUND!1.13!19.19!JUND;;chr1:37940170..37940190,+!p1@ZC3H12A!1.12!149.22!ZC3H12A;;chr14:35872962..35873025,-!p3@NFKBIA!1.12!30.55!NFKBIA;;chr14:64970670..64970712,-!p3@ZBTB25!1.12!26.26!ZBTB25;;chr2:145274900..145274934,-!p4@ZEB2!1.11!72.84!ZEB2;;chr19:45973107..45973118,+!p15@FOSB!1.11!11.99!FOSB;;chr2:61108650..61108687,+!p2@REL!1.10!57.19!REL;;chr2:61108771..61108789,+!p4@REL!1.10!17.55!REL;;chr12:72056773..72056796,+!p3@THAP2!1.10!15.02!THAP2;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.61!CREB3L2;;chr14:75746687..75746702,+!p10@FOS!1.10!11.49!FOS;;chr10:104155480..104155534,+!p2@NFKB2!1.09!74.10!NFKB2;;chr12:26277956..26277980,-!p1@BHLHE41!1.09!40.90!BHLHE41;;chr17:38474489..38474548,+!p1@RARA!1.08!347.29!RARA;;chr15:37390850..37390909,-!p3@MEIS2!1.08!21.84!MEIS2;;chr19:42788611..42788634,+!p2@CIC!1.08!17.55!CIC;;chr19:47616992..47617011,-!p4@ZC3H4!1.07!23.23!ZC3H4;;chr4:81118647..81118666,+!p1@PRDM8!1.07!14.39!PRDM8;;chr2:157186310..157186350,-!p10@NR4A2!1.07!10.86!NR4A2;;chr14:75746624..75746635,+!p12@FOS!1.07!10.86!FOS;;chr11:47400045..47400060,-!p6@SPI1!1.07!10.86!SPI1;;chr14:35874125..35874149,-!p11@NFKBIA!1.07!10.86!NFKBIA;;chr14:64969951..64969972,+!p27@ZBTB1!1.07!10.86!ZBTB1;;chr17:74137321..74137337,-!p1@FOXJ1!1.07!10.73!FOXJ1;;chr19:45974005..45974026,+!p11@FOSB!1.06!10.60!FOSB;;chr14:35874077..35874091,-!p8@NFKBIA!1.06!10.35!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.05!101.75!NFKBIE;;chr1:47697539..47697573,-!p3@TAL1!1.05!10.10!TAL1;;chr19:11959532..11959593,+!p1@ZNF439!1.04!38.88!ZNF439;;chr2:157198916..157198978,-!p2@NR4A2!1.04!35.35!NR4A2;;chr6:15246200..15246214,+!p2@JARID2!1.04!27.77!JARID2;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!1.04!16.66!ELK4;;chr10:3824332..3824425,-!p4@KLF6!1.04!16.41!KLF6;;chr18:3449330..3449344,+!p10@TGIF1!1.04!13.26!TGIF1;;chr6:157100031..157100112,+!p2@ARID1B!1.03!53.53!ARID1B;;chr4:87857433..87857472,+!p9@AFF1!1.03!17.42!AFF1;;chr19:13213662..13213686,-!p1@LYL1!1.03!14.39!LYL1;;chr2:28615716..28615733,+!p1@FOSL2!1.02!454.09!FOSL2;;chr21:36421535..36421610,-!p2@RUNX1!1.02!34.09!RUNX1;;chr19:42788636..42788660,+!p1@CIC!1.02!16.03!CIC;;chr9:102584241..102584261,+!p4@NR4A3!1.02!14.77!NR4A3;;chr3:5021026..5021035,+!p5@BHLHE40!1.02!11.74!BHLHE40;;chr8:60031762..60031803,-!p3@TOX!1.01!13.51!TOX;;chr3:39195139..39195150,-!p3@CSRNP1!1.01!11.99!CSRNP1;;chr2:157189101..157189111,-!p15@NR4A2!1.01!9.34!NR4A2;;chr7:99680193..99680204,-!p2@ZNF3!1.01!9.22!ZNF3;;chr16:31885093..31885165,+!p1@ZNF267!1.00!139.25!ZNF267;;chr19:11925071..11925113,+!p1@ZNF440!1.00!66.66!ZNF440;;chr1:47691303..47691319,-!p5@TAL1!1.00!9.09!TAL1;;chr7:17338239..17338262,+!p2@AHR!0.99!66.28!AHR;;chr10:64576105..64576133,-!p1@EGR2!0.99!18.43!EGR2;;chr7:137620684..137620711,-!p4@CRE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| |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.29!1944.13!GATA2;;chr19:45971246..45971265,+!p1@FOSB!2.85!12057.29!FOSB;;chr14:75745523..75745537,+!p1@FOS!2.14!15015.91!FOS;;chr2:157189180..157189290,-!p1@NR4A2!2.10!612.53!NR4A2;;chr12:52445218..52445237,+!p1@NR4A1!2.08!1418.33!NR4A1;;chr14:35872453..35872485,-!p2@NFKBIA!1.99!227.49!NFKBIA;;chr18:77155922..77155939,+!p1@NFATC1!1.97!240.62!NFATC1;;chr3:128206762..128206781,-!p2@GATA2!1.94!504.09!GATA2;;chr21:39870339..39870443,-!p1@ERG!1.89!76.00!ERG;;chr1:59249688..59249703,-!p3@JUN!1.88!422.53!JUN;;chr19:45971060..45971122,+!p3@FOSB!1.88!74.86!FOSB;;chr14:75988771..75988826,+!p1@BATF!1.87!95.19!BATF;;chr14:75746722..75746777,+!p2@FOS!1.87!93.17!FOS;;chr8:81397820..81397836,+!p2@ZBTB10!1.85!86.60!ZBTB10;;chr9:3525727..3525828,-!p2@RFX3!1.83!166.14!RFX3;;chr20:50159198..50159299,-!p1@NFATC2!1.82!92.54!NFATC2;;chr6:135502501..135502546,+!p1@MYB!1.82!77.26!MYB;;chr3:128205876..128205904,-!p4@GATA2!1.82!65.77!GATA2;;chr17:38497662..38497713,+!p4@RARA!1.80!71.83!RARA;;chr9:102584159..102584174,+!p2@NR4A3!1.78!104.65!NR4A3;;chr1:92951607..92951661,-!p1@GFI1!1.78!59.71!GFI1;;chr2:157189617..157189667,-!p4@NR4A2!1.78!59.59!NR4A2;;chr7:28725740..28725778,+!p1@CREB5!1.77!486.92!CREB5;;chr19:54058073..54058088,+!p1@ZNF331!1.76!56.18!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.75!149.60!EGR3;;chrX:48644984..48645005,+!p1@GATA1!1.73!53.27!GATA1;;chr19:18391615..18391637,-!p5@JUND!1.71!65.65!JUND;;chr7:50343634..50343717,+!p2@IKZF1!1.71!50.24!IKZF1;;chr19:13213511..13213545,-!p2@LYL1!1.69!52.39!LYL1;;chr1:25256756..25256774,-!p1@RUNX3!1.68!85.59!RUNX3;;chr3:69788576..69788648,+!p1@MITF!1.66!227.87!MITF;;chr2:145277640..145277771,-!p1@ZEB2!1.65!559.13!ZEB2;;chr3:63953435..63953499,+!p1@ATXN7!1.65!43.30!ATXN7;;chr14:35873947..35873965,-!p1@NFKBIA!1.64!2553.25!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.63!270.79!REL;;chr7:50344251..50344288,+!p3@IKZF1!1.60!38.76!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!1.60!38.38!IKZF1;;chr2:145271342..145271377,-!p5@ZEB2!1.59!37.62!ZEB2;;chrX:106960285..106960299,-!p1@TSC22D3!1.57!918.54!TSC22D3;;chr19:36391434..36391450,-!p1@NFKBID!1.57!69.69!NFKBID;;chr7:138666053..138666146,-!p1@KIAA1549!1.56!139.88!KIAA1549;;chr19:45972701..45972774,+!p2@FOSB!1.55!47.09!FOSB;;chr12:124968706..124968748,-!p18@NCOR2!1.55!34.46!NCOR2;;chr11:47400078..47400106,-!p1@SPI1!1.55!34.21!SPI1;;chr14:75988831..75988847,+!p2@BATF!1.55!34.09!BATF;;chr12:72056800..72056834,+!p1@THAP2!1.54!44.56!THAP2;;chr19:16435705..16435726,+!p3@KLF2!1.54!33.71!KLF2;;chr14:75746664..75746683,+!p7@FOS!1.54!33.58!FOS;;chr1:59249707..59249727,-!p1@JUN!1.53!1311.66!JUN;;chr1:204042233..204042249,+!p1@SOX13!1.53!198.33!SOX13;;chr8:81397876..81397898,+!p5@ZBTB10!1.53!38.50!ZBTB10;;chr1:59249732..59249749,-!p2@JUN!1.52!366.86!JUN;;chr1:47697881..47697910,-!p4@TAL1!1.52!32.19!TAL1;;chr3:39195037..39195069,-!p2@CSRNP1!1.51!187.22!CSRNP1;;chr7:28725715..28725727,+!p3@CREB5!1.51!36.86!CREB5;;chr14:75746340..75746368,+!p3@FOS!1.50!30.80!FOS;;chr19:16435625..16435682,+!p1@KLF2!1.49!918.54!KLF2;;chr10:104154246..104154347,+!p3@NFKB2!1.49!175.35!NFKB2;;chr3:128205779..128205797,-!p5@GATA2!1.49!30.05!GATA2;;chr3:39195075..39195088,-!p1@CSRNP1!1.48!175.22!CSRNP1;;chr10:35484053..35484076,+!p1@CREM!1.48!71.71!CREM;;chr12:52448420..52448460,+!p5@NR4A1!1.48!29.41!NR4A1;;chr1:47695003..47695042,-!p2@TAL1!1.48!29.29!TAL1;;chr10:3827389..3827408,-!p1@KLF6!1.46!2018.87!KLF6;;chr9:135854091..135854159,+!p1@GFI1B!1.45!27.39!GFI1B;;chr3:141150883..141150961,+!p6@ZBTB38!1.45!27.02!ZBTB38;;chr1:158985493..158985535,+!p4@IFI16!1.44!39.51!IFI16;;chr3:128205801..128205819,-!p6@GATA2!1.44!26.51!GATA2;;chr12:52448213..52448262,+!p6@NR4A1!1.44!26.38!NR4A1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.43!1278.71!NFKBIZ;;chr8:81397846..81397860,+!p3@ZBTB10!1.43!32.19!ZBTB10;;chr19:12902289..12902307,+!