FF:11864-125B1: Difference between revisions

Latest revision as of 18:24, 4 June 2020

Name:	CD14+ monocytes - treated with Group A streptococci, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13469
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	69
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-5
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005955

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13469		CAGE		DRX008147		DRR009019

Accession ID Hg19

Library id		BAM		CTSS
CNhs13469		DRZ000444		DRZ001829

Accession ID Hg38

Library id		BAM		CTSS
CNhs13469		DRZ011794		DRZ013179

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	1.101
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	7.565692e-4
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.834
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.489
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.116
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.116
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.347
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.575
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.952
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.254
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.865
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.609
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.497
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.474
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.433
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.162
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.814
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.309
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.538
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.411
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.538
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.28
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.67
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.848
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.453
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.958
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.488
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.975
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	1.024
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.708
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.609
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.532
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.697
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.347
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.453
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.729
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	1.002
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.403
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.853
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.347
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.283
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.675
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0281
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.283
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.435
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.609
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.842
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.453
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.283
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.207
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.283
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.283
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13469

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.71172e-8
MA0003.1	MA0003.1	0.757
MA0004.1	MA0004.1	0.462
MA0006.1	MA0006.1	1
MA0007.1	MA0007.1	0.654
MA0009.1	MA0009.1	0.496
MA0014.1	MA0014.1	0.877
MA0017.1	MA0017.1	0.189
MA0018.2	MA0018.2	0.0772
MA0019.1	MA0019.1	0.525
MA0024.1	MA0024.1	0.00563
MA0025.1	MA0025.1	0.00446
MA0027.1	MA0027.1	0.849
MA0028.1	MA0028.1	0.105
MA0029.1	MA0029.1	0.129
MA0030.1	MA0030.1	0.117
MA0031.1	MA0031.1	0.251
MA0035.2	MA0035.2	0.247
MA0038.1	MA0038.1	0.427
MA0039.2	MA0039.2	0.549
MA0040.1	MA0040.1	0.636
MA0041.1	MA0041.1	0.931
MA0042.1	MA0042.1	0.607
MA0043.1	MA0043.1	1.59199e-7
MA0046.1	MA0046.1	0.00878
MA0047.2	MA0047.2	0.195
MA0048.1	MA0048.1	0.538
MA0050.1	MA0050.1	3.03224e-15
MA0051.1	MA0051.1	3.52811e-8
MA0052.1	MA0052.1	0.0542
MA0055.1	MA0055.1	0.431
MA0057.1	MA0057.1	0.442
MA0058.1	MA0058.1	0.279
MA0059.1	MA0059.1	0.203
MA0060.1	MA0060.1	3.12799e-10
MA0061.1	MA0061.1	8.18623e-14
MA0062.2	MA0062.2	0.959
MA0065.2	MA0065.2	0.0341
MA0066.1	MA0066.1	0.0222
MA0067.1	MA0067.1	3.4348e-5
MA0068.1	MA0068.1	0.621
MA0069.1	MA0069.1	0.834
MA0070.1	MA0070.1	0.0225
MA0071.1	MA0071.1	0.384
MA0072.1	MA0072.1	0.628
MA0073.1	MA0073.1	0.426
MA0074.1	MA0074.1	0.108
MA0076.1	MA0076.1	0.112
MA0077.1	MA0077.1	0.277
MA0078.1	MA0078.1	0.381
MA0079.2	MA0079.2	0.128
MA0080.2	MA0080.2	3.80264e-11
MA0081.1	MA0081.1	4.86425e-4
MA0083.1	MA0083.1	0.749
MA0084.1	MA0084.1	0.548
MA0087.1	MA0087.1	0.987
MA0088.1	MA0088.1	0.48
MA0090.1	MA0090.1	0.499
MA0091.1	MA0091.1	0.592
MA0092.1	MA0092.1	0.28
MA0093.1	MA0093.1	0.524
MA0099.2	MA0099.2	8.47942e-44
MA0100.1	MA0100.1	0.822
MA0101.1	MA0101.1	6.1752e-16
MA0102.2	MA0102.2	3.78027e-9
MA0103.1	MA0103.1	0.0682
MA0104.2	MA0104.2	0.563
MA0105.1	MA0105.1	4.08935e-18
MA0106.1	MA0106.1	0.815
MA0107.1	MA0107.1	8.63178e-20
MA0108.2	MA0108.2	0.279
MA0111.1	MA0111.1	0.397
MA0112.2	MA0112.2	2.2103e-4
MA0113.1	MA0113.1	0.819
MA0114.1	MA0114.1	0.24
MA0115.1	MA0115.1	0.795
MA0116.1	MA0116.1	2.21837e-4
MA0117.1	MA0117.1	0.0738
MA0119.1	MA0119.1	0.141
MA0122.1	MA0122.1	0.826
MA0124.1	MA0124.1	0.574
MA0125.1	MA0125.1	0.203
MA0131.1	MA0131.1	0.389
MA0135.1	MA0135.1	0.232
MA0136.1	MA0136.1	2.9648e-11
MA0137.2	MA0137.2	0.283
MA0138.2	MA0138.2	0.472
MA0139.1	MA0139.1	0.794
MA0140.1	MA0140.1	0.294
MA0141.1	MA0141.1	0.143
MA0142.1	MA0142.1	0.706
MA0143.1	MA0143.1	0.968
MA0144.1	MA0144.1	0.107
MA0145.1	MA0145.1	0.564
MA0146.1	MA0146.1	0.481
MA0147.1	MA0147.1	0.615
MA0148.1	MA0148.1	0.541
MA0149.1	MA0149.1	0.224
MA0150.1	MA0150.1	7.36638e-19
MA0152.1	MA0152.1	0.698
MA0153.1	MA0153.1	0.00101
MA0154.1	MA0154.1	3.36551e-4
MA0155.1	MA0155.1	0.937
MA0156.1	MA0156.1	1.67345e-7
MA0157.1	MA0157.1	0.738
