FF:11861-125A7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005739 | |DRA_sample_Accession=CAGE@SAMD00005739 | ||
|accession_numbers=CAGE;DRX008150;DRR009022;DRZ000447;DRZ001832 | |accession_numbers=CAGE;DRX008150;DRR009022;DRZ000447;DRZ001832;DRZ011797;DRZ013182 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.43!2690.27!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.97!937.77!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.71!506.65!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.70!497.42!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.34!218.03!TFEC;;chr6:36355431..36355466,-!p1@ETV7!2.18!150.41!ETV7;;chr6:106534192..106534224,+!p1@PRDM1!2.13!363.83!PRDM1;;chr11:47399947..47399961,-!p3@SPI1!2.10!123.69!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.08!218.03!RUNX3;;chr20:39317868..39317884,-!p1@MAFB!2.06!1268.94!MAFB;;chr2:70142232..70142251,+!p1@MXD1!2.05!598.02!MXD1;;chr11:64764435..64764449,-!p1@BATF2!2.05!151.07!BATF2;;chr7:128577972..128578047,+!p1@IRF5!2.04!166.25!IRF5;;chr10:35484053..35484076,+!p1@CREM!2.02!249.70!CREM;;chr5:131826457..131826514,-!p1@IRF1!1.97!3403.08!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.94!86.09!SPI1;;chr11:615942..615957,-!p1@IRF7!1.92!723.03!IRF7;;chr2:231084639..231084654,-!p2@SP110!1.87!118.75!SP110;;chr6:106534230..106534254,+!p2@PRDM1!1.86!173.83!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.84!81.47!ATF5;;chr11:47399996..47400014,-!p4@SPI1!1.83!66.96!SPI1;;chr1:158985493..158985535,+!p4@IFI16!1.74!81.14!IFI16;;chr10:64576105..64576133,-!p1@EGR2!1.73!105.88!EGR2;;chr14:75988771..75988826,+!p1@BATF!1.73!69.60!BATF;;chr11:47400032..47400043,-!p5@SPI1!1.73!52.45!SPI1;;chr21:36260295..36260310,-!p3@RUNX1!1.72!82.13!RUNX1;;chr14:75988831..75988847,+!p2@BATF!1.68!46.84!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.66!44.86!ZNF385A;;chr4:185395590..185395627,-!p3@IRF2!1.61!48.82!IRF2;;chr2:145277640..145277771,-!p1@ZEB2!1.58!467.73!ZEB2;;chr2:68592394..68592405,+!p2@PLEK!1.58!37.27!PLEK;;chr1:221052776..221052799,+!p1@HLX!1.57!63.66!HLX;;chr21:30671690..30671762,+!p2@BACH1!1.56!117.43!BACH1;;chr11:615570..615721,-!p2@IRF7!1.56!68.94!IRF7;;chr12:56415246..56415286,+!p2@IKZF4!1.56!35.62!IKZF4;;chr7:50344289..50344323,+!p1@IKZF1!1.56!34.96!IKZF1;;chr19:33793430..33793447,-!p1@CEBPA!1.55!138.87!CEBPA;;chr2:97202480..97202499,+!p1@ARID5A!1.53!317.32!ARID5A;;chr1:158979872..158979898,+!p3@IFI16!1.52!96.32!IFI16;;chr10:51572339..51572376,+!p4@NCOA4!1.52!70.92!NCOA4;;chr17:45810594..45810608,+!p1@TBX21!1.52!32.33!TBX21;;chr21:34442439..34442455,+!p1@OLIG1!1.52!32.00!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!1.51!454.21!ZNF267;;chr10:51572408..51572454,+!p3@NCOA4!1.50!173.50!NCOA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.50!30.68!ZBED1;;chr6:391743..391759,+!p1@IRF4!1.49!29.69!IRF4;;chr12:54694758..54694805,-!p1@NFE2!1.47!34.30!NFE2;;chrX:129244454..129244488,-!p1@ELF4!1.46!194.94!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.45!127.65!ETV6;;chr11:65430554..65430579,-!p3@RELA!1.45!67.62!RELA;;chr6:144385698..144385742,-!p2@PLAGL1!1.45!32.99!PLAGL1;;chr3:187455486..187455504,-!p6@BCL6!1.45!27.05!BCL6;;chr12:48298765..48298783,-!p2@VDR!1.43!52.78!VDR;;chr4:185395633..185395651,-!p2@IRF2!1.43!41.23!IRF2;;chr2:231090471..231090504,+!p2@SP140!1.43!26.06!SP140;;chr1:25256439..25256476,-!p3@RUNX3!1.43!26.06!RUNX3;;chr21:30672433..30672464,+!p6@BACH1!1.43!25.73!BACH1;;chr11:2292226..2292270,-!p1@ASCL2!1.41!24.74!ASCL2;;chr2:145275162..145275202,-!p2@ZEB2!1.40!138.54!ZEB2;;chr16:79634624..79634642,-!p1@MAF!1.40!91.70!MAF;;chr11:47400045..47400060,-!p6@SPI1!1.39!23.42!SPI1;;chr2:70314240..70314256,+!p4@PCBP1!1.36!44.20!PCBP1;;chr1:212782094..212782109,+!p1@ATF3!1.35!563.72!ATF3;;chr21:30671235..30671253,+!p1@BACH1!1.35!264.54!BACH1;;chr12:72056800..72056834,+!p1@THAP2!1.35!28.70!THAP2;;chr13:41593425..41593480,-!p1@ELF1!1.34!129.30!ELF1;;chr11:65430535..65430549,-!p4@RELA!1.34!24.41!RELA;;chr11:47399920..47399931,-!p7@SPI1!1.34!21.11!SPI1;;chr2:231090433..231090469,+!p1@SP140!1.34!21.11!SP140;;chr3:187455529..187455544,-!p5@BCL6!1.34!20.78!BCL6;;chr3:187455680..187455700,-!p4@BCL6!1.34!20.78!BCL6;;chr6:106535598..106535637,+!p7@PRDM1!1.34!20.78!PRDM1;;chrX:129244430..129244442,-!p5@ELF4!1.34!20.78!ELF4;;chr12:72056749..72056767,+!p6@THAP2!1.33!22.76!THAP2;;chr12:72056773..72056796,+!p3@THAP2!1.32!25.73!THAP2;;chr1:8484007..8484061,-!p13@RERE!1.32!25.07!RERE;;chr10:31288398..31288455,-!p2@ZNF438!1.32!23.09!ZNF438;;chr19:45251395..45251432,+!p8@BCL3!1.32!19.79!BCL3;;chr6:126240463..126240489,+!p6@NCOA7!1.31!21.77!NCOA7;;chr6:36355486..36355497,-!p3@ETV7!1.31!19.46!ETV7;;chr7:28725740..28725778,+!p1@CREB5!1.30!163.61!CREB5;;chr9:110250697..110250738,-!p2@KLF4!1.29!21.44!KLF4;;chr10:31288370..31288393,-!p3@ZNF438!1.29!18.47!ZNF438;;chr2:231084659..231084721,-!p1@SP110!1.28!409.02!SP110;;chr18:3449720..3449749,+!p2@TGIF1!1.28!37.93!TGIF1;;chr16:79634595..79634620,-!p2@MAF!1.28!32.33!MAF;;chr12:48298785..48298828,-!p1@VDR!1.27!92.03!VDR;;chr21:36421535..36421610,-!p2@RUNX1!1.26!60.69!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!1.26!43.21!BCL3;;chr16:89787973..89788001,+!p3@ZNF276!1.26!32.33!ZNF276;;chr7:150946376..150946389,-!p6@SMARCD3!1.26!17.15!SMARCD3;;chr19:45252008..45252024,+!p2@BCL3!1.23!52.45!BCL3;;chr19:13213662..13213686,-!p1@LYL1!1.23!23.42!LYL1;;chr9:110252035..110252057,-!p1@KLF4!1.22!244.42!KLF4;;chr16:3285119..3285133,-!p2@ZNF200!1.22!31.01!ZNF200;;chr10:35484090..35484104,+!p6@CREM!1.20!14.84!CREM;;chr17:38497662..38497713,+!p4@RARA!1.19!16.82!RARA;;chr1:221053049..221053075,+!p3@HLX!1.18!24.74!HLX;;chr19:45251943..45252006,+!p1@BCL3!1.16!350.63!BCL3;;chr8:116681123..116681143,-!p4@TRPS1!1.16!25.73!TRPS1;;chr14:74226961..74227020,-!p1@C14orf43!1.15!85.10!C14orf43;;chr14:74226747..74226779,-!p3@C14orf43!1.15!72.57!C14orf43;;chr6:15246200..15246214,+!p2@JARID2!1.15!36.61!JARID2;;chr19:45254529..45254561,+!p10@BCL3!1.15!17.81!BCL3;;chr20:48807351..48807384,+!p1@CEBPB!1.14!1285.10!CEBPB;;chr4:106068026..106068084,+!p1@TET2!1.14!115.12!TET2;;chr3:63898321..63898396,+!p3@ATXN7!1.14!29.69!ATXN7;;chr1:158985686..158985719,+!p15@IFI16!1.14!12.86!IFI16;;chrX:106960285..106960299,-!p1@TSC22D3!1.13!334.47!TSC22D3;;chr2:191885737..191885750,-!p4@STAT1!1.13!12.53!STAT1;;chr3:187455634..187455651,-!p7@BCL6!1.13!12.53!BCL6;;chr12:56415287..56415300,+!p5@IKZF4!1.13!12.53!IKZF4;;chr6:44233252..44233296,-!p1@NFKBIE!1.12!118.75!NFKBIE;;chr21:36260343..36260402,-!p6@RUNX1!1.12!19.46!RUNX1;;chr2:70167296..70167306,+!p3@MXD1!1.12!18.80!MXD1;;chr19:45971246..45971265,+!p1@FOSB!1.11!222.32!FOSB;;chr7:149470641..149470694,-!p1@ZNF467!1.11!54.10!ZNF467;;chr9:117150254..117150271,-!p1@AKNA!1.11!32.99!AKNA;;chr2:145277882..145277967,-!p3@ZEB2!1.11!20.45!ZEB2;;chr4:185395191..185395226,-!p4@IRF2!1.11!16.49!IRF2;;chr19:45254481..45254495,+!p13@BCL3!1.11!11.87!BCL3;;chr1:221052733..221052749,+!p2@HLX!1.10!15.17!HLX;;chr2:231084820..231084836,-!p5@SP110!1.10!13.19!SP110;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.54!TFEC;;chr3:187463179..187463201,-!p2@BCL6!1.09!46.84!BCL6;;chr2:231280954..231280965,+!p2@SP100!1.09!20.78!SP100;;chr4:103422499..103422632,+!p1@NFKB1!1.07!225.29!NFKB1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.07!58.38!LRRFIP1;;chr12:96588279..96588299,+!p4@ELK3!1.07!51.46!ELK3;;chr8:71316428..71316459,-!p2@NCOA2!1.07!18.14!NCOA2;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.82!ZNF385A;;chr10:104155480..104155534,+!p2@NFKB2!1.06!67.95!NFKB2;;chr17:38498402..38498445,+!p3@RARA!1.06!38.26!RARA;;chr14:35872453..35872485,-!p2@NFKBIA!1.06!26.39!NFKBIA;;chr8:116681150..116681164,-!p5@TRPS1!1.06!20.78!TRPS1;;chr6:15246261..15246312,+!p1@JARID2!1.05!253.00!JARID2;;chr1:158979792..158979814,+!p2@IFI16!1.05!99.62!IFI16;;chr22:38597987..38598021,+!p2@MAFF!1.05!63.66!MAFF;;chr3:107318352..107318392,+!p14@BBX!1.05!10.23!BBX;;chr20:56195474..56195506,-!p1@ZBP1!1.05!10.23!ZBP1;;chr21:36260325..36260341,-!p14@RUNX1!1.05!10.23!