FF:11888-125D7: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - treated with Candida, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13494
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-9
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005146

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13494		CAGE		DRX008143		DRR009015

Accession ID Hg19

Library id		BAM		CTSS
CNhs13494		DRZ000440		DRZ001825

Accession ID Hg38

Library id		BAM		CTSS
CNhs13494		DRZ011790		DRZ013175

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.96
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.168
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.569
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.773
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	1.02
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.807
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.482
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.49
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0637
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.704
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.372
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.569
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.405
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.422
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.337
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.372
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.923
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.372
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.006
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.662
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.704
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.952
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.798
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.569
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.582
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.569
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.807
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.616
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.701
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.925
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.372
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.807
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.372
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.569
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.372
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.569
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.569
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.372
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.372
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.372
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.372
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13494

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.08947e-8
MA0003.1	MA0003.1	0.755
MA0004.1	MA0004.1	0.0566
MA0006.1	MA0006.1	0.712
MA0007.1	MA0007.1	0.748
MA0009.1	MA0009.1	0.4
MA0014.1	MA0014.1	0.586
MA0017.1	MA0017.1	0.188
MA0018.2	MA0018.2	0.0297
MA0019.1	MA0019.1	0.857
MA0024.1	MA0024.1	0.00744
MA0025.1	MA0025.1	8.51557e-5
MA0027.1	MA0027.1	0.795
MA0028.1	MA0028.1	0.116
MA0029.1	MA0029.1	0.125
MA0030.1	MA0030.1	0.503
MA0031.1	MA0031.1	0.52
MA0035.2	MA0035.2	0.351
MA0038.1	MA0038.1	0.866
MA0039.2	MA0039.2	0.984
MA0040.1	MA0040.1	0.545
MA0041.1	MA0041.1	0.777
MA0042.1	MA0042.1	0.644
MA0043.1	MA0043.1	2.51655e-8
MA0046.1	MA0046.1	0.00713
MA0047.2	MA0047.2	0.341
MA0048.1	MA0048.1	0.611
MA0050.1	MA0050.1	3.29182e-7
MA0051.1	MA0051.1	0.00623
MA0052.1	MA0052.1	9.27135e-4
MA0055.1	MA0055.1	0.403
MA0057.1	MA0057.1	0.412
MA0058.1	MA0058.1	0.00769
MA0059.1	MA0059.1	0.0328
MA0060.1	MA0060.1	2.55929e-5
MA0061.1	MA0061.1	1.09085e-13
MA0062.2	MA0062.2	0.712
MA0065.2	MA0065.2	0.031
MA0066.1	MA0066.1	0.0256
MA0067.1	MA0067.1	6.78876e-7
MA0068.1	MA0068.1	0.984
MA0069.1	MA0069.1	0.819
MA0070.1	MA0070.1	0.0202
MA0071.1	MA0071.1	0.392
MA0072.1	MA0072.1	0.529
MA0073.1	MA0073.1	0.396
MA0074.1	MA0074.1	0.111
MA0076.1	MA0076.1	0.132
MA0077.1	MA0077.1	0.399
MA0078.1	MA0078.1	0.435
MA0079.2	MA0079.2	0.145
MA0080.2	MA0080.2	2.81737e-11
MA0081.1	MA0081.1	0.0011
MA0083.1	MA0083.1	0.652
MA0084.1	MA0084.1	0.718
MA0087.1	MA0087.1	0.675
MA0088.1	MA0088.1	0.572
MA0090.1	MA0090.1	0.551
MA0091.1	MA0091.1	0.644
MA0092.1	MA0092.1	0.479
MA0093.1	MA0093.1	0.0647
MA0099.2	MA0099.2	2.68876e-43
MA0100.1	MA0100.1	0.863
MA0101.1	MA0101.1	7.29839e-16
MA0102.2	MA0102.2	1.31884e-7
MA0103.1	MA0103.1	0.118
MA0104.2	MA0104.2	0.0714
MA0105.1	MA0105.1	5.71237e-19
MA0106.1	MA0106.1	0.904
MA0107.1	MA0107.1	4.88551e-19
MA0108.2	MA0108.2	0.895
MA0111.1	MA0111.1	0.467
MA0112.2	MA0112.2	1.43369e-4
MA0113.1	MA0113.1	0.998
MA0114.1	MA0114.1	0.252
MA0115.1	MA0115.1	0.692
MA0116.1	MA0116.1	0.00128
MA0117.1	MA0117.1	0.0405
MA0119.1	MA0119.1	0.132
MA0122.1	MA0122.1	0.607
MA0124.1	MA0124.1	0.237
MA0125.1	MA0125.1	0.212
MA0131.1	MA0131.1	0.392
MA0135.1	MA0135.1	0.541
MA0136.1	MA0136.1	5.77732e-13
MA0137.2	MA0137.2	0.278
MA0138.2	MA0138.2	0.404
MA0139.1	MA0139.1	0.871
MA0140.1	MA0140.1	0.541
MA0141.1	MA0141.1	0.133
MA0142.1	MA0142.1	0.661
MA0143.1	MA0143.1	0.925
MA0144.1	MA0144.1	0.135
MA0145.1	MA0145.1	0.552
MA0146.1	MA0146.1	0.568
MA0147.1	MA0147.1	0.138
MA0148.1	MA0148.1	0.771
MA0149.1	MA0149.1	0.146
MA0150.1	MA0150.1	3.23094e-20
MA0152.1	MA0152.1	0.904
MA0153.1	MA0153.1	0.00592
MA0154.1	MA0154.1	2.68983e-4
MA0155.1	MA0155.1	0.882
MA0156.1	MA0156.1	4.30772e-8
MA0157.1	MA0157.1	0.915
MA0159.1	MA0159.1	0.0363
MA0160.1	MA0160.1	0.027
MA0162.1	MA0162.1	0.886
MA0163.1	MA0163.1	1.11757e-7
MA0164.1	MA0164.1	0.675
MA0258.1	MA0258.1	0.0164
MA0259.1	MA0259.1	0.864

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13494

Novel motif	Logo	P-value
1	1	0.117
10	10	0.0241
100	100	0.915
101	101	0.773
102	102	0.971
103	103	0.29
104	104	0.484
105	105	0.0736
106	106	0.00117