MA0159.1	MA0159.1	0.0335
MA0160.1	MA0160.1	0.0963
MA0162.1	MA0162.1	0.712
MA0163.1	MA0163.1	2.94002e-8
MA0164.1	MA0164.1	0.641
MA0258.1	MA0258.1	0.0138
MA0259.1	MA0259.1	0.722

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13469

Novel motif	Logo	P-value
1	1	0.094
10	10	0.0233
100	100	0.988
101	101	0.793
102	102	0.914
103	103	0.253
104	104	0.523
105	105	0.128
106	106	9.54512e-4
107	107	0.178
108	108	0.678
109	109	0.332
11	11	0.127
110	110	0.181
111	111	0.0625
112	112	0.296
113	113	0.473
114	114	0.0208
115	115	0.28
116	116	0.86
117	117	0.0709
118	118	0.176
119	119	0.143
12	12	0.356
120	120	0.77
121	121	0.618
122	122	0.709
123	123	0.304
124	124	0.503
125	125	0.199
126	126	0.255
127	127	0.513
128	128	0.0463
129	129	0.329
13	13	0.098
130	130	0.258
131	131	0.902
132	132	0.0933
133	133	0.496
134	134	0.436
135	135	0.928
136	136	0.879
137	137	0.0512
138	138	0.349
139	139	0.0611
14	14	0.534
140	140	0.49
141	141	0.277
142	142	0.031
143	143	0.0179
144	144	0.508
145	145	0.256
146	146	0.827
147	147	0.894
148	148	0.0138
149	149	0.858
15	15	0.146
150	150	0.375
151	151	0.397
152	152	0.327
153	153	0.549
154	154	0.694
155	155	0.889
156	156	0.947
157	157	0.521
158	158	0.0697
159	159	0.16
16	16	0.318
160	160	0.35
161	161	0.428
162	162	0.275
163	163	0.0981
164	164	0.0918
165	165	0.292
166	166	0.778
167	167	0.25
168	168	0.174
169	169	0.0125
17	17	0.22
18	18	0.0818
19	19	0.448
2	2	0.53
20	20	0.167
21	21	0.756
22	22	0.334
23	23	0.0322
24	24	0.482
25	25	0.531
26	26	0.0465
27	27	0.521
28	28	0.41
29	29	0.244
3	3	0.111
30	30	0.407
31	31	0.756
32	32	0.642
33	33	0.251
34	34	0.776
35	35	0.108
36	36	0.0526
37	37	0.0786
38	38	0.362
39	39	0.745
4	4	0.833
40	40	0.18
41	41	0.0252
42	42	0.332
43	43	0.0208
44	44	0.634
45	45	0.836
46	46	0.17
47	47	0.478
48	48	0.451
49	49	0.116
5	5	0.311
50	50	0.988
51	51	0.473
52	52	0.399
53	53	0.614
54	54	0.421
55	55	0.462
56	56	0.631
57	57	0.831
58	58	0.168
59	59	0.217
6	6	0.818
60	60	0.051
61	61	0.722
62	62	0.083
63	63	0.469
64	64	0.445
65	65	0.201
66	66	0.196
67	67	0.469
68	68	0.808
69	69	0.358
7	7	0.266
70	70	0.0523
71	71	0.0235
72	72	0.142
73	73	0.214
74	74	0.0318
75	75	0.129
76	76	0.148
77	77	0.502
78	78	0.0938
79	79	0.86
8	8	0.319
80	80	0.225
81	81	0.313
82	82	0.129
83	83	0.0306
84	84	0.0904
85	85	0.029
86	86	0.0825
87	87	0.537
88	88	0.803
89	89	0.213
9	9	0.323
90	90	0.102
91	91	0.392
92	92	0.278
93	93	0.527
94	94	0.0858
95	95	0.39
96	96	0.352
97	97	0.552
98	98	0.0996
99	99	0.0894

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13469

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011106 human CD14-positive monocytes - treated with Group A streptococci sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0011106 (human CD14-positive monocytes - treated with Group A streptococci sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005955
-|accession_numbers=CAGE;DRX008147;DRR009019;DRZ000444;DRZ001829
+|accession_numbers=CAGE;DRX008147;DRR009019;DRZ000444;DRZ001829;DRZ011794;DRZ013179
