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(Created page with "{{f5samples |id=FF:11875-125C3 |name=CD14+ monocytes - treated with lipopolysaccharide, donor2 |sample_id=11875 |rna_tube_id= |rna_box=125 |rna_position=C3 |sample_cell...")
 
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{{f5samples
{{f5samples
|id=FF:11875-125C3
|DRA_sample_Accession=CAGE@SAMD00006012
|name=CD14+ monocytes - treated with lipopolysaccharide, donor2
|accession_numbers=CAGE;DRX008160;DRR009032;DRZ000457;DRZ001842;DRZ011807;DRZ013192
|sample_id=11875
|ancestors_in_anatomy_facet=
|rna_tube_id=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|rna_box=125
|rna_position=C3
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=D4-6
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=donor2
|sample_sex=male
|sample_age=51
|sample_ethnicity=
|rna_rin=8.80000
|rna_od260/230=1.15000
|rna_od260/280=1.91000
|sample_cell_type=monocyte
|sample_cell_line=
|sample_collaboration=Christine Wells (University of Queensland)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=1.95381
|rna_concentration=0.43418
|sample_note=
|profile_hcage=CNhs13533,,,LIBRARY SCHEDULED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002057,CL:0002087,CL:0002194,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000335,FF:0011108
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.78!6013.97!PLEK;;chr7:115670804..115670825,-!p1@TFEC!3.05!1121.41!TFEC;;chr11:47400078..47400106,-!p1@SPI1!2.86!719.61!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.85!703.78!IRF8;;chr3:101546827..101546847,+!p2@NFKBIZ!2.38!331.08!NFKBIZ;;chr10:64018918..64018936,+!p2@ZNF365!2.32!208.45!ZNF365;;chr2:192015701..192015743,-!p1@STAT4!2.20!214.71!STAT4;;chr12:54778471..54778528,-!p1@ZNF385A!2.16!145.10!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!2.16!143.26!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.13!1485.26!MAFB;;chr12:72056800..72056834,+!p1@THAP2!2.12!174.56!THAP2;;chr2:68592394..68592405,+!p2@PLEK!2.11!128.53!PLEK;;chr10:51572408..51572454,+!p3@NCOA4!2.10!693.10!NCOA4;;chr21:34442439..34442455,+!p1@OLIG1!2.07!117.85!OLIG1;;chr14:35872453..35872485,-!p2@NFKBIA!2.06!271.05!NFKBIA;;chr11:47399947..47399961,-!p3@SPI1!2.04!108.27!SPI1;;chr10:31288398..31288455,-!p2@ZNF438!2.03!123.00!ZNF438;;chr14:35873947..35873965,-!p1@NFKBIA!2.01!5898.33!NFKBIA;;chr6:106534192..106534224,+!p1@PRDM1!2.00!265.16!PRDM1;;chr2:61108695..61108753,+!p1@REL!1.99!623.86!REL;;chr12:72056749..72056767,+!p6@THAP2!1.99!107.54!THAP2;;chrX:153305787..153305807,-!p3@MECP2!1.99!97.23!MECP2;;chr10:104155659..104155676,+!p4@NFKB2!1.96!110.85!NFKB2;;chr10:64576105..64576133,-!p1@EGR2!1.94!173.09!EGR2;;chr16:31885093..31885165,+!p1@ZNF267!1.93!1199.85!ZNF267;;chr2:145275162..145275202,-!p2@ZEB2!1.91!447.83!ZEB2;;chr2:70142232..70142251,+!p1@MXD1!1.91!428.68!MXD1;;chr4:103422499..103422632,+!p1@NFKB1!1.89!1493.00!NFKB1;;chr21:30671690..30671762,+!p2@BACH1!1.88!244.90!BACH1;;chr5:142782823..142782854,-!p3@NR3C1!1.87!102.01!NR3C1;;chr1:38325227..38325246,-!p2@MTF1!1.87!98.70!MTF1;;chr12:72056773..72056796,+!p3@THAP2!1.87!93.54!THAP2;;chr11:47400032..47400043,-!p5@SPI1!1.86!72.18!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.83!844.46!ZEB2;;chr10:104155480..104155534,+!p2@NFKB2!1.83!408.79!NFKB2;;chr10:35484053..35484076,+!p1@CREM!1.83!161.67!CREM;;chr10:31288370..31288393,-!p3@ZNF438!1.83!66.29!ZNF438;;chr9:102584262..102584276,+!p1@NR4A3!1.82!142.16!NR4A3;;chr3:101568349..101568365,+!p1@NFKBIZ!1.80!3036.45!NFKBIZ;;chr2:68615063..68615089,+!p4@PLEK!1.76!56.35!PLEK;;chr11:47399996..47400014,-!p4@SPI1!1.74!54.51!SPI1;;chr21:30673091..30673135,+!p7@BACH1!1.74!54.14!BACH1;;chr9:102584159..102584174,+!p2@NR4A3!1.73!93.54!NR4A3;;chr1:37940170..37940190,+!p1@ZC3H12A!1.72!597.35!ZC3H12A;;chr22:38597987..38598021,+!p2@MAFF!1.72!296.46!MAFF;;chr19:50432132..50432217,+!p2@ATF5!1.72!60.77!ATF5;;chr1:157108130..157108173,-!p1@ETV3!1.71!343.60!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.71!240.49!HIVEP1;;chr19:45971246..45971265,+!p1@FOSB!1.70!868.77!FOSB;;chr10:104154246..104154347,+!p3@NFKB2!1.70!286.15!NFKB2;;chr6:106534230..106534254,+!p2@PRDM1!1.70!118.22!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!1.70!106.80!NCOA4;;chr21:30671235..30671253,+!p1@BACH1!1.69!577.09!BACH1;;chr18:77155922..77155939,+!p1@NFATC1!1.69!127.06!NFATC1;;chr11:65430554..65430579,-!p3@RELA!1.69!119.69!RELA;;chr7:50344289..50344323,+!p1@IKZF1!1.66!44.56!IKZF1;;chr9:102584128..102584144,+!p3@NR4A3!1.65!81.76!NR4A3;;chr8:123793988..123794016,+!p1@ZHX2!1.65!75.87!ZHX2;;chr2:68615031..68615055,+!p3@PLEK!1.64!42.35!PLEK;;chr6:144385698..144385742,-!p2@PLAGL1!1.63!50.82!PLAGL1;;chr11:615942..615957,-!p1@IRF7!1.61!357.97!IRF7;;chr11:47400045..47400060,-!p6@SPI1!1.61!40.14!SPI1;;chr14:35872494..35872511,-!p5@NFKBIA!1.60!51.19!NFKBIA;;chr2:61108808..61108821,+!p3@REL!1.60!48.98!REL;;chr13:41593425..41593480,-!p1@ELF1!1.59!229.07!ELF1;;chr6:126240380..126240430,+!p2@NCOA7!1.58!92.81!NCOA7;;chr1:212782094..212782109,+!p1@ATF3!1.57!927.32!ATF3;;chr8:22550982..22550999,-!p1@EGR3!1.57!100.17!EGR3;;chr6:391743..391759,+!p1@IRF4!1.57!36.46!IRF4;;chr9:129567282..129567353,+!p1@ZBTB43!1.55!430.52!ZBTB43;;chr21:36260295..36260310,-!p3@RUNX1!1.55!54.87!RUNX1;;chrX:153305741..153305753,-!p4@MECP2!1.55!34.62!MECP2;;chr6:15246200..15246214,+!p2@JARID2!1.54!90.96!JARID2;;chr7:115670792..115670797,-!p2@TFEC!1.54!33.88!TFEC;;chr7:17338266..17338282,+!p1@AHR!1.53!339.18!AHR;;chr6:12011943..12012015,+!p2@HIVEP1!1.53!103.49!HIVEP1;;chr19:36391434..36391450,-!p1@NFKBID!1.52!61.50!NFKBID;;chr6:12012249..12012266,+!p5@HIVEP1!1.52!54.51!HIVEP1;;chr4:81104895..81104920,+!p2@PRDM8!1.52!47.88!PRDM8;;chr6:44233252..44233296,-!p1@NFKBIE!1.51!294.99!NFKBIE;;chr21:30672433..30672464,+!p6@BACH1!1.51!31.30!BACH1;;chr8:53373491..53373506,-!p4@ST18!1.50!30.94!ST18;;chr4:103423079..103423112,+!p4@NFKB1!1.50!30.94!NFKB1;;chr4:103446567..103446592,+!p15@NFKB1!1.50!30.94!NFKB1;;chr17:40440225..40440268,+!p3@STAT5A!1.48!37.20!STAT5A;;chr12:72056706..72056717,+!p10@THAP2!1.48!29.46!THAP2;;chr14:35872962..35873025,-!p3@NFKBIA!1.47!69.97!NFKBIA;;chr12:54778351..54778378,-!p6@ZNF385A!1.46!27.62!ZNF385A;;chrX:153305962..153305995,-!p5@MECP2!1.46!27.62!MECP2;;chr8:81397846..81397860,+!p3@ZBTB10!1.45!33.51!ZBTB10;;chr7:17338324..17338341,+!p3@AHR!1.44!86.18!AHR;;chr4:103446513..103446530,+!p19@NFKB1!1.44!26.52!NFKB1;;chr4:106068026..106068084,+!p1@TET2!1.43!222.07!TET2;;chr12:48298765..48298783,-!p2@VDR!1.43!53.40!VDR;;chr2:61108771..61108789,+!p4@REL!1.43!38.67!REL;;chr8:72755203..72755239,-!p10@MSC!1.42!25.41!MSC;;chr8:81397820..81397836,+!p2@ZBTB10!1.41!30.94!ZBTB10;;chr20:48807351..48807384,+!p1@CEBPB!1.40!2358.82!CEBPB;;chr21:40177845..40177863,+!p1@ETS2!1.40!1358.21!ETS2;;chrX:129244454..129244488,-!p1@ELF4!1.40!167.57!ELF4;;chr2:231090471..231090504,+!p2@SP140!1.40!24.31!SP140;;chr2:145277882..145277967,-!p3@ZEB2!1.39!40.14!ZEB2;;chr14:35872926..35872951,-!p4@NFKBIA!1.38!32.41!NFKBIA;;chr17:38497662..38497713,+!p4@RARA!1.38!26.52!RARA;;chr2:97202480..97202499,+!p1@ARID5A!1.37!220.97!ARID5A;;chr12:96588219..96588263,+!p2@ELK3!1.36!151.73!ELK3;;chr17:40440359..40440386,+!p4@STAT5A!1.36!22.10!STAT5A;;chr1:221052733..221052749,+!p2@HLX!1.35!27.62!HLX;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.36!SPI1;;chr2:68615096..68615115,+!p5@PLEK!1.34!20.99!PLEK;;chr6:143266297..143266356,-!p1@HIVEP2!1.33!96.12!HIVEP2;;chr2:185463247..185463263,+!p1@ZNF804A!1.33!36.09!ZNF804A;;chr3:170075436..170075520,+!p1@SKIL!1.32!412.47!SKIL;;chr12:11802753..11802834,+!p2@ETV6!1.32!96.12!ETV6;;chrX:24167086..24167111,+!p4@ZFX!1.32!19.89!ZFX;;chr19:45251395..45251432,+!p8@BCL3!1.32!19.89!BCL3;;chr5:88178983..88179012,-!p1@MEF2C!1.31!146.94!MEF2C;;chr20:48599506..48599526,+!p1@SNAI1!1.31!123.00!SNAI1;;chr19:45252008..45252024,+!p2@BCL3!1.31!63.34!BCL3;;chr2:231084639..231084654,-!p2@SP110!1.31!32.04!SP110;;chr16:69599899..69599919,+!p2@NFAT5!1.30!211.76!NFAT5;;chr1:120190786..120190915,-!p1@ZNF697!1.30!133.68!ZNF697;;chr2:238600998..238601013,+!p5@LRRFIP1!1.30!19.15!LRRFIP1;;chr19:19496539..19496576,+!p8@GATAD2A!1.29!32.41!GATAD2A;;chr12:96588279..96588299,+!p4@ELK3!1.28!84.34!ELK3;;chr7:106809470..106809481,+!p2@HBP1!1.28!25.04!HBP1;;chr5:131826457..131826514,-!p1@IRF1!1.27!676.16!IRF1;;chr9:110252035..110252057,-!p1@KLF4!1.27!275.47!KLF4;;chr2:157189180..157189290,-!p1@NR4A2!1.27!89.12!NR4A2;;chr3:37217736..37217753,-!p2@LRRFIP2!1.27!72.92!LRRFIP2;;chr10:35484090..35484104,+!p6@CREM!1.27!17.68!CREM;;chr6:106535598..106535637,+!p7@PRDM1!1.27!17.68!PRDM1;;chr1:38325256..38325280,-!p1@MTF