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.04!63.33!CSRNP1;;chr6:126240380..126240430,+!p2@NCOA7!1.04!26.06!NCOA7;;chr12:56753869..56753930,-!p1@STAT2!1.03!428.81!STAT2;;chr10:35484804..35484902,+!p2@CREM!1.03!37.60!CREM;;chr7:17338266..17338282,+!p1@AHR!1.02!102.91!AHR;;chr9:88969303..88969335,-!p1@ZCCHC6!1.02!90.71!ZCCHC6;;chr9:3525727..3525828,-!p2@RFX3!1.02!24.41!RFX3;;chr2:28618532..28618610,+!p4@FOSL2!1.02!16.49!FOSL2;;chr2:231077626..231077651,-!p6@SP110!1.01!11.87!SP110;;chr19:45254508..45254528,+!p12@BCL3!1.01!10.23!BCL3;;chr3:107318229..107318239,+!p17@BBX!1.01!9.24!BBX;;chr7:50343634..50343717,+!p2@IKZF1!1.01!9.24!IKZF1;;chr2:145275228..145275241,-!p11@ZEB2!1.00!10.89!ZEB2;;chr13:41593392..41593403,-!p7@ELF1!1.00!8.91!ELF1;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.74!POU2F2;;chr18:3449695..3449712,+!p9@TGIF1!0.99!13.52!TGIF1;;chr2:70142189..70142223,+!p2@MXD1!0.98!63.00!MXD1;;chr6:106535687..106535706,+!p8@PRDM1!0.98!8.58!PRDM1;;chr7:137620684..137620711,-!p4@CREB3L2!0.98!8.58!CREB3L2;;chr4:140098339..140098392,-!p1@ELF2!0.97!71.25!ELF2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.97!36.28!LRRFIP2;;chr1:158985469..158985489,+!p7@IFI16!0.97!9.90!IFI16;;chr1:25256175..25256228,-!p5@RUNX3!0.97!8.25!RUNX3;;chr20:47894569..47894799,-!p1@ZNFX1!0.96!219.35!ZNFX1;;chrX:106960180..106960197,-!p2@TSC22D3!0.96!32.00!TSC22D3;;chr21:36259445..36259519,-!p4@RUNX1!0.96!23.42!RUNX1;;chr7:99156393..99156433,+!p6@ZNF655!0.96!18.80!ZNF655;;chr1:158979851..158979865,+!p5@IFI16!0.96!18.47!IFI16;;chr17:38474489..38474548,+!p1@RARA!0.95!255.96!RARA;;chr21:36260980..36261011,-!p1@RUNX1!0.95!235.84!RUNX1;;chr7:139762641..139762768,-!p1@PARP12!0.95!110.17!PARP12;;chr8:116681194..116681214,-!p1@TRPS1!0.95!75.87!TRPS1;;chr17:38498594..38498661,+!p2@RARA!0.95!27.05!RARA;;chr1:158979922..158979933,+!p13@IFI16!0.95!7.92!IFI16;;chr1:158985457..158985468,+!p12@IFI16!0.95!7.92!IFI16;;chr21:30672734..30672748,+!p11@BACH1!0.95!7.92!BACH1;;chr5:172483347..172483407,+!p1@C5orf41!0.94!60.36!CREBRF;;chr10:104154246..104154347,+!p3@NFKB2!0.94!48.49!NFKB2;;chr14:62162285..62162296,+!p3@HIF1A!0.94!41.56!HIF1A;;chr18:3449586..3449617,+!p8@TGIF1!0.94!12.53!TGIF1;;chr16:3285144..3285191,-!p1@ZNF200!0.93!38.26!ZNF200;;chr20:48807615..48807644,+!p6@CEBPB!0.93!12.86!CEBPB;;chr3:39195139..39195150,-!p3@CSRNP1!0.93!9.57!CSRNP1;;chr1:221052840..221052875,+!p4@HLX!0.93!8.91!HLX;;chr2:145277589.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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.43!2690.27!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.97!937.77!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.71!506.65!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.70!497.42!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.34!218.03!TFEC;;chr6:36355431..36355466,-!p1@ETV7!2.18!150.41!ETV7;;chr6:106534192..106534224,+!p1@PRDM1!2.13!363.83!PRDM1;;chr11:47399947..47399961,-!p3@SPI1!2.10!123.69!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.08!218.03!RUNX3;;chr20:39317868..39317884,-!p1@MAFB!2.06!1268.94!MAFB;;chr2:70142232..70142251,+!p1@MXD1!2.05!598.02!MXD1;;chr11:64764435..64764449,-!p1@BATF2!2.05!151.07!BATF2;;chr7:128577972..128578047,+!p1@IRF5!2.04!166.25!IRF5;;chr10:35484053..35484076,+!p1@CREM!2.02!249.70!CREM;;chr5:131826457..131826514,-!p1@IRF1!1.97!3403.08!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.94!86.09!SPI1;;chr11:615942..615957,-!p1@IRF7!1.92!723.03!IRF7;;chr2:231084639..231084654,-!p2@SP110!1.87!118.75!SP110;;chr6:106534230..106534254,+!p2@PRDM1!1.86!173.83!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.84!81.47!ATF5;;chr11:47399996..47400014,-!p4@SPI1!1.83!66.96!SPI1;;chr1:158985493..158985535,+!p4@IFI16!1.74!81.14!IFI16;;chr10:64576105..64576133,-!p1@EGR2!1.73!105.88!EGR2;;chr14:75988771..75988826,+!p1@BATF!1.73!69.60!BATF;;chr11:47400032..47400043,-!p5@SPI1!1.73!52.45!SPI1;;chr21:36260295..36260310,-!p3@RUNX1!1.72!82.13!RUNX1;;chr14:75988831..75988847,+!p2@BATF!1.68!46.84!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.66!44.86!ZNF385A;;chr4:185395590..185395627,-!p3@IRF2!1.61!48.82!IRF2;;chr2:145277640..145277771,-!p1@ZEB2!1.58!467.73!ZEB2;;chr2:68592394..68592405,+!p2@PLEK!1.58!37.27!PLEK;;chr1:221052776..221052799,+!p1@HLX!1.57!63.66!HLX;;chr21:30671690..30671762,+!p2@BACH1!1.56!117.43!BACH1;;chr11:615570..615721,-!p2@IRF7!1.56!68.94!IRF7;;chr12:56415246..56415286,+!p2@IKZF4!1.56!35.62!IKZF4;;chr7:50344289..50344323,+!p1@IKZF1!1.56!34.96!IKZF1;;chr19:33793430..33793447,-!p1@CEBPA!1.55!138.87!CEBPA;;chr2:97202480..97202499,+!p1@ARID5A!1.53!317.32!ARID5A;;chr1:158979872..158979898,+!p3@IFI16!1.52!96.32!IFI16;;chr10:51572339..51572376,+!p4@NCOA4!1.52!70.92!NCOA4;;chr17:45810594..45810608,+!p1@TBX21!1.52!32.33!TBX21;;chr21:34442439..34442455,+!p1@OLIG1!1.52!32.00!