FF:11800-124C9: Difference between revisions

Latest revision as of 18:21, 4 June 2020

Name:	CD14-CD16+ Monocytes, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13207
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	monocyte
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	29
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005837

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13207		CAGE		DRX008168		DRR009040

Accession ID Hg19

Library id		BAM		CTSS
CNhs13207		DRZ000465		DRZ001850

Accession ID Hg38

Library id		BAM		CTSS
CNhs13207		DRZ011815		DRZ013200

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.114
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0788
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.296
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0847
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.112
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.119
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.476
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.145
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.145
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.387
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.246
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.21
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.578
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.145
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.0839
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.0788
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.034
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.405
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.855
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.579
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.53
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.581
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.446
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.145
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.679
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0788
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.145
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.362
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.62
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.303
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.504
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.162
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0788
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.3
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	1.194
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.174
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.53
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.145
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.0788
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	1.051
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13207

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.88395e-7
MA0003.1	MA0003.1	0.0551
MA0004.1	MA0004.1	0.559
MA0006.1	MA0006.1	0.88
MA0007.1	MA0007.1	0.974
MA0009.1	MA0009.1	0.137
MA0014.1	MA0014.1	0.654
MA0017.1	MA0017.1	0.00875
MA0018.2	MA0018.2	0.1
MA0019.1	MA0019.1	0.611
MA0024.1	MA0024.1	0.0133
MA0025.1	MA0025.1	0.158
MA0027.1	MA0027.1	0.74
MA0028.1	MA0028.1	0.269
MA0029.1	MA0029.1	0.255
MA0030.1	MA0030.1	0.284
MA0031.1	MA0031.1	0.525
MA0035.2	MA0035.2	0.885
MA0038.1	MA0038.1	0.028
MA0039.2	MA0039.2	0.554
MA0040.1	MA0040.1	0.43
MA0041.1	MA0041.1	0.452
MA0042.1	MA0042.1	0.278
MA0043.1	MA0043.1	0.0674
MA0046.1	MA0046.1	0.0444
MA0047.2	MA0047.2	0.132
MA0048.1	MA0048.1	0.803
MA0050.1	MA0050.1	4.06443e-13
MA0051.1	MA0051.1	2.25679e-6
MA0052.1	MA0052.1	0.741
MA0055.1	MA0055.1	0.815
MA0057.1	MA0057.1	0.929
MA0058.1	MA0058.1	0.347
MA0059.1	MA0059.1	0.549
MA0060.1	MA0060.1	1.87242e-5
MA0061.1	MA0061.1	0.00388
MA0062.2	MA0062.2	2.34337e-5
MA0065.2	MA0065.2	0.0103
MA0066.1	MA0066.1	0.149
MA0067.1	MA0067.1	0.00718
MA0068.1	MA0068.1	0.456
MA0069.1	MA0069.1	0.913
MA0070.1	MA0070.1	0.00806
MA0071.1	MA0071.1	0.044
MA0072.1	MA0072.1	0.596
MA0073.1	MA0073.1	0.407
MA0074.1	MA0074.1	0.316
MA0076.1	MA0076.1	0.222
MA0077.1	MA0077.1	0.064
MA0078.1	MA0078.1	0.836
MA0079.2	MA0079.2	0.655
MA0080.2	MA0080.2	7.75163e-17
MA0081.1	MA0081.1	4.53589e-5
MA0083.1	MA0083.1	0.409
MA0084.1	MA0084.1	0.395
MA0087.1	MA0087.1	0.308
MA0088.1	MA0088.1	0.464
MA0090.1	MA0090.1	0.0049
MA0091.1	MA0091.1	0.325
MA0092.1	MA0092.1	0.413
MA0093.1	MA0093.1	0.632
MA0099.2	MA0099.2	0.621
MA0100.1	MA0100.1	0.936
MA0101.1	MA0101.1	0.036
MA0102.2	MA0102.2	5.46128e-4
MA0103.1	MA0103.1	0.531
MA0104.2	MA0104.2	0.569
MA0105.1	MA0105.1	2.21655e-5
MA0106.1	MA0106.1	0.591
MA0107.1	MA0107.1	0.0143
MA0108.2	MA0108.2	5.55231e-10
MA0111.1	MA0111.1	0.256
MA0112.2	MA0112.2	6.5678e-4
MA0113.1	MA0113.1	0.775
MA0114.1	MA0114.1	0.063
MA0115.1	MA0115.1	0.305
MA0116.1	MA0116.1	3.67642e-5
MA0117.1	MA0117.1	0.498
MA0119.1	MA0119.1	0.328
MA0122.1	MA0122.1	0.691
MA0124.1	MA0124.1	0.243
MA0125.1	MA0125.1	0.235
MA0131.1	MA0131.1	0.637
MA0135.1	MA0135.1	0.935
MA0136.1	MA0136.1	3.20329e-20
MA0137.2	MA0137.2	0.49
MA0138.2	MA0138.2	0.724
MA0139.1	MA0139.1	0.594
MA0140.1	MA0140.1	0.905
MA0141.1	MA0141.1	0.0158
MA0142.1	MA0142.1	0.384
MA0143.1	MA0143.1	0.81
MA0144.1	MA0144.1	0.899
MA0145.1	MA0145.1	0.23
MA0146.1	MA0146.1	0.0249
MA0147.1	MA0147.1	0.625
MA0148.1	MA0148.1	0.563
MA0149.1	MA0149.1	0.116
MA0150.1	MA0150.1	0.1
MA0152.1	MA0152.1	0.0322
MA0153.1	MA0153.1	0.00547
MA0154.1	MA0154.1	0.00214
MA0155.1	MA0155.1	0.876
MA0156.1	MA0156.1	4.32693e-11
MA0157.1	MA0157.1	0.279
MA0159.1	MA0159.1	0.0741
MA0160.1	MA0160.1	0.00986
MA0162.1	MA0162.1	0.639
MA0163.1	MA0163.1	1.08892e-12
MA0164.1	MA0164.1	0.907
MA0258.1	MA0258.1	0.0103
MA0259.1	MA0259.1	0.981

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13207

Novel motif	Logo	P-value
1	1	0.101
10	10	0.0232
100	100	0.919
101	101	0.34
102	102	0.414
103	103	0.266
104	104	0.648
105	105	0.285
106	106	0.00816
107	107	0.629
108	108	0.905
109	109	0.025
11	11	0.147
110	110	0.192
111	111	0.0176
112	112	0.164
113	113	0.513
114	114	0.00287
115	115	0.436
116	116	0.981
117	117	0.019
118	118	0.0982
119	119	0.172
12	12	0.354
120	120	0.53
121	121	0.95