p1@JUNB!1.42!5567.17!JUNB;;chr2:157199008..157199023,-!p3@NR4A2!1.42!52.52!NR4A2;;chr8:123793988..123794016,+!p1@ZHX2!1.42!44.31!ZHX2;;chr14:75746705..75746720,+!p8@FOS!1.42!25.50!FOS;;chr13:41593425..41593480,-!p1@ELF1!1.41!152.63!ELF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.40!24.24!ZBED1;;chr19:54041669..54041697,+!p2@ZNF331!1.40!24.11!ZNF331;;chr4:103422499..103422632,+!p1@NFKB1!1.36!439.70!NFKB1;;chr9:110252035..110252057,-!p1@KLF4!1.36!340.73!KLF4;;chr19:16435735..16435773,+!p4@KLF2!1.35!21.59!KLF2;;chr19:18392422..18392440,-!p1@JUND!1.34!2745.52!JUND;;chr10:3827371..3827386,-!p2@KLF6!1.34!169.54!KLF6;;chr12:52430894..52430952,+!p3@NR4A1!1.34!39.39!NR4A1;;chr5:137801160..137801176,+!p1@EGR1!1.33!1934.54!EGR1;;chr2:208394817..208394834,+!p3@CREB1!1.33!79.79!CREB1;;chr12:52448338..52448401,+!p7@NR4A1!1.33!20.20!NR4A1;;chr6:15401104..15401166,+!p5@JARID2!1.32!19.95!JARID2;;chr2:157189317..157189325,-!p8@NR4A2!1.32!19.82!NR4A2;;chr19:6110474..6110551,-!p1@RFX2!1.31!115.39!RFX2;;chr11:128563948..128564003,+!p1@FLI1!1.30!223.95!FLI1;;chr9:102584128..102584144,+!p3@NR4A3!1.30!35.47!NR4A3;;chr16:30406101..30406114,+!p6@ZNF48!1.30!18.94!ZNF48;;chr19:13213555..13213568,-!p5@LYL1!1.30!18.94!LYL1;;chr10:3824125..3824146,-!p12@KLF6!1.29!18.56!KLF6;;chr2:178128250..178128293,-!p6@NFE2L2!1.28!44.56!NFE2L2;;chr12:52431016..52431071,+!p4@NR4A1!1.28!20.96!NR4A1;;chr10:35416142..35416169,+!p3@CREM!1.27!45.95!CREM;;chr10:35484090..35484104,+!p6@CREM!1.27!17.80!CREM;;chr12:52448151..52448200,+!p8@NR4A1!1.27!17.55!NR4A1;;chr14:75747296..75747329,+!p4@FOS!1.27!17.42!FOS;;chr2:208031542..208031595,-!p2@KLF7!1.26!119.55!KLF7;;chr1:151030536..151030549,+!p8@MLLT11!1.25!16.66!MLLT11;;chr19:45974146..45974170,+!p7@FOSB!1.24!16.41!FOSB;;chr18:22932080..22932170,-!p1@ZNF521!1.23!66.28!ZNF521;;chr9:102584262..102584276,+!p1@NR4A3!1.23!35.35!NR4A3;;chr6:135502408..135502459,+!p2@MYB!1.23!18.43!MYB;;chr7:17338266..17338282,+!p1@AHR!1.22!164.87!AHR;;chr3:5021113..5021180,+!p1@BHLHE40!1.21!1031.78!BHLHE40;;chr3:128207349..128207386,-!p3@GATA2!1.21!15.28!GATA2;;chr1:59249645..59249656,-!p4@JUN!1.19!36.23!JUN;;chr14:35873101..35873119,-!p6@NFKBIA!1.19!18.94!NFKBIA;;chr7:63505799..63505904,+!p1@ZNF727!1.19!14.52!ZNF727;;chr14:75747250..75747267,+!p5@FOS!1.19!14.52!FOS;;chr20:34359925..34359991,+!p1@PHF20!1.18!615.05!PHF20;;chr10:3827417..3827428,-!p3@KLF6!1.18!120.06!KLF6;;chr7:17338324..17338341,+!p3@AHR!1.18!46.71!AHR;;chr2:157186630..157186686,-!p6@NR4A2!1.18!14.14!NR4A2;;chr14:75746579..75746605,+!p9@FOS!1.18!14.01!FOS;;chr19:45504688..45504782,+!p1@RELB!1.17!82.18!RELB;;chr8:60031619..60031676,-!p1@TOX!1.17!29.79!TOX;;chr14:35872414..35872425,-!p7@NFKBIA!1.17!15.40!NFKBIA;;chr19:45972203..45972226,+!p5@FOSB!1.17!13.89!FOSB;;chr1:204042275..204042286,+!p4@SOX13!1.16!21.33!SOX13;;chr1:158985469..158985489,+!p7@IFI16!1.16!16.03!IFI16;;chr11:47399996..47400014,-!p4@SPI1!1.16!13.51!SPI1;;chr10:129535441..129535454,+!p1@FOXI2!1.16!13.38!FOXI2;;chr1:204042723..204042784,+!p3@SOX13!1.15!22.09!SOX13;;chr10:3824646..3824677,-!p9@KLF6!1.15!13.26!KLF6;;chr4:106068026..106068084,+!p1@TET2!1.14!114.38!TET2;;chr2:157186177..157186204,-!p14@NR4A2!1.14!12.88!NR4A2;;chr19:45972563..45972577,+!p17@FOSB!1.14!12.88!FOSB;;chr19:45252008..45252024,+!p2@BCL3!1.13!41.41!BCL3;;chr4:103422471..103422495,+!p2@NFKB1!1.13!34.72!NFKB1;;chr19:18391708