1!1.26!104.96!MTF1;;chr2:28618532..28618610,+!p4@FOSL2!1.26!29.09!FOSL2;;chr18:3449586..3449617,+!p8@TGIF1!1.26!27.62!TGIF1;;chr12:52445218..52445237,+!p1@NR4A1!1.25!205.50!NR4A1;;chr3:12329397..12329433,+!p2@PPARG!1.25!37.56!PPARG;;chr8:72756063..72756125,-!p1@MSC!1.25!33.51!MSC;;chr1:221052776..221052799,+!p1@HLX!1.25!29.83!HLX;;chr9:102584241..102584261,+!p4@NR4A3!1.25!26.15!NR4A3;;chr21:40177892..40177903,+!p2@ETS2!1.24!65.19!ETS2;;chr12:96588368..96588394,+!p3@ELK3!1.24!43.83!ELK3;;chr4:83822199..83822239,+!p2@THAP9!1.24!19.52!THAP9;;chr8:72756637..72756664,-!p3@MSC!1.24!18.78!MSC;;chr2:231090433..231090469,+!p1@SP140!1.24!16.57!SP140;;chr10:31288329..31288353,-!p7@ZNF438!1.24!16.57!ZNF438;;chr19:50432104..50432126,+!p6@ATF5!1.24!16.20!ATF5;;chr2:208394817..208394834,+!p3@CREB1!1.23!63.34!CREB1;;chr6:35310395..35310410,+!p2@PPARD!1.23!61.50!PPARD;;chr2:145275228..145275241,-!p11@ZEB2!1.23!19.15!ZEB2;;chr11:65430535..65430549,-!p4@RELA!1.23!18.41!RELA;;chr8:72755345..72755349,-!p14@MSC!1.23!15.84!MSC;;chr10:3827371..3827386,-!p2@KLF6!1.22!129.27!KLF6;;chr14:64970670..64970712,-!p3@ZBTB25!1.22!33.14!ZBTB25;;chr21:30672734..30672748,+!p11@BACH1!1.22!15.47!BACH1;;chr6:15246261..15246312,+!p1@JARID2!1.21!364.59!JARID2;;chr22:38598086..38598105,+!p1@MAFF!1.21!161.31!MAFF;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.78!TGIF1;;chr11:34642612..34642646,+!p1@EHF!1.21!15.10!EHF;;chr2:73520667..73520683,-!p1@EGR4!1.21!15.10!EGR4;;chr3:187454281..187454300,-!p8@BCL6!1.21!15.10!BCL6;;chr2:178129358..178129403,-!p5@NFE2L2!1.20!59.66!NFE2L2;;chr8:80679993..80680011,-!p1@HEY1!1.20!21.36!HEY1;;chr10:104155455..104155479,+!p1@NFKB2!1.19!209.92!NFKB2;;chr3:39195037..39195069,-!p2@CSRNP1!1.19!88.75!CSRNP1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.19!77.34!LRRFIP1;;chr1:161736038..161736056,+!p4@ATF6!1.19!33.51!ATF6;;chr9:102584278..102584285,+!p5@NR4A3!1.19!14.36!NR4A3;;chr20:47894569..47894799,-!p1@ZNFX1!1.18!365.33!ZNFX1;;chr19:45250948..45250998,+!p3@BCL3!1.18!35.72!BCL3;;chr19:47616992..47617011,-!p4@ZC3H4!1.18!30.20!ZC3H4;;chr20:48807456..48807475,+!p3@CEBPB!1.18!26.88!CEBPB;;chr6:126240442..126240459,+!p4@NCOA7!1.18!18.05!NCOA7;;chr1:221054853..221054873,+!p9@HLX!1.18!13.99!HLX;;chr19:19496624..19496660,+!p3@GATAD2A!1.17!62.24!GATAD2A;;chr2:28615716..28615733,+!p1@FOSL2!1.15!608.76!FOSL2;;chr21:36421535..36421610,-!p2@RUNX1!1.15!47.14!RUNX1;;chr13:41635029..41635044,-!p4@ELF1!1.15!27.62!ELF1;;chr10:35416142..35416169,+!p3@CREM!1.14!33.88!CREM;;chr20:48807648..48807671,+!p9@CEBPB!1.14!18.41!CEBPB;;chr11:65430586..65430593,-!p5@RELA!1.14!14.36!RELA;;chr10:104155680..104155687,+!p6@NFKB2!1.14!12.89!NFKB2;;chr2:178129414..178129517,-!p1@NFE2L2!1.13!484.29!NFE2L2;;chr10:114709999..114710031,+!p1@TCF7L2!1.13!291.31!TCF7L2;;chr1:158979872..15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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11875-125C3
|fonse_treatment=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11875-125C3
|fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11875-125C3
|fonse_treatment_closure=EFO:0000369,FF:0000335,FF:0000625,FF:0011108,FF:11875-125C3
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520lipopolysaccharide%252c%2520donor2.CNhs13533.11875-125C3.hg38.nobarcode.ctss.bed.gz
|id=FF:11875-125C3
|is_a=EFO:0002091;;FF:0011108
|is_obsolete=
|library_id=CNhs13533
|library_id_phase_based=2:CNhs13533
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11875
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11875
|name=CD14+ monocytes - treated with lipopolysaccharide, donor2
|namespace=
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|profile_hcage=CNhs13533,LSID1029,release012,COMPLETED
|profile_rnaseq=
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|rna_box=125
|rna_catalog_number=
|rna_concentration=0.43418
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=D4-6
|rna_od260/230=1.15
|rna_od260/280=1.91
|rna_position=C3
|rna_rin=8.8
|rna_sample_type=total RNA
|rna_tube_id=125C3
|rna_weight_ug=1.95381
|sample_age=51
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=monocyte
|sample_collaboration=Christine Wells (University of Queensland)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor2
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.71060847010052e-278!GO:0005737;cytoplasm;5.64382437891705e-128!GO:0043227;membrane-bound organelle;2.38960508562363e-106!GO:0043231;intracellular membrane-bound organelle;5.09948972331796e-106!GO:0043226;organelle;1.31536797816634e-100!GO:0043229;intracellular organelle;7.68602958776368e-100!GO:0044444;cytoplasmic part;1.52651460185802e-79!GO:0005515;protein binding;1.08890780030621e-74!GO:0044422;organelle part;2.21611638189461e-68!GO:0044446;intracellular organelle part;7.76530554976678e-67!GO:0044237;cellular metabolic process;2.66523142427644e-62!GO:0044238;primary metabolic process;3.62505166463814e-61!GO:0032991;macromolecular complex;5.89328925396697e-59!GO:0003723;RNA binding;1.84841367721752e-58!GO:0043170;macromolecule metabolic process;4.2239960956448e-58!GO:0030529;ribonucleoprotein complex;9.94833819816276e-52!GO:0019538;protein metabolic process;1.52962367146051e-47!GO:0044428;nuclear part;3.08839693002205e-46!GO:0044267;cellular protein metabolic process;5.66934436795326e-44!GO:0044260;cellular macromolecule metabolic process;8.75195651738695e-44!GO:0006412;translation;1.37477492774781e-43!GO:0005634;nucleus;3.77621053643236e-43!GO:0033036;macromolecule localization;4.79465469514164e-42!GO:0045184;establishment of protein localization;7.73797875176312e-41!GO:0015031;protein transport;9.54661089271064e-41!GO:0008104;protein localization;5.83242651255961e-39!GO:0043233;organelle lumen;1.63167877933402e-37!GO:0031974;membrane-enclosed lumen;1.63167877933402e-37!GO:0005829;cytosol;2.17782928679564e-37!GO:0006915;apoptosis;2.20830823272198e-35!GO:0012501;programmed cell death;3.4806137400689e-35!GO:0008219;cell death;3.48617542922837e-33!GO:0016265;death;3.48617542922837e-33!GO:0009059;macromolecule biosynthetic process;8.32095386024757e-33!GO:0009058;biosynthetic process;2.10950456406075e-32!GO:0016071;mRNA metabolic process;9.25951021011305e-32!GO:0044249;cellular biosynthetic process;1.0721712076518e-31!GO:0031090;organelle membrane;3.98709599591355e-31!GO:0043283;biopolymer metabolic process;1.36781353099248e-30!GO:0006396;RNA processing;3.5075090811034e-30!GO:0043234;protein complex;6.31781999043588e-30!GO:0010467;gene expression;2.3698718141979e-29!GO:0016043;cellular component organization and biogenesis;3.06833098987149e-29!GO:0031981;nuclear lumen;1.24273659736268e-28!GO:0008380;RNA splicing;1.3792731827616e-27!GO:0046907;intracellular transport;1.82480830520895e-27!GO:0005840;ribosome;5.47135267930304e-27!GO:0006886;intracellular protein transport;5.5500268298872e-27!GO:0006397;mRNA processing;1.06189534715577e-26!GO:0002376;immune system process;9.86234802844852e-25!GO:0003735;structural constituent of ribosome;1.24910805821625e-24!GO:0005739;mitochondrion;3.68890196342362e-24!GO:0042981;regulation of apoptosis;5.30585281616453e-24!GO:0031967;organelle envelope;1.56516815017244e-23!GO:0043067;regulation of programmed cell death;1.7277780381439e-23!GO:0031975;envelope;2.86252707397689e-23!GO:0033279;ribosomal subunit;3.08261626966605e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.16062564513748e-23!GO:0000166;nucleotide binding;4.84037182622148e-22!GO:0065003;macromolecular complex assembly;1.25287321838953e-21!GO:0008134;transcription factor binding;1.37430762672809e-21!GO:0051649;establishment of cellular localization;1.71344702991093e-21!GO:0044445;cytosolic part;1.91986071214379e-21!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.16089916028338e-21!GO:0005681;spliceosome;5.46539266966127e-21!GO:0051641;cellular localization;6.6859583405597e-21!GO:0006955;immune response;3.04691925155643e-20!GO:0005654;nucleoplasm;3.7179683888929e-20!GO:0007243;protein kinase cascade;1.23249430761367e-19!GO:0016192;vesicle-mediated transport;9.40756942155061e-19!GO:0044429;mitochondrial part;1.18161131371247e-18!GO:0048523;negative regulation of cellular process;2.98623847373627e-18!GO:0022607;cellular component assembly;6.56804475770401e-18!GO:0048770;pigment granule;2.35763188671444e-17!GO:0042470;melanosome;2.35763188671444e-17!GO:0044265;cellular macromolecule catabolic process;3.57659729432539e-17!GO:0017111;nucleoside-triphosphatase activity;8.67479493758394e-17!GO:0016462;pyrophosphatase activity;9.44542221692622e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.51012512998162e-17!GO:0043285;biopolymer catabolic process;9.5266307702876e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.60861047750718e-17!GO:0044451;nucleoplasm part;1.0956359783521e-16!GO:0006512;ubiquitin cycle;1.17137994991546e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.25046086369503e-16!GO:0048519;negative regulation of biological process;1.84277561829696e-16!GO:0007242;intracellular signaling cascade;2.01207165863808e-16!