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.42!2604.47!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.85!700.63!SPI1;;chr12:72056800..72056834,+!p1@THAP2!2.57!489.43!THAP2;;chr7:115670804..115670825,-!p1@TFEC!2.56!366.08!TFEC;;chr2:70142232..70142251,+!p1@MXD1!2.53!1802.22!MXD1;;chr12:54778471..54778528,-!p1@ZNF385A!2.46!284.35!ZNF385A;;chr3:101546827..101546847,+!p2@NFKBIZ!2.35!311.29!NFKBIZ;;chr14:35872453..35872485,-!p2@NFKBIA!2.33!506.87!NFKBIA;;chr9:102584159..102584174,+!p2@NR4A3!2.31!357.20!NR4A3;;chr9:102584262..102584276,+!p1@NR4A3!2.29!414.44!NR4A3;;chr10:35484053..35484076,+!p1@CREM!2.27!444.13!CREM;;chr11:47400062..47400077,-!p2@SPI1!2.18!149.68!SPI1;;chr11:47399947..47399961,-!p3@SPI1!2.17!148.14!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.17!148.14!IRF8;;chr14:35873947..35873965,-!p1@NFKBIA!2.14!7966.75!NFKBIA;;chr3:101568349..101568365,+!p1@NFKBIZ!2.14!6627.02!NFKBIZ;;chr20:39317868..39317884,-!p1@MAFB!2.13!1497.67!MAFB;;chr19:45971246..45971265,+!p1@FOSB!2.09!2107.39!FOSB;;chr12:72056749..72056767,+!p6@THAP2!2.01!110.80!THAP2;;chr2:157189180..157189290,-!p1@NR4A2!1.98!469.84!NR4A2;;chr12:72056773..72056796,+!p3@THAP2!1.97!119.68!THAP2;;chr10:64018918..64018936,+!p2@ZNF365!1.96!89.38!ZNF365;;chr10:64576105..64576133,-!p1@EGR2!1.95!174.47!EGR2;;chr12:52445218..52445237,+!p1@NR4A1!1.93!988.65!NR4A1;;chr4:103422499..103422632,+!p1@NFKB1!1.91!1581.84!NFKB1;;chr11:47399996..47400014,-!p4@SPI1!1.90!78.66!SPI1;;chr9:102584128..102584144,+!p3@NR4A3!1.88!140.19!NR4A3;;chr19:36391434..36391450,-!p1@NFKBID!1.87!138.96!NFKBID;;chr2:192015701..192015743,-!p1@STAT4!1.87!99.17!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.86!71.32!SPI1;;chr2:70167296..70167306,+!p3@MXD1!1.85!104.68!MXD1;;chr4:83822199..83822239,+!p2@THAP9!1.85!82.34!THAP9;;chr8:22550982..22550999,-!p1@EGR3!1.84!184.87!EGR3;;chr9:102584241..102584261,+!p4@NR4A3!1.81!96.42!NR4A3;;chr16:31885093..31885165,+!p1@ZNF267!1.80!883.66!ZNF267;;chr19:50432132..50432217,+!p2@ATF5!1.79!71.93!ATF5;;chrX:153305787..153305807,-!p3@MECP2!1.79!60.91!MECP2;;chr10:104155480..104155534,+!p2@NFKB2!1.77!354.45!NFKB2;;chr2:145275162..145275202,-!p2@ZEB2!1.76!319.86!ZEB2;;chr1:25256756..25256774,-!p1@RUNX3!1.76!103.76!RUNX3;;chr10:51572408..51572454,+!p3@NCOA4!1.75!309.45!NCOA4;;chr6:106534192..106534224,+!p1@PRDM1!1.74!146.92!PRDM1;;chr14:35872494..35872511,-!p5@NFKBIA!1.74!70.09!NFKBIA;;chr2:145277640..145277771,-!p1@ZEB2!1.73!665.43!ZEB2;;chr10:31288398..31288455,-!p2@ZNF438!1.72!60.30!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.72!51.12!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.71!1283.72!ATF3;;chr22:38597987..38598021,+!p2@MAFF!1.71!289.86!MAFF;;chr1:37940170..37940190,+!p1@ZC3H12A!1.70!565.95!ZC3H12A;;chr11:615942..615957,-!p1@IRF7!1.70!443.82!IRF7;;chr6:126240442..126240459,+!p4@NCOA7!1.70!62.44!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!1.69!119.07!NCOA7;;chr14:35872926..35872951,-!p4@NFKBIA!1.69!67.34!NFKBIA;;chr2:61108695..61108753,+!p1@REL!1.68!303.94!REL;;chr8:123793988..123794016,+!p1@ZHX2!1.68!81.42!ZHX2;;chr10:104155659..104155676,+!p4@NFKB2!1.68!58.16!NFKB2;;chr21:34442439..34442455,+!p1@OLIG1!1.67!45.91!OLIG1;;chr10:51572339..51572376,+!p4@NCOA4!1.65!95.19!NCOA4;;chr2:70165961..70165981,+!p8@MXD1!1.65!43.77!MXD1;;chr12:54778351..54778378,-!p6@ZNF385A!1.64!42.85!ZNF385A;;chr14:35872414..35872425,-!p7@NFKBIA!1.63