107	107	0.28
108	108	0.804
109	109	0.37
11	11	0.214
110	110	0.16
111	111	0.106
112	112	0.38
113	113	0.543
114	114	0.0417
115	115	0.256
116	116	0.959
117	117	0.0735
118	118	0.182
119	119	0.133
12	12	0.284
120	120	0.655
121	121	0.573
122	122	0.509
123	123	0.597
124	124	0.671
125	125	0.411
126	126	0.184
127	127	0.52
128	128	0.045
129	129	0.403
13	13	0.0779
130	130	0.334
131	131	0.951
132	132	0.0442
133	133	0.661
134	134	0.69
135	135	0.96
136	136	0.998
137	137	0.04
138	138	0.387
139	139	0.0581
14	14	0.557
140	140	0.309
141	141	0.328
142	142	0.0247
143	143	0.0243
144	144	0.74
145	145	0.399
146	146	0.876
147	147	0.87
148	148	0.0189
149	149	0.952
15	15	0.183
150	150	0.359
151	151	0.46
152	152	0.398
153	153	0.623
154	154	0.786
155	155	0.893
156	156	0.527
157	157	0.423
158	158	0.0191
159	159	0.191
16	16	0.323
160	160	0.353
161	161	0.488
162	162	0.313
163	163	0.123
164	164	0.137
165	165	0.401
166	166	0.676
167	167	0.197
168	168	0.271
169	169	0.0163
17	17	0.263
18	18	0.118
19	19	0.536
2	2	0.467
20	20	0.211
21	21	0.775
22	22	0.361
23	23	0.0433
24	24	0.435
25	25	0.42
26	26	0.0969
27	27	0.511
28	28	0.42
29	29	0.277
3	3	0.18
30	30	0.545
31	31	0.765
32	32	0.533
33	33	0.222
34	34	0.807
35	35	0.109
36	36	0.0716
37	37	0.0654
38	38	0.346
39	39	0.82
4	4	0.826
40	40	0.16
41	41	0.00995
42	42	0.422
43	43	0.0219
44	44	0.556
45	45	0.807
46	46	0.232
47	47	0.705
48	48	0.599
49	49	0.12
5	5	0.31
50	50	0.968
51	51	0.555
52	52	0.48
53	53	0.665
54	54	0.468
55	55	0.742
56	56	0.704
57	57	0.925
58	58	0.183
59	59	0.245
6	6	0.869
60	60	0.0697
61	61	0.773
62	62	0.101
63	63	0.574
64	64	0.414
65	65	0.218
66	66	0.416
67	67	0.52
68	68	0.663
69	69	0.405
7	7	0.197
70	70	0.0888
71	71	0.0305
72	72	0.227
73	73	0.198
74	74	0.124
75	75	0.122
76	76	0.168
77	77	0.497
78	78	0.12
79	79	0.486
8	8	0.375
80	80	0.186
81	81	0.351
82	82	0.357
83	83	0.00334
84	84	0.134
85	85	0.0519
86	86	0.0558
87	87	0.535
88	88	0.81
89	89	0.274
9	9	0.455
90	90	0.136
91	91	0.306
92	92	0.414
93	93	0.429
94	94	0.101
95	95	0.466
96	96	0.385
97	97	0.52
98	98	0.14
99	99	0.0506

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13494

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011104 human CD14-positive monocytes - treated with Candida sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000635 (Candida treatment sample)
0011104 (human CD14-positive monocytes - treated with Candida sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005146
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008143;DRR009015;DRZ000440;DRZ001825;DRZ011790;DRZ013175
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000635,FF:0011104
