FF:11903-125F4: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	migratory langerhans cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13547
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	NA
age	NA
cell type	langerhans cell
cell line	NA
company	NA
collaboration	Teunis Geijtenbeek
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	LC-C
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004873

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13547		CAGE		DRX008570		DRR009442

Accession ID Hg19

Library id		BAM		CTSS
CNhs13547		DRZ000867		DRZ002252

Accession ID Hg38

Library id		BAM		CTSS
CNhs13547		DRZ012217		DRZ013602

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.00181
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.27
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0272
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00434
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.0592
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0217
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.196
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0729
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	1.047
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.139
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.172
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.35
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.231
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.663
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0202
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0658
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.522
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0281
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.046
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.416
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0658
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.144
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0.982
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0.0658
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13547

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00143
MA0003.1	MA0003.1	0.782
MA0004.1	MA0004.1	0.356
MA0006.1	MA0006.1	0.937
MA0007.1	MA0007.1	0.784
MA0009.1	MA0009.1	0.167
MA0014.1	MA0014.1	0.122
MA0017.1	MA0017.1	0.00136
MA0018.2	MA0018.2	0.433
MA0019.1	MA0019.1	0.738
MA0024.1	MA0024.1	0.0614
MA0025.1	MA0025.1	0.165
MA0027.1	MA0027.1	0.997
MA0028.1	MA0028.1	0.0441
MA0029.1	MA0029.1	0.718
MA0030.1	MA0030.1	0.613
MA0031.1	MA0031.1	0.86
MA0035.2	MA0035.2	0.643
MA0038.1	MA0038.1	0.19
MA0039.2	MA0039.2	0.0247
MA0040.1	MA0040.1	0.395
MA0041.1	MA0041.1	0.27
MA0042.1	MA0042.1	0.531
MA0043.1	MA0043.1	0.341
MA0046.1	MA0046.1	0.748
MA0047.2	MA0047.2	0.403
MA0048.1	MA0048.1	0.603
MA0050.1	MA0050.1	1.15165e-4
MA0051.1	MA0051.1	0.00798
MA0052.1	MA0052.1	0.11
MA0055.1	MA0055.1	0.462
MA0057.1	MA0057.1	0.75
MA0058.1	MA0058.1	0.442
MA0059.1	MA0059.1	0.702
MA0060.1	MA0060.1	0.117
MA0061.1	MA0061.1	3.00359e-15
MA0062.2	MA0062.2	1.59777e-5
MA0065.2	MA0065.2	0.00387
MA0066.1	MA0066.1	0.964
MA0067.1	MA0067.1	0.011
MA0068.1	MA0068.1	0.0549
MA0069.1	MA0069.1	0.831
MA0070.1	MA0070.1	0.351
MA0071.1	MA0071.1	0.0571
MA0072.1	MA0072.1	0.378
MA0073.1	MA0073.1	0.86
MA0074.1	MA0074.1	0.476
MA0076.1	MA0076.1	0.0935
MA0077.1	MA0077.1	0.653
MA0078.1	MA0078.1	0.929
MA0079.2	MA0079.2	0.997
MA0080.2	MA0080.2	2.95731e-9
MA0081.1	MA0081.1	0.0264
MA0083.1	MA0083.1	0.0628
MA0084.1	MA0084.1	0.166
MA0087.1	MA0087.1	0.254
MA0088.1	MA0088.1	0.0849
MA0090.1	MA0090.1	0.00702
MA0091.1	MA0091.1	0.832
MA0092.1	MA0092.1	0.941
MA0093.1	MA0093.1	0.329
MA0099.2	MA0099.2	0.598
MA0100.1	MA0100.1	0.845
MA0101.1	MA0101.1	6.31389e-13
MA0102.2	MA0102.2	0.69
MA0103.1	MA0103.1	0.0775
MA0104.2	MA0104.2	0.549
MA0105.1	MA0105.1	8.14384e-15
MA0106.1	MA0106.1	0.875
MA0107.1	MA0107.1	3.80737e-17
MA0108.2	MA0108.2	5.45043e-6
MA0111.1	MA0111.1	0.132
MA0112.2	MA0112.2	0.00292
MA0113.1	MA0113.1	0.634
MA0114.1	MA0114.1	0.00546
MA0115.1	MA0115.1	0.118
MA0116.1	MA0116.1	7.63143e-4
MA0117.1	MA0117.1	0.6
MA0119.1	MA0119.1	0.732
MA0122.1	MA0122.1	0.322
MA0124.1	MA0124.1	0.724
MA0125.1	MA0125.1	0.807
MA0131.1	MA0131.1	0.502
MA0135.1	MA0135.1	0.38
MA0136.1	MA0136.1	2.29479e-6
MA0137.2	MA0137.2	0.205
MA0138.2	MA0138.2	0.242
MA0139.1	MA0139.1	0.212
MA0140.1	MA0140.1	0.7
MA0141.1	MA0141.1	0.00596
MA0142.1	MA0142.1	0.648
MA0143.1	MA0143.1	0.488
MA0144.1	MA0144.1	0.806
MA0145.1	MA0145.1	0.176
MA0146.1	MA0146.1	0.189
MA0147.1	MA0147.1	0.61
MA0148.1	MA0148.1	0.492
MA0149.1	MA0149.1	0.17
MA0150.1	MA0150.1	0.00984
MA0152.1	MA0152.1	0.0775
MA0153.1	MA0153.1	0.0239
MA0154.1	MA0154.1	2.62371e-4
MA0155.1	MA0155.1	0.19
MA0156.1	MA0156.1	0.00742
MA0157.1	MA0157.1	0.44
MA0159.1	MA0159.1	0.0247
MA0160.1	MA0160.1	0.00114
MA0162.1	MA0162.1	0.567
MA0163.1	MA0163.1	3.88453e-4
MA0164.1	MA0164.1	0.619
MA0258.1	MA0258.1	0.0213
MA0259.1	MA0259.1	0.786

