FF:11882-125D1: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13544
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-3
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005810

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13544		CAGE		DRX008158		DRR009030

Accession ID Hg19

Library id		BAM		CTSS
CNhs13544		DRZ000455		DRZ001840

Accession ID Hg38

Library id		BAM		CTSS
CNhs13544		DRZ011805		DRZ013190

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.606
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.151
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.53
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.44
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0854
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0854
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.157
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.651
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0854
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.667
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.401
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.0854
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.441
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.457
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.141
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.793
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.157
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.457
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.147
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.319
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0854
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.00565
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.23
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.882
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.557
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.826
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.629
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.629
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.951
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.557
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.319
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.62
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.402
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.863
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.544
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.773
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.796
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.362
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.837
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.218
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.401
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.606
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.218
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.401
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.272
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.793
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	1.005
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.157
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.218
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.471
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.319
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13544

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	6.60303e-10
MA0003.1	MA0003.1	0.622
MA0004.1	MA0004.1	0.111
MA0006.1	MA0006.1	0.634
MA0007.1	MA0007.1	0.839
MA0009.1	MA0009.1	0.594
MA0014.1	MA0014.1	0.453
MA0017.1	MA0017.1	0.0978
MA0018.2	MA0018.2	0.0378
MA0019.1	MA0019.1	0.95
MA0024.1	MA0024.1	0.00368
MA0025.1	MA0025.1	6.34924e-4
MA0027.1	MA0027.1	0.806
MA0028.1	MA0028.1	0.456
MA0029.1	MA0029.1	0.174
MA0030.1	MA0030.1	0.444
MA0031.1	MA0031.1	0.63
MA0035.2	MA0035.2	0.247
MA0038.1	MA0038.1	0.582
MA0039.2	MA0039.2	0.63
MA0040.1	MA0040.1	0.186
MA0041.1	MA0041.1	0.619
MA0042.1	MA0042.1	0.913
MA0043.1	MA0043.1	3.64922e-8
MA0046.1	MA0046.1	0.029
MA0047.2	MA0047.2	0.777
MA0048.1	MA0048.1	0.733
MA0050.1	MA0050.1	1.71127e-16
MA0051.1	MA0051.1	4.40764e-10
MA0052.1	MA0052.1	0.0144
MA0055.1	MA0055.1	0.633
MA0057.1	MA0057.1	0.575
MA0058.1	MA0058.1	0.0171
MA0059.1	MA0059.1	0.0647
MA0060.1	MA0060.1	1.26747e-6
MA0061.1	MA0061.1	7.29259e-9
MA0062.2	MA0062.2	0.058
MA0065.2	MA0065.2	0.0114
MA0066.1	MA0066.1	0.0307
MA0067.1	MA0067.1	2.29024e-7
MA0068.1	MA0068.1	0.763
MA0069.1	MA0069.1	0.493
MA0070.1	MA0070.1	0.0271
MA0071.1	MA0071.1	0.44
MA0072.1	MA0072.1	0.71
MA0073.1	MA0073.1	0.376
MA0074.1	MA0074.1	0.156
MA0076.1	MA0076.1	0.524
MA0077.1	MA0077.1	0.139
MA0078.1	MA0078.1	0.492
MA0079.2	MA0079.2	0.251
MA0080.2	MA0080.2	1.53982e-12
MA0081.1	MA0081.1	2.81828e-4
MA0083.1	MA0083.1	0.347
MA0084.1	MA0084.1	0.794
MA0087.1	MA0087.1	0.99
MA0088.1	MA0088.1	0.747
MA0090.1	MA0090.1	0.33
MA0091.1	MA0091.1	0.733
MA0092.1	MA0092.1	0.334
MA0093.1	MA0093.1	0.128
MA0099.2	MA0099.2	4.07564e-45
MA0100.1	MA0100.1	0.974
MA0101.1	MA0101.1	2.32834e-8
MA0102.2	MA0102.2	9.63961e-8
MA0103.1	MA0103.1	0.0983
MA0104.2	MA0104.2	0.132
MA0105.1	MA0105.1	1.66105e-12
MA0106.1	MA0106.1	0.773
MA0107.1	MA0107.1	6.87709e-10
MA0108.2	MA0108.2	0.47
MA0111.1	MA0111.1	0.666
MA0112.2	MA0112.2	8.98939e-5
MA0113.1	MA0113.1	0.708
MA0114.1	MA0114.1	0.223
MA0115.1	MA0115.1	0.562
MA0116.1	MA0116.1	4.73235e-4
MA0117.1	MA0117.1	0.0286
MA0119.1	MA0119.1	0.236
MA0122.1	MA0122.1	0.712
MA0124.1	MA0124.1	0.416
MA0125.1	MA0125.1	0.31
MA0131.1	MA0131.1	0.545
MA0135.1	MA0135.1	0.612
MA0136.1	MA0136.1	5.41319e-15
MA0137.2	MA0137.2	1.24682e-13
MA0138.2	MA0138.2	0.293
MA0139.1	MA0139.1	0.964
MA0140.1	MA0140.1	0.242
MA0141.1	MA0141.1	0.14
MA0142.1	MA0142.1	0.8
MA0143.1	MA0143.1	0.989
MA0144.1	MA0144.1	7.55928e-6
MA0145.1	MA0145.1	0.451
MA0146.1	MA0146.1	0.327
MA0147.1	MA0147.1	0.253
MA0148.1	MA0148.1	0.992
MA0149.1	MA0149.1	0.262
MA0150.1	MA0150.1	8.12196e-23
MA0152.1	MA0152.1	0.736
MA0153.1	MA0153.1	0.00696
MA0154.1	MA0154.1	0.00128
MA0155.1	MA0155.1	0.952
MA0156.1	MA0156.1	1.50628e-11
MA0157.1	MA0157.1	0.78
MA0159.1	MA0159.1	0.0228
MA0160.1	MA0160.1	0.0237
MA0162.1	MA0162.1	0.7
MA0163.1	MA0163.1	4.97154e-7
MA0164.1	MA0164.1	0.694
MA0258.1	MA0258.1	0.00894
MA0259.1	MA0259.1	0.876

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13544

Novel motif	Logo	P-value
1	1	0.0925
10	10	0.0203
100	100	0.903
101	101	0.753
102	102	0.96
103	103	0.345
104	104	0.53
105	105	0.152
106	106	0.0016
107	107	0.381
108	108	0.7
109	109	0.225
11	11	0.199
110	110	0.131
111	111	0.073
112	112	0.363
113	113	0.591
114	114	0.0244
115	115	0.197
116	116	0.927
117	117	0.0687
118	118	0.204
119	119	0.181
12	12	0.293
120	120	0.481
121	121	0.408
122	122	0.546
123	123	0.518
124	124	0.868
125	125	0.47
126	126	0.213
127	127	0.42
128	128	0.0609
129	129	0.458
13	13	0.0766
130	130	0.268
131	131	0.988
132	132	0.0496
133	133	0.803
134	134	0.734
135	135	0.522
136	136	0.993
137	137	0.013
138	138	0.306
139	139	0.0861
14	14	0.491
140	140	0.498
141	141	0.26
142	142	0.0663
143	143	0.0323
144	144	0.724
145	145	0.414
146	146	0.737
147	147	0.512
148	148	0.0261
149	149	0.884
15	15	0.161
150	150	0.419
151	151	0.381
152	152	0.292
153	153	0.899
154	154	0.609
155	155	0.816
156	156	0.39
157	157	0.753
158	158	0.0364
159	159	0.168
16	16	0.358
160	160	0.511
161	161	0.527
162	162	0.159
163	163	0.161