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!1.51!454.21!ZNF267;;chr10:51572408..51572454,+!p3@NCOA4!1.50!173.50!NCOA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.50!30.68!ZBED1;;chr6:391743..391759,+!p1@IRF4!1.49!29.69!IRF4;;chr12:54694758..54694805,-!p1@NFE2!1.47!34.30!NFE2;;chrX:129244454..129244488,-!p1@ELF4!1.46!194.94!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.45!127.65!ETV6;;chr11:65430554..65430579,-!p3@RELA!1.45!67.62!RELA;;chr6:144385698..144385742,-!p2@PLAGL1!1.45!32.99!PLAGL1;;chr3:187455486..187455504,-!p6@BCL6!1.45!27.05!BCL6;;chr12:48298765..48298783,-!p2@VDR!1.43!52.78!VDR;;chr4:185395633..185395651,-!p2@IRF2!1.43!41.23!IRF2;;chr2:231090471..231090504,+!p2@SP140!1.43!26.06!SP140;;chr1:25256439..25256476,-!p3@RUNX3!1.43!26.06!RUNX3;;chr21:30672433..30672464,+!p6@BACH1!1.43!25.73!BACH1;;chr11:2292226..2292270,-!p1@ASCL2!1.41!24.74!ASCL2;;chr2:145275162..145275202,-!p2@ZEB2!1.40!138.54!ZEB2;;chr16:79634624..79634642,-!p1@MAF!1.40!91.70!MAF;;chr11:47400045..47400060,-!p6@SPI1!1.39!23.42!SPI1;;chr2:70314240..70314256,+!p4@PCBP1!1.36!44.20!PCBP1;;chr1:212782094..212782109,+!p1@ATF3!1.35!563.72!ATF3;;chr21:30671235..30671253,+!p1@BACH1!1.35!264.54!BACH1;;chr12:72056800..72056834,+!p1@THAP2!1.35!28.70!THAP2;;chr13:41593425..41593480,-!p1@ELF1!1.34!129.30!ELF1;;chr11:65430535..65430549,-!p4@RELA!1.34!24.41!RELA;;chr11:47399920..47399931,-!p7@SPI1!1.34!21.11!SPI1;;chr2:231090433..231090469,+!p1@SP140!1.34!21.11!SP140;;chr3:187455529..187455544,-!p5@BCL6!1.34!20.78!BCL6;;chr3:187455680..187455700,-!p4@BCL6!1.34!20.78!BCL6;;chr6:106535598..106535637,+!p7@PRDM1!1.34!20.78!PRDM1;;chrX:129244430..129244442,-!p5@ELF4!1.34!20.78!ELF4;;chr12:72056749..72056767,+!p6@THAP2!1.33!22.76!THAP2;;chr12:72056773..72056796,+!p3@THAP2!1.32!25.73!THAP2;;chr1:8484007..8484061,-!p13@RERE!1.32!25.07!RERE;;chr10:31288398..31288455,-!p2@ZNF438!1.32!23.09!ZNF438;;chr19:45251395..45251432,+!p8@BCL3!1.32!19.79!BCL3;;chr6:126240463..126240489,+!p6@NCOA7!1.31!21.77!NCOA7;;chr6:36355486..36355497,-!p3@ETV7!1.31!19.46!ETV7;;chr7:28725740..28725778,+!p1@CREB5!1.30!163.61!CREB5;;chr9:110250697..110250738,-!p2@KLF4!1.29!21.44!KLF4;;chr10:31288370..31288393,-!p3@ZNF438!1.29!18.47!ZNF438;;chr2:231084659..231084721,-!p1@SP110!1.28!409.02!SP110;;chr18:3449720..3449749,+!p2@TGIF1!1.28!37.93!TGIF1;;chr16:79634595..79634620,-!p2@MAF!1.28!32.33!MAF;;chr12:48298785..48298828,-!p1@VDR!1.27!92.03!VDR;;chr21:36421535..36421610,-!p2@RUNX1!1.26!60.69!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!1.26!43.21!BCL3;;chr16:89787973..89788001,+!p3@ZNF276!1.26!32.33!ZNF276;;chr7:150946376..150946389,-!p6@SMARCD3!1.26!17.15!SMARCD3;;chr19:45252008..45252024,+!p2@BCL3!1.23!52.45!BCL3;;chr19:13213662..13213686,-!p1@LYL1!1.23!23.42!LYL1;;chr9:110252035..110252057,-!p1@KLF4!1.22!244.42!KLF4;;chr16:3285119..3285133,-!p2@ZNF200!1.22!31.01!ZNF200;;chr10:35484090..35484104,+!p6@CREM!1.20!14.84!CREM;;chr17:38497662..38497713,+!p4@RARA!1.19!16.82!RARA;;chr1:221053049..221053075,+!p3@HLX!1.18!24.74!HLX;;chr19:45251943..45252006,+!p1@BCL3!1.16!350.63!BCL3;;chr8:116681123..116681143,-!p4@TRPS1!1.16!25.73!TRPS1;;chr14:74226961..74227020,-!p1@C14orf43!1.15!85.10!C14orf43;;chr14:74226747..74226779,-!p3@C14orf43!1.15!72.57!C14orf43;;chr6:15246200..15246214,+!p2@JARID2!1.15!36.61!JARID2;;chr19:45254529..45254561,+!p10@BCL3!1.15!17.81!BCL3;;chr20:48807351..48807384,+!p1@CEBPB!1.14!1285.10!CEBPB;;chr4:106068026..106068084,+!p1@TET2!1.14!115.12!TET2;;chr3:63898321..63898396,+!p3@ATXN7!1.14!29.69!ATXN7;;chr1:158985686..158985719,+!p15@IFI16!1.14!12.86!IFI16;;chrX:106960285..106960299,-!p1@TSC22D3!1.13!334.47!TSC22D3;;chr2:191885737..191885750,-!p4@STAT1!1.13!12.53!STAT1;;chr3:187455634..187455651,-!p7@BCL6!1.13!12.53!BCL6;;chr12:56415287..56415300,+!p5@IKZF4!1.13!12.53!IKZF4;;chr6:44233252..44233296,-!p1@NFKBIE!1.12!118.75!NFKBIE;;chr21:36260343..36260402,-!p6@RUNX1!1.12!19.46!RUNX1;;chr2:70167296..70167306,+!p3@MXD1!1.12!18.80!MXD1;;chr19:45971246..45971265,+!p1@FOSB!1.11!222.32!FOSB;;chr7:149470641..149470694,-!p1@ZNF467!1.11!54.10!ZNF467;;chr9:117150254..117150271,-!p1@AKNA!1.11!32.99!AKNA;;chr2:145277882..145277967,-!p3@ZEB2!1.11!20.45!ZEB2;;chr4:185395191..185395226,-!p4@IRF2!1.11!16.49!IRF2;;chr19:45254481..45254495,+!p13@BCL3!1.11!11.87!BCL3;;chr1:221052733..221052749,+!p2@HLX!1.10!15.17!HLX;;chr2:231084820..231084836,-!p5@SP110!1.10!13.19!SP110