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13547

Novel motif	Logo	P-value
1	1	0.0583
10	10	0.0366
100	100	0.841
101	101	0.174
102	102	0.375
103	103	0.0198
104	104	0.329
105	105	0.121
106	106	0.0703
107	107	0.563
108	108	0.843
109	109	0.0425
11	11	0.271
110	110	0.366
111	111	0.0419
112	112	0.0228
113	113	0.877
114	114	0.00674
115	115	0.0255
116	116	0.77
117	117	0.0184
118	118	0.16
119	119	0.0272
12	12	0.662
120	120	0.694
121	121	0.825
122	122	0.789
123	123	0.79
124	124	0.172
125	125	0.94
126	126	0.0252
127	127	0.15
128	128	0.0238
129	129	0.237
13	13	0.0384
130	130	0.74
131	131	0.865
132	132	0.497
133	133	0.975
134	134	0.831
135	135	0.422
136	136	0.336
137	137	0.0359
138	138	0.744
139	139	0.115
14	14	0.318
140	140	0.0238
141	141	0.889
142	142	0.339
143	143	0.332
144	144	0.718
145	145	0.587
146	146	0.728
147	147	0.208
148	148	0.0609
149	149	0.457
15	15	0.0581
150	150	0.501
151	151	0.463
152	152	0.643
153	153	0.841
154	154	0.62
155	155	0.023
156	156	0.591
157	157	0.399
158	158	0.152
159	159	0.709
16	16	0.309
160	160	0.839
161	161	0.13
162	162	0.302
163	163	0.635
164	164	0.379
165	165	0.128
166	166	0.957
167	167	0.686
168	168	0.532
169	169	0.145
17	17	0.782
18	18	0.669
19	19	0.856
2	2	0.957
20	20	0.178
21	21	0.266
22	22	0.686
23	23	0.341
24	24	0.864
25	25	0.225
26	26	0.449
27	27	0.765
28	28	0.335
29	29	0.0662
3	3	0.0806
30	30	0.671
31	31	0.707
32	32	0.312
33	33	0.186
34	34	0.864
35	35	0.378
36	36	0.057
37	37	0.0931
38	38	0.279
39	39	0.989
4	4	0.357
40	40	0.0584
41	41	0.268
42	42	0.188
43	43	0.111
44	44	0.0241
45	45	0.886
46	46	0.18
47	47	0.178
48	48	0.251
49	49	0.0708
5	5	0.478
50	50	0.984
51	51	0.328
52	52	0.137
53	53	0.484
54	54	0.393
55	55	0.651
56	56	0.754
57	57	0.245
58	58	0.0528
59	59	0.368
6	6	0.984
60	60	0.0555
61	61	0.264
62	62	0.029
63	63	0.49
64	64	0.341
65	65	0.322
66	66	0.443
67	67	0.224
68	68	0.586
69	69	0.374
7	7	0.0864
70	70	0.0885
71	71	0.147
72	72	0.179
73	73	0.546
74	74	0.692
75	75	0.111
76	76	0.278
77	77	0.964
78	78	0.088
79	79	0.809
8	8	0.709
80	80	0.806
81	81	0.517
82	82	0.275
83	83	0.419
84	84	0.174
85	85	0.401
86	86	0.44
87	87	0.128
88	88	0.232
89	89	0.41
9	9	0.651
90	90	0.00795
91	91	0.821
92	92	0.554
93	93	0.482
94	94	0.0416
95	95	0.0226
96	96	0.0322
97	97	0.902
98	98	0.0919
99	99	0.772