164	164	0.15
165	165	0.195
166	166	0.523
167	167	0.156
168	168	0.165
169	169	0.0121
17	17	0.324
18	18	0.187
19	19	0.491
2	2	0.511
20	20	0.243
21	21	0.655
22	22	0.287
23	23	0.0597
24	24	0.293
25	25	0.329
26	26	0.0716
27	27	0.651
28	28	0.448
29	29	0.192
3	3	0.194
30	30	0.509
31	31	0.821
32	32	0.507
33	33	0.232
34	34	0.716
35	35	0.198
36	36	0.0808
37	37	0.0699
38	38	0.443
39	39	0.971
4	4	0.845
40	40	0.206
41	41	0.0121
42	42	0.429
43	43	0.0314
44	44	0.769
45	45	0.87
46	46	0.212
47	47	0.609
48	48	0.535
49	49	0.171
5	5	0.267
50	50	0.891
51	51	0.503
52	52	0.481
53	53	0.605
54	54	0.427
55	55	0.71
56	56	0.764
57	57	0.946
58	58	0.163
59	59	0.375
6	6	0.837
60	60	0.0696
61	61	0.782
62	62	0.0796
63	63	0.647
64	64	0.434
65	65	0.298
66	66	0.373
67	67	0.56
68	68	0.937
69	69	0.452
7	7	0.245
70	70	0.0538
71	71	0.0307
72	72	0.171
73	73	0.168
74	74	0.0875
75	75	0.116
76	76	0.229
77	77	0.697
78	78	0.114
79	79	0.733
8	8	0.504
80	80	0.151
81	81	0.408
82	82	0.29
83	83	0.00571
84	84	0.42
85	85	0.0405
86	86	0.0582
87	87	0.493
88	88	0.587
89	89	0.232
9	9	0.452
90	90	0.101
91	91	0.312
92	92	0.317
93	93	0.244
94	94	0.0739
95	95	0.337
96	96	0.619
97	97	0.714
98	98	0.194
99	99	0.0282

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13544

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011444 CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000631 (trehalose dimycolate (TDM) treatment sample)
0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005810
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008158;DRR009030;DRZ000455;DRZ001840;DRZ011805;DRZ013190
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000631,FF:0011444
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.95!8845.02!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.06!1142.41!IRF8;;chr10:35484053..35484076,+!p1@CREM!2.70!1201.49!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.69!976.05!EGR2;;chr11:47400078..47400106,-!p1@SPI1!2.62!415.48!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.47!291.68!TFEC;;chr12:54778471..54778528,-!p1@ZNF385A!2.29!193.73!ZNF385A;;chr11:64764435..64764449,-!p1@BATF2!2.20!213.06!BATF2;;chr1:158985493..158985535,+!p4@IFI16!2.14!205.68!IFI16;;chr6:106534192..106534224,+!p1@PRDM1!2.07!314.92!PRDM1;;chr11:47399947..47399961,-!p3@SPI1!2.06!112.72!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.05!1245.80!MAFB;;chr21:36260295..36260310,-!p3@RUNX1!2.05!175.49!RUNX1;;chr2:68592394..68592405,+!p2@PLEK!2.04!108.38!PLEK;;chr10:35484090..35484104,+!p6@CREM!2.04!107.94!CREM;;chr16:31885093..31885165,+!p1@ZNF267!2.02!1486.87!ZNF267;;chr19:45971246..45971265,+!p1@FOSB!2.01!1769.87!FOSB;;chr6:36355431..36355466,-!p1@ETV7!2.01!101.43!ETV7;;chr21:34442439..34442455,+!p1@OLIG1!1.98!94.48!OLIG1;;chr10:31288398..31288455,-!p2@ZNF438!1.93!97.30!ZNF438;;chr11:47400062..47400077,-!p2@SPI1!1.93!84.05!SPI1;;chr5:131826457..131826514,-!p1@IRF1!1.91!2956.59!IRF1;;chr17:45810594..45810608,+!p1@TBX21!1.89!76.67!TBX21;;chr21:30671690..30671762,+!p2@BACH1!1.88!241.73!BACH1;;chr10:64018918..64018936,+!p2@ZNF365!1.88!75.36!ZNF365;;chr8:22550982..22550999,-!p1@EGR3!1.83!180.05!EGR3;;chr6:106534230..106534254,+!p2@PRDM1!1.81!155.94!PRDM1;;chr2:231084639..231084654,-!p2@SP110!1.79!99.26!SP110;;chr2:157189180..157189290,-!p1@NR4A2!1.78!294.29!NR4A2;;chr1:158979872..158979898,+!p3@IFI16!1.78!174.40!IFI16;;chr2:145277640..145277771,-!p1@ZEB2!1.77!735.18!ZEB2;;chr11:65430554..65430579,-!p3@RELA!1.76!139.87!RELA;;chr14:75988831..75988847,+!p2@BATF!1.74!53.43!BATF;;chr10:31288370..31288393,-!p3@ZNF438!1.73!52.99!ZNF438;;chr22:38597987..38598021,+!p2@MAFF!1.72!299.72!MAFF;;chr12:72056800..72056834,+!p1@THAP2!1.72!67.76!THAP2;;chr11:615942..615957,-!p1@IRF7!1.71!449.15!IRF7;;chr2:231090471..231090504,+!p2@SP140!1.71!49.74!SP140;;chr7:128577972..128578047,+!p1@IRF5!1.70!76.23!IRF5;;chr2:97202480..97202499,+!p1@ARID5A!1.69!456.31!ARID5A;;chr11:47399996..47400014,-!p4@SPI1!1.68!46.91!SPI1;;chr21:30671235..30671253,+!p1@BACH1!1.66!536.67!BACH1;;chr1:25256756..25256774,-!p1@RUNX3!1.66!82.53!RUNX3;;chr11:47400032..47400043,-!p5@SPI1!1.66!44.31!