..18391737,-!p7@JUND!1.13!19.19!JUND;;chr1:37940170..37940190,+!p1@ZC3H12A!1.12!149.22!ZC3H12A;;chr14:35872962..35873025,-!p3@NFKBIA!1.12!30.55!NFKBIA;;chr14:64970670..64970712,-!p3@ZBTB25!1.12!26.26!ZBTB25;;chr2:145274900..145274934,-!p4@ZEB2!1.11!72.84!ZEB2;;chr19:45973107..45973118,+!p15@FOSB!1.11!11.99!FOSB;;chr2:61108650..61108687,+!p2@REL!1.10!57.19!REL;;chr2:61108771..61108789,+!p4@REL!1.10!17.55!REL;;chr12:72056773..72056796,+!p3@THAP2!1.10!15.02!THAP2;;chr7:137620650..137620677,-!p3@CREB3L2!1.10!11.61!CREB3L2;;chr14:75746687..75746702,+!p10@FOS!1.10!11.49!FOS;;chr10:104155480..104155534,+!p2@NFKB2!1.09!74.10!NFKB2;;chr12:26277956..26277980,-!p1@BHLHE41!1.09!40.90!BHLHE41;;chr17:38474489..38474548,+!p1@RARA!1.08!347.29!RARA;;chr15:37390850..37390909,-!p3@MEIS2!1.08!21.84!MEIS2;;chr19:42788611..42788634,+!p2@CIC!1.08!17.55!CIC;;chr19:47616992..47617011,-!p4@ZC3H4!1.07!23.23!ZC3H4;;chr4:81118647..81118666,+!p1@PRDM8!1.07!14.39!PRDM8;;chr2:157186310..157186350,-!p10@NR4A2!1.07!10.86!NR4A2;;chr14:75746624..75746635,+!p12@FOS!1.07!10.86!FOS;;chr11:47400045..47400060,-!p6@SPI1!1.07!10.86!SPI1;;chr14:35874125..35874149,-!p11@NFKBIA!1.07!10.86!NFKBIA;;chr14:64969951..64969972,+!p27@ZBTB1!1.07!10.86!ZBTB1;;chr17:74137321..74137337,-!p1@FOXJ1!1.07!10.73!FOXJ1;;chr19:45974005..45974026,+!p11@FOSB!1.06!10.60!FOSB;;chr14:35874077..35874091,-!p8@NFKBIA!1.06!10.35!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.05!101.75!NFKBIE;;chr1:47697539..47697573,-!p3@TAL1!1.05!10.10!TAL1;;chr19:11959532..11959593,+!p1@ZNF439!1.04!38.88!ZNF439;;chr2:157198916..157198978,-!p2@NR4A2!1.04!35.35!NR4A2;;chr6:15246200..15246214,+!p2@JARID2!1.04!27.77!JARID2;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!1.04!16.66!ELK4;;chr10:3824332..3824425,-!p4@KLF6!1.04!16.41!KLF6;;chr18:3449330..3449344,+!p10@TGIF1!1.04!13.26!TGIF1;;chr6:157100031..157100112,+!p2@ARID1B!1.03!53.53!ARID1B;;chr4:87857433..87857472,+!p9@AFF1!1.03!17.42!AFF1;;chr19:13213662..13213686,-!p1@LYL1!1.03!14.39!LYL1;;chr2:28615716..28615733,+!p1@FOSL2!1.02!454.09!FOSL2;;chr21:36421535..36421610,-!p2@RUNX1!1.02!34.09!RUNX1;;chr19:42788636..42788660,+!p1@CIC!1.02!16.03!CIC;;chr9:102584241..102584261,+!p4@NR4A3!1.02!14.77!NR4A3;;chr3:5021026..5021035,+!p5@BHLHE40!1.02!11.74!BHLHE40;;chr8:60031762..60031803,-!p3@TOX!1.01!13.51!TOX;;chr3:39195139..39195150,-!p3@CSRNP1!1.01!11.99!CSRNP1;;chr2:157189101..157189111,-!p15@NR4A2!1.01!9.34!NR4A2;;chr7:99680193..99680204,-!p2@ZNF3!1.01!9.22!ZNF3;;chr16:31885093..31885165,+!p1@ZNF267!1.00!139.25!ZNF267;;chr19:11925071..11925113,+!p1@ZNF440!1.00!66.66!ZNF440;;chr1:47691303..47691319,-!p5@TAL1!1.00!9.09!TAL1;;chr7:17338239..17338262,+!p2@AHR!0.99!66.28!AHR;;chr10:64576105..64576133,-!p1@EGR2!0.99!18.43!EGR2;;chr7:137620684..137620711,-!p4@CRE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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |ffid_belonging_in_development=CL:0000049,CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor4.CNhs12592.11567-120E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11567-120E1 | |id=FF:11567-120E1 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0000261 | |is_a=EFO:0002091;;FF:0000210;;FF:0000261 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12592 | |||