;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.54!TFEC;;chr3:187463179..187463201,-!p2@BCL6!1.09!46.84!BCL6;;chr2:231280954..231280965,+!p2@SP100!1.09!20.78!SP100;;chr4:103422499..103422632,+!p1@NFKB1!1.07!225.29!NFKB1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.07!58.38!LRRFIP1;;chr12:96588279..96588299,+!p4@ELK3!1.07!51.46!ELK3;;chr8:71316428..71316459,-!p2@NCOA2!1.07!18.14!NCOA2;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.82!ZNF385A;;chr10:104155480..104155534,+!p2@NFKB2!1.06!67.95!NFKB2;;chr17:38498402..38498445,+!p3@RARA!1.06!38.26!RARA;;chr14:35872453..35872485,-!p2@NFKBIA!1.06!26.39!NFKBIA;;chr8:116681150..116681164,-!p5@TRPS1!1.06!20.78!TRPS1;;chr6:15246261..15246312,+!p1@JARID2!1.05!253.00!JARID2;;chr1:158979792..158979814,+!p2@IFI16!1.05!99.62!IFI16;;chr22:38597987..38598021,+!p2@MAFF!1.05!63.66!MAFF;;chr3:107318352..107318392,+!p14@BBX!1.05!10.23!BBX;;chr20:56195474..56195506,-!p1@ZBP1!1.05!10.23!ZBP1;;chr21:36260325..36260341,-!p14@RUNX1!1.05!10.23!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.04!63.33!CSRNP1;;chr6:126240380..126240430,+!p2@NCOA7!1.04!26.06!NCOA7;;chr12:56753869..56753930,-!p1@STAT2!1.03!428.81!STAT2;;chr10:35484804..35484902,+!p2@CREM!1.03!37.60!CREM;;chr7:17338266..17338282,+!p1@AHR!1.02!102.91!AHR;;chr9:88969303..88969335,-!p1@ZCCHC6!1.02!90.71!ZCCHC6;;chr9:3525727..3525828,-!p2@RFX3!1.02!24.41!RFX3;;chr2:28618532..28618610,+!p4@FOSL2!1.02!16.49!FOSL2;;chr2:231077626..231077651,-!p6@SP110!1.01!11.87!SP110;;chr19:45254508..45254528,+!p12@BCL3!1.01!10.23!BCL3;;chr3:107318229..107318239,+!p17@BBX!1.01!9.24!BBX;;chr7:50343634..50343717,+!p2@IKZF1!1.01!9.24!IKZF1;;chr2:145275228..145275241,-!p11@ZEB2!1.00!10.89!ZEB2;;chr13:41593392..41593403,-!p7@ELF1!1.00!8.91!ELF1;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.74!POU2F2;;chr18:3449695..3449712,+!p9@TGIF1!0.99!13.52!TGIF1;;chr2:70142189..70142223,+!p2@MXD1!0.98!63.00!MXD1;;chr6:106535687..106535706,+!p8@PRDM1!0.98!8.58!PRDM1;;chr7:137620684..137620711,-!p4@CREB3L2!0.98!8.58!CREB3L2;;chr4:140098339..140098392,-!p1@ELF2!0.97!71.25!ELF2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.97!36.28!LRRFIP2;;chr1:158985469..158985489,+!p7@IFI16!0.97!9.90!IFI16;;chr1:25256175..25256228,-!p5@RUNX3!0.97!8.25!RUNX3;;chr20:47894569..47894799,-!p1@ZNFX1!0.96!219.35!ZNFX1;;chrX:106960180..106960197,-!p2@TSC22D3!0.96!32.00!TSC22D3;;chr21:36259445..36259519,-!p4@RUNX1!0.96!23.42!RUNX1;;chr7:99156393..99156433,+!p6@ZNF655!0.96!18.80!ZNF655;;chr1:158979851..158979865,+!p5@IFI16!0.96!18.47!IFI16;;chr17:38474489..38474548,+!p1@RARA!0.95!255.96!RARA;;chr21:36260980..36261011,-!p1@RUNX1!0.95!235.84!RUNX1;;chr7:139762641..139762768,-!p1@PARP12!0.95!110.17!PARP12;;chr8:116681194..116681214,-!p1@TRPS1!0.95!75.87!TRPS1;;chr17:38498594..38498661,+!p2@RARA!0.95!27.05!RARA;;chr1:158979922..158979933,+!p13@IFI16!0.95!7.92!IFI16;;chr1:158985457..158985468,+!p12@IFI16!0.95!7.92!IFI16;;chr21:30672734..30672748,+!p11@BACH1!0.95!7.92!BACH1;;chr5:172483347..172483407,+!p1@C5orf41!0.94!60.36!CREBRF;;chr10:104154246..104154347,+!p3@NFKB2!0.94!48.49!NFKB2;;chr14:62162285..62162296,+!p3@HIF1A!0.94!41.56!HIF1A;;chr18:3449586..3449617,+!p8@TGIF1!0.94!12.53!TGIF1;;chr16:3285144..3285191,-!p1@ZNF200!0.93!38.26!ZNF200;;chr20:48807615..48807644,+!p6@CEBPB!0.93!12.86!CEBPB;;chr3:39195139..39195150,-!p3@CSRNP1!0.93!9.57!CSRNP1;;chr1:221052840..221052875,+!p4@HLX!0.93!8.91!HLX;;chr2:145277589.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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11861-125A7 | |fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11861-125A7 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11861-125A7 | |id=FF:11861-125A7 | ||
|is_a=EFO:0002091;;FF:0011443 | |is_a=EFO:0002091;;FF:0011443 | ||
Line 46: | Line 52: | ||
|library_id=CNhs13466 | |library_id=CNhs13466 | ||
|library_id_phase_based=2:CNhs13466 | |library_id_phase_based=2:CNhs13466 | ||
|name= | |microRNAs= | ||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11861 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11861 | |||
|name=CD14+ monocytes - treated with IFN + N-hexane, donor1 | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage= | |profile_hcage=CNhs13466,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 90: | Line 101: | ||