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.65!4421.67!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.67!468.58!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.66!456.39!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.54!349.40!TFEC;;chr9:102584159..102584174,+!p2@NR4A3!2.28!327.73!NR4A3;;chr12:72056800..72056834,+!p1@THAP2!2.25!237.00!THAP2;;chr12:54778471..54778528,-!p1@ZNF385A!2.25!178.76!ZNF385A;;chr3:101546827..101546847,+!p2@NFKBIZ!2.24!238.35!NFKBIZ;;chr19:45971246..45971265,+!p1@FOSB!2.20!2727.49!FOSB;;chr6:106534192..106534224,+!p1@PRDM1!2.20!422.53!PRDM1;;chr2:157189180..157189290,-!p1@NR4A2!2.17!724.53!NR4A2;;chr11:47399947..47399961,-!p3@SPI1!2.15!139.49!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.13!314.19!NFKBIA;;chr14:35873947..35873965,-!p1@NFKBIA!2.11!7468.77!NFKBIA;;chr10:64018918..64018936,+!p2@ZNF365!2.06!115.11!ZNF365;;chr3:101568349..101568365,+!p1@NFKBIZ!2.03!5150.27!NFKBIZ;;chr12:52445218..52445237,+!p1@NR4A1!2.03!1258.11!NR4A1;;chr21:34442439..34442455,+!p1@OLIG1!2.03!106.99!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!2.01!1455.83!ZNF267;;chr10:64576105..64576133,-!p1@EGR2!2.01!201.79!EGR2;;chr9:102584262..102584276,+!p1@NR4A3!2.00!211.27!NR4A3;;chr20:39317868..39317884,-!p1@MAFB!1.99!1068.51!MAFB;;chr10:35484053..35484076,+!p1@CREM!1.98!227.52!CREM;;chr11:47400062..47400077,-!p2@SPI1!1.98!94.80!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.96!89.38!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.95!472.64!MXD1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.92!960.17!ZC3H12A;;chr10:31288398..31288455,-!p2@ZNF438!1.92!94.80!ZNF438;;chr2:61108695..61108753,+!p1@REL!1.91!517.33!REL;;chr10:51572408..51572454,+!p3@NCOA4!1.91!440.14!NCOA4;;chr19:36391434..36391450,-!p1@NFKBID!1.91!153.03!NFKBID;;chr2:68592394..68592405,+!p2@PLEK!1.90!78.55!PLEK;;chr8:22550982..22550999,-!p1@EGR3!1.88!203.14!EGR3;;chr8:123793988..123794016,+!p1@ZHX2!1.86!121.88!ZHX2;;chrX:153305787..153305807,-!p3@MECP2!1.86!71.78!MECP2;;chr4:103422499..103422632,+!p1@NFKB1!1.85!1378.64!NFKB1;;chr11:47400032..47400043,-!p5@SPI1!1.85!69.07!SPI1;;chr22:38597987..38598021,+!p2@MAFF!1.80!361.59!MAFF;;chr10:104155659..104155676,+!p4@NFKB2!1.79!74.48!NFKB2;;chr4:83822199..83822239,+!p2@THAP9!1.78!70.42!THAP9;;chr10:104155480..104155534,+!p2@NFKB2!1.77!356.17!NFKB2;;chr2:192015701..192015743,-!p1@STAT4!1.77!78.55!STAT4;;chr20:48599506..48599526,+!p1@SNAI1!1.74!327.73!SNAI1;;chr2:145275162..145275202,-!p2@ZEB2!1.74!303.36!ZEB2;;chr6:106534230..106534254,+!p2@PRDM1!1.74!131.36!PRDM1;;chr1:212782094..212782109,+!p1@ATF3!1.73!1362.39!ATF3;;chr1:161736038..161736056,+!p4@ATF6!1.73!119.18!ATF6;;chr3:150126101..150126118,+!p6@TSC22D2!1.72!82.61!TSC22D2;;chr1:25256756..25256774,-!p1@RUNX3!1.70!89.38!RUNX3;;chr12:72056773..72056796,+!p3@THAP2!1.70!63.65!THAP2;;chr2:145271342..145271377,-!p5@ZEB2!1.70!48.75!ZEB2;;chr9:102584128..102584144,+!p3@NR4A3!1.69!89.38!NR4A3;;chr4:106066712..106066728,+!p8@TET2!1.66!44.69!TET2;;chr12:54778351..54778378,-!p6@ZNF385A!1.66!44.69!ZNF385A;;chr2:68615063..68615089,+!p4@PLEK!1.65!43.34!PLEK;;chr12:72056749..72056767,+!p6@THAP2!1.64!47.40!THAP2;;chr10:31288370..31288393,-!p3@ZNF438!1.63!41.98!ZNF438;;chr8:53373491..53373506,-!p4@ST18!1.63!41.98!ST18;;chr18:77155922..77155939,+!p1@NFATC1!1.62!108.34!NFATC1;;chr14:35872962..35873025,-!p3@NFKBIA!1.62!100.22!NFKBIA;;chr19:54058073..54