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.65!1111.14!ATF3;;chr21:36421535..36421610,-!p2@RUNX1!1.64!145.08!RUNX1;;chr3:12329397..12329433,+!p2@PPARG!1.64!95.35!PPARG;;chr2:70142232..70142251,+!p1@MXD1!1.63!224.57!MXD1;;chr19:33793430..33793447,-!p1@CEBPA!1.62!163.33!CEBPA;;chr1:221052733..221052749,+!p2@HLX!1.61!51.26!HLX;;chr12:54778351..54778378,-!p6@ZNF385A!1.61!40.18!ZNF385A;;chr3:12330560..12330579,+!p1@PPARG!1.60!44.74!PPARG;;chr12:72056749..72056767,+!p6@THAP2!1.60!43.00!THAP2;;chr7:50344289..50344323,+!p1@IKZF1!1.60!38.66!IKZF1;;chr10:35484804..35484902,+!p2@CREM!1.59!140.52!CREM;;chr11:65430535..65430549,-!p4@RELA!1.59!44.09!RELA;;chr19:45251395..45251432,+!p8@BCL3!1.59!37.79!BCL3;;chr14:75988771..75988826,+!p1@BATF!1.56!46.70!BATF;;chr9:102584159..102584174,+!p2@NR4A3!1.55!60.81!NR4A3;;chr19:50432132..50432217,+!p2@ATF5!1.55!41.27!ATF5;;chrX:153305787..153305807,-!p3@MECP2!1.55!34.10!MECP2;;chr4:106068026..106068084,+!p1@TET2!1.51!273.22!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.51!191.34!ELF1;;chr12:72056773..72056796,+!p3@THAP2!1.51!40.40!THAP2;;chr21:34398234..34398250,+!p1@OLIG2!1.51!31.06!OLIG2;;chr10:51572408..51572454,+!p3@NCOA4!1.49!168.76!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.49!168.32!ZEB2;;chr16:79634624..79634642,-!p1@MAF!1.49!114.24!MAF;;chr6:126240380..126240430,+!p2@NCOA7!1.49!75.36!NCOA7;;chr17:38497662..38497713,+!p4@RARA!1.48!33.66!RARA;;chr3:187463179..187463201,-!p2@BCL6!1.47!113.81!BCL6;;chr9:110252035..110252057,-!p1@KLF4!1.46!428.30!KLF4;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.36!JARID2;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.80!SPI1;;chr6:106535598..106535637,+!p7@PRDM1!1.45!27.15!PRDM1;;chr12:52445218..52445237,+!p1@NR4A1!1.44!322.31!NR4A1;;chr12:48298765..48298783,-!p2@VDR!1.44!53.86!VDR;;chr21:36260343..36260402,-!p6@RUNX1!1.44!41.70!RUNX1;;chr14:35872453..35872485,-!p2@NFKBIA!1.43!63.20!NFKBIA;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.49!PLAGL1;;chr6:391743..391759,+!p1@IRF4!1.43!26.06!IRF4;;chr8:53373491..53373506,-!p4@ST18!1.39!23.67!ST18;;chr20:48599506..48599526,+!p1@SNAI1!1.38!144.43!SNAI1;;chr12:11802753..11802834,+!p2@ETV6!1.38!110.77!ETV6;;chr22:38598057..38598071,+!p3@MAFF!1.38!52.99!MAFF;;chr13:41635029..41635044,-!p4@ELF1!1.38!47.78!ELF1;;chr11:47399920..47399931,-!p7@SPI1!1.38!23.24!SPI1;;chr14:75745523..75745537,+!p1@FOS!1.37!2604.96!FOS;;chr20:48807351..48807384,+!p1@CEBPB!1.37!2176.23!CEBPB;;chr2:61108695..61108753,+!p1@REL!1.37!151.38!REL;;chr18:3449720..3449749,+!p2@TGIF1!1.37!46.70!TGIF1;;chr6:126240463..126240489,+!p6@NCOA7!1.37!24.98!NCOA7;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!274.09!ZBTB43;;chr3:39195037..39195069,-!p2@CSRNP1!1.35!129.66!CSRNP1;;chr2:191885737..191885750,-!p4@STAT1!1.35!21.28!STAT1;;chrX:129244454..129244488,-!p1@ELF4!1.33!143.78!ELF4;;chr11:615570..615721,-!p2@IRF7!1.33!39.75!