|library_id_phase_based=2:CNhs12592 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11567 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTTTCG.11567 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11567 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTTTCG.11567 | |||
|name=Mast cell, donor4 | |name=Mast cell, donor4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12592,LSID912,release011,COMPLETED | |profile_hcage=CNhs12592,LSID912,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 60: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.20E+03 | ||
|rna_weight_ug=8.1 | |rna_weight_ug=8.1 | ||
|rnaseq_library_id=SRhi10008.GTTTCG | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=primary cells | |sample_category=primary cells | ||
Line 85: | Line 106: | ||
|top_motifs=ATF4:3.51391003542;HSF1,2:2.8749243412;CREB1:2.87261322767;GATA6:2.80230020451;NFKB1_REL_RELA:2.64762221336;PAX2:2.53035315253;PPARG:2.44125801094;ATF5_CREB3:2.34759273311;MAFB:2.30942111065;EGR1..3:2.16878395983;RFX1:1.89792244414;JUN:1.82742050057;FOXN1:1.72879367543;SP1:1.68007988508;SREBF1,2:1.675685373;FOX{D1,D2}:1.52848295959;TFAP2{A,C}:1.49710708594;RFX2..5_RFXANK_RFXAP:1.49511031948;STAT1,3:1.48824236692;ATF2:1.47994786931;PATZ1:1.42368274072;EP300:1.4201416542;ESRRA:1.36050186665;RUNX1..3:1.33411947393;TGIF1:1.23518311395;SPI1:1.18773700872;ATF6:1.16184368506;ELF1,2,4:1.15687437643;SPIB:1.15579776405;CDX1,2,4:1.1200343234;ESR1:1.10008348037;FOSL2:1.0774335123;HOXA9_MEIS1:1.07724037196;FOX{F1,F2,J1}:1.07686031646;XBP1:0.941791735297;DMAP1_NCOR{1,2}_SMARC:0.93369591077;BACH2:0.922465913045;RXRA_VDR{dimer}:0.91398966795;FOS_FOS{B,L1}_JUN{B,D}:0.9058539203;BPTF:0.902946817343;HIF1A:0.902184419822;ETS1,2:0.89808042156;ZNF148:0.836720303192;NFE2:0.832702837199;MAZ:0.815714006196;RXR{A,B,G}:0.811141513221;NFE2L1:0.803777020964;MEF2{A,B,C,D}:0.786574129568;TLX2:0.739567402879;VSX1,2:0.662551494085;TFAP4:0.600548501374;NANOG{mouse}:0.595297509812;MYB:0.5896370732;TFCP2:0.568478790957;FOX{I1,J2}:0.550529262404;NFIL3:0.542457011585;ZNF238:0.518851361098;SPZ1:0.517192515639;TBX4,5:0.472371346434;PAX3,7:0.460569122387;SRF:0.448508623891;SMAD1..7,9:0.444222431528;XCPE1{core}:0.442816372336;bHLH_family:0.439524566437;NFATC1..3:0.436999905527;ALX1:0.431541503244;HBP1_HMGB_SSRP1_UBTF:0.423111571869;ZIC1..3:0.411367098544;AR:0.406290211876;ZFP161:0.40544635304;EBF1:0.346145091799;NHLH1,2:0.340114890203;TFAP2B:0.320180246067;HOX{A6,A7,B6,B7}:0.241951470325;IKZF2:0.233889767151;POU2F1..3:0.218375194826;TBP:0.212617458594;FOXP1:0.173086406523;DBP:0.161553138153;PAX1,9:0.159304859808;HIC1:0.150922427491;PBX1:0.126014267322;GLI1..3:0.119548398654;BREu{core}:0.0806058635248;NFY{A,B,C}:0.0668494913468;SOX2:0.0661599284053;CRX:0.0616632201632;TOPORS:0.0602138207115;NFE2L2:0.0601704689908;HES1:0.0587056873355;FOXQ1:0.0354671863268;MTF1:0.0285240828259;FOXO1,3,4:0.00298598491348;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.03810324362;NR6A1:-0.0676983623632;HMX1:-0.0936486804361;ZBTB6:-0.0942755960409;MTE{core}:-0.111361003208;MED-1{core}:-0.118042833227;MYFfamily:-0.12531161958;PAX5:-0.142169940163;EN1,2:-0.149345842301;RREB1:-0.152876173058;ZNF423:-0.174227435563;GTF2I:-0.217046794137;HLF:-0.238321518819;SOX5:-0.246084665373;REST:-0.285355881357;IRF1,2:-0.294078471197;ELK1,4_GABP{A,B1}:-0.306837683976;PAX6:-0.345852847301;TAL1_TCF{3,4,12}:-0.35134556452;AHR_ARNT_ARNT2:-0.409110435675;PITX1..3:-0.412605299991;POU6F1:-0.416