058088,+!p1@ZNF331!1.61!39.27!ZNF331;;chr2:145277640..145277771,-!p1@ZEB2!1.60!491.60!ZEB2;;chr21:40177845..40177863,+!p1@ETS2!1.59!2104.53!ETS2;;chr19:54041669..54041697,+!p2@ZNF331!1.59!37.92!ZNF331;;chr21:30671235..30671253,+!p1@BACH1!1.58!444.20!BACH1;;chr3:39195037..39195069,-!p2@CSRNP1!1.58!219.39!CSRNP1;;chr7:106809470..106809481,+!p2@HBP1!1.58!51.46!HBP1;;chr10:35484090..35484104,+!p6@CREM!1.57!36.57!CREM;;chr17:38497662..38497713,+!p4@RARA!1.56!40.63!RARA;;chr4:106068026..106068084,+!p1@TET2!1.54!289.81!TET2;;chr10:104154246..104154347,+!p3@NFKB2!1.54!196.37!NFKB2;;chr6:12012249..12012266,+!p5@HIVEP1!1.54!56.88!HIVEP1;;chr5:142782823..142782854,-!p3@NR3C1!1.54!47.40!NR3C1;;chr8:81397820..81397836,+!p2@ZBTB10!1.54!41.98!ZBTB10;;chr4:106066776..106066791,+!p9@TET2!1.54!33.86!TET2;;chr9:110252035..110252057,-!p1@KLF4!1.53!502.43!KLF4;;chr10:51572339..51572376,+!p4@NCOA4!1.53!71.78!NCOA4;;chr3:12330560..12330579,+!p1@PPARG!1.53!37.92!PPARG;;chr19:36389729..36389751,-!p3@NFKBID!1.53!32.50!NFKBID;;chr2:28615716..28615733,+!p1@FOSL2!1.52!1427.40!FOSL2;;chr21:30671690..30671762,+!p2@BACH1!1.50!100.22!BACH1;;chr9:129567282..129567353,+!p1@ZBTB43!1.49!371.07!ZBTB43;;chr2:61108808..61108821,+!p3@REL!1.49!37.92!REL;;chr2:68615031..68615055,+!p3@PLEK!1.49!29.79!PLEK;;chr4:103423079..103423112,+!p4@NFKB1!1.49!29.79!NFKB1;;chr6:391743..391759,+!p1@IRF4!1.49!29.79!IRF4;;chr19:36389839..36389857,-!p4@NFKBID!1.49!29.79!NFKBID;;chr6:12012170..12012245,+!p1@HIVEP1!1.48!140.84!HIVEP1;;chr4:83821967..83821998,+!p3@THAP9!1.48!35.21!THAP9;;chr4:106066730..106066754,+!p6@TET2!1.47!28.44!TET2;;chr9:102584278..102584285,+!p5@NR4A3!1.47!28.44!NR4A3;;chr14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ZNFX1!0.63!12.19!ZNFX1;;chr21:44394742..44394756,+!p2@PKNOX1!0.63!8.13!PKNOX1;;chr5:137800878..137800898,+!p6@EGR1!0.63!4.06!EGR1;;chr6:45390599..45390662,+!p11@RUNX2!0.63!4.06!RUNX2;;chr10:3818891..3818895,-!p6@KLF6!0.63!4.06!KLF6;;chr6:35310312..35310359,+!p1@PPARD!0.62!33.86!PPARD;;chr19:21950362..21950388,-!p1@ZNF100!0.62!33.86!ZNF100;;chr5:142784003..142784065,-!p2@NR3C1!0.62!31.15!NR3C1;;chr7:44925044..44925156,-!p1@PURB!0.62!29.79!PURB;;chr5:172483347..172483407,+!p1@C5orf41!0.62!28.44!CREBRF;;chr9:4300050..4300118,-!p1@GLIS3!0.62!24.38!GLIS3;;chr19:12175535..12175554,+!p1@ZNF844!0.62!20.31!ZNF844;;chr6:41040923..41040952,+!p2@NFYA!0.62!9.48!NFYA;;chr5:88179230..88179270,-!p4@MEF2C!0.62!6.77!MEF2C;;chr2:208030886..208030917,-!p4@KLF7!0.62!6.77!KLF7;;chr14:74353454..74353469,+!p4@ZNF410!0.62!6.77!ZNF410;;chr22:38598042..38598052,+!p4@MAFF!0.62!5.42!MAFF;;chr15:31619407..31619419,+!p9@KLF13!0.62!4.06!KLF13;;chr1:6684918..6684936,+!p2@THAP3!0.62!4.06!THAP3;;chr22:29196511..29196541,-!p1@XBP1!0.61!417.11!XBP1;;chr2:208031542..208031595,-!p2@KLF7!0.61!25.73!KLF7;;chr3:23986824..23986848,+!p2@NR1D2!0.61!20.31!NR1D2;;chr19:58694421..58694485,+!p1@ZNF274!0.61!18.96!ZNF274;;chr19:19496577..19496619,+!p5@GATAD2A!0.61!12.19!GATAD2A;;chr9:128509663..128509715,+!p1@PBX3