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.47371890101804e-16!GO:0032553;ribonucleotide binding;4.51964619568054e-16!GO:0032555;purine ribonucleotide binding;4.51964619568054e-16!GO:0006119;oxidative phosphorylation;1.08713934998886e-15!GO:0017076;purine nucleotide binding;2.03625261281106e-15!GO:0043412;biopolymer modification;2.55703452970111e-15!GO:0005773;vacuole;5.30813995507903e-15!GO:0009057;macromolecule catabolic process;8.27317744689117e-15!GO:0019941;modification-dependent protein catabolic process;8.4566158424541e-15!GO:0043632;modification-dependent macromolecule catabolic process;8.4566158424541e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.00929483725794e-14!GO:0022618;protein-RNA complex assembly;1.00929483725794e-14!GO:0044257;cellular protein catabolic process;1.21341684693183e-14!GO:0043069;negative regulation of programmed cell death;1.23463753202234e-14!GO:0043066;negative regulation of apoptosis;1.3185685422761e-14!GO:0005740;mitochondrial envelope;1.81581953217239e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.9724817980871e-14!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.23461411212237e-14!GO:0006464;protein modification process;2.47317306056832e-14!GO:0006950;response to stress;2.62407126658709e-14!GO:0051246;regulation of protein metabolic process;3.29188754123391e-14!GO:0016874;ligase activity;3.52825566689681e-14!GO:0043687;post-translational protein modification;4.33918011453857e-14!GO:0031966;mitochondrial membrane;5.6002573056643e-14!GO:0006605;protein targeting;6.23219670835413e-14!GO:0006996;organelle organization and biogenesis;7.3133820139144e-14!GO:0050794;regulation of cellular process;9.96484346417086e-14!GO:0009615;response to virus;1.04888979183109e-13!GO:0065009;regulation of a molecular function;1.23813891154088e-13!GO:0048522;positive regulation of cellular process;1.4088014577769e-13!GO:0030163;protein catabolic process;2.03743287081233e-13!GO:0003712;transcription cofactor activity;2.27422010420383e-13!GO:0044248;cellular catabolic process;2.5283535418262e-13!GO:0016604;nuclear body;2.61540345322359e-13!GO:0000323;lytic vacuole;3.15078876155019e-13!GO:0005764;lysosome;3.15078876155019e-13!GO:0019866;organelle inner membrane;3.38916915088499e-13!GO:0006913;nucleocytoplasmic transport;4.7091312884949e-13!GO:0048518;positive regulation of biological process;6.87338687507519e-13!GO:0051169;nuclear transport;9.13790713259076e-13!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.17171085061939e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.22738337766078e-12!GO:0015935;small ribosomal subunit;1.98844554019236e-12!GO:0008135;translation factor activity, nucleic acid binding;2.13449253872975e-12!GO:0003676;nucleic acid binding;2.16602534382644e-12!GO:0006366;transcription from RNA polymerase II promoter;2.76022457640575e-12!GO:0006916;anti-apoptosis;3.50462778548776e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.67977151663164e-12!GO:0005768;endosome;4.05311551943577e-12!GO:0012505;endomembrane system;4.41924046198954e-12!GO:0006793;phosphorus metabolic process;5.21617051794758e-12!GO:0006796;phosphate metabolic process;5.21617051794758e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.58879690912415e-12!GO:0015934;large ribosomal subunit;6.36086546351733e-12!GO:0016070;RNA metabolic process;1.3199847774441e-11!GO:0016607;nuclear speck;1.38126022830928e-11!GO:0005794;Golgi apparatus;1.61816468401516e-11!GO:0050789;regulation of biological process;2.53123367541511e-11!GO:0003743;translation initiation factor activity;3.10921720020281e-11!GO:0006259;DNA metabolic process;5.74726726348084e-11!GO:0009967;positive regulation of signal transduction;5.85600426534855e-11!GO:0016310;phosphorylation;6.06116733144926e-11!GO:0006417;regulation of translation;9.5705034539517e-11!GO:0009607;response to biotic stimulus;9.68603080208158e-11!GO:0005743;mitochondrial inner membrane;1.02226624482859e-10!GO:0005524;ATP binding;1.03177035864531e-10!GO:0032559;adenyl ribonucleotide binding;1.24804766672844e-10!GO:0006413;translational initiation;1.48966428313858e-10!GO:0051186;cofactor metabolic process;1.53478758993186e-10!GO:0006457;protein folding;1.74800654976053e-10!GO:0065007;biological regulation;2.90576494865065e-10!GO:0043065;positive regulation of apoptosis;3.85249696267015e-10!GO:0050790;regulation of catalytic activity;4.63278692384811e-10!GO:0044455;mitochondrial membrane part;4.87963054373252e-10!GO:0030554;adenyl nucleotide binding;5.03428992337429e-10!GO:0048468;cell development;6.76133572784469e-10!GO:0043068;positive regulation of programmed cell death;7.30266688566173e-10!GO:0006446;regulation of translational initiation;1.18735059544868e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.26041822358935e-09!GO:0006732;coenzyme metabolic process;1.28801807983393e-09!GO:0016787;hydrolase activity;1.3264264978988e-09!GO:0009889;regulation of biosynthetic process;1.53926288121272e-09!GO:0005635;nuclear envelope;1.58639764335629e-09!GO:0008639;small protein conjugating enzyme activity;1.97391720229756e-09!GO:0019787;small conjugating protein ligase activity;2.31565808341367e-09!GO:0004842;ubiquitin-protein ligase activity;2.62225618815799e-09!GO:0007049;cell cycle;2.71378353321927e-09!GO:0005783;endoplasmic reticulum;2.8364899616762e-09!GO:0031326;regulation of cellular biosynthetic process;3.34684319308169e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.86283728842874e-09!GO:0009056;catabolic process;4.21411764462828e-09!GO:0019829;cation-transporting ATPase activity;4.28523514789334e-09!GO:0031324;negative regulation of cellular metabolic process;4.28606425737415e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;4.71663887128162e-09!GO:0000375;RNA splicing, via transesterification reactions;4.71663887128162e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.71663887128162e-09!GO:0051082;unfolded protein binding;5.49371484995969e-09!GO:0006917;induction of apoptosis;5.64193010836912e-09!GO:0005770;late endosome;6.272647619994e-09!GO:0005730;nucleolus;6.31109631300628e-09!GO:0015986;ATP synthesis coupled proton transport;6.44036780307941e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.44036780307941e-09!GO:0016887;ATPase activity;7.53515601991436e-09!GO:0012502;induction of programmed cell death;9.88100476634603e-09!GO:0042623;ATPase activity, coupled;9.88100476634603e-09!GO:0051726;regulation of cell cycle;1.10729809890434e-08!GO:0048193;Golgi vesicle transport;1.12071230508757e-08!GO:0000074;regulation of progression through cell cycle;1.28117558690324e-08!GO:0005525;GTP binding;1.42808879011234e-08!GO:0017038;protein import;1.45317212453601e-08!GO:0016564;transcription repressor activity;1.49240383335803e-08!GO:0006163;purine nucleotide metabolic process;2.26682392074588e-08!GO:0019899;enzyme binding;2.33475302901372e-08!GO:0006164;purine nucleotide biosynthetic process;2.39343726662439e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.66624546420347e-08!GO:0051170;nuclear import;2.88911632374853e-08!GO:0005746;mitochondrial respiratory chain;3.140766884899e-08!GO:0043228;non-membrane-bound organelle;4.02141333963085e-08!GO:0043232;intracellular non-membrane-bound organelle;4.02141333963085e-08!GO:0003924;GTPase activity;4.90360817736771e-08!GO:0009150;purine ribonucleotide metabolic process;5.00733353319015e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.02992713121959e-08!GO:0016881;acid-amino acid ligase activity;5.7323904544421e-08!GO:0006606;protein import into nucleus;6.71704345162999e-08!GO:0003713;transcription coactivator activity;6.86099718865393e-08!GO:0031965;nuclear membrane;7.46213415482425e-08!GO:0009259;ribonucleotide metabolic process;8.01085007972896e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.0446810292781e-08!GO:0009892;negative regulation of metabolic process;8.60711145276611e-08!GO:0045321;leukocyte activation;9.4948790506097e-08!GO:0006754;ATP biosynthetic process;1.00467891429803e-07!GO:0006753;nucleoside phosphate metabolic process;1.00467891429803e-07!GO:0004386;helicase activity;1.08142384369365e-07!GO:0016044;membrane organization and biogenesis;1.46982839922532e-07!GO:0005774;vacuolar membrane;1.47180161053959e-07!GO:0044453;nuclear membrane part;1.6080637742878e-07!GO:0009260;ribonucleotide biosynthetic process;1.60897761525728e-07!GO:0050136;NADH dehydrogenase (quinone) activity;1.63169817496436e-07!GO:0003954;NADH dehydrogenase activity;1.63169817496436e-07!