122	122	0.863
123	123	4.08119e-4
124	124	0.474
125	125	0.0486
126	126	0.156
127	127	0.294
128	128	0.0639
129	129	0.967
13	13	0.0979
130	130	0.268
131	131	0.973
132	132	0.0541
133	133	0.0537
134	134	0.671
135	135	0.191
136	136	0.631
137	137	3.73245e-4
138	138	0.259
139	139	0.0139
14	14	0.318
140	140	0.271
141	141	0.723
142	142	0.921
143	143	0.0992
144	144	0.914
145	145	0.33
146	146	0.791
147	147	0.347
148	148	0.0298
149	149	0.619
15	15	0.108
150	150	0.48
151	151	0.24
152	152	0.222
153	153	0.459
154	154	0.793
155	155	0.0397
156	156	0.883
157	157	0.95
158	158	0.144
159	159	0.376
16	16	0.394
160	160	0.515
161	161	0.416
162	162	0.699
163	163	0.246
164	164	0.123
165	165	0.0379
166	166	0.295
167	167	0.0742
168	168	0.649
169	169	0.0166
17	17	0.345
18	18	0.196
19	19	0.281
2	2	0.803
20	20	0.49
21	21	0.412
22	22	0.253
23	23	0.336
24	24	0.332
25	25	0.125
26	26	0.0621
27	27	0.459
28	28	0.535
29	29	0.0652
3	3	0.0601
30	30	0.368
31	31	0.602
32	32	0.823
33	33	0.235
34	34	0.576
35	35	0.159
36	36	0.0513
37	37	0.0488
38	38	0.515
39	39	0.645
4	4	0.904
40	40	0.194
41	41	0.0743
42	42	0.279
43	43	0.0723
44	44	0.448
45	45	0.866
46	46	0.105
47	47	0.314
48	48	0.338
49	49	0.0877
5	5	0.133
50	50	0.995
51	51	0.394
52	52	0.347
53	53	0.318
54	54	0.417
55	55	0.407
56	56	0.769
57	57	0.752
58	58	0.027
59	59	0.119
6	6	0.994
60	60	0.0344
61	61	0.172
62	62	0.00662
63	63	0.48
64	64	0.342
65	65	0.374
66	66	0.268
67	67	0.217
68	68	0.983
69	69	0.509
7	7	0.147
70	70	0.0165
71	71	0.0436
72	72	0.299
73	73	0.129
74	74	0.494
75	75	0.0336
76	76	0.293
77	77	0.585
78	78	0.226
79	79	0.254
8	8	0.241
80	80	0.373
81	81	0.176
82	82	0.122
83	83	0.936
84	84	0.786
85	85	0.0501
86	86	0.0973
87	87	0.176
88	88	0.47
89	89	0.821
9	9	0.307
90	90	0.0815
91	91	0.43
92	92	0.385
93	93	0.399
94	94	0.015
95	95	0.0516
96	96	0.311
97	97	0.929
98	98	0.146
99	99	0.0808

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13207

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011100 human CD14-CD16-positive Monocytes sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000875 (non-classical monocyte)
0002396 (CD14-low, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011100 (human CD14-CD16-positive Monocytes sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005837
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000875,CL:0002393,CL:0000566,CL:0002397,CL:0000049,CL:0000557,CL:0000837,CL:0002396,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008168;DRR009040;DRZ000465;DRZ001850;DRZ011815;DRZ013200
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000875,CL:0002396
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011100
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.67!466.46!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.61!407.98!PLEK;;chr7:50344289..50344323,+!p1@IKZF1!2.07!117.56!IKZF1;;chr11:47399947..47399961,-!p3@SPI1!2.06!112.59!SPI1;;chr11:47400062..47400077,-!p2@SPI1!1.96!89.31!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.83!66.84!IRF8;;chr12:54778351..54778378,-!p6@ZNF385A!1.81!64.25!ZNF385A;;chr19:13213662..13213686,-!p1@LYL1!1.77!84.74!LYL1;;chr21:34442439..34442455,+!p1@OLIG1!1.75!54.90!OLIG1;;chr5:176735063..176735088,-!p2@MXD3!1.71!49.93!MXD3;;chr2:145277640..145277771,-!p1@ZEB2!1.67!586.21!