!0.61!12.19!PBX3;;chr19:21203481..21203504,+!p2@ZNF430!0.61!8.13!ZNF430;;chr16:69600209..69600234,+!p4@NFAT5!0.61!4.06!NFAT5;;chr20:30795511..30795562,-!p1@PLAGL2!0.60!65.00!PLAGL2;;chr2:174828545..174828644,-!p1@SP3!0.60!55.52!SP3;;chr7:77428066..77428132,+!p2@PHTF2!0.60!23.02!PHTF2;;chr6:20403727..20403769,+!p4@E2F3!0.60!8.13!E2F3;;chr3:71630690..71630750,-!p11@FOXP1!0.60!5.42!FOXP1;;chr1:8484007..8484061,-!p13@RERE!0.60!4.06!RERE;;chr19:12163769..12163798,-!p1@ZNF878!0.60!4.06!ZNF878;;chr22:29196547..29196563,-!p2@XBP1!0.59!131.36!XBP1;;chr9:137218281..137218340,+!p1@RXRA!0.59!101.57!RXRA;;chr2:242576431..242576458,-!p3@THAP4!0.59!8.13!THAP4;;chr13:41635104..41635124,-!p6@ELF1!0.59!5.42!ELF1;;chr1:45805788..45805801,+!p6@TOE1!0.59!4.06!TOE1;;chr4:81118647..81118666,+!p1@PRDM8!0.59!4.06!PRDM8;;chr15:100106155..100106243,+!p1@MEF2A!0.58!92.09!MEF2A;;chr4:26322616..26322652,+!p1@RBPJ!0.58!74.48!RBPJ;;chr1:235491462..235491510,-!p1@ARID4B!0.58!62.30!ARID4B;;chr5:142783175..142783297,-!p1@NR3C1!0.58!47.40!NR3C1;;chr19:21203451..21203475,+!p1@ZNF430!0.58!35.21!ZNF430;;chr6:43138999..43139017,+!p2@SRF!0.58!20.31!SRF;;chr18:72922743..72922761,+!p3@TSHZ1!0.58!10.83!TSHZ1;;chr1:40627028..40627037,+!p2@RLF!0.58!4.06!RLF;;chr21:36260463..36260480,-!p9@RUNX1!0.58!4.06!RUNX1;;chr14:21566540..21566580,-!p2@ZNF219!0.58!4.06!ZNF219;;chr2:192015750..192015793,-!p2@STAT4!0.58!4.06!STAT4;;chr3:170075103..170075114,+!p5@SKIL!0.58!4.06!SKIL;;chr8:116681221..116681236,-!p3@TRPS1!0.57!9.48!TRPS1;;chr16:89787937..89787971,+!p1@ZNF276!0.57!8.13!ZNF276;;chrX:129244655..129244697,-!p4@ELF4!0.57!5.42!ELF4;;chr3:101395919..101395930,-!p4@ZBTB11!0.57!4.06!ZBTB11;;chr3:170075124..170075136,+!p4@SKIL!0.57!4.06!SKIL;;chr10:35415951..35415975,+!p8@CREM!0.57!4.06!CREM;;chr12:10865870..10865888,-!p6@CSDA!0.57!4.06!CSDA;;chr10:35416172..35416184,+!p13@CREM!0.57!2.71!CREM;;chr10:3824125..3824146,-!p12@KLF6!0.57!2.71!KLF6;;chr10:3824206..3824226,-!p10@KLF6!0.57!2.71!KLF6;;chr10:3824309..3824321,-!p15@KLF6!0.57!2.71!KLF6;;chr10:38299441..38299450,+!p3@ZNF33A!0.57!2.71!ZNF33A;;chr10:51575814..51575835,+!p8@NCOA4!0.57!2.71!NCOA4;;chr10:60144911..60144939,+!p2@TFAM!0.57!2.71!TFAM;;chr11:34642612..34642646,+!p1@EHF!0.57!2.71!EHF;;chr11:47237987..47237998,+!p5@DDB2!0.57!2.71!DDB2;;chr12:11802957..11802964,+!p8@ETV6!0.57!2.71!ETV6;;chr12:52430849..52430860,+!p23@NR4A1!0.57!2.71!NR4A1;;chr12:52449834..52449859,+!p16@NR4A1!0.57!2.71!NR4A1;;chr12:52450298..52450331,+!p11@NR4A1!0.57!2.71!NR4A1;;chr12:57911081..57911085,-!p2@DDIT3!0.57!2.71!DDIT3;;chr12:57917037..57917052,+!p9@MBD6!0.57!2.71!MBD6;;chr12:72056897..72056908,+!p12@THAP2!0.57!2.71!THAP2;;chr13:41635806..41635828,-!p14@ELF1!0.57!2.71!ELF1;;chr14:62214151..62214164,+!p11@HIF1A!0.57!2.71!HIF1A;;chrX:70712265..70712303,+!p4@TAF1!0.57!2.71!TAF1;;chrX:153305763..153305772,-!p8@MECP2!0.57!2.71!MECP2;;chr19:45974438..45974449,+!p26@FOSB!0.57!2.71!FOSB;;chr19:45977697..45977713,+!p4@FOSB!0.57!2.71!FOSB;;chr19:54041508..54041527,+!p8@ZNF331!0