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.63169817496436e-07!GO:0009966;regulation of signal transduction;1.72024653647999e-07!GO:0051188;cofactor biosynthetic process;2.01082350587562e-07!GO:0008047;enzyme activator activity;2.04469175517633e-07!GO:0009055;electron carrier activity;2.18958960871998e-07!GO:0009108;coenzyme biosynthetic process;2.19043306956407e-07!GO:0045786;negative regulation of progression through cell cycle;2.2377581653792e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.36075226432696e-07!GO:0007264;small GTPase mediated signal transduction;2.38617245536999e-07!GO:0006461;protein complex assembly;2.93998508165562e-07!GO:0008026;ATP-dependent helicase activity;3.34246503262981e-07!GO:0032561;guanyl ribonucleotide binding;3.70888917391774e-07!GO:0019001;guanyl nucleotide binding;3.70888917391774e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.9963568469404e-07!GO:0001816;cytokine production;4.33958255032236e-07!GO:0046034;ATP metabolic process;4.33958255032236e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.05030998630294e-07!GO:0008565;protein transporter activity;5.40009517219293e-07!GO:0044432;endoplasmic reticulum part;5.62581840714229e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.20744066909316e-07!GO:0044437;vacuolar part;7.41730448605196e-07!GO:0006752;group transfer coenzyme metabolic process;7.73113093780903e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.17403481648584e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.17403481648584e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.01515418842213e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.01515418842213e-07!GO:0006954;inflammatory response;9.26491771384268e-07!GO:0050657;nucleic acid transport;9.74029832916884e-07!GO:0051236;establishment of RNA localization;9.74029832916884e-07!GO:0050658;RNA transport;9.74029832916884e-07!GO:0005765;lysosomal membrane;1.17678441033553e-06!GO:0042775;organelle ATP synthesis coupled electron transport;1.17678441033553e-06!GO:0042773;ATP synthesis coupled electron transport;1.17678441033553e-06!GO:0016481;negative regulation of transcription;1.32862953238533e-06!GO:0016563;transcription activator activity;1.33125339712279e-06!GO:0006403;RNA localization;1.35827140786595e-06!GO:0044440;endosomal part;1.58653537687244e-06!GO:0010008;endosome membrane;1.58653537687244e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.59606449144257e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.59606449144257e-06!GO:0006952;defense response;1.60919335190432e-06!GO:0005793;ER-Golgi intermediate compartment;1.66361342462524e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.6846281604832e-06!GO:0003714;transcription corepressor activity;2.07601025608959e-06!GO:0046649;lymphocyte activation;2.13163048625955e-06!GO:0030964;NADH dehydrogenase complex (quinone);2.32620868348507e-06!GO:0045271;respiratory chain complex I;2.32620868348507e-06!GO:0005747;mitochondrial respiratory chain complex I;2.32620868348507e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.35708614444543e-06!GO:0031982;vesicle;2.53390878257334e-06!GO:0051707;response to other organism;2.57234365733174e-06!GO:0031980;mitochondrial lumen;3.43435752524529e-06!GO:0005759;mitochondrial matrix;3.43435752524529e-06!GO:0030097;hemopoiesis;3.51583336362659e-06!GO:0016197;endosome transport;3.66249065494601e-06!GO:0009141;nucleoside triphosphate metabolic process;4.0339829016047e-06!GO:0006974;response to DNA damage stimulus;4.08029017923148e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.12540450254014e-06!GO:0009893;positive regulation of metabolic process;4.16744641832324e-06!GO:0022402;cell cycle process;4.19235994289893e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.32464368685228e-06!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.56771785529648e-06!GO:0051338;regulation of transferase activity;5.7507208410408e-06!GO:0019222;regulation of metabolic process;5.94441245332761e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.00363059717826e-06!GO:0032446;protein modification by small protein conjugation;6.82085944365237e-06!GO:0030099;myeloid cell differentiation;6.83339467240545e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.83339467240545e-06!GO:0016568;chromatin modification;6.98582369813218e-06!GO:0001775;cell activation;7.32929962933013e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.51055994375964e-06!GO:0006897;endocytosis;9.19717580067504e-06!GO:0010324;membrane invagination;9.19717580067504e-06!GO:0005643;nuclear pore;9.76807254129119e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.94082974344427e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.00038120424643e-05!GO:0015399;primary active transmembrane transporter activity;1.00038120424643e-05!GO:0043549;regulation of kinase activity;1.00155411355973e-05!GO:0048475;coated membrane;1.1285282777048e-05!GO:0030117;membrane coat;1.1285282777048e-05!GO:0051028;mRNA transport;1.15857666937222e-05!GO:0016567;protein ubiquitination;1.20664131403875e-05!GO:0006323;DNA packaging;1.42109737099421e-05!GO:0051789;response to protein stimulus;1.42729411132355e-05!GO:0006986;response to unfolded protein;1.42729411132355e-05!GO:0004298;threonine endopeptidase activity;1.43501305063294e-05!GO:0005789;endoplasmic reticulum membrane;1.55043669902326e-05!GO:0031410;cytoplasmic vesicle;1.62010370963551e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.67185101017293e-05!GO:0006401;RNA catabolic process;1.71656631983335e-05!GO:0008632;apoptotic program;1.9926153921432e-05!GO:0003724;RNA helicase activity;2.07349366978967e-05!GO:0031988;membrane-bound vesicle;2.08754477600329e-05!GO:0045859;regulation of protein kinase activity;2.13843127926033e-05!GO:0031252;leading edge;2.49090428565774e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.69767946809313e-05!GO:0030695;GTPase regulator activity;2.93145966535373e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.03827710225647e-05!GO:0043566;structure-specific DNA binding;3.29061167313675e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.67590580402127e-05!GO:0030120;vesicle coat;3.68874531805369e-05!GO:0030662;coated vesicle membrane;3.68874531805369e-05!GO:0042110;T cell activation;4.1226702764996e-05!GO:0006281;DNA repair;4.75064611544414e-05!GO:0002521;leukocyte differentiation;5.54461023202019e-05!GO:0031902;late endosome membrane;5.68680229164716e-05!GO:0046519;sphingoid metabolic process;5.74814820926037e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.74814820926037e-05!GO:0002520;immune system development;6.0396502830483e-05!GO:0007050;cell cycle arrest;7.23853700796157e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.53488234453908e-05!GO:0045941;positive regulation of transcription;7.57336218472817e-05!GO:0031325;positive regulation of cellular metabolic process;8.04100920888228e-05!GO:0006613;cotranslational protein targeting to membrane;8.59449041076465e-05!GO:0051336;regulation of hydrolase activity;8.65199023196591e-05!GO:0005096;GTPase activator activity;8.95438823420697e-05!GO:0048534;hemopoietic or lymphoid organ development;9.34069211882519e-05!GO:0008234;cysteine-type peptidase activity;0.000101250120642933!GO:0006672;ceramide metabolic process;0.000126669618546461!GO:0046930;pore complex;0.000138687388549107!GO:0045259;proton-transporting ATP synthase complex;0.000147569508062655!GO:0030532;small nuclear ribonucleoprotein complex;0.000147685668483627!GO:0006402;mRNA catabolic process;0.000147685668483627!GO:0046822;regulation of nucleocytoplasmic transport;0.000149968834209321!GO:0009060;aerobic respiration;0.000151185406740565!GO:0002757;immune response-activating signal transduction;0.000151937634998269!GO:0065002;intracellular protein transport across a membrane;0.000151937634998269!GO:0043492;ATPase activity, coupled to movement of substances;0.000160002265390765!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000161405715134694!GO:0051276;chromosome organization and biogenesis;0.000171574044635404!GO:0051427;hormone receptor binding;0.000180929652884783!GO:0004674;protein serine/threonine kinase activity;0.000185220326659961!GO:0003697;single-stranded DNA binding;0.000190631258977528!GO:0051168;nuclear export;0.000193266005906045!GO:0005057;receptor signaling protein activity;0.000200164256691133!GO:0009719;response to endogenous stimulus;0.000210206274036146!