!46.52!NFKBIA;;chr10:31288370..31288393,-!p3@ZNF438!1.63!41.93!ZNF438;;chr10:35484090..35484104,+!p6@CREM!1.63!41.32!CREM;;chr20:48599506..48599526,+!p1@SNAI1!1.62!252.21!SNAI1;;chr7:106809470..106809481,+!p2@HBP1!1.62!56.63!HBP1;;chr3:39195037..39195069,-!p2@CSRNP1!1.61!238.44!CSRNP1;;chr14:35872542..35872553,-!p10@NFKBIA!1.61!39.48!NFKBIA;;chr10:104154246..104154347,+!p3@NFKB2!1.60!227.73!NFKB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.60!95.80!NFKBIA;;chr4:106066712..106066728,+!p8@TET2!1.60!38.87!TET2;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.91!PLAGL1;;chr9:102584278..102584285,+!p5@NR4A3!1.58!37.34!NR4A3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!37.04!ZBED1;;chr21:36260295..36260310,-!p3@RUNX1!1.57!57.54!RUNX1;;chr6:126240463..126240489,+!p6@NCOA7!1.57!40.10!NCOA7;;chr4:106066776..106066791,+!p9@TET2!1.57!35.81!TET2;;chr6:12012170..12012245,+!p1@HIVEP1!1.56!169.57!HIVEP1;;chr2:145271342..145271377,-!p5@ZEB2!1.56!35.51!ZEB2;;chrX:129244454..129244488,-!p1@ELF4!1.55!237.22!ELF4;;chr2:97202480..97202499,+!p1@ARID5A!1.54!322.61!ARID5A;;chr9:129567282..129567353,+!p1@ZBTB43!1.52!402.50!ZBTB43;;chr6:44233252..44233296,-!p1@NFKBIE!1.52!303.02!NFKBIE;;chr18:3449330..3449344,+!p10@TGIF1!1.52!41.93!TGIF1;;chr19:54058073..54058088,+!p1@ZNF331!1.52!31.83!ZNF331;;chr19:45252008..45252024,+!p2@BCL3!1.50!97.33!BCL3;;chr2:70314240..70314256,+!p4@PCBP1!1.50!61.83!PCBP1;;chr2:70166156..70166179,+!p4@MXD1!1.50!30.30!MXD1;;chr13:41593425..41593480,-!p1@ELF1!1.49!184.26!ELF1;;chr5:137804484..137804498,+!p2@EGR1!1.49!115.70!EGR1;;chr19:47616992..47617011,-!p4@ZC3H4!1.49!62.14!ZC3H4;;chr11:47399920..47399931,-!p7@SPI1!1.49!30.00!SPI1;;chr3:150126101..150126118,+!p6@TSC22D2!1.48!46.52!TSC22D2;;chr21:40177845..40177863,+!p1@ETS2!1.47!1590.11!ETS2;;chr4:106068026..106068084,+!p1@TET2!1.47!245.79!TET2;;chrX:153305962..153305995,-!p5@MECP2!1.47!28.77!MECP2;;chr1:38325227..38325246,-!p2@MTF1!1.46!37.95!MTF1;;chr4:103423079..103423112,+!p4@NFKB1!1.46!28.16!NFKB1;;chr11:47400045..47400060,-!p6@SPI1!1.46!28.16!SPI1;;chr2:191885737..191885750,-!p4@STAT1!1.46!27.85!STAT1;;chr6:15246200..15246214,+!p2@JARID2!1.45!74.07!JARID2;;chr21:30673091..30673135,+!p7@BACH1!1.45!27.24!BACH1;;chr10:35416142..35416169,+!p3@CREM!1.44!68.56!CREM;;chr11:65430554..65430579,-!p3@RELA!1.44!65.81!RELA;;chr1:221052776..221052799,+!p1@HLX!1.44!47.44!HLX;;chr4:106066730..106066754,+!p6@TET2!1.44!26.63!TET2;;chr2:231090471..231090504,+!p2@SP140!1.44!26.32!SP140;;chr2:70166258..70166288,+!p5@MXD1!1.44!26.32!MXD1;;chr7:50344289..50344323,+!p1@IKZF1!1.44!26.32!IKZF1;;chr6:12011943..12012015,+!p2@HIVEP1!1.43!80.81!HIVEP1;;chr6:391743..391759,+!p1@IRF4!1.43!25.71!IRF4;;chr2:68615063..68615089,+!p4@PLEK!1.42!25.40!PLEK;;chr10:3827371..3827386,-!p2@KLF6!1.41!199.26!KLF6;;chr2:70166988..70167021,+!p7@MXD1!1.41!24.79!MXD1;;chr21:30671690..30671762,+!p2@BACH1!1.40!79.28!BACH1;;chr2:28618532..28618610,+!p4@FOSL2!1.40!40.40!FOSL2;;chr3:101575889..101575903,+!p3@NFKBIZ!1.39!23.57!NFKBIZ;;chr4:83822246..83822277,+!p5@THAP9!1.39!23.57!THAP9;;chr6:106534230..106534254,+!p2@PRDM1!1.38!56.32!PRDM1;;chr18:3448455..3448480,+!p5@TGIF1!1.38!41.63!TGIF1;;chr2:231090433