.57!2.71!ZNF331;;chr1:157108728..157108744,-!p5@ETV3!0.57!2.71!ETV3;;chr1:158985536..158985545,+!p18@IFI16!0.57!2.71!IFI16;;chr1:158985553..158985574,+!p14@IFI16!0.57!2.71!IFI16;;chr1:212873061..212873080,-!p4@BATF3!0.57!2.71!BATF3;;chr1:38324636..38324647,-!p3@MTF1!0.57!2.71!MTF1;;chr1:59250262..59250296,-!p5@JUN!0.57!2.71!JUN;;chr1:935277..935309,-!p6@HES4!0.57!2.71!HES4;;chr20:56195525..56195556,-!p2@ZBP1!0.57!2.71!ZBP1;;chr21:30672681..30672700,+!p19@BACH1!0.57!2.71!BACH1;;chr21:36421147..36421193,-!p10@RUNX1!0.57!2.71!RUNX1;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.71!NR3C1;;chr5:172483414..172483425,+!p3@C5orf41!0.57!2.71!CREBRF;;chr5:71803177..71803255,-!p1@ZNF366!0.57!2.71!ZNF366;;chr5:88120151.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11888-125D7
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11888-125D7
 |is_a=EFO:0002091;;FF:0011104
 |is_obsolete=
+|library_id=CNhs13494
+|library_id_phase_based=2:CNhs13494
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11888
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11888
 |name=CD14+ monocytes - treated with Candida, donor3
 |namespace=
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13494,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 58: / Line 79: @@
 |rna_weight_ug=2.996145
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=FOSL2:6.31595718448;FOS_FOS{B,L1}_JUN{B,D}:6.10896247772;BACH2:6.02318977113;NFE2:5.84492777892;HLF:5.5643963794;PAX2:5.07098160214;CEBPA,B_DDIT3:5.0639503644;NFE2L2:4.99194024856;NFIL3:4.82082326154;SREBF1,2:4.47961455422;NFKB1_REL_RELA:4.34629019534;ATF5_CREB3:3.98839479668;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.98000834337;HSF1,2:3.87304105524;FOXP3:3.60261272661;SPIB:3.50383265647;PAX8:3.20271837191;SPI1:3.17643291111;ATF4:3.1599927733;NFATC1..3:3.14325204867;CREB1:3.11632015755;NFE2L1:3.06388707367;ETS1,2:3.05167478079;ATF6:3.01120285195;JUN:2.91891158184;MAFB:2.81003731835;NANOG{mouse}:2.78669578736;NR1H4:2.66574664576;ATF2:2.53980494107;DMAP1_NCOR{1,2}_SMARC:2.50306136546;PAX3,7:2.43808647378;FOXN1:2.37144471687;RUNX1..3:2.35248848376;IRF1,2:2.18195416738;HOX{A5,B5}:2.17282933242;IRF7:2.12514745127;XBP1:2.06668022439;CDX1,2,4:1.796101295;TGIF1:1.69800023826;HIF1A:1.6396329802;STAT5{A,B}:1.61006715004;STAT2,4,6:1.54539589358;PAX1,9:1.54213076186;PDX1:1.41465549216;IKZF1:1.34330332964;RXRA_VDR{dimer}:1.29604164629;FOXO1,3,4:1.1169269881;VSX1,2:1.089433602;EP300:1.02301435098;HMX1:0.933996693609;POU2F1..3:0.898099272995;PPARG:0.837997297582;ELF1,2,4:0.828232816326;HMGA1,2:0.81527397801;HOXA9_MEIS1:0.773972388201;TBP:0.692620161331;PAX4:0.669854193181;ALX4:0.608221608174;MEF2{A,B,C,D}:0.597965838242;SRF:0.569918588573;RORA:0.506254751614;NANOG:0.29943536579;PRDM1:0.277994709703;HES1:0.208914161045;EN1,2:0.154247923052;NR3C1:0.101694497863;GLI1..3:0.0906466169782;BPTF:0.0709950050323;RBPJ:0.0163415312018;TEF:-0.0436111625207;RFX2..5_RFXANK_RFXAP:-0.163770047795;OCT4_SOX2{dimer}:-0.188709957078;FOX{D1,D