|top_motifs=STAT2,4,6:4.70537868478;STAT1,3:4.19777384016;IRF7:4.09485794335;IRF1,2:3.78873340626;STAT5{A,B}:3.17986788248;NFE2L2:2.81632113569;CEBPA,B_DDIT3:2.61671126687;SPI1:2.51429316509;EP300:2.45712261662;SPIB:2.4344380225;NANOG{mouse}:2.4275918856;SREBF1,2:2.22689717353;NFE2:2.08185698893;PAX2:1.99896406771;TLX2:1.99083012476;FOXN1:1.93154158343;DMAP1_NCOR{1,2}_SMARC:1.90478852849;ETS1,2:1.90381330735;FOSL2:1.82721868797;NR1H4:1.73415267894;NFIL3:1.70295662128;PDX1:1.61016689175;BACH2:1.60218812631;NR6A1:1.52158559062;HLF:1.4874045667;FOS_FOS{B,L1}_JUN{B,D}:1.48134809766;FOXP3:1.41473686674;ELF1,2,4:1.37862088814;NFE2L1:1.36759450907;RXRA_VDR{dimer}:1.26606474117;RUNX1..3:1.20463389224;ATF5_CREB3:1.1934738105;ATF6:1.11993997538;TFCP2:1.0865884932;NFKB1_REL_RELA:1.07091507462;TGIF1:1.00653876645;ESRRA:0.973942640884;SPZ1:0.916869485405;FOXD3:0.851763830691;CDX1,2,4:0.799616746575;HBP1_HMGB_SSRP1_UBTF:0.792167872327;ATF4:0.78533015004;CREB1:0.760939076168;HMX1:0.734820806904;NKX3-2:0.660311070662;ALX4:0.651298177497;MAFB:0.576201876006;FOX{D1,D2}:0.452751769441;BPTF:0.451037930638;GLI1..3:0.444311292931;HIF1A:0.441419874746;ATF2:0.423729595058;HMGA1,2:0.379413274207;PAX3,7:0.366419361835;SMAD1..7,9:0.316430169265;PITX1..3:0.307559809526;FOX{F1,F2,J1}:0.22540526089;HSF1,2:0.224913154877;ESR1:0.198069947352;ZBTB16:0.19143569643;GATA4:0.189040181499;JUN:0.169319342044;MYB:0.153029437554;IKZF2:0.122868720316;PRDM1:0.0682335548746;NKX2-2,8:0.0466795207044;AHR_ARNT_ARNT2:0.0399329991483;FOXO1,3,4:0.0102481316093;TFAP4:-0.00927754575234;EN1,2:-0.0258440272738;XBP1:-0.0357990223858;RFX2..5_RFXANK_RFXAP:-0.079496591919;SRF:-0.0931907627491;MYFfamily:-0.135366708958;RXR{A,B,G}:-0.137808737499;NFIX:-0.163640959628;DBP:-0.200071206457;HOX{A6,A7,B6,B7}:-0.218049004918;NFATC1..3:-0.27205286285;PAX1,9:-0.296792897761;HNF4A_NR2F1,2:-0.298794090223;MZF1:-0.306755860215;NANOG:-0.330577302004;ZNF148:-0.381197626214;HES1:-0.392048672958;FOXM1:-0.438679382977;PAX4:-0.445239520235;TAL1_TCF{3,4,12}:-0.445751603225;PATZ1:-0.453484371917;POU6F1:-0.45999065526;TBP:-0.474444212315;VSX1,2:-0.488153116448;ZNF238:-0.525310840083;REST:-0.540311302631;FOXP1:-0.56028243324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.568092050937;GATA6:-0.56861029246;POU1F1:-0.577777946343;IKZF1:-0.582627995881;NHLH1,2:-0.584711373258;CUX2:-0.59232384782;TOPORS:-0.594050974539;CRX:-0.601290196973;PAX8:-0.605580766954;MED-1{core}:-0.609005787913;ALX1:-0.61228488441;NKX6-1,2:-0.61932717213;HNF1A:-0.625752733134;MYOD1:-0.633565337413;OCT4_SOX2{dimer}:-0.64312698855;POU2F1..3:-0.657532231334;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.678864346092;PRRX1,2:-0.700957921399;TFAP2{A,C}:-0.705400978065;GCM1,2:-0.720302198655;POU5F1:-0.724418993284;ZBTB6:-0.749250312702;FOXA2:-0.777020794745;FOXL1:-0.801375097656;PPARG:-0.81776638652;EGR1..3:-0.829123415155;EBF1:-0.838728571941;MTF1:-0.839077997137;HAND1,2:-0.851108389561;RREB1:-0.858327275288;HOXA9_MEIS1:-0.873822929955;SOX2:-0.928036477377;MEF2{A,B,C,D}:-0.95228085241;NR3C1:-0.963677548861;EVI1:-0.96539257079;KLF4:-0.998306959656;UFEwm:-1.00209042298;MTE{core}:-1.01774206735;SOX5:-1.01966972185;HOX{A5,B5}:-1.02501963438;TFAP2B:-1.03349264386;ZEB1:-1.03858488105;ZFP161:-1.06484240051;PAX6:-1.08268839482;LMO2:-1.10585933826;MAZ:-1.10604300365;NKX3-1:-1.11755502671;AIRE:-1.11872968741;GTF2I:-1.16521155758;GZF1:-1.16997494583;ZIC1..3:-1.17070925061;SP1:-1.18849453813;TP53:-1.2041366521;FOXQ1:-1.22151900961;TLX1..3_NFIC{dimer}:-1.23368750399;AR:-1.24237562412;SNAI1..3:-1.24327829034;GTF2A1,2:-1.28202079561;XCPE1{core}:-1.29271983034;ADNP_IRX_SIX_ZHX:-1.35097000085;RFX1:-1.35524699211;TEF:-1.38490265055;ZNF423:-1.41836564524;E2F1..5:-1.43464291791;RORA:-1.44774781577;POU3F1..4:-1.45671914342;RBPJ:-1.46807525209;TEAD1:-1.47390811823;YY1:-1.49980731983;ELK1,4_GABP{A,B1}:-1.50882582669;TFDP1:-1.54226786445;MYBL2:-1.5683296863;BREu{core}:-1.60195131181;PAX5:-1.61130630502;SOX{8,9,10}:-1.66094790475;HIC1:-1.68125378389;GFI1B:-1.72784093611;NKX2-3_NKX2-5:-1.85140101589;ZNF384:-1.85820400698;NR5A1,2:-1.85943501567;FOX{I1,J2}:-1.89332519421;HOX{A4,D4}:-1.90085006671;ARID5B:-1.9553570314;ONECUT1,2:-1.98231990822;NKX2-1,4:-1.99434837;T:-2.04701019195;CDC5L:-2.11331998422;TBX4,5:-2.15614518872;NFY{A,B,C}:-2.23019308241;SOX17:-2.24651435583;bHLH_family:-2.25212047782;GFI1:-2.28559443891;NRF1:-2.3106089165;LEF1_TCF7_TCF7L1,2:-2.32050845237;ZNF143:-2.63858109724;LHX3,4:-2.69517806006;PBX1:-2.87376277792 | |top_motifs=STAT2,4,6:4.70537868478;STAT1,3:4.19777384016;IRF7:4.09485794335;IRF1,2:3.78873340626;STAT5{A,B}:3.17986788248;NFE2L2:2.81632113569;CEBPA,B_DDIT3:2.61671126687;SPI1:2.51429316509;EP300:2.45712261662;SPIB:2.4344380225;NANOG{mouse}:2.4275918856;SREBF1,2:2.22689717353;NFE2:2.08185698893;PAX2:1.99896406771;TLX2:1.99083012476;FOXN1:1.93154158343;DMAP1_NCOR{1,2}_SMARC:1.90478852849;ETS1,2:1.90381330735;FOSL2:1.82721868797;NR1H4:1.73415267894;NFIL3:1.70295662128;PDX1:1.61016689175;BACH2:1.60218812631;NR6A1:1.52158559062;HLF:1.4874045667;FOS_FOS{B,L1}_JUN{B,D}:1.48134809766;FOXP3:1.41473686674;ELF1,2,4:1.37862088814;NFE2L1:1.36759450907;RXRA_VDR{dimer}:1.26606474117;RUNX1..3:1.20463389224;ATF5_CREB3:1.1934738105;ATF6:1.11993997538;TFCP2:1.0865884932;NFKB1_REL_RELA:1.07091507462;TGIF1:1.00653876645;ESRRA:0.973942640884;SPZ1:0.916869485405;FOXD3:0.851763830691;CDX1,2,4:0.799616746575;HBP1_HMGB_SSRP1_UBTF:0.792167872327;ATF4:0.78533015004;CREB1:0.760939076168;HMX1:0.734820806904;NKX3-2:0.660311070662;ALX4:0.651298177497;MAFB:0.576201876006;FOX{D1,D2}:0.452751769441;BPTF:0.451037930638;GLI1..3:0.444311292931;HIF1A:0.441419874746;ATF2:0.423729595058;HMGA1,2:0.379413274207;PAX3,7:0.366419361835;SMAD1..7,9:0.316430169265;PITX1..3:0.307559809526;FOX{F1,F2,J1}:0.22540526089;HSF1,2:0.224913154877;ESR1:0.198069947352;ZBTB16:0.19143569643;GATA4:0.189040181499;JUN:0.169319342044;MYB:0.153029437554;IKZF2:0.122868720316;PRDM1:0.0682335548746;NKX2-2,8:0.0466795207044;AHR_ARNT_ARNT2:0.0399329991483;FOXO1,3,4:0.0102481316093;TFAP4:-0.00927754575234;EN1,2:-0.0258440272738;XBP1:-0.0357990223858;RFX2..5_RFXANK_RFXAP:-0.079496591919;SRF:-0.0931907627491;MYFfamily:-0.135366708958;RXR{A,B,G}:-0.137808737499;NFIX:-0.163640959628;DBP:-0.200071206457;HOX{A6,A7,B6,B7}:-0.218049004918;NFATC1..3:-0.27205286285;PAX1,9:-0.296792897761;HNF4A_NR2F1,2:-0.298794090223;MZF1:-0.306755860215;NANOG:-0.330577302004;ZNF148:-0.381197626214;HES1:-0.392048672958;FOXM1:-0.438679382977;PAX4:-0.445239520235;TAL1_TCF{3,4,12}:-0.445751603225;PATZ1:-0.453484371917;POU6F1:-0.45999065526;TBP:-0.474444212315;VSX1,2:-0.488153116448;ZNF238:-0.525310840083;REST:-0.540311302631;FOXP1:-0.56028243324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.568092050937;GATA6:-0.56861029246;POU1F1:-0.577777946343;IKZF1:-0.582627995881;NHLH1,2:-0.584711373258;CUX2:-0.59232384782;TOPORS:-0.594050974539;CRX:-0.601290196973;PAX8:-0.605580766954;MED-1{core}:-0.609005787913;ALX1:-0.61228488441;NKX6-1,2:-0.61932717213;HNF1A:-0.625752733134;MYOD1:-0.633565337413;OCT4_SOX2{dimer}:-0.64312698855;POU2F1..3:-0.657532231334;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.678864346092;PRRX1,2:-0.700957921399;TFAP2{A,C}:-0.705400978065;GCM1,2:-0.720302198655;POU5F1:-0.724418993284;ZBTB6:-0.749250312702;FOXA2:-0.777020794745;FOXL1:-0.801375097656;PPARG:-0.81776638652;EGR1..3:-0.829123415155;EBF1:-0.838728571941;MTF1:-0.839077997137;HAND1,2:-0.851108389561;RREB1:-0.858327275288;HOXA9_MEIS1:-0.873822929955;SOX2:-0.928036477377;MEF2{A,B,C,D}:-0.95228085241;NR3C1:-0.963677548861;EVI1:-0.96539257079;KLF4:-0.998306959656;UFEwm:-1.00209042298;MTE{core}:-1.01774206735;SOX5:-1.01966972185;HOX{A5,B5}:-1.02501963438;TFAP2B:-1.03349264386;ZEB1:-1.03858488105;ZFP161:-1.06484240051;PAX6:-1.08268839482;LMO2:-1.10585933826;MAZ:-1.10604300365;NKX3-1:-1.11755502671;AIRE:-1.11872968741;GTF2I:-1.16521155758;GZF1:-1.16997494583;ZIC1..3:-1.17070925061;SP1:-1.18849453813;TP53:-1.2041366521;FOXQ1:-1.22151900961;TLX1..3_NFIC{dimer}:-1.23368750399;AR:-1.24237562412;SNAI1..3:-1.24327829034;GTF2A1,2:-1.28202079561;XCPE1{core}:-1.29271983034;ADNP_IRX_SIX_ZHX:-1.35097000085;RFX1:-1.35524699211;TEF:-1.38490265055;ZNF423:-1.41836564524;E2F1..5:-1.43464291791;RORA:-1.44774781577;POU3F1..4:-1.45671914342;RBPJ:-1.46807525209;TEAD1:-1.47390811823;YY1:-1.49980731983;ELK1,4_GABP{A,B1}:-1.50882582669;TFDP1:-1.54226786445;MYBL2:-1.5683296863;BREu{core}:-1.60195131181;PAX5:-1.61130630502;SOX{8,9,10}:-1.66094790475;HIC1:-1.68125378389;GFI1B:-1.72784093611;NKX2-3_NKX2-5:-1.85140101589;ZNF384:-1.85820400698;NR5A1,2:-1.85943501567;FOX{I1,J2}:-1.89332519421;HOX{A4,D4}:-1.90085006671;ARID5B:-1.9553570314;ONECUT1,2:-1.98231990822;NKX2-1,4:-1.99434837;T:-2.04701019195;CDC5L:-2.11331998422;TBX4,5:-2.15614518872;NFY{A,B,C}:-2.23019308241;SOX17:-2.24651435583;bHLH_family:-2.25212047782;GFI1:-2.28559443891;NRF1:-2.3106089165;LEF1_TCF7_TCF7L1,2:-2.32050845237;ZNF143:-2.63858109724;LHX3,4:-2.69517806006;PBX1:-2.87376277792 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11861-125A7;search_select_hide=table117:FF:11861-125A7 | |||