..231090469,+!p1@SP140!1.38!23.26!SP140;;chr21:30671235..30671253,+!p1@BACH1!1.37!275.78!BACH1;;chr18:77155922..77155939,+!p1@NFATC1!1.37!60.91!NFATC1;;chr18:3449720..3449749,+!p2@TGIF1!1.37!46.52!TGIF1;;chr2:145277882..145277967,-!p3@ZEB2!1.37!37.95!ZEB2;;chr9:94173455..94173468,-!p4@NFIL3!1.37!22.34!NFIL3;;chr10:104155455..104155479,+!p1@NFKB2!1.36!308.53!NFKB2;;chr12:48298765..48298783,-!p2@VDR!1.36!45.30!VDR;;chr4:83821967..83821998,+!p3@THAP9!1.35!26.32!THAP9;;chr2:73520667..73520683,-!p1@EGR4!1.35!21.43!EGR4;;chr21:30672433..30672464,+!p6@BACH1!1.35!21.43!BACH1;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.70!ETV6;;chr21:40177892..40177903,+!p2@ETS2!1.34!81.11!ETS2;;chr10:35484804..35484902,+!p2@CREM!1.34!77.44!CREM;;chr12:96588368..96588394,+!p3@ELK3!1.34!54.79!ELK3;;chr6:12012249..12012266,+!p5@HIVEP1!1.34!36.12!HIVEP1;;chr2:231084639..231084654,-!p2@SP110!1.34!34.59!SP110;;chr12:72056897..72056908,+!p12@THAP2!1.34!21.12!THAP2;;chr2:28615716..28615733,+!p1@FOSL2!1.33!928.35!FOSL2;;chr2:70142189..70142223,+!p2@MXD1!1.32!139.57!MXD1;;chr2:192015677..192015691,-!p3@STAT4!1.32!19.90!STAT4;;chr12:72056706..72056717,+!p10@THAP2!1.32!19.90!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.31!22.34!RARA;;chr4:83822294..83822306,+!p8@THAP9!1.31!19.28!THAP9;;chr3:170075436..170075520,+!p1@SKIL!1.30!399.75!SKIL;;chr7:128577972..128578047,+!p1@IRF5!1.30!29.38!IRF5;;chr19:54041669..54041697,+!p2@ZNF331!1.30!18.98!ZNF331;;chr7:115670792..115670797,-!p2@TFEC!1.29!18.67!TFEC;;chrX:129244430..129244442,-!p5@ELF4!1.29!18.67!ELF4;;chrX:153305741..153305753,-!p4@MECP2!1.29!18.37!MECP2;;chr14:75745523..75745537,+!p1@FOS!1.28!2090.55!FOS;;chr11:615570..615721,-!p2@IRF7!1.28!35.20!IRF7;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.06!LRRFIP1;;chr18:3449618..3449634,+!p13@TGIF1!1.26!21.12!TGIF1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.25!88.46!LRRFIP1;;chr19:45250948..45250998,+!p3@BCL3!1.25!41.63!BCL3;;chr18:3449586..3449617,+!p8@TGIF1!1.25!26.63!TGIF1;;chr3:39195139..39195150,-!p3@CSRNP1!1.25!21.43!CSRNP1;;chr12:96588219..96588263,+!p2@ELK3!1.24!115.70!ELK3;;chr4:81104895..81104920,+!p2@PRDM8!1.24!24.49!PRDM8;;chr3:39195075..39195088,-!p1@CSRNP1!1.23!98.56!CSRNP1;;chr5:142782823..142782854,-!p3@NR3C1!1.23!22.96!NR3C1;;chr9:110252035..110252057,-!p1@KLF4!1.22!242.11!KLF4;;chr7:17338266..17338282,+!p1@AHR!1.22!165.29!AHR;;chr2:157199008..157199023,-!p3@NR4A2!1.22!32.44!NR4A2;;chr10:3827389..3827408,-!p1@KLF6!1.21!1148.12!KLF6;;chr1:158979872..158979898,+!p3@IFI16!1.21!46.22!IFI16;;chr9:3525727..3525828,-!p2@RFX3!1.21!38.26!RFX3;;chr19:19496539..19496576,+!p8@GATAD2A!1.21!26.63!GATAD2A;;chr2:61108808..61108821,+!p3@REL!1.21!19.28!REL;;chr20:48807351..48807384,+!p1@CEBPB!1.20!1481.14!CEBPB;;chr1:157108130..157108173,-!p1@ETV3!1.20!105.29!ETV3;;chr2:208394817..208394834,+!p3@CREB1!1.20!59.69!CREB1;;chr1:161736038..161736056,+!p4@ATF6!1.20!34.59!ATF6;;chr8:116681123..116681143,-!p4@TRPS1!1.20!28.77!TRPS1;;chr18:3449527..3449582,+!p6@TGIF1!1.20!28.47!TGIF1;;chr17:40440225..40440268,+!p3@STAT5A!1.20!18.98!STAT5A;;chr11:65430535..65430549,-!p4@RELA!1.20!17.45!RELA;;chr17:38497715..38497734,+!p8@RARA!1.20!15.00!RARA