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.67!45.95!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.66!503.26!MAFB;;chr11:47399920..47399931,-!p7@SPI1!1.63!41.57!SPI1;;chr21:34442540..34442560,+!p2@OLIG1!1.63!41.37!OLIG1;;chr19:33793430..33793447,-!p1@CEBPA!1.62!163.11!CEBPA;;chr11:47400032..47400043,-!p5@SPI1!1.62!40.58!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.57!35.81!ZNF385A;;chrX:106960180..106960197,-!p2@TSC22D3!1.55!127.90!TSC22D3;;chr19:16435625..16435682,+!p1@KLF2!1.49!913.82!KLF2;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.64!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!1.44!49.13!RUNX3;;chr19:42636586..42636607,-!p1@POU2F2!1.42!67.63!POU2F2;;chr7:128577972..128578047,+!p1@IRF5!1.42!38.99!IRF5;;chr5:88178983..88179012,-!p1@MEF2C!1.41!184.99!MEF2C;;chr1:212873084..212873137,-!p2@BATF3!1.41!24.47!BATF3;;chr9:110252035..110252057,-!p1@KLF4!1.33!315.28!KLF4;;chr14:75745523..75745537,+!p1@FOS!1.32!2285.75!FOS;;chr3:101568349..101568365,+!p1@NFKBIZ!1.32!995.18!NFKBIZ;;chr10:114710098..114710130,+!p2@TCF7L2!1.32!145.21!TCF7L2;;chr10:94449703..94449718,+!p1@HHEX!1.31!74.39!HHEX;;chr2:68592394..68592405,+!p2@PLEK!1.31!19.29!PLEK;;chr9:110250697..110250738,-!p2@KLF4!1.30!22.28!KLF4;;chr10:51572408..51572454,+!p3@NCOA4!1.29!106.82!NCOA4;;chrX:106960221..106960236,-!p3@TSC22D3!1.29!50.52!TSC22D3;;chr7:50343634..50343717,+!p2@IKZF1!1.29!18.70!IKZF1;;chrX:106960249..106960260,-!p5@TSC22D3!1.27!27.85!TSC22D3;;chrY:21906594..21906622,-!p1@KDM5D!1.27!17.70!KDM5D;;chr2:231090433..231090469,+!p1@SP140!1.27!17.50!SP140;;chr10:114709999..114710031,+!p1@TCF7L2!1.24!378.54!TCF7L2;;chr11:128563948..128564003,+!p1@FLI1!1.24!192.95!FLI1;;chrX:106960285..106960299,-!p1@TSC22D3!1.22!405.39!TSC22D3;;chr1:935467..935484,-!p1@HES4!1.20!64.65!HES4;;chr1:25256439..25256476,-!p3@RUNX3!1.20!14.72!RUNX3;;chr2:28618532..28618610,+!p4@FOSL2!1.19!24.67!FOSL2;;chr12:72056800..72056834,+!p1@THAP2!1.18!19.10!THAP2;;chr2:145271342..145271377,-!p5@ZEB2!1.18!14.12!ZEB2;;chr10:3827371..3827386,-!p2@KLF6!1.17!115.37!KLF6;;chr20:48807456..48807475,+!p3@CEBPB!1.17!26.65!CEBPB;;chr2:208394817..208394834,+!p3@CREB1!1.16!53.51!CREB1;;chr19:12902289..12902307,+!p1@JUNB!1.14!2910.55!JUNB;;chr12:52445218..52445237,+!p1@NR4A1!1.13!155.95!NR4A1;;chr13:41593425..41593480,-!p1@ELF1!1.13!79.17!ELF1;;chr12:54694758..54694805,-!p1@NFE2!1.12!14.92!NFE2;;chr10:114710244..114710257,+!p3@TCF7L2!1.11!32.42!TCF7L2;;chr2:208031943..208031978,-!p5@KLF7!1.11!15.91!KLF7;;chr1:212873061..212873080,-!p4@BATF3!1.11!11.94!BATF3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.09!61.86!LRRFIP1;;chr4:185395633..185395651,-!p2@IRF2!1.09!18.30!IRF2;;chr2:70142232..70142251,+!p1@MXD1!1.08!63.06!MXD1;;chr19:45579725..45579743,-!p1@ZNF296!1.08!49.73!ZNF296;;chr8:71316428..71316459,-!p2@NCOA2!1.05!17.11!NCOA2;;chr14:75746722..75746777,+!p2@FOS!1.05!13.13!FOS;;chr9:135854091..135854159,+!p1@GFI1B!1.05!10.34!GFI1B;;chr15:90544182..90544195,+!p7@ZNF710!1.05!10.14!ZNF710