}} | }} |
Latest revision as of 18:24, 4 June 2020
Name: | CD14+ monocytes - treated with IFN + N-hexane, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13466 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13466
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13466
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.108 |
10 | 10 | 0.0282 |
100 | 100 | 0.817 |
101 | 101 | 0.795 |
102 | 102 | 0.532 |
103 | 103 | 0.145 |
104 | 104 | 0.625 |
105 | 105 | 0.521 |
106 | 106 | 6.10285e-4 |
107 | 107 | 0.177 |
108 | 108 | 0.793 |
109 | 109 | 0.152 |
11 | 11 | 0.1 |
110 | 110 | 0.189 |
111 | 111 | 0.0316 |
112 | 112 | 0.263 |
113 | 113 | 0.652 |
114 | 114 | 0.00777 |
115 | 115 | 0.365 |
116 | 116 | 0.721 |
117 | 117 | 0.0568 |
118 | 118 | 0.215 |
119 | 119 | 0.153 |
12 | 12 | 0.471 |
120 | 120 | 0.332 |
121 | 121 | 0.696 |
122 | 122 | 0.582 |
123 | 123 | 0.184 |
124 | 124 | 0.923 |
125 | 125 | 0.37 |
126 | 126 | 0.394 |
127 | 127 | 0.273 |
128 | 128 | 0.0103 |
129 | 129 | 0.384 |
13 | 13 | 0.18 |
130 | 130 | 0.199 |
131 | 131 | 0.568 |
132 | 132 | 0.0825 |
133 | 133 | 0.936 |
134 | 134 | 0.606 |
135 | 135 | 0.346 |
136 | 136 | 0.87 |
137 | 137 | 0.0196 |
138 | 138 | 0.167 |
139 | 139 | 0.0561 |
14 | 14 | 0.381 |
140 | 140 | 0.253 |
141 | 141 | 0.304 |
142 | 142 | 0.274 |
143 | 143 | 0.0175 |
144 | 144 | 0.781 |
145 | 145 | 0.278 |
146 | 146 | 0.866 |
147 | 147 | 0.361 |
148 | 148 | 0.013 |
149 | 149 | 0.618 |
15 | 15 | 0.116 |
150 | 150 | 0.42 |
151 | 151 | 0.307 |
152 | 152 | 0.0816 |
153 | 153 | 0.565 |
154 | 154 | 0.487 |
155 | 155 | 0.481 |
156 | 156 | 0.647 |
157 | 157 | 0.945 |
158 | 158 | 0.172 |
159 | 159 | 0.421 |
16 | 16 | 0.236 |
160 | 160 | 0.368 |
161 | 161 | 0.485 |
162 | 162 | 0.428 |
163 | 163 | 0.148 |
164 | 164 | 0.168 |
165 | 165 | 0.0456 |
166 | 166 | 0.767 |
167 | 167 | 0.24 |
168 | 168 | 0.269 |
169 | 169 | 0.00888 |
17 | 17 | 0.166 |
18 | 18 | 0.145 |
19 | 19 | 0.256 |
2 | 2 | 0.97 |
20 | 20 | 0.433 |
21 | 21 | 0.35 |
22 | 22 | 0.23 |
23 | 23 | 0.0302 |
24 | 24 | 0.208 |
25 | 25 | 0.347 |
26 | 26 | 0.0384 |
27 | 27 | 0.706 |
28 | 28 | 0.511 |
29 | 29 | 0.242 |
3 | 3 | 0.0532 |
30 | 30 | 0.675 |
31 | 31 | 0.754 |
32 | 32 | 0.737 |
33 | 33 | 0.344 |
34 | 34 | 0.464 |
35 | 35 | 0.195 |
36 | 36 | 0.168 |
37 | 37 | 0.0818 |
38 | 38 | 0.448 |
39 | 39 | 0.738 |
4 | 4 | 0.965 |
40 | 40 | 0.308 |
41 | 41 | 0.0342 |
42 | 42 | 0.316 |
43 | 43 | 0.0404 |
44 | 44 | 0.563 |
45 | 45 | 0.724 |
46 | 46 | 0.12 |
47 | 47 | 0.365 |
48 | 48 | 0.357 |
49 | 49 | 0.125 |
5 | 5 | 0.221 |
50 | 50 | 0.878 |
51 | 51 | 0.296 |
52 | 52 | 0.198 |
53 | 53 | 0.45 |
54 | 54 | 0.253 |
55 | 55 | 0.229 |
56 | 56 | 0.645 |
57 | 57 | 0.781 |
58 | 58 | 0.0909 |
59 | 59 | 0.132 |
6 | 6 | 0.64 |
60 | 60 | 0.0203 |
61 | 61 | 0.71 |
62 | 62 | 0.0287 |
63 | 63 | 0.351 |
64 | 64 | 0.411 |
65 | 65 | 0.257 |
66 | 66 | 0.339 |
67 | 67 | 0.555 |
68 | 68 | 0.879 |
69 | 69 | 0.525 |
7 | 7 | 0.267 |
70 | 70 | 0.0142 |
71 | 71 | 0.0363 |
72 | 72 | 0.106 |
73 | 73 | 0.125 |
74 | 74 | 0.0486 |
75 | 75 | 0.0876 |
76 | 76 | 0.372 |
77 | 77 | 0.322 |
78 | 78 | 0.0698 |
79 | 79 | 0.0349 |
8 | 8 | 0.31 |
80 | 80 | 0.156 |
81 | 81 | 0.302 |
82 | 82 | 0.0512 |
83 | 83 | 0.218 |
84 | 84 | 0.353 |
85 | 85 | 0.0153 |
86 | 86 | 0.0741 |
87 | 87 | 0.347 |
88 | 88 | 0.516 |
89 | 89 | 0.207 |
9 | 9 | 0.248 |
90 | 90 | 0.0543 |
91 | 91 | 0.367 |
92 | 92 | 0.125 |
93 | 93 | 0.609 |
94 | 94 | 0.0437 |
95 | 95 | 0.329 |
96 | 96 | 0.387 |
97 | 97 | 0.856 |
98 | 98 | 0.0924 |
99 | 99 | 0.213 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13466
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011443 CD14-positive monocytes - treated with IFN + N-hexane sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000629 (IFN and N-hexane treatment sample)
0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)