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.33!39.31!NFKBID;;chr1:161736038..161736056,+!p4@ATF6!1.32!46.04!ATF6;;chr3:39195139..39195150,-!p3@CSRNP1!1.32!25.19!CSRNP1;;chr2:231090433..231090469,+!p1@SP140!1.32!19.98!SP140;;chr9:102584128..102584144,+!p3@NR4A3!1.31!36.49!NR4A3;;chr5:142782823..142782854,-!p3@NR3C1!1.31!27.58!NR3C1;;chr4:83822199..83822239,+!p2@THAP9!1.31!23.24!THAP9;;chr21:36260325..36260341,-!p14@RUNX1!1.31!19.33!RUNX1;;chr22:38598086..38598105,+!p1@MAFF!1.30!195.69!MAFF;;chr10:51572339..51572376,+!p4@NCOA4!1.30!41.92!NCOA4;;chr6:126240442..126240459,+!p4@NCOA7!1.30!24.11!NCOA7;;chr8:116681123..116681143,-!p4@TRPS1!1.29!35.84!TRPS1;;chr2:231280954..231280965,+!p2@SP100!1.29!33.45!SP100;;chr1:221052776..221052799,+!p1@HLX!1.29!32.80!HLX;;chr2:28618532..28618610,+!p4@FOSL2!1.29!31.49!FOSL2;;chr18:3449618..3449634,+!p13@TGIF1!1.29!23.02!TGIF1;;chr21:30672433..30672464,+!p6@BACH1!1.29!18.68!BACH1;;chr1:158979792..158979814,+!p2@IFI16!1.28!167.24!IFI16;;chr10:104155480..104155534,+!p2@NFKB2!1.28!114.68!NFKB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.28!45.39!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.28!37.14!PCBP1;;chr8:116681150..116681164,-!p5@TRPS1!1.28!34.97!TRPS1;;chr19:54041669..54041697,+!p2@ZNF331!1.28!18.24!ZNF331;;chr9:102584262..102584276,+!p1@NR4A3!1.27!38.66!NR4A3;;chr1:212738742..212738755,+!p2@ATF3!1.27!17.81!ATF3;;chr4:106066712..106066728,+!p8@TET2!1.27!17.81!TET2;;chr3:126191157..126191171,-!p4@ZXDC!1.27!17.59!ZXDC;;chr16:79634595..79634620,-!p2@MAF!1.26!30.84!MAF;;chr12:57914700..57914737,+!p7@MBD6!1.26!17.38!MBD6;;chr2:145271342..145271377,-!p5@ZEB2!1.26!17.38!ZEB2;;chr10:31288329..31288353,-!p7@ZNF438!1.26!17.16!ZNF438;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.72!ZBED1;;chr11:65430038..65430053,-!p12@RELA!1.24!16.29!RELA;;chr3:150126101..150126118,+!p6@TSC22D2!1.23!26.06!TSC22D2;;chr18:3449586..3449617,+!p8@TGIF1!1.23!25.63!TGIF1;;chr4:185395590..185395627,-!p3@IRF2!1.23!19.76!IRF2;;chr14:35873947..35873965,-!p1@NFKBIA!1.22!954.76!NFKBIA;;chr10:35416142..35416169,+!p3@CREM!1.22!41.05!CREM;;chr18:3448455..3448480,+!p5@TGIF1!1.22!28.45!TGIF1;;chr2:231084659..231084721,-!p1@SP110!1.21!348.81!SP110;;chr1:158979851..158979865,+!p5@IFI16!1.21!33.23!IFI16;;chr2:145277882..145277967,-!p3@ZEB2!1.21!26.06!ZEB2;;chr17:38497715..38497734,+!p8@RARA!1.21!15.20!RARA;;chr19:45250948..45250998,+!p3@BCL3!1.20!37.14!BCL3;;chr4:83822294..83822306,+!p8@THAP9!1.19!14.55!THAP9;;chr1:158979922..158979933,+!p13@IFI16!1.19!14.33!IFI16;;chr1:25256439..25256476,-!p3@RUNX3!1.19!14.33!RUNX3;;chr4:103422499..103422632,+!p1@NFKB1!1.18!292.34!NFKB1;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!138.35!NFKBIE;;chr19:47616992..47617011,-!p4@ZC3H4!1.17!29.10!ZC3H4;;chr20:48807456..48807475,+!p3@CEBPB!1.17!26.71!CEBPB;;chr21:30672734..30672748,+!p11@BACH1!1.17!13.90!BACH1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.17!13.68!LRRFIP1;;chrX:129244430..129244442,-!p5@ELF4!1.17!13.68!ELF4;;chr8:116681194..116681214,-!p1@TRPS1!1.16!125.54!TRPS1;;chr7:28725740..28725778,+!p1@CREB5!1.16!120.32!CREB5;;chr16:89787973..89788001,+!p3@ZNF276!1.16!26.06!ZNF276;;chr8:81397846..81397860,+!p3@ZBTB10!1.16!16.72!ZBTB10;;chr2:28615716..28615733,+!p1@FOSL2!1.15!617.47!FOSL2;;chr3:39195075..39195088,-!p1@CSRNP1!1.15!82.10!CSRNP1;;chr10:104154246..104154347,+!p3@NFKB2!1.15!79.93!NFKB2;;chr12:48298785..48298828,-!p1@VDR!1.15!68.85!VDR;;chr2:231084820..231084836,-!p5@SP110!1.15!14.99!SP110;;chr11:65429891..65429915,-!p7@RELA!1.15!13.03!RELA;;chr3:170075436..170075520,+!p1@SKIL!1.14!272.14!SKIL;;chr4:185395633..185395651,-!p2@IRF2!1.14!20.42!IRF2;;chr4:106066730..106066754,+!p6@TET2!1.14!12.81!TET2;;chr14:24630465..24630531,+!p1@IRF9!1.13!478.25!IRF9;;chr21:36260980..36261011,-!p1@RUNX1!1.13!353.37!RUNX1;;chr7:17338266..17338282,+!p1@AHR!1.13!134.01!AHR;;chr9:110250697..110250738,-!p2@KLF4!1.13!14.55!KLF4;;chr13:41593392..41593403,-!p7@ELF1!1.13!12.38!ELF1;;chr2:157199008..157199023,-!p3@NR4A2!1.12!25.85!NR4A2;;chr5:88178983..88179012,-!p1@MEF2C!1.11!92.74!MEF2C;;chr16:3285119..3285133,-!p2@ZNF200!1.11!24.11!ZNF200;;chr2:61108808..61108821,+!p3@REL!1.11!14.99!REL;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.95!ZNF366;;chr10:3827371..3827386,-!p2@KLF6!1.10!98.17!KLF6;;chr8:116681409..116681431,-!p2@TRPS1!1.10!31.71!TRPS1;;chr8:71316428..71316459,-!p2@NCOA2!1.10!19.76!NCOA2;;chr20:48807615..48807644,+!p6@CEBPB!1.10!19.55!CEBPB;;chr2:145275228..145275241,-!p11@ZEB2!1.10!14.12!ZEB2;;chr4:83822246..83822277,+!p5@THAP9!1.10!11.51!THAP9;;chr19:54058073..54058088,+!p1@ZNF331!1.10!11.51!ZNF331;;chr18:3449527..3449582,+!p6@TGIF1!1.09!21.72!