332227023;MZF1:-0.424367325156;CUX2:-0.455463150555;TLX1..3_NFIC{dimer}:-0.46531624371;NRF1:-0.489772671559;HOX{A5,B5}:-0.501193658429;NKX3-2:-0.517290513604;STAT2,4,6:-0.542941373805;ZNF143:-0.554581684837;HNF4A_NR2F1,2:-0.557594490781;E2F1..5:-0.56402382023;ZEB1:-0.573390881076;PAX4:-0.578795847045;TEAD1:-0.58819338684;LHX3,4:-0.588272927484;LEF1_TCF7_TCF7L1,2:-0.621556654997;NR5A1,2:-0.622939154618;GZF1:-0.625802489467;RORA:-0.633858882419;TFDP1:-0.635638434099;TP53:-0.679173438387;CEBPA,B_DDIT3:-0.692585652916;SOX{8,9,10}:-0.710501869993;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.733707126582;HNF1A:-0.734451920334;NANOG:-0.736856548857;IKZF1:-0.74081873833;FOXP3:-0.761850397746;RBPJ:-0.767141653918;ZNF384:-0.797213625435;FOXL1:-0.799450435766;PAX8:-0.804292249048;NKX6-1,2:-0.823673945871;FOXM1:-0.829629179375;PRRX1,2:-0.835009974247;STAT5{A,B}:-0.853384323953;NKX3-1:-0.855463163869;SOX17:-0.881656338194;SNAI1..3:-0.889617135834;ARID5B:-0.892884013448;EVI1:-0.913988099895;IRF7:-0.995416194692;HOX{A4,D4}:-1.03515991543;NKX2-1,4:-1.03577973949;MYOD1:-1.04524273313;GTF2A1,2:-1.04699548323;YY1:-1.0637150237;POU5F1:-1.10726734443;PRDM1:-1.14926993583;NR1H4:-1.15312546067;GATA4:-1.1531286011;OCT4_SOX2{dimer}:-1.15894541623;NFIX:-1.22703485802;HAND1,2:-1.23282036246;FOXD3:-1.26970634901;NKX2-3_NKX2-5:-1.29636227342;NKX2-2,8:-1.30221668359;ZBTB16:-1.32139590042;AIRE:-1.34363486076;UFEwm:-1.37367177004;ONECUT1,2:-1.37732623072;T:-1.42565803318;POU1F1:-1.42829576859;GFI1:-1.42960961916;NR3C1:-1.48044659639;FOXA2:-1.7031802629;MYBL2:-1.82138303022;HMGA1,2:-1.82202856056;GCM1,2:-2.00309044036;GFI1B:-2.12487774376;LMO2:-2.13128080299;CDC5L:-2.26714290362;KLF4:-2.27594824482;ALX4:-2.28837086862;POU3F1..4:-2.31170372913;ADNP_IRX_SIX_ZHX:-2.4021787909;PDX1:-2.64555380772;TEF:-2.70595041965 | |top_motifs=ATF4:3.51391003542;HSF1,2:2.8749243412;CREB1:2.87261322767;GATA6:2.80230020451;NFKB1_REL_RELA:2.64762221336;PAX2:2.53035315253;PPARG:2.44125801094;ATF5_CREB3:2.34759273311;MAFB:2.30942111065;EGR1..3:2.16878395983;RFX1:1.89792244414;JUN:1.82742050057;FOXN1:1.72879367543;SP1:1.68007988508;SREBF1,2:1.675685373;FOX{D1,D2}:1.52848295959;TFAP2{A,C}:1.49710708594;RFX2..5_RFXANK_RFXAP:1.49511031948;STAT1,3:1.48824236692;ATF2:1.47994786931;PATZ1:1.42368274072;EP300:1.4201416542;ESRRA:1.36050186665;RUNX1..3:1.33411947393;TGIF1:1.23518311395;SPI1:1.18773700872;ATF6:1.16184368506;ELF1,2,4:1.15687437643;SPIB:1.15579776405;CDX1,2,4:1.1200343234;ESR1:1.10008348037;FOSL2:1.0774335123;HOXA9_MEIS1:1.07724037196;FOX{F1,F2,J1}:1.07686031646;XBP1:0.941791735297;DMAP1_NCOR{1,2}_SMARC:0.93369591077;BACH2:0.922465913045;RXRA_VDR{dimer}:0.91398966795;FOS_FOS{B,L1}_JUN{B,D}:0.9058539203;BPTF:0.902946817343;HIF1A:0.902184419822;ETS1,2:0.89808042156;ZNF148:0.836720303192;NFE2:0.832702837199;MAZ:0.815714006196;RXR{A,B,G}:0.811141513221;NFE2L1:0.803777020964;MEF2{A,B,C,D}:0.786574129568;TLX2:0.739567402879;VSX1,2:0.662551494085;TFAP4:0.600548501374;NANOG{mouse}:0.595297509812;MYB:0.5896370732;TFCP2:0.568478790957;FOX{I1,J2}:0.550529262404;NFIL3:0.542457011585;ZNF238:0.518851361098;SPZ1:0.517192515639;TBX4,5:0.472371346434;PAX3,7:0.460569122387;SRF:0.448508623891;SMAD1..7,9:0.444222431528;XCPE1{core}:0.442816372336;bHLH_family:0.439524566437;NFATC1..3:0.436999905527;ALX1:0.431541503244;HBP1_HMGB_SSRP1_UBTF:0.423111571869;ZIC1..3:0.411367