;;chr2:61108695..61108753,+!p1@REL!1.04!69.22!REL;;chr10:94449675..94449694,+!p2@HHEX!1.04!26.85!HHEX;;chr6:391743..391759,+!p1@IRF4!1.03!9.75!IRF4;;chr19:45971246..45971265,+!p1@FOSB!1.02!181.01!FOSB;;chr9:137217986..137218049,+!p3@RXRA!1.02!27.65!RXRA;;chr4:38665810..38665827,+!p1@KLF3!1.01!138.25!KLF3;;chr7:77428066..77428132,+!p2@PHTF2!1.01!60.47!PHTF2;;chr10:114710060..114710069,+!p5@TCF7L2!1.01!15.91!TCF7L2;;chrY:2803415..2803468,+!p1@ZFY!1.01!9.35!ZFY;;chr21:30671690..30671762,+!p2@BACH1!1.00!31.23!BACH1;;chr7:50344251..50344288,+!p3@IKZF1!1.00!8.95!IKZF1;;chr1:935398..935465,-!p2@HES4!0.99!18.50!HES4;;chr6:144385698..144385742,-!p2@PLAGL1!0.99!10.74!PLAGL1;;chr17:38497662..38497713,+!p4@RARA!0.99!10.14!RARA;;chr5:131826457..131826514,-!p1@IRF1!0.98!345.32!IRF1;;chr4:185395191..185395226,-!p4@IRF2!0.98!12.13!IRF2;;chr7:115670804..115670825,-!p1@TFEC!0.98!8.55!TFEC;;chr8:37553292..37553317,+!p1@ZNF703!0.97!203.09!ZNF703;;chr4:185395590..185395627,-!p3@IRF2!0.97!10.54!IRF2;;chr2:231084659..231084721,-!p1@SP110!0.96!196.93!SP110;;chr21:30672433..30672464,+!p6@BACH1!0.96!8.16!BACH1;;chr10:135044190..135044229,+!p3@UTF1!0.96!8.16!UTF1;;chr4:106068026..106068084,+!p1@TET2!0.94!72.41!TET2;;chr14:45722360..45722415,-!p1@MIS18BP1!0.93!121.34!MIS18BP1;;chr10:35416142..35416169,+!p3@CREM!0.93!20.49!CREM;;chr10:114710218..114710229,+!p4@TCF7L2!0.93!15.12!TCF7L2;;chr1:158978768..158978800,+!p8@IFI16!0.93!7.56!IFI16;;chr9:110252074..110252079,-!p3@KLF4!0.92!12.33!KLF4;;chr2:231090471..231090504,+!p2@SP140!0.92!7.36!SP140;;chr4:38665769..38665801,+!p2@KLF3!0.91!67.43!KLF3;;chr9:110251836..110251887,-!p4@KLF4!0.91!9.55!KLF4;;chr19:42627037..42627084,-!p3@POU2F2!0.91!7.16!POU2F2;;chr9:117150254..117150271,-!p1@AKNA!0.90!19.89!AKNA;;chr20:48807615..48807644,+!p6@CEBPB!0.90!11.74!CEBPB;;chr20:48807430..48807439,+!p8@CEBPB!0.90!10.74!CEBPB;;chr18:51751066..51751077,-!p6@MBD2!0.90!10.74!MBD2;;chr17:38498402..38498445,+!p3@RARA!0.89!25.46!RARA;;chr20:48807351..48807384,+!p1@CEBPB!0.88!717.09!CEBPB;;chrX:129244454..129244488,-!p1@ELF4!0.88!50.72!ELF4;;chr2:157189180..157189290,-!p1@NR4A2!0.88!36.20!NR4A2;;chr5:88179017..88179046,-!p2@MEF2C!0.88!27.85!MEF2C;;chr21:30671235..30671253,+!p1@BACH1!0.87!86.13!BACH1;;chr1:161014760..161014788,-!p4@USF1!0.86!6.17!USF1;;chr22:21771656..21771662,+!p1@HIC2!0.86!6.17!HIC2;;chr19:16435735..16435773,+!p4@KLF2!0.86!6.17!KLF2;;chr10:104154246..104154347,+!p3@NFKB2!0.85!39.98!NFKB2;;chr19:49140609..49140643,-!p1@DBP!0.85!36.40!DBP;;chr17:38256799..38256815,-!p3@NR1D1!0.85!11.34!NR1D1;;chr1:935496..935509,-!p3@HES4!0.85!9.55!HES4;;chr16:31885093..31885165,+!p1@ZNF267!0.84!96.28!ZNF267;;chr10:114710083..114710092,+!p8@TCF7L2!0.84!8.16!TCF7L2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.84!5.97!LRRFIP1;;chrX:129244840..129244881,-!p2@ELF4!0.83!23.47!ELF4;;chr5:172483347..172483407,+!p1@C5orf41!0.82!45.15!CREBRF;;chr11:615942..615957,-!p1@IRF7!0.81!55.70!IRF7;;chr8:48650697..48650708,-!p2@CEBPD!0.81!45.15!CEBPD;;chr17:38498594..38498661,+!p2@RARA!0.81!19.69!RARA;;chr14:64971288..64971316,-!p2@ZBTB25!0.81!17.90!ZBTB25;;chr12:72056773..72056796