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000228132150975592!GO:0005769;early endosome;0.000229141470566148!GO:0016740;transferase activity;0.000238279040921023!GO:0002764;immune response-regulating signal transduction;0.000242908912489069!GO:0022890;inorganic cation transmembrane transporter activity;0.000248385751775402!GO:0035257;nuclear hormone receptor binding;0.000292119599342465!GO:0032940;secretion by cell;0.000292119599342465!GO:0045893;positive regulation of transcription, DNA-dependent;0.000297183731909132!GO:0009117;nucleotide metabolic process;0.000301580526782883!GO:0008186;RNA-dependent ATPase activity;0.000310558124334929!GO:0007041;lysosomal transport;0.000321675618459289!GO:0009611;response to wounding;0.000323125115819397!GO:0060090;molecular adaptor activity;0.000339298261490477!GO:0042254;ribosome biogenesis and assembly;0.000343010006379095!GO:0007259;JAK-STAT cascade;0.000349489343989243!GO:0046983;protein dimerization activity;0.000368582483112911!GO:0051223;regulation of protein transport;0.000373046372328493!GO:0005885;Arp2/3 protein complex;0.00037341376925034!GO:0045333;cellular respiration;0.000387732516734924!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000424065193288038!GO:0008654;phospholipid biosynthetic process;0.000453731415249177!GO:0030036;actin cytoskeleton organization and biogenesis;0.000474418652278659!GO:0000245;spliceosome assembly;0.000486556240246251!GO:0044431;Golgi apparatus part;0.000503237898250574!GO:0043085;positive regulation of catalytic activity;0.000518846606901918!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000525499820645744!GO:0007034;vacuolar transport;0.000530766465328761!GO:0006818;hydrogen transport;0.000558510911417747!GO:0031323;regulation of cellular metabolic process;0.000599270954618694!GO:0022415;viral reproductive process;0.000616261824077197!GO:0001726;ruffle;0.000672097521346385!GO:0015992;proton transport;0.00069289472738995!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000693167967933974!GO:0004812;aminoacyl-tRNA ligase activity;0.000693167967933974!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000693167967933974!GO:0005083;small GTPase regulator activity;0.000696277734808656!GO:0005761;mitochondrial ribosome;0.000696277734808656!GO:0000313;organellar ribosome;0.000696277734808656!GO:0005798;Golgi-associated vesicle;0.000705728155997573!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.000725426987218841!GO:0002252;immune effector process;0.000839653431148023!GO:0045637;regulation of myeloid cell differentiation;0.000858250371353191!GO:0051090;regulation of transcription factor activity;0.0008702398078817!GO:0004004;ATP-dependent RNA helicase activity;0.000875413491275307!GO:0043038;amino acid activation;0.000888489623761127!GO:0006418;tRNA aminoacylation for protein translation;0.000888489623761127!GO:0043039;tRNA aminoacylation;0.000888489623761127!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00090370084056767!GO:0033157;regulation of intracellular protein transport;0.000925737040277069!GO:0042306;regulation of protein import into nucleus;0.000925737040277069!GO:0006919;caspase activation;0.000943488262700562!GO:0006612;protein targeting to membrane;0.000957619821184527!GO:0045892;negative regulation of transcription, DNA-dependent;0.00102419484173912!GO:0043281;regulation of caspase activity;0.00103390446334571!GO:0006399;tRNA metabolic process;0.00107832203877576!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00109926595614008!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00111409732298931!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00113476595478145!GO:0007033;vacuole organization and biogenesis;0.00115148012046979!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00115148012046979!GO:0065004;protein-DNA complex assembly;0.00118844979855843!GO:0007265;Ras protein signal transduction;0.00123164243043874!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00123930141075757!GO:0007040;lysosome organization and biogenesis;0.00128184881522104!GO:0005667;transcription factor complex;0.00128380051570895!GO:0003729;mRNA binding;0.00129747648664447!GO:0001817;regulation of cytokine production;0.00131693508733498!GO:0006643;membrane lipid metabolic process;0.00136390296354295!GO:0051059;NF-kappaB binding;0.00137401933625205!GO:0009165;nucleotide biosynthetic process;0.00146857481664382!GO:0007005;mitochondrion organization and biogenesis;0.00149995610203613!GO:0043280;positive regulation of caspase activity;0.00154864127152638!GO:0016301;kinase activity;0.00155287838965821!GO:0005741;mitochondrial outer membrane;0.0015785491867083!GO:0002274;myeloid leukocyte activation;0.00164984786133774!GO:0016779;nucleotidyltransferase activity;0.00164984786133774!GO:0000151;ubiquitin ligase complex;0.00187590130246286!GO:0018193;peptidyl-amino acid modification;0.00190019907749097!GO:0030218;erythrocyte differentiation;0.0019259154748925!GO:0005637;nuclear inner membrane;0.00193713285898245!GO:0042221;response to chemical stimulus;0.00198366118285896!GO:0051247;positive regulation of protein metabolic process;0.00209090454845508!GO:0016251;general RNA polymerase II transcription factor activity;0.00229287188756088!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.002346940918504!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00240335867639291!GO:0042990;regulation of transcription factor import into nucleus;0.00247773247944952!GO:0042991;transcription factor import into nucleus;0.00247773247944952!GO:0042113;B cell activation;0.00255839058415199!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00257994023491507!GO:0051187;cofactor catabolic process;0.00259607406275419!GO:0031968;organelle outer membrane;0.00280885954555925!GO:0001819;positive regulation of cytokine production;0.00294410349589641!GO:0019904;protein domain specific binding;0.00307076655033232!GO:0042107;cytokine metabolic process;0.00307832872287106!GO:0033116;ER-Golgi intermediate compartment membrane;0.00314312484386242!GO:0006891;intra-Golgi vesicle-mediated transport;0.00314312484386242!GO:0031072;heat shock protein binding;0.00318571631877254!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00335678139770648!GO:0019220;regulation of phosphate metabolic process;0.00337980538235854!GO:0051174;regulation of phosphorus metabolic process;0.00337980538235854!GO:0042613;MHC class II protein complex;0.00342659422284483!GO:0008383;manganese superoxide dismutase activity;0.00355049763666722!GO:0001315;age-dependent response to reactive oxygen species;0.00355049763666722!GO:0002250;adaptive immune response;0.00361507928675708!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.00361507928675708!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00365764435757404!GO:0006099;tricarboxylic acid cycle;0.00366874332779075!GO:0046356;acetyl-CoA catabolic process;0.00366874332779075!GO:0050851;antigen receptor-mediated signaling pathway;0.00372557649400619!GO:0030029;actin filament-based process;0.00381647992373012!GO:0033673;negative regulation of kinase activity;0.00387942991823736!GO:0006469;negative regulation of protein kinase activity;0.00387942991823736!GO:0004197;cysteine-type endopeptidase activity;0.00389321128553281!GO:0005070;SH3/SH2 adaptor activity;0.00394522373605399!GO:0002684;positive regulation of immune system process;0.00394904229603835!GO:0043623;cellular protein complex assembly;0.00397054603042623!GO:0043433;negative regulation of transcription factor activity;0.00400208455263181!GO:0004860;protein kinase inhibitor activity;0.0040955802101171!GO:0006091;generation of precursor metabolites and energy;0.00424304995933131!GO:0006468;protein amino acid phosphorylation;0.00428373595749501!GO:0002682;regulation of immune system process;0.00428968981810209!GO:0009891;positive regulation of biosynthetic process;0.00430263921106642!GO:0042108;positive regulation of cytokine biosynthetic process;0.00434328337678188!GO:0019210;kinase inhibitor activity;0.00466093974777263!GO:0042089;cytokine biosynthetic process;0.00467341946788999!GO:0016363;nuclear matrix;0.00501058756709478!GO:0019867;outer membrane;0.00505497318867307!GO:0042802;identical protein binding;0.00524569613467629!GO:0010468;regulation of gene expression;0.00544908231794438!GO:0051348;negative regulation of transferase activity;0.00546353569113492!GO:0030149;sphingolipid catabolic process;0.00549732938765268!GO:0050900;leukocyte migration;0.00569794111423607!GO:0051098;regulation of binding;0.00591968531428632!GO:0003725;double-stranded RNA binding;0.00596377032658827!GO:0006665;sphingolipid metabolic process;0.00596377032658827!GO:0000082;G1/S transition of mitotic cell cycle;0.00596377032658827!GO:0006333;chromatin assembly or disassembly;0.00597003961879838!GO:0050778;positive regulation of immune response;0.00611210672329505!GO:0030521;androgen receptor signaling pathway;0.00623706406540681!GO:0016072;rRNA metabolic process;0.00631383724534763!GO:0019882;antigen processing and presentation;0.00637096453245531!GO:0031901;early endosome membrane;0.00637096453245531!GO:0046966;thyroid hormone receptor binding;0.00637913323109792!GO:0045454;cell redox homeostasis;0.00644929752633115!GO:0045727;positive regulation of translation;0.00645458254576945!GO:0046467;membrane lipid biosynthetic process;0.00645890299045739!GO:0048872;homeostasis of number of cells;0.0066503614353527!GO:0000139;Golgi membrane;0.0066503614353527!GO:0043021;ribonucleoprotein binding;0.00667942662945517!GO:0044262;cellular carbohydrate metabolic process;0.00671841405038725!GO:0005099;Ras GTPase activator activity;0.00676213533059719!GO:0030098;lymphocyte differentiation;0.00709576510380241!