098544;AR:0.406290211876;ZFP161:0.40544635304;EBF1:0.346145091799;NHLH1,2:0.340114890203;TFAP2B:0.320180246067;HOX{A6,A7,B6,B7}:0.241951470325;IKZF2:0.233889767151;POU2F1..3:0.218375194826;TBP:0.212617458594;FOXP1:0.173086406523;DBP:0.161553138153;PAX1,9:0.159304859808;HIC1:0.150922427491;PBX1:0.126014267322;GLI1..3:0.119548398654;BREu{core}:0.0806058635248;NFY{A,B,C}:0.0668494913468;SOX2:0.0661599284053;CRX:0.0616632201632;TOPORS:0.0602138207115;NFE2L2:0.0601704689908;HES1:0.0587056873355;FOXQ1:0.0354671863268;MTF1:0.0285240828259;FOXO1,3,4:0.00298598491348;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.03810324362;NR6A1:-0.0676983623632;HMX1:-0.0936486804361;ZBTB6:-0.0942755960409;MTE{core}:-0.111361003208;MED-1{core}:-0.118042833227;MYFfamily:-0.12531161958;PAX5:-0.142169940163;EN1,2:-0.149345842301;RREB1:-0.152876173058;ZNF423:-0.174227435563;GTF2I:-0.217046794137;HLF:-0.238321518819;SOX5:-0.246084665373;REST:-0.285355881357;IRF1,2:-0.294078471197;ELK1,4_GABP{A,B1}:-0.306837683976;PAX6:-0.345852847301;TAL1_TCF{3,4,12}:-0.35134556452;AHR_ARNT_ARNT2:-0.409110435675;PITX1..3:-0.412605299991;POU6F1:-0.416332227023;MZF1:-0.424367325156;CUX2:-0.455463150555;TLX1..3_NFIC{dimer}:-0.46531624371;NRF1:-0.489772671559;HOX{A5,B5}:-0.501193658429;NKX3-2:-0.517290513604;STAT2,4,6:-0.542941373805;ZNF143:-0.554581684837;HNF4A_NR2F1,2:-0.557594490781;E2F1..5:-0.56402382023;ZEB1:-0.573390881076;PAX4:-0.578795847045;TEAD1:-0.58819338684;LHX3,4:-0.588272927484;LEF1_TCF7_TCF7L1,2:-0.621556654997;NR5A1,2:-0.622939154618;GZF1:-0.625802489467;RORA:-0.633858882419;TFDP1:-0.635638434099;TP53:-0.679173438387;CEBPA,B_DDIT3:-0.692585652916;SOX{8,9,10}:-0.710501869993;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.733707126582;HNF1A:-0.734451920334;NANOG:-0.736856548857;IKZF1:-0.74081873833;FOXP3:-0.761850397746;RBPJ:-0.767141653918;ZNF384:-0.797213625435;FOXL1:-0.799450435766;PAX8:-0.804292249048;NKX6-1,2:-0.823673945871;FOXM1:-0.829629179375;PRRX1,2:-0.835009974247;STAT5{A,B}:-0.853384323953;NKX3-1:-0.855463163869;SOX17:-0.881656338194;SNAI1..3:-0.889617135834;ARID5B:-0.892884013448;EVI1:-0.913988099895;IRF7:-0.995416194692;HOX{A4,D4}:-1.03515991543;NKX2-1,4:-1.03577973949;MYOD1:-1.04524273313;GTF2A1,2:-1.04699548323;YY1:-1.0637150237;POU5F1:-1.10726734443;PRDM1:-1.14926993583;NR1H4:-1.15312546067;GATA4:-1.1531286011;OCT4_SOX2{dimer}:-1.15894541623;NFIX:-1.22703485802;HAND1,2:-1.23282036246;FOXD3:-1.26970634901;NKX2-3_NKX2-5:-1.29636227342;NKX2-2,8:-1.30221668359;ZBTB16:-1.32139590042;AIRE:-1.34363486076;UFEwm:-1.37367177004;ONECUT1,2:-1.37732623072;T:-1.42565803318;POU1F1:-1.42829576859;GFI1:-1.42960961916;NR3C1:-1.48044659639;FOXA2:-1.7031802629;MYBL2:-1.82138303022;HMGA1,2:-1.82202856056;GCM1,2:-2.00309044036;GFI1B:-2.12487774376;LMO2:-2.13128080299;CDC5L:-2.26714290362;KLF4:-2.27594824482;ALX4:-2.28837086862;POU3F1..4:-2.31170372913;ADNP_IRX_SIX_ZHX:-2.4021787909;PDX1:-2.64555380772;TEF:-2.70595041965 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11567-120E1;search_select_hide=table117:FF:11567-120E1 | |||
}} | }} |
Latest revision as of 18:09, 4 June 2020
Name: | Mast cell, donor4 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12592 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12592
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12592
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.154 |