,+!p3@THAP2!0.81!7.36!THAP2;;chr18:51750948..51751059,-!p1@MBD2!0.80!183.20!MBD2;;chr9:88969303..88969335,-!p1@ZCCHC6!0.80!53.71!ZCCHC6;;chr17:40440481..40440550,+!p1@STAT5A!0.80!41.77!STAT5A;;chr2:157198916..157198978,-!p2@NR4A2!0.80!20.09!NR4A2;;chr18:77155922..77155939,+!p1@NFATC1!0.80!15.32!NFATC1;;chr2:176033066..176033087,-!p2@ATF2!0.80!6.96!ATF2;;chr6:44355499..44355514,+!p3@CDC5L!0.80!5.97!CDC5L;;chrX:70712265..70712303,+!p4@TAF1!0.80!5.37!TAF1;;chr2:145275982..145276003,-!p7@ZEB2!0.80!5.37!ZEB2;;chr10:114886551..114886601,+!p11@TCF7L2!0.80!5.37!TCF7L2;;chr6:12011943..12012015,+!p2@HIVEP1!0.79!17.90!HIVEP1;;chr1:158979872..158979898,+!p3@IFI16!0.79!16.91!IFI16;;chr18:42260030..42260055,+!p3@SETBP1!0.79!6.56!SETBP1;;chr8:71316021..71316068,-!p1@NCOA2!0.78!51.12!NCOA2;;chr3:150126904..150126958,+!p7@TSC22D2!0.78!9.15!TSC22D2;;chr19:13213954..13214021,-!p4@LYL1!0.78!4.97!LYL1;;chr6:170862932..170862947,+!p5@TBP!0.78!4.97!TBP;;chr6:130339710..130339745,+!p1@L3MBTL3!0.77!42.37!L3MBTL3;;chr3:39195075..39195088,-!p1@CSRNP1!0.77!33.82!CSRNP1;;chr6:28092375..28092412,+!p1@ZSCAN16!0.77!22.48!ZSCAN16;;chr5:142782823..142782854,-!p3@NR3C1!0.77!7.16!NR3C1;;chr2:10183651..10183713,+!p1@KLF11!0.76!37.99!KLF11;;chr2:61108808..61108821,+!p3@REL!0.76!6.17!REL;;chr2:60780607..60780624,-!p2@BCL11A!0.75!15.32!BCL11A;;chr16:3313791..3313834,+!p2@ZNF263!0.75!10.94!ZNF263;;chr9:88969287..88969297,-!p3@ZCCHC6!0.75!6.37!ZCCHC6;;chr12:54694807..54694832,-!p3@NFE2!0.75!4.58!NFE2;;chr2:231090344..231090361,-!p3@SP110!0.75!4.58!SP110;;chr2:61108650..61108687,+!p2@REL!0.74!24.27!REL;;chr1:158979851..158979865,+!p5@IFI16!0.74!10.54!IFI16;;chr9:102584262..102584276,+!p1@NR4A3!0.73!10.54!NR4A3;;chr2:145282041..145282092,-!p8@ZEB2!0.73!6.96!ZEB2;;chr12:108154762..108154776,-!p4@PRDM4!0.73!4.38!PRDM4;;chr13:41593392..41593403,-!p7@ELF1!0.73!4.38!ELF1;;chr6:44233252..44233296,-!p1@NFKBIE!0.72!46.94!NFKBIE;;chr1:156470515..156470542,-!p2@MEF2D!0.72!24.86!MEF2D;;chr19:12405606..12405629,-!p2@ZNF44!0.72!8.95!ZNF44;;chr2:145274981..145274994,-!p9@ZEB2!0.72!6.56!ZEB2;;chr20:48807875..48807982,+!p2@CEBPB!0.71!103.24!CEBPB;;chr11:65686952..65686975,+!p5@DRAP1!0.71!25.66!DRAP1;;chr14:35872962..35873025,-!p3@NFKBIA!0.71!11.34!NFKBIA;;chr10:51572339..51572376,+!p4@NCOA4!0.71!10.14!NCOA4;;chr2:185463247..185463263,+!p1@ZNF804A!0.71!7.76!ZNF804A;;chr11:615570..615721,-!p2@IRF7!0.70!8.55!IRF7;;chr2:145277882..145277967,-!p3@ZEB2!0.70!7.36!ZEB2;;chr2:145277589..145277612,-!p12@ZEB2!0.70!3.98!ZEB2;;chr20:56195474..56195506,-!p1@ZBP1!0.70!3.98!ZBP1;;chr13:41593405..41593416,-!p9@ELF1!0.70!3.98!ELF1;;chr13:41240737..41240787,-!p1@FOXO1!0.69!52.71!FOXO1;;chr9:88969339..88969422,-!p2@ZCCHC6!0.69!34.41!ZCCHC6;;chrX:131623044..131623089,-!p1@MBNL3!0.69!18.10!MBNL3;;chr21:40177892..40177903,+!p2@ETS2!0.69!17.70!ETS2;;chr19:12075844..12075880,+!p3@ZNF763!0.69!7.16!ZNF763;;chr20:48807648..48807671,+!p9@CEBPB!0.69!5.97!CEBPB;;chr1:44679370..44679422,+!p3@DMAP1!0.69!5.37!DMAP1;;chr18:51750414..51750449,-!p5@MBD2!0.68!7.96!MBD2;;chr11:113930291..113930339,+!p2@ZBTB16!0.68!6.56!ZBTB16;;chr19:4067174..4067200,-!p9@ZBTB7A