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.09!19.76!GATAD2A;;chr6:15246261..15246312,+!p1@JARID2!1.08!267.36!JARID2;;chr9:88969339..88969422,-!p2@ZCCHC6!1.08!86.22!ZCCHC6;;chr7:115670792..115670797,-!p2@TFEC!1.08!11.08!TFEC;;chr9:88969303..88969335,-!p1@ZCCHC6!1.07!100.78!ZCCHC6;;chr16:3285144..3285191,-!p1@ZNF200!1.07!52.78!ZNF200;;chr2:185463247..185463263,+!p1@ZNF804A!1.07!19.11!ZNF804A;;chr14:35872494..35872511,-!p5@NFKBIA!1.07!14.33!NFKBIA;;chr8:81397876..81397898,+!p5@ZBTB10!1.07!12.60!ZBTB10;;chr1:158985553..158985574,+!p14@IFI16!1.07!10.64!IFI16;;chrX:153305741..153305753,-!p4@MECP2!1.07!10.64!MECP2;;chr1:157108130..157108173,-!p1@ETV3!1.06!76.45!ETV3;;chr19:45252008..45252024,+!p2@BCL3!1.06!34.53!BCL3;;chr8:72756063..72756125,-!p1@MSC!1.06!21.50!MSC;;chr4:87857474..87857489,+!p7@AFF1!1.06!18.24!AFF1;;chr8:81397820..81397836,+!p2@ZBTB10!1.06!13.03!ZBTB10;;chr7:150946376..150946389,-!p6@SMARCD3!1.06!10.43!SMARCD3;;chr10:98591637..98591643,+!p8@LCOR!1.06!10.43!LCOR;;chr3:193853927..193853944,+!p1@HES1!1.05!336.64!HES1;;chr18:3449695..3449712,+!p9@TGIF1!1.05!15.64!TGIF1;;chr5:131831436..131831450,-!p5@IRF1!1.05!10.21!IRF1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.04!124.45!ZC3H12A;;chr12:96588219..96588263,+!p2@ELK3!1.04!72.76!ELK3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.04!54.51!LRRFIP1;;chr21:36260463..36260480,-!p9@RUNX1!1.04!13.47!RUNX1;;chr3:107318229..107318239,+!p17@BBX!1.04!9.99!BBX;;chr3:187455529..187455544,-!p5@BCL6!1.04!9.99!BCL6;;chr4:106066776..106066791,+!p9@TET2!1.04!9.99!TET2;;chr10:64576035..64576046,-!p2@EGR2!1.04!9.99!EGR2;;chr12:56415246..56415286,+!p2@IKZF4!1.03!9.77!IKZF4;;chr12:57914286..57914304,-!p1@DDIT3!1.02!345.98!DDIT3;;chr17:38474489..38474548,+!p1@RARA!1.02!305.80!RARA;;chr6:106546808..106546833,+!p3@PRDM1!1.02!11.95!PRDM1;;chr12:56753869..56753930,-!p1@STAT2!1.01!414.83!STAT2;;chr6:12012170..12012245,+!p1@HIVEP1!1.01!46.91!HIVEP1;;chr2:208031943..208031978,-!p5@KLF7!1.01!12.60!KLF7;;chr3:187455486..187455504,-!p6@BCL6!1.01!9.34!BCL6;;chr3:187455680..187455700,-!p4@BCL6!1.01!9.34!BCL6;;chr1:221054922..221054933,+!p16@HLX!1.01!9.12!HLX;;chr2:208394817..208394834,+!p3@CREB1!1.00!37.36!CREB1;;chr18:72922743..72922761,+!p3@TSHZ1!1.00!29.97!TSHZ1;;chr6:15246217..15246228,+!p3@JARID2!1.00!16.29!JARID2;;chr7:106809470..106809481,+!p2@HBP1!1.00!12.60!HBP1;;chr6:106535687..106535706,+!p8@PRDM1!1.00!8.90!PRDM1;;chr7:50343634..50343717,+!p2@IKZF1!1.00!8.90!IKZF1;;chr8:53373515..53373526,-!p8@ST18!1.00!8.90!ST18;;chr3:187455634..187455651,-!p7@BCL6!1.00!8.90!BCL6;;chr19:45257891..45257908,+!p17@BCL3!1.00!8.90!BCL3;;chr1:221054853..221054873,+!p9@HLX!1.00!8.90!HLX;;chr9:4300050..4300118,-!p1@GLIS3!0.99!58.86!GLIS3;;chr18:3449821..3449860,+!p7@TGIF1!0.99!16.07!TGIF1;;chr15:85291372..85291405,+!p3@ZNF592!0.99!12.16!ZNF592;;chr2:192015701..192015743,-!p1@STAT4!0.99!12.16!STAT4;;chr3:187454281..187454300,-!p8@BCL6!0.99!8.69!BCL6;;chr5:172483414..172483425,+!p3@C5orf41!0.99!8.69!CREBRF;;chr20:47894569..47894799,-!p1@ZNFX1!0.98!233.04!ZNFX1;;chr10:104155455..104155479,+!p1@NFKB2!0.98!129.23!NFKB2;;chr20:48807648..48807671,+!p9@CEBPB!0.98!12