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00717630368687873!GO:0003690;double-stranded DNA binding;0.00791385570864703!GO:0045045;secretory pathway;0.00791830743174268!GO:0045646;regulation of erythrocyte differentiation;0.00809570868997866!GO:0006935;chemotaxis;0.00809570868997866!GO:0042330;taxis;0.00809570868997866!GO:0006364;rRNA processing;0.00824950675525719!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00834625140529435!GO:0006611;protein export from nucleus;0.00839270359804953!GO:0048487;beta-tubulin binding;0.00852784498547014!GO:0008283;cell proliferation;0.00870822869479033!GO:0006607;NLS-bearing substrate import into nucleus;0.00871850468050647!GO:0000278;mitotic cell cycle;0.00871850468050647!GO:0009109;coenzyme catabolic process;0.00877715713061979!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00879184574151073!GO:0032386;regulation of intracellular transport;0.00916630052542226!GO:0006084;acetyl-CoA metabolic process;0.00917300887801194!GO:0043087;regulation of GTPase activity;0.00926301570937548!GO:0048500;signal recognition particle;0.00926628619266364!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00926628619266364!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00926628619266364!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00926628619266364!GO:0008637;apoptotic mitochondrial changes;0.00930064782713267!GO:0019207;kinase regulator activity;0.00954299161632452!GO:0043621;protein self-association;0.00954299161632452!GO:0051251;positive regulation of lymphocyte activation;0.00959399232121665!GO:0005813;centrosome;0.00967617891484492!GO:0030518;steroid hormone receptor signaling pathway;0.00981963209824334!GO:0032943;mononuclear cell proliferation;0.00981963209824334!GO:0046651;lymphocyte proliferation;0.00981963209824334!GO:0019377;glycolipid catabolic process;0.00997125349670424!GO:0030658;transport vesicle membrane;0.0101430511959446!GO:0002440;production of molecular mediator of immune response;0.0101861568227337!GO:0051092;activation of NF-kappaB transcription factor;0.0101861568227337!GO:0050776;regulation of immune response;0.0103431264083852!GO:0033367;protein localization in mast cell secretory granule;0.0103431264083852!GO:0033365;protein localization in organelle;0.0103431264083852!GO:0033371;T cell secretory granule organization and biogenesis;0.0103431264083852!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0103431264083852!GO:0033375;protease localization in T cell secretory granule;0.0103431264083852!GO:0042629;mast cell granule;0.0103431264083852!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0103431264083852!GO:0033364;mast cell secretory granule organization and biogenesis;0.0103431264083852!GO:0033380;granzyme B localization in T cell secretory granule;0.0103431264083852!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0103431264083852!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0103431264083852!GO:0033368;protease localization in mast cell secretory granule;0.0103431264083852!GO:0033366;protein localization in secretory granule;0.0103431264083852!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0103431264083852!GO:0033374;protein localization in T cell secretory granule;0.0103431264083852!GO:0005484;SNAP receptor activity;0.0108970839898593!GO:0031625;ubiquitin protein ligase binding;0.0109760905199609!GO:0002573;myeloid leukocyte differentiation;0.0113556889082576!GO:0051345;positive regulation of hydrolase activity;0.0115224080529359!GO:0005152;interleukin-1 receptor antagonist activity;0.0115968916889959!GO:0030353;fibroblast growth factor receptor antagonist activity;0.0115968916889959!GO:0004185;serine carboxypeptidase activity;0.0118087495396118!GO:0042325;regulation of phosphorylation;0.0122674536535447!GO:0005048;signal sequence binding;0.0122674536535447!GO:0019058;viral infectious cycle;0.0129982874772371!GO:0042035;regulation of cytokine biosynthetic process;0.0130997272953196!GO:0030118;clathrin coat;0.0134062463630132!GO:0006749;glutathione metabolic process;0.0134940461208538!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0138332725628473!GO:0045047;protein targeting to ER;0.0138332725628473!GO:0030217;T cell differentiation;0.0140641417330087!GO:0006352;transcription initiation;0.0140641417330087!GO:0048471;perinuclear region of cytoplasm;0.014438431601201!GO:0001776;leukocyte homeostasis;0.0145125068513311!GO:0045639;positive regulation of myeloid cell differentiation;0.0145401776807482!GO:0030127;COPII vesicle coat;0.0149514191649399!GO:0012507;ER to Golgi transport vesicle membrane;0.0149514191649399!GO:0002444;myeloid leukocyte mediated immunity;0.0150155415620571!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0155679891221226!GO:0002819;regulation of adaptive immune response;0.0155679891221226!GO:0008139;nuclear localization sequence binding;0.0156220592174557!GO:0002237;response to molecule of bacterial origin;0.015959533288117!GO:0006368;RNA elongation from RNA polymerase II promoter;0.015983130015327!GO:0030503;regulation of cell redox homeostasis;0.0160835956826799!GO:0008333;endosome to lysosome transport;0.0163842378336021!GO:0051049;regulation of transport;0.0165318838409132!GO:0019079;viral genome replication;0.0165876932992675!GO:0051329;interphase of mitotic cell cycle;0.0168120004869994!GO:0048146;positive regulation of fibroblast proliferation;0.0168434508328766!GO:0000209;protein polyubiquitination;0.0169707464401004!GO:0046479;glycosphingolipid catabolic process;0.0169707464401004!GO:0002443;leukocyte mediated immunity;0.0174898933058086!GO:0003727;single-stranded RNA binding;0.0177196633130802!GO:0051023;regulation of immunoglobulin secretion;0.0177524881833361!GO:0045994;positive regulation of translational initiation by iron;0.0177524881833361!GO:0030134;ER to Golgi transport vesicle;0.0180020149421586!GO:0030100;regulation of endocytosis;0.0180297979068109!GO:0030867;rough endoplasmic reticulum membrane;0.0183837341500755!GO:0044255;cellular lipid metabolic process;0.018773796610124!GO:0032763;regulation of mast cell cytokine production;0.0199101989459368!GO:0032762;mast cell cytokine production;0.0199101989459368!GO:0006984;ER-nuclear signaling pathway;0.0200357288150533!GO:0008286;insulin receptor signaling pathway;0.0200882039001416!GO:0000785;chromatin;0.0202248323648544!GO:0048144;fibroblast proliferation;0.0202248323648544!GO:0048145;regulation of fibroblast proliferation;0.0202248323648544!GO:0002467;germinal center formation;0.020556508717669!GO:0030041;actin filament polymerization;0.0205569339054338!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0205896195441162!GO:0019752;carboxylic acid metabolic process;0.0206808461326261!GO:0030137;COPI-coated vesicle;0.0218565384193999!GO:0030176;integral to endoplasmic reticulum membrane;0.0218930075867512!GO:0042092;T-helper 2 type immune response;0.021954499139174!GO:0008624;induction of apoptosis by extracellular signals;0.021954499139174!GO:0000165;MAPKKK cascade;0.0226438754486304!GO:0030660;Golgi-associated vesicle membrane;0.022737768604067!GO:0030027;lamellipodium;0.0228785801994555!GO:0043300;regulation of leukocyte degranulation;0.0230716347626912!GO:0030663;COPI coated vesicle membrane;0.0230716347626912!GO:0030126;COPI vesicle coat;0.0230716347626912!GO:0042611;MHC protein complex;0.0230716347626912!GO:0007162;negative regulation of cell adhesion;0.0230716347626912!GO:0008610;lipid biosynthetic process;0.0231611120553066!GO:0000049;tRNA binding;0.0231611120553066!GO:0045576;mast cell activation;0.0233789851483556!GO:0045746;negative regulation of Notch signaling pathway;0.0234061468404495!GO:0030258;lipid modification;0.0236269688255288!GO:0033549;MAP kinase phosphatase activity;0.0236269688255288!GO:0017017;MAP kinase tyrosine/serine/threonine phosphatase activity;0.0236269688255288!GO:0046631;alpha-beta T cell activation;0.0237967768019513!GO:0051325;interphase;0.0241037594676428!GO:0003702;RNA polymerase II transcription factor activity;0.0244033053942414!GO:0019371;cyclooxygenase pathway;0.0244213137548307!