!0.68!4.77!ZBTB7A;;chr2:145274998..145275012,-!p13@ZEB2!0.68!4.38!ZEB2;;chr14:75746340..75746368,+!p3@FOS!0.68!3.78!FOS;;chrY:21906761..21906810,-!p2@KDM5D!0.68!3.78!KDM5D;;chr2:8822176..8822196,+!p1@ID2!0.67!605.10!ID2;;chr6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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002396;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor2.CNhs13207.11800-124C9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor2.CNhs13207.11800-124C9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor2.CNhs13207.11800-124C9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor2.CNhs13207.11800-124C9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14-CD16%252b%2520Monocytes%252c%2520donor2.CNhs13207.11800-124C9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11800-124C9
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011100
+|is_a=EFO:0002091;;FF:0011100
+|is_obsolete=
+|library_id=CNhs13207
+|library_id_phase_based=2:CNhs13207
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11800
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11800
 |name=CD14-CD16+ Monocytes, donor2
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13207,LSID1004,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=124
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=1.1296
 |sample_age=23
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=blood
 |top_motifs=NANOG{mouse}:2.4080182646;HMX1:2.3542865049;SPI1:2.26626138303;SPIB:1.97600189765;IRF1,2:1.93679522441;DMAP1_NCOR{1,2}_SMARC:1.73287153969;NFIL3:1.55117890689;ETS1,2:1.53954869679;IRF7:1.52352414656;TLX2:1.40679989398;RFX2..5_RFXANK_RFXAP:1.33155110197;ATF5_CREB3:1.32997327706;ELF1,2,4:1.29398270047;TGIF1:1.27861015028;FOXN1:1.13995945248;FOX{F1,F2,J1}:1.12020664594;SREBF1,2:1.10470413735;RUNX1..3:1.04264380606;HES1:1.04201549292;CREB1:1.01012904005;FOXO1,3,4:0.973187276259;MAFB:0.968671667617;FOX{I1,J2}:0.938401146783;NR6A1:0.911331752681;PAX2:0.869409443356;ALX1:0.853582417576;PAX4:0.821857631339;ESRRA:0.783366358803;EP300:0.741624793907;ATF4:0.694742215466;CDX1,2,4:0.649085608309;GLI1..3:0.638451597201;NFKB1_REL_RELA:0.638284021546;FOXA2:0.637401605663;TAL1_TCF{3,4,12}:0.57406012081;ESR1:0.564443236547;NKX2-2,8:0.560535154778;ZBTB16:0.558271105593;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.535699093578;FOX{D1,D2}:0.518845540521;FOXP3:0.476113597899;NR5A1,2:0.445074347417;TOPORS:0.434134680482;EBF1:0.403750687552;POU5F1:0.397335005147;ALX4:0.366945026556;PAX8:0.35545236494;ELK1,4_GABP{A,B1}:0.311167150136;HIF1A:0.310977363286;HOXA9_MEIS1:0.306556840762;IKZF2:0.305431664915;HMGA1,2:0.293876853314;CRX:0.290744672455;HBP1_HMGB_SSRP1_UBTF:0.282986290033;RORA:0.249463009241;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.195854125321;PAX3,7:0.191998747945;EN1,2:0.191202268722;ZNF148:0.178427907709;BPTF:0.165338568194;JUN:0.158551847134;T:0.154732341124;RXRA_VDR{dimer}:0.153145881788;FOXQ1:0.15229069546;HLF:0.143335094443;FOXP1:0.143259720948;TFAP4:0.142240721017;TFCP2:0.140130516814;PITX1..3:0.133240439932;HNF4A_NR2F1,2:0.0920756694724;CEBPA,B_DDIT3