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13547

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011136 human migratory langerhans cells sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011136 (human migratory langerhans cells sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004873
+|accession_numbers=CAGE;DRX008570;DRR009442;DRZ000867;DRZ002252;DRZ012217;DRZ013602
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:391743..391759,+!p1@IRF4!3.00!987.93!IRF4;;chr11:47400078..47400106,-!p1@SPI1!2.28!190.55!SPI1;;chr20:20348740..20348757,+!p1@INSM1!2.06!114.17!INSM1;;chr2:68592406..68592424,+!p1@PLEK!1.96!90.12!PLEK;;chr1:25291475..25291511,-!p2@RUNX3!1.92!82.60!RUNX3;;chr4:185395590..185395627,-!p3@IRF2!1.86!88.33!IRF2;;chr9:102584262..102584276,+!p1@NR4A3!1.77!125.29!NR4A3;;chr9:102584159..102584174,+!p2@NR4A3!1.76!98.63!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!1.73!98.63!NR4A3;;chr2:61108695..61108753,+!p1@REL!1.71!330.40!REL;;chr1:157108746..157108762,-!p4@ETV3!1.68!46.62!ETV3;;chr7:50344289..50344323,+!p1@IKZF1!1.66!44.82!IKZF1;;chr1:157108130..157108173,-!p1@ETV3!1.63!287.71!ETV3;;chr1:25256756..25256774,-!p1@RUNX3!1.62!74.26!RUNX3;;chr7:50344251..50344288,+!p3@IKZF1!1.55!34.84!IKZF1;;chr19:45252008..45252024,+!p2@BCL3!1.52!101.74!BCL3;;chr2:8822176..8822196,+!p1@ID2!1.51!4132.15!ID2;;chr19:50922187..50922204,+!p1@SPIB!1.48!28.95!SPIB;;chr2:61108808..61108821,+!p3@REL!1.47!35.66!REL;;chr11:47400062..47400077,-!p2@SPI1!1.44!26.33!SPI1;;chr1:151319654..151319698,-!p2@RFX5!1.42!53.65!RFX5;;chr5:71803177..71803255,-!p1@ZNF366!1.40!24.04!ZNF366;;chr15:90544532..90544563,+!p1@ZNF710!1.38!45.31!ZNF710;;chr10:104155480..104155534,+!p2@NFKB2!1.37!142.30!NFKB2;;chr7:50343634..50343717,+!p2@IKZF1!1.37!22.57!IKZF1;;chr2:231090433..231090469,+!p1@SP140!1.34!20.94!SP140;;chr6:106534192..106534224,+!p1@PRDM1!1.33!56.59!PRDM1;