;;chr8:53373491..53373506,-!p4@ST18!1.20!15.00!ST18;;chr12:72056684..72056693,+!p13@THAP2!1.20!14.69!THAP2;;chr2:70166499..70166536,+!p6@MXD1!1.20!14.69!MXD1;;chr19:12902289..12902307,+!p1@JUNB!1.19!3252.14!JUNB;;chr9:117150254..117150271,-!p1@AKNA!1.19!39.79!AKNA;;chr8:72755203..72755239,-!p10@MSC!1.18!14.08!MSC;;chr2:145277589..145277612,-!p12@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A!0.99!30.30!RARA;;chr4:103446567..103446592,+!p15@NFKB1!0.99!8.88!NFKB1;;chr19:45251943..45252006,+!p1@BCL3!0.98!229.26!BCL3;;chr10:114709999..114710031,+!p1@TCF7L2!0.98!206.61!TCF7L2;;chr12:52448151..52448200,+!p8@NR4A1!0.98!8.57!NR4A1;;chr12:72056858..72056869,+!p14@THAP2!0.98!8.57!THAP2;;chr8:65492433..65492440,+!p6@BHLHE22!0.98!8.57!BHLHE22;;chr2:157189617..157189667,-!p4@NR4A2!0.98!8.57!NR4A2;;chr2:185462614..185462619,+!p5@ZNF804A!0.98!8.57!ZNF804A;;chr12:11802600..11802685,+!p1@ETV6!0.97!130.70!ETV6;;chr18:3449821..3449860,+!p7@TGIF1!0.97!15.30!TGIF1;;chr12:54785074..54785122,-!p2@ZNF385A!0.97!12.86!ZNF385A;;chr12:52448293..52448318,+!p10@NR4A1!0.97!8.26!NR4A1;;chr2:70166212..70166223,+!p16@MXD1!0.97!8.26!MXD1;;chr4:83822343..83822355,+!p9@THAP9!0.97!8.26!THAP9;;chr1:151030388..151030419,+!p9@MLLT11!0.97!8.26!MLLT11;;chr5:71803177..71803255,-!p1@ZNF366!0.97!8.26!ZNF366;;chr19:6110474..6110551,-!p1@RFX2!0.96!51.42!RFX2;;chr19:45254529..45254561,+!p10@BCL3!0.96!11.02!BCL3;;chr1:221052840..221052875,+!p4@HLX!0.96!9.79!HLX;;chr2:238600789..238600925,+!p1@LRRFIP1!0.95!164.06!LRRFIP1;;chr9:88969339..88969422,-!p2@ZCCHC6!0.95!63.05!ZCCHC6;;chr4:103422811..103422822,+!p11@NFKB1!0.95!7.96!NFKB1;;chr9:94186101..94186122,-!p1@NFIL3!0.94!110.50!NFIL3;;chr16:69599899..69599919,+!p2@NFAT5!0.94!89.99!NFAT5;;chr14:64970670..64970712,-!p3@ZBTB25!0.94!17.14!ZBTB25;;chr6:15246217..15246228,+!p3@JARID2!0.94!14.08!JARID2;;chr12:11802690..11802704,+!p4@ETV6!0.94!11.33!ETV6;;chr10:35416125..35416138,+!p10@CREM!0.94!9.18!CREM;;chr9:110250697..110250738,-!p2@KLF4!0.94!9.18!KLF4;;chr17:46620898..46620927,-!p9@HOXB2!0.94!9.18!HOXB2;;chr6:126240542..126240553,+!p14@NCOA7!0.94!7.65!NCOA7;;chr8:116681194..116681214,-!p1@TRPS1!0.93!71.93!TRPS1;;chr12:124873852..124873881,-!p3@NCOR2!0.93!47.44!NCOR2;;chr5:88179195..88179224,-!p3@MEF2C!0.93!12.24!MEF2C;;chr14:24630902..24630948,+!p2@IRF9!0.93!9.18!IRF9;;chr1:158979792..158979814,+!p2@IFI16!0.92!72.85!IFI16;;chr8:116681022..116681042,-!p10@TRPS1!0.92!9.79!TRPS1;;chr12:54694758..54694805,-!p1@NFE2!0.92!8.88!NFE2;;chr7:106810409..106810420,+!p6@HBP1!0.92!7.35!HBP1;;chr1:16279391..16279405,-!p3@ZBTB17!0.92!7.35!ZBTB17;;chr21:34398234..34398250,+!p1@OLIG2!0.92!7.35!OLIG2;;chr18:53178179..53178191,-!p53@TCF4!0.92!7.35!TCF4;;chr14:24630465..24630531,+!p1@IRF9!0.91!285.88!IRF9;;chr17:79885576..79885624,-!p1@MAFG!0.91!84.17!MAFG;;chr6:143266297..143266356,-!p1@HIVEP2!0.91!35.81!HIVEP2;;chr7:149470641..149470694,-!p1@ZNF467!0.91!33.67!ZNF467;;chr19:42636586..42636607,-!p1@POU2F2!0.91!20.20!POU2F2;;chr7:99156393..99156433,+!p6@ZNF655!0.91!16.53!ZNF655;;chr13:41635029..41635044,-!p4@ELF1!0.91!15.61!ELF1;;chr12:72058102..72058127,+!p7@THAP2!0.91!13.16!THAP2;;chr17:7388010..7388017,-!p5@ZBTB4!0.91!12.24!ZBTB4;;chr14:64971