.60!CEBPB;;chr4:83821967..83821998,+!p3@THAP9!0.98!10.43!THAP9;;chr4:103423079..103423112,+!p4@NFKB1!0.98!8.47!NFKB1;;chr19:12902289..12902307,+!p1@JUNB!0.97!1974.25!JUNB;;chr17:79885537..79885554,-!p2@MAFG!0.97!16.51!MAFG;;chr9:3526360..3526421,-!p5@RFX3!0.97!15.64!RFX3;;chr19:13213662..13213686,-!p1@LYL1!0.97!12.60!LYL1;;chr3:107318157..107318172,+!p6@BBX!0.97!11.95!BBX;;chr4:83822343..83822355,+!p9@THAP9!0.97!8.25!THAP9;;chr19:36389729..36389751,-!p3@NFKBID!0.97!8.25!NFKBID;;chr1:158985723..158985746,+!p20@IFI16!0.97!8.25!IFI16;;chr11:65430617..65430624,-!p8@RELA!0.97!8.25!RELA;;chr2:70142189..70142223,+!p2@MXD1!0.96!59.29!MXD1;;chr6:35310395..35310410,+!p2@PPARD!0.96!32.36!PPARD;;chr17:38498594..38498661,+!p2@RARA!0.96!27.80!RARA;;chr21:40177845..40177863,+!p1@ETS2!0.95!484.11!ETS2;;chr1:158979686..158979745,+!p1@IFI16!0.95!271.05!IFI16;;chr4:140098339..140098392,-!p1@ELF2!0.95!68.20!ELF2;;chr21:40177892..40177903,+!p2@ETS2!0.95!32.58!ETS2;;chr3:5020939..5020952,+!p2@BHLHE40!0.95!25.85!BHLHE40;;chr12:11802932..11802949,+!p3@ETV6!0.95!13.90!ETV6;;chr21:36421518..36421532,-!p11@RUNX1!0.95!7.82!RUNX1;;chr3:5021113..5021180,+!p1@BHLHE40!0.94!562.52!BHLHE40;;chr14:62162258..62162269,+!p2@HIF1A!0.94!76.45!HIF1A;;chr1:935467..935484,-!p1@HES4!0.94!35.18!HES4;;chr7:28725715..28725727,+!p3@CREB5!0.94!9.12!CREB5;;chr8:103667935..103667960,-!p1@KLF10!0.93!348.81!KLF10;;chr7:149470641..149470694,-!p1@ZNF467!0.93!34.97!ZNF467;;chr14:103059006..103059017,+!p2@RCOR1!0.93!12.16!RCOR1;;chr11:65430586..65430593,-!p5@RELA!0.93!8.47!RELA;;chr10:64575812..64575824,-!p4@EGR2!0.93!7.60!EGR2;;chr7:137620684..137620711,-!p4@CREB3L2!0.93!7.60!CREB3L2;;chr3:107318352..107318392,+!p14@BBX!0.93!7.60!BBX;;chr2:178129414..178129517,-!p1@NFE2L2!0.92!298.85!NFE2L2;;chr2:178129358..178129403,-!p5@NFE2L2!0.92!30.84!NFE2L2;;chr9:3525727..3525828,-!p2@RFX3!0.92!19.55!RFX3;;chr1:221053049..221053075,+!p3@HLX!0.92!13.03!HLX;;chr10:104155659..104155676,+!p4@NFKB2!0.92!9.34!NFKB2;;chr2:231280908..231280945,+!p1@SP100!0.91!285.60!SP100;;chr11:65667846..65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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11882-125D1
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor3.CNhs13544.11882-125D1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11882-125D1
 |is_a=EFO:0002091;;FF:0011444
 |is_obsolete=
+|library_id=CNhs13544
+|library_id_phase_based=2:CNhs13544
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11882
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11882
 |name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor3
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13544,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=STAT5{A,B}:6.4778905873;STAT2,4,6:6.18003354626;FOSL2:5.68475478136;NFE2:5.07418563657;NFE2L2:4.92608854988;IRF7:4.81004172826;FOS_FOS{B,L1}_JUN{B,D}:4.73581582326;STAT1,3:4.62069053389;BACH2:4.62043352693;CEBPA,B_DDIT3:4.47472844592;HLF:4.42770105917;IRF1,2:4.19418545682;PAX2:4.02341808358;SREBF1,2:3.93978759112;NFIL3:3.87857229212;SPIB:3.66939531573;NANOG{mouse}:3.46590544287;FOXP3:3.27679368413;EP300:3.18952935985;ETS1,2:3.18640964356;SPI1:3.17019994955;ATF5_CREB3:3.04396449788;ATF4:3.0131838366;ATF6:2.83404035249;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.75049993097;RUNX1..3:2.54821383184;CREB1:2.45593627345;NFKB1_REL_RELA:2.43689819303;DMAP1_NCOR{1,2}_SMARC:2.40266324466;NFE2L1:2.35154590997;JUN:2.34461682581;FOXN1:2.28708612509;HSF1,2:2.14592278594;ATF2:2.01978377796;NR1H4:2.01921598157;TGIF1:1.91632007638;ELF1,2,4:1.88756779092;NFATC1..3:1.83632871687;PAX8:1.69628302426;CDX1,2,4:1.69166229746;MAFB:1.66529876111;ALX4:1.43093483608;HIF1A:1.40958194