:0.0903183974318;NR1H4:0.0578265023987;MEF2{A,B,C,D}:-0.00522725746997;FOSL2:-0.0113963505278;FOXD3:-0.0125018929891;OCT4_SOX2{dimer}:-0.0372648834182;GATA6:-0.0416095646985;ATF2:-0.0591106092907;PPARG:-0.0763186014623;RBPJ:-0.143022463587;POU2F1..3:-0.179571683245;NFE2L2:-0.18183907171;MYB:-0.191009033974;BACH2:-0.196629112705;NFE2L1:-0.214449364016;GZF1:-0.217214668017;FOS_FOS{B,L1}_JUN{B,D}:-0.217767777816;PDX1:-0.239395276417;ATF6:-0.254203725182;RFX1:-0.259913599275;YY1:-0.275849847899;GATA4:-0.290100479347;STAT1,3:-0.305928925447;POU1F1:-0.318048315291;HOX{A5,B5}:-0.323028582031;VSX1,2:-0.341005226111;PBX1:-0.352260891192;NANOG:-0.358523037657;NKX2-3_NKX2-5:-0.362978765571;CUX2:-0.363310209386;NHLH1,2:-0.364293398887;AR:-0.36477503288;NFE2:-0.367513034527;MYFfamily:-0.397562334462;AHR_ARNT_ARNT2:-0.40468324211;STAT2,4,6:-0.409988154809;NFIX:-0.418028039174;SOX2:-0.445699609738;NKX3-1:-0.454940304317;PRRX1,2:-0.468077895772;REST:-0.471499155467;TFAP2{A,C}:-0.490550351736;SPZ1:-0.494695858299;MYOD1:-0.517218810043;MTF1:-0.547713269168;PAX1,9:-0.555625632531;SRF:-0.567465200859;DBP:-0.567716909286;BREu{core}:-0.576271285804;HNF1A:-0.609072600507;AIRE:-0.618904630728;SOX{8,9,10}:-0.65582814152;STAT5{A,B}:-0.681449541407;HOX{A6,A7,B6,B7}:-0.683275907189;ONECUT1,2:-0.68899804016;KLF4:-0.727796524608;ZEB1:-0.734050360044;RXR{A,B,G}:-0.734867818134;ZNF238:-0.756635980524;PAX5:-0.761636020048;NKX3-2:-0.780260449776;PRDM1:-0.793774293478;LHX3,4:-0.813146661775;HSF1,2:-0.814179259776;FOXL1:-0.818688290196;SOX5:-0.820324441636;NFY{A,B,C}:-0.829357645363;HOX{A4,D4}:-0.860586036566;E2F1..5:-0.870484723146;PATZ1:-0.873340128294;XBP1:-0.876875132121;NKX6-1,2:-0.922394227114;LEF1_TCF7_TCF7L1,2:-0.924563158241;EGR1..3:-0.926319875929;RREB1:-0.952417706238;SNAI1..3:-0.965999944783;ZFP161:-0.967140737129;ADNP_IRX_SIX_ZHX:-0.97805241983;TFAP2B:-0.980276408104;SMAD1..7,9:-0.983809514395;ZBTB6:-1.01494661563;ZNF423:-1.02398111364;IKZF1:-1.06181908896;MZF1:-1.06897929175;HAND1,2:-1.0735715335;UFEwm:-1.07521166689;EVI1:-1.08394901913;ARID5B:-1.10477950074;ZIC1..3:-1.11214987311;SP1:-1.11518970263;NRF1:-1.14296479339;MTE{core}:-1.16190863817;MED-1{core}:-1.16304172185;GCM1,2:-1.22188867313;TLX1..3_NFIC{dimer}:-1.24645368154;LMO2:-1.25996981584;HIC1:-1.27900095904;POU6F1:-1.31729781183;ZNF143:-1.32689261611;TBP:-1.32959246608;GTF2I:-1.33272576039;MYBL2:-1.34134593472;PAX6:-1.35656508406;TP53:-1.36565509179;GFI1B:-1.41242864078;MAZ:-1.41976249103;NKX2-1,4:-1.43277797137;GFI1:-1.44124385286;ZNF384:-1.44570493904;FOXM1:-1.47714037245;TFDP1:-1.50444091185;XCPE1{core}:-1.50934297061;CDC5L:-1.51179565405;TEAD1:-1.55158829289;bHLH_family:-1.58966232445;GTF2A1,2:-1.65240096494;NR3C1:-1.65346781035;TEF:-1.65367997402;NFATC1..3:-1.6587264916;SOX17:-1.86406772471;TBX4,5:-1.95929015295;POU3F1..4:-2.44945000511
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11800-124C9;search_select_hide=table117:FF:11800-124C9
 }}

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FF:11800-124C9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:21, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0