014..64971044,+!p4@ZBTB1!0.91!11.94!ZBTB1;;chr14:75746722..75746777,+!p2@FOS!0.91!9.18!FOS;;chr17:40440359..40440386,+!p4@STAT5A!0.91!7.04!STAT5A;;chr7:106810363..106810374,+!p9@HBP1!0.91!7.04!HBP1;;chr21:40181951..40181963,+!p6@ETS2!0.91!7.04!ETS2;;chr3:12392991..12393030,+!p7@PPARG!0.91!7.04!PPARG;;chr4:140098339..140098392,-!p1@ELF2!0.90!60.60!ELF2;;chr8:123793959..123793977,+!p4@ZHX2!0.90!13.77!ZHX2;;chr3:170075124..170075136,+!p4@SKIL!0.90!9.79!SKIL;;chr7:28725740..28725778,+!p1@CREB5!0.89!63.67!CREB5;;chr6:20403916..20403965,+!p3@E2F3!0.89!31.83!E2F3;;chr7:28448965..28448994,+!p2@CREB5!0.89!24.79!CREB5;;chr6:12012536..12012554,+!p4@HIVEP1!0.89!16.83!HIVEP1;;chr15:90544532..90544563,+!p1@ZNF710!0.89!14.08!ZNF710;;chr18:3448422..3448439,+!p11@TGIF1!0.89!10.10!TGIF1;;chr4:106156933..106156947,+!p3@TET2!0.89!9.18!TET2;;chr9:88969287..88969297,-!p3@ZCCHC6!0.89!9.18!ZCCHC6;;chr8:81397846..81397860,+!p3@ZBTB10!0.89!8.57!ZBTB10;;chr4:81104865..81104886,+!p6@PRDM8!0.89!7.35!PRDM8;;chrX:153305877..153305884,-!p10@MECP2!0.89!6.73!MECP2;;chr10:135044190..135044229,+!p3@UTF1!0.89!6.73!UTF1;;chr12:52448515..52448538,+!p9@NR4A1!0.89!6.73!NR4A1;;chr19:45977993..45978005,+!p6@FOSB!0.89!6.73!FOSB;;chr21:36260325..36260341,-!p14@RUNX1!0.89!6.73!RUNX1;;chr22:38598042..38598052,+!p4@MAFF!0.88!10.71!MAFF;;chr3:18486354..18486377,-!p2@SATB1!0.88!8.26!SATB1;;chr11:65667846..65667868,-!p1@FOSL1!0.87!181.20!FOSL1;;chr2:231084659..231084721,-!p1@SP110!0.87!159.16!SP110;;chr19:47617013..47617069,-!p2@ZC3H4!0.87!41.02!ZC3H4;;chr20:48809000..48809053,+!p12@CEBPB!0.87!8.57!CEBPB;;chr4:81104958..81104981,+!p5@PRDM8!0.87!7.65!PRDM8;;chr7:106826626..106826630,+!p3@HBP1!0.87!7.65!HBP1;;chr10:3824229..3824253,-!p7@KLF6!0.87!7.35!KLF6;;chr10:51575814..51575835,+!p8@NCOA4!0.87!6.43!NCOA4;;chr12:57914700..57914737,+!p7@MBD6!0.87!6.43!MBD6;;chr6:126240490..126240501,+!p11@NCOA7!0.87!6.43!NCOA7;;chr19:45977697..45977713,+!p4@FOSB!0.87!6.43!FOSB;;chr1:221054853..221054873,+!p9@HLX!0.87!6.43!HLX;;chr14:75747296..75747329,+!p4@FOS!0.87!6.43!FOS;;chr15:90545434..90545449,+!p9@ZNF710!0.87!6.43!ZNF710;;chr2:178129414..178129517,-!p1@NFE2L2!0.86!262.01!NFE2L2;;chr17:38498402..38498445,+!p3@RARA!0.86!23.87!RARA;;chr9:941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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0011106,FF:11864-125B1
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor1.CNhs13469.11864-125B1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11864-125B1
 |is_a=EFO:0002091;;FF:0011106
 |is_obsolete=
 |library_id=CNhs13469
-|library_id_phase_based=1:CNhs13469
+|library_id_phase_based=2:CNhs13469
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11864
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11864
 |name=CD14+ monocytes - treated with Group A streptococci, donor1
 |namespace=
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13469,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11864-125B1;search_select_hide=table117:FF:11864-125B1
 }}

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FF:11864-125B1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:24, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0