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0248222795288726!GO:0006354;RNA elongation;0.0249125021779293!GO:0046466;membrane lipid catabolic process;0.0249125021779293!GO:0002697;regulation of immune effector process;0.0249514965816533!GO:0050865;regulation of cell activation;0.0249876843028586!GO:0006082;organic acid metabolic process;0.0251038681724884!GO:0019901;protein kinase binding;0.0251657084680212!GO:0045089;positive regulation of innate immune response;0.0251657084680212!GO:0045088;regulation of innate immune response;0.0251657084680212!GO:0031328;positive regulation of cellular biosynthetic process;0.0251884605164063!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0252921032727881!GO:0016791;phosphoric monoester hydrolase activity;0.0253341562910756!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0256952759568491!GO:0006350;transcription;0.025831221216163!GO:0045936;negative regulation of phosphate metabolic process;0.0258583102388711!GO:0005815;microtubule organizing center;0.0259419927691304!GO:0051091;positive regulation of transcription factor activity;0.0268075026581112!GO:0002224;toll-like receptor signaling pathway;0.0271491982661827!GO:0002221;pattern recognition receptor signaling pathway;0.0271491982661827!GO:0043022;ribosome binding;0.0271491982661827!GO:0006310;DNA recombination;0.0272008774726542!GO:0007165;signal transduction;0.027212095499805!GO:0050811;GABA receptor binding;0.0273537667303294!GO:0002824;positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.027442581138682!GO:0002821;positive regulation of adaptive immune response;0.027442581138682!GO:0050870;positive regulation of T cell activation;0.0274768235285865!GO:0000339;RNA cap binding;0.0278576148639756!GO:0051051;negative regulation of transport;0.028348403041805!GO:0051101;regulation of DNA binding;0.0283649371000146!GO:0042326;negative regulation of phosphorylation;0.0287854939230045!GO:0051052;regulation of DNA metabolic process;0.0287854939230045!GO:0015631;tubulin binding;0.0288907513406354!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0290803650028326!GO:0008312;7S RNA binding;0.0297068841348468!GO:0051252;regulation of RNA metabolic process;0.0297239094383571!GO:0005149;interleukin-1 receptor binding;0.0298513663524599!GO:0000287;magnesium ion binding;0.0299437482035007!GO:0051249;regulation of lymphocyte activation;0.0308986772637454!GO:0004177;aminopeptidase activity;0.0311920866330429!GO:0015923;mannosidase activity;0.0325867780401809!GO:0005350;pyrimidine transmembrane transporter activity;0.0332988419128207!GO:0015855;pyrimidine transport;0.0332988419128207!GO:0015288;porin activity;0.0332988419128207!GO:0045792;negative regulation of cell size;0.0335905885680129!GO:0030522;intracellular receptor-mediated signaling pathway;0.033598631682705!GO:0019883;antigen processing and presentation of endogenous antigen;0.033598631682705!GO:0030968;unfolded protein response;0.0339315023795979!GO:0006458;'de novo' protein folding;0.0341752618322662!GO:0051084;'de novo' posttranslational protein folding;0.0341752618322662!GO:0030377;U-plasminogen activator receptor activity;0.0341893444223826!GO:0032760;positive regulation of tumor necrosis factor production;0.0342066656001048!GO:0005788;endoplasmic reticulum lumen;0.0342355044368426!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0342355044368426!GO:0015036;disulfide oxidoreductase activity;0.0346622051264178!GO:0008629;induction of apoptosis by intracellular signals;0.0346877086680138!GO:0030155;regulation of cell adhesion;0.0346877086680138!GO:0042832;defense response to protozoan;0.0347269303732106!GO:0001562;response to protozoan;0.0353341192729407!GO:0043299;leukocyte degranulation;0.0354369261946867!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0355540773797529!GO:0051347;positive regulation of transferase activity;0.0355540773797529!GO:0042992;negative regulation of transcription factor import into nucleus;0.0355540773797529!GO:0042308;negative regulation of protein import into nucleus;0.0355540773797529!GO:0051540;metal cluster binding;0.035849799237918!GO:0051536;iron-sulfur cluster binding;0.035849799237918!GO:0000738;DNA catabolic process, exonucleolytic;0.035849799237918!GO:0019783;small conjugating protein-specific protease activity;0.0361689773255819!GO:0051881;regulation of mitochondrial membrane potential;0.0366235351076636!GO:0017166;vinculin binding;0.0368817324521387!GO:0042098;T cell proliferation;0.0372259571391205!GO:0042348;NF-kappaB import into nucleus;0.0388210383294564!GO:0042345;regulation of NF-kappaB import into nucleus;0.0388210383294564!GO:0030308;negative regulation of cell growth;0.038876788628412!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0390627551669096!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0390627551669096!GO:0006260;DNA replication;0.0391866680933312!GO:0005905;coated pit;0.0392357057052551!GO:0000096;sulfur amino acid metabolic process;0.0392730211632229!GO:0031327;negative regulation of cellular biosynthetic process;0.039281121662836!GO:0005694;chromosome;0.0392827971158579!GO:0006516;glycoprotein catabolic process;0.0396839755240888!GO:0050681;androgen receptor binding;0.0396839755240888!GO:0005869;dynactin complex;0.0404994597429903!GO:0030693;caspase activity;0.0406416797372632!GO:0043407;negative regulation of MAP kinase activity;0.0407817987831211!GO:0051900;regulation of mitochondrial depolarization;0.0415893362448718!GO:0007006;mitochondrial membrane organization and biogenesis;0.0415893362448718!GO:0030031;cell projection biogenesis;0.0416112629344361!GO:0006650;glycerophospholipid metabolic process;0.0417851814354085!GO:0006302;double-strand break repair;0.0417851814354085!GO:0048002;antigen processing and presentation of peptide antigen;0.0417851814354085!GO:0009306;protein secretion;0.0417851814354085!GO:0035035;histone acetyltransferase binding;0.0417851814354085!GO:0017091;AU-rich element binding;0.0422003844213121!GO:0050779;RNA destabilization;0.0422003844213121!GO:0000289;poly(A) tail shortening;0.0422003844213121!GO:0008361;regulation of cell size;0.0425451791400328!GO:0042088;T-helper 1 type immune response;0.04292835784773!GO:0050727;regulation of inflammatory response;0.04292835784773!GO:0031347;regulation of defense response;0.04292835784773!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0429990510363253!GO:0019955;cytokine binding;0.0430340180809091!GO:0002253;activation of immune response;0.0432127768194023!GO:0030433;ER-associated protein catabolic process;0.0436649652250066!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0436649652250066!GO:0030384;phosphoinositide metabolic process;0.0437335137804883!GO:0051087;chaperone binding;0.0437335137804883!GO:0008320;protein transmembrane transporter activity;0.0437335137804883!GO:0003746;translation elongation factor activity;0.0438539139034452!GO:0008538;proteasome activator activity;0.0440488591573652!GO:0043304;regulation of mast cell degranulation;0.0442829237054551!GO:0042405;nuclear inclusion body;0.0442829237054551!GO:0030133;transport vesicle;0.0444042391301801!GO:0006595;polyamine metabolic process;0.0444263248540343!GO:0004843;ubiquitin-specific protease activity;0.044441365566264!GO:0003711;transcription elongation regulator activity;0.0452178504650651!GO:0051235;maintenance of localization;0.0453948664951002!GO:0051240;positive regulation of multicellular organismal process;0.0456958150105409!GO:0004722;protein serine/threonine phosphatase activity;0.0456958150105409!GO:0019887;protein kinase regulator activity;0.0457062716527005!GO:0051050;positive regulation of transport;0.045860933257254!GO:0042585;germinal vesicle;0.0461222700875291!GO:0030595;leukocyte chemotaxis;0.0466101255917452!GO:0032318;regulation of Ras GTPase activity;0.0466888456579972!GO:0002263;cell activation during immune response;0.0466888456579972!GO:0042093;T-helper cell differentiation;0.0466888456579972!GO:0002366;leukocyte activation during immune response;0.0466888456579972!GO:0002293;alpha-beta T cell differentiation during immune response;0.0466888456579972!GO:0002294;CD4-positive, alpha-beta T cell differentiation during immune response;0.0466888456579972!GO:0002285;lymphocyte activation during immune response;0.0466888456579972!GO:0002292;T cell differentiation during immune response;0.0466888456579972!GO:0002286;T cell activation during immune response;0.0466888456579972!GO:0006968;cellular defense response;0.0467557915541016!GO:0015327;cystine:glutamate antiporter activity;0.047600583600396!