2}:-0.316897919375;ESR1:-0.361255954047;AHR_ARNT_ARNT2:-0.414220969339;ZBTB16:-0.419946215024;EGR1..3:-0.484531234028;FOXM1:-0.504926992457;NFIX:-0.530403951414;POU3F1..4:-0.535876691423;IKZF2:-0.544553769995;FOXL1:-0.580820189484;HBP1_HMGB_SSRP1_UBTF:-0.624380149841;NKX2-1,4:-0.637642202332;ESRRA:-0.658740239566;GATA4:-0.746084893097;SOX2:-0.787801129862;MZF1:-0.796166130061;MYB:-0.804572650117;POU5F1:-0.814618370555;PAX6:-0.825742162684;SMAD1..7,9:-0.844783999934;TFCP2:-0.845186757446;NR6A1:-0.851108901934;STAT1,3:-1.00031255234;NKX3-1:-1.01910645381;CRX:-1.02723623146;ZNF238:-1.03965888295;DBP:-1.04005758047;TLX2:-1.05402893403;SOX5:-1.07309492321;RFX1:-1.1012467592;NHLH1,2:-1.1234644177;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18995985531;REST:-1.19048405946;TAL1_TCF{3,4,12}:-1.31439260062;POU6F1:-1.33294000779;RXR{A,B,G}:-1.38733621518;PRRX1,2:-1.4003697457;SOX{8,9,10}:-1.41169437802;HNF1A:-1.43195015195;HNF4A_NR2F1,2:-1.4470847299;GATA6:-1.4913451286;BREu{core}:-1.49431336469;FOXP1:-1.49563931291;PITX1..3:-1.52029916712;CDC5L:-1.5555062232;CUX2:-1.5577396842;SPZ1:-1.56888210792;SP1:-1.57184505631;HOX{A4,D4}:-1.62183887162;T:-1.63485126939;ALX1:-1.66863269872;FOX{F1,F2,J1}:-1.67256441686;MYFfamily:-1.68341872493;TFAP4:-1.7077858474;TBX4,5:-1.71013924034;MED-1{core}:-1.72082495324;NKX2-3_NKX2-5:-1.72799293284;E2F1..5:-1.75444122886;MTE{core}:-1.76441518827;ZNF384:-1.77305286554;GZF1:-1.7979842874;GTF2A1,2:-1.84007626909;TP53:-1.84482593004;MYBL2:-1.9070436449;TLX1..3_NFIC{dimer}:-1.92503743008;FOXA2:-1.93476420575;MTF1:-1.96033025348;TEAD1:-1.97753740219;bHLH_family:-1.98571080488;FOXD3:-1.99234581375;ZIC1..3:-2.00122834845;NKX6-1,2:-2.00890262657;GTF2I:-2.0187403621;FOXQ1:-2.02033810836;TFAP2B:-2.0333946368;ZFP161:-2.05205262621;PATZ1:-2.05408228003;ZNF148:-2.06402090333;NFY{A,B,C}:-2.08108235831;EBF1:-2.09461771479;ZEB1:-2.13197377306;MAZ:-2.14305893755;ZBTB6:-2.19730646595;NKX3-2:-2.2175456269;TFDP1:-2.23696472772;PBX1:-2.27126579018;GCM1,2:-2.27314068073;SNAI1..3:-2.32333178827;ONECUT1,2:-2.38319454965;GFI1B:-2.4315709113;MYOD1:-2.48727324344;ELK1,4_GABP{A,B1}:-2.52888152204;RREB1:-2.5844436487;ADNP_IRX_SIX_ZHX:-2.59043954251;NR5A1,2:-2.60622630074;HIC1:-2.66146620184;HOX{A6,A7,B6,B7}:-2.6949754992;SOX17:-2.69682742951;TFAP2{A,C}:-2.74669302204;FOX{I1,J2}:-2.81683525814;XCPE1{core}:-2.82033421734;KLF4:-2.88974239216;POU1F1:-2.91413130715;UFEwm:-2.91463384516;AR:-2.99687018771;ARID5B:-3.07264647983;GFI1:-3.12208725994;EVI1:-3.22038110747;LHX3,4:-3.36534494169;LMO2:-3.37149077251;NRF1:-3.40509264099;PAX5:-3.43869022604;AIRE:-3.51334900148;NKX2-2,8:-3.65237039104;ZNF423:-3.71325992846;YY1:-3.77665050414;LEF1_TCF7_TCF7L1,2:-3.80208064774;ZNF143:-4.21016600477;HAND1,2:-4.3148032899;TOPORS:-4.87485565461
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11888-125D7;search_select_hide=table117:FF:11888-125D7
 }}

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FF:11888-125D7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0