676;XBP1:1.16504370257;ESRRA:1.00530842989;PPARG:1.00308625958;HOX{A5,B5}:0.896510947241;FOXO1,3,4:0.883670602934;PAX3,7:0.877027328195;HMGA1,2:0.847940571652;SRF:0.801737180141;HMX1:0.708658474131;NR6A1:0.703710720642;RBPJ:0.689122985042;TLX2:0.675675639561;PDX1:0.346761146536;RXRA_VDR{dimer}:0.237615033898;AHR_ARNT_ARNT2:0.215820079799;HBP1_HMGB_SSRP1_UBTF:0.215500583079;MEF2{A,B,C,D}:0.177118641754;FOX{D1,D2}:0.127888329344;RFX2..5_RFXANK_RFXAP:0.109526968289;TBP:0.0862365649116;EN1,2:0.0805365195745;ZBTB16:-0.00196934644258;HES1:-0.0189193879791;GLI1..3:-0.0451781266749;NANOG:-0.0637804648499;HOXA9_MEIS1:-0.0673229839486;VSX1,2:-0.0740021941491;IKZF1:-0.124521553361;PRDM1:-0.155040955455;FOX{F1,F2,J1}:-0.192544245967;PAX1,9:-0.247331391485;MYB:-0.248420100651;SMAD1..7,9:-0.351468541445;BPTF:-0.485483116838;TAL1_TCF{3,4,12}:-0.504015233848;GATA4:-0.541670450417;SPZ1:-0.543914764868;POU2F1..3:-0.556445425214;TFCP2:-0.62041605585;SOX2:-0.637678912146;IKZF2:-0.646286281023;EGR1..3:-0.650360042523;OCT4_SOX2{dimer}:-0.651714146448;RFX1:-0.667530554048;ALX1:-0.701986943786;ESR1:-0.702305754454;RORA:-0.717085254571;FOXM1:-0.720459322967;RXR{A,B,G}:-0.7408856019;MZF1:-0.884877899508;NR3C1:-0.903109268723;ZNF238:-0.911223517263;POU5F1:-0.9220143359;REST:-0.955372809262;TEF:-0.956891224557;PAX6:-1.01268772082;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.08641823173;PRRX1,2:-1.09565679651;HOX{A6,A7,B6,B7}:-1.10321289638;NHLH1,2:-1.1130685305;HNF4A_NR2F1,2:-1.17669786013;DBP:-1.1820967348;TFAP4:-1.30099449882;GATA6:-1.31329431424;PAX4:-1.32652533767;HNF1A:-1.34054429842;PITX1..3:-1.35450354899;NKX3-2:-1.36033088742;SP1:-1.36734696146;MYFfamily:-1.41550026709;FOXA2:-1.49296104248;T:-1.49782392334;NKX2-1,4:-1.53249363383;GZF1:-1.53333921792;NKX2-3_NKX2-5:-1.53583716646;MYBL2:-1.54680819866;MED-1{core}:-1.57461313773;ELK1,4_GABP{A,B1}:-1.64022437706;E2F1..5:-1.65844582205;MAZ:-1.67385863921;FOXD3:-1.68481792687;NKX3-1:-1.69357588298;SOX5:-1.69667639246;MTE{core}:-1.70761806418;PATZ1:-1.71974157644;FOXP1:-1.74753763033;FOXL1:-1.75107963456;BREu{core}:-1.75668355864;ZBTB6:-1.76596853366;ZFP161:-1.78561704767;GTF2A1,2:-1.83213723969;ZEB1:-1.83899788664;PBX1:-1.85057839815;TLX1..3_NFIC{dimer}:-1.864079678;TEAD1:-1.87403757887;NKX6-1,2:-1.88035947205;MTF1:-1.90169372163;TFAP2B:-1.90462713506;MYOD1:-1.91596758743;SOX{8,9,10}:-1.92372476803;NKX2-2,8:-1.93301225368;GTF2I:-1.94026561365;NFIX:-1.9436964971;TFDP1:-1.9467777022;NFY{A,B,C}:-1.96732226117;ZNF384:-1.9741130265;CUX2:-1.99954590224;TP53:-2.00023871472;bHLH_family:-2.0287643705;SNAI1..3:-2.05498146476;GFI1B:-2.09230535503;CRX:-2.1006812634;ZNF148:-2.11465644708;XCPE1{core}:-2.12179443406;RREB1:-2.1708848995;POU1F1:-2.20559867105;FOX{I1,J2}:-2.23430108284;GCM1,2:-2.23772564304;HOX{A4,D4}:-2.27839766419;KLF4:-2.28531811769;ADNP_IRX_SIX_ZHX:-2.36492436375;POU6F1:-2.4415709138;NR5A1,2:-2.44963770794;TFAP2{A,C}:-2.45325138394;ZIC1..3:-2.45648304246;HIC1:-2.50765496035;FOXQ1:-2.51884688272;AIRE:-2.5336462081;EBF1:-2.58618125974;TBX4,5:-2.59811245558;POU3F1..4:-2.6851618924;UFEwm:-2.70009674542;PAX5:-2.7235714827;LMO2:-2.74412163745;SOX17:-2.80132367263;NRF1:-2.81770113123;GFI1:-2.85381813876;YY1:-2.92227237643;CDC5L:-3.03996837192;EVI1:-3.04544475684;ONECUT1,2:-3.05086252764;TOPORS:-3.14312602983;HAND1,2:-3.15728499315;ARID5B:-3.19576223013;AR:-3.29502608571;ZNF423:-3.43113006672;ZNF143:-3.44537929126;LHX3,4:-3.57740578857;LEF1_TCF7_TCF7L1,2:-3.76420964446
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11882-125D1;search_select_hide=table117:FF:11882-125D1
 }}

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FF:11882-125D1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0