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0488918692212857!GO:0009890;negative regulation of biosynthetic process;0.0488918692212857!GO:0008017;microtubule binding;0.0491591529443171!GO:0030119;AP-type membrane coat adaptor complex;0.0492072894391948!GO:0005138;interleukin-6 receptor binding;0.0492905129953416!GO:0000119;mediator complex;0.0494443869103972!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0494443869103972!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0494443869103972!GO:0009126;purine nucleoside monophosphate metabolic process;0.0494443869103972!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0494443869103972!GO:0051607;defense response to virus;0.0494443869103972!GO:0046426;negative regulation of JAK-STAT cascade;0.0494772303913257!GO:0012506;vesicle membrane;0.0495336491231641!GO:0045603;positive regulation of endothelial cell differentiation;0.0498695851257075
|sample_id=11875
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11875-125C3;search_select_hide=table117:FF:11875-125C3
}}
}}

Latest revision as of 18:25, 4 June 2020

Name:CD14+ monocytes - treated with lipopolysaccharide, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13533
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age51
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD4-6
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00006012
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13533 CAGE DRX008160 DRR009032
Accession ID Hg19

Library idBAMCTSS
CNhs13533 DRZ000457 DRZ001842
Accession ID Hg38

Library idBAMCTSS
CNhs13533 DRZ011807 DRZ013192
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.861
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.152
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.554
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.464
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.056
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.136
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.596
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.136
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.671
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.454
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0.393
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.447
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.528
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.596
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.136
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.393
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.219
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.323
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0605
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.323
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.736
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.24
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.774
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.506
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.459
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.922
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.592
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.136
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.534
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.454
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.506
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.329
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.748
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.993
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.323
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.638
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.191
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.596
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.136
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.393
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.454
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.635
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.323
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.136
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.136
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.136
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.136
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13533

Jaspar motifP-value
MA0002.21.53917e-7
MA0003.10.63
MA0004.10.335
MA0006.10.908
MA0007.10.974
MA0009.10.469
MA0014.10.867
MA0017.10.223
MA0018.20.129
MA0019.10.54
MA0024.10.00592
MA0025.10.00155
MA0027.10.962
MA0028.10.13
MA0029.10.135
MA0030.10.118
MA0031.10.301
MA0035.20.309
MA0038.10.601
MA0039.20.867
MA0040.10.746
MA0041.10.417
MA0042.10.936
MA0043.19.80958e-9
MA0046.10.0227
MA0047.20.334
MA0048.10.689
MA0050.13.31653e-15
MA0051.11.42645e-9
MA0052.10.173
MA0055.10.508
MA0057.10.398
MA0058.10.152
MA0059.10.182
MA0060.12.44784e-7
MA0061.18.97438e-21
MA0062.20.576
MA0065.20.0289
MA0066.10.052
MA0067.16.21139e-6
MA0068.10.534
MA0069.10.771
MA0070.10.0237
MA0071.10.552
MA0072.10.621
MA0073.10.441
MA0074.10.2
MA0076.10.147
MA0077.10.332
MA0078.10.555
MA0079.20.188
MA0080.21.05452e-11
MA0081.14.76743e-4
MA0083.10.518
MA0084.10.521
MA0087.10.636
MA0088.10.588
MA0090.10.477
MA0091.10.898
MA0092.10.391
MA0093.10.361
MA0099.22.73311e-45
MA0100.10.757
MA0101.11.09862e-23
MA0102.21.0476e-9
MA0103.10.0343
MA0104.20.292
MA0105.11.37784e-23
MA0106.10.962
MA0107.13.05257e-30
MA0108.20.705
MA0111.10.549
MA0112.24.9562e-4
MA0113.10.799
MA0114.10.209
MA0115.10.704
MA0116.11.68758e-4
MA0117.10.0528
MA0119.10.154
MA0122.10.599
MA0124.10.244
MA0125.10.272
MA0131.10.451
MA0135.10.386
MA0136.19.77454e-13
MA0137.20.0225
MA0138.20.138
MA0139.10.795
MA0140.10.477
MA0141.10.288
MA0142.10.498
MA0143.10.989
MA0144.10.0308
MA0145.10.526
MA0146.10.725
MA0147.10.403
MA0148.10.731
MA0149.10.204
MA0150.11.90623e-24
MA0152.10.796
MA0153.10.00306
MA0154.11.24213e-4
MA0155.10.896
MA0156.13.06626e-9
MA0157.10.995
MA0159.10.0405
MA0160.10.142
MA0162.10.78
MA0163.16.54629e-8
MA0164.10.563
MA0258.10.029
MA0259.10.703



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13533

Novel motifP-value
10.102
100.0273
1000.855
1010.906
1020.972
1030.243
1040.531
1050.125
1065.53974e-4
1070.212
1080.624
1090.382
110.193
1100.197
1110.167
1120.456
1130.474
1140.0383
1150.163
1160.998
1170.0892
1180.259
1190.197
120.272
1200.768
1210.655
1220.671
1230.812
1240.762
1250.296
1260.272
1270.521
1280.0651
1290.415
130.11
1300.439
1310.988
1320.0738
1330.722
1340.593
1350.837
1360.844
1370.0225
1380.435
1390.162
140.52
1400.442
1410.271
1420.158
1430.0321
1440.475
1450.357
1460.839
1470.761
1480.00883
1490.859
150.193
1500.304
1510.674
1520.448
1530.708
1540.747
1550.824
1560.746
1570.647
1580.0502
1590.118
160.374
1600.47
1610.403
1620.222
1630.103
1640.16
1650.174
1660.938
1670.309
1680.07
1690.0348
170.27
180.102
190.608
20.446
200.211
210.788
220.356
230.0332
240.325
250.442
260.0966
270.566
280.336
290.288
30.152
300.457
310.752
320.376
330.236
340.692
350.0989
360.0825
370.0662
380.389
390.845
40.927
400.259
410.0202
420.299
430.0206
440.522
450.673
460.214
470.585
480.557
490.162
50.331
500.922
510.554
520.345
530.621
540.501
550.604
560.727
570.864
580.147
590.214
60.793
600.0452
610.688
620.0877
630.612
640.577
650.224
660.414
670.423
680.5
690.212
70.234
700.0568
710.0296
720.179
730.269
740.0508
750.207
760.166
770.629
780.12
790.689
80.455
800.152
810.278
820.267
830.0191
840.0784
850.0505
860.0471
870.426
880.733
890.233
90.329
900.0907
910.376
920.299
930.581
940.114
950.538
960.377
970.507
980.171
990.0508



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13533


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000335 (LPS treatment sample)
0011108 (human CD14-positive monocytes - treated with lipopolysaccharide sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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