10 | 10 | 0.555 |
100 | 100 | 0.279 |
101 | 101 | 0.365 |
102 | 102 | 0.772 |
103 | 103 | 0.254 |
104 | 104 | 0.876 |
105 | 105 | 0.307 |
106 | 106 | 0.511 |
107 | 107 | 0.01 |
108 | 108 | 0.162 |
109 | 109 | 0.995 |
11 | 11 | 0.391 |
110 | 110 | 0.265 |
111 | 111 | 0.102 |
112 | 112 | 0.922 |
113 | 113 | 0.434 |
114 | 114 | 0.0844 |
115 | 115 | 0.559 |
116 | 116 | 0.115 |
117 | 117 | 0.0393 |
118 | 118 | 0.283 |
119 | 119 | 0.114 |
12 | 12 | 0.653 |
120 | 120 | 0.0854 |
121 | 121 | 0.269 |
122 | 122 | 0.269 |
123 | 123 | 0.477 |
124 | 124 | 0.0562 |
125 | 125 | 0.204 |
126 | 126 | 0.505 |
127 | 127 | 0.826 |
128 | 128 | 0.704 |
129 | 129 | 0.0175 |
13 | 13 | 0.666 |
130 | 130 | 0.538 |
131 | 131 | 0.851 |
132 | 132 | 0.125 |
133 | 133 | 0.184 |
134 | 134 | 0.497 |
135 | 135 | 0.859 |
136 | 136 | 0.0951 |
137 | 137 | 0.0708 |
138 | 138 | 0.17 |
139 | 139 | 0.657 |
14 | 14 | 0.717 |
140 | 140 | 0.184 |
141 | 141 | 0.183 |
142 | 142 | 0.107 |
143 | 143 | 0.658 |
144 | 144 | 0.904 |
145 | 145 | 0.321 |
146 | 146 | 0.405 |
147 | 147 | 0.164 |
148 | 148 | 0.608 |
149 | 149 | 0.104 |
15 | 15 | 0.459 |
150 | 150 | 0.846 |
151 | 151 | 0.389 |
152 | 152 | 0.0103 |
153 | 153 | 0.482 |
154 | 154 | 0.951 |
155 | 155 | 0.262 |
156 | 156 | 0.822 |
157 | 157 | 0.868 |
158 | 158 | 0.381 |
159 | 159 | 0.583 |
16 | 16 | 0.233 |
160 | 160 | 0.0542 |
161 | 161 | 0.398 |
162 | 162 | 0.0658 |
163 | 163 | 0.196 |
164 | 164 | 0.36 |
165 | 165 | 0.684 |
166 | 166 | 0.0304 |
167 | 167 | 0.425 |
168 | 168 | 0.116 |
169 | 169 | 0.697 |
17 | 17 | 0.681 |
18 | 18 | 0.269 |
19 | 19 | 0.209 |
2 | 2 | 0.114 |
20 | 20 | 0.325 |
21 | 21 | 0.53 |
22 | 22 | 0.591 |
23 | 23 | 0.993 |
24 | 24 | 0.987 |
25 | 25 | 0.837 |
26 | 26 | 0.407 |
27 | 27 | 0.213 |
28 | 28 | 0.525 |
29 | 29 | 0.317 |
3 | 3 | 0.234 |
30 | 30 | 0.494 |
31 | 31 | 0.453 |
32 | 32 | 0.0034 |
33 | 33 | 0.671 |
34 | 34 | 0.796 |
35 | 35 | 0.0806 |
36 | 36 | 0.931 |
37 | 37 | 0.433 |
38 | 38 | 0.739 |
39 | 39 | 0.552 |
4 | 4 | 0.43 |
40 | 40 | 0.619 |
41 | 41 | 0.686 |
42 | 42 | 0.266 |
43 | 43 | 0.39 |
44 | 44 | 0.0857 |
45 | 45 | 0.757 |
46 | 46 | 0.243 |
47 | 47 | 0.314 |
48 | 48 | 0.221 |
49 | 49 | 0.432 |
5 | 5 | 0.616 |
50 | 50 | 0.958 |
51 | 51 | 0.954 |
52 | 52 | 0.95 |
53 | 53 | 0.967 |
54 | 54 | 0.902 |
55 | 55 | 0.471 |
56 | 56 | 0.566 |
57 | 57 | 0.0884 |
58 | 58 | 0.703 |
59 | 59 | 0.897 |
6 | 6 | 0.801 |
60 | 60 | 0.962 |
61 | 61 | 0.694 |
62 | 62 | 0.804 |
63 | 63 | 0.313 |
64 | 64 | 0.465 |
65 | 65 | 0.542 |
66 | 66 | 0.899 |
67 | 67 | 0.383 |
68 | 68 | 0.536 |
69 | 69 | 0.206 |
7 | 7 | 0.842 |
70 | 70 | 0.318 |
71 | 71 | 0.369 |
72 | 72 | 0.47 |
73 | 73 | 0.05 |
74 | 74 | 0.00461 |
75 | 75 | 0.649 |
76 | 76 | 0.998 |
77 | 77 | 0.085 |
78 | 78 | 0.649 |
79 | 79 | 0.428 |
8 | 8 | 0.1 |
80 | 80 | 0.57 |
81 | 81 | 0.233 |
82 | 82 | 0.76 |
83 | 83 | 0.841 |
84 | 84 | 0.14 |
85 | 85 | 0.914 |
86 | 86 | 0.0696 |
87 | 87 | 0.199 |
88 | 88 | 0.446 |
89 | 89 | 0.0248 |
9 | 9 | 0.76 |
90 | 90 | 0.197 |
91 | 91 | 0.586 |
92 | 92 | 0.335 |
93 | 93 | 0.33 |
94 | 94 | 0.86 |
95 | 95 | 0.0199 |
96 | 96 | 0.226 |
97 | 97 | 0.59 |
98 | 98 | 0.374 |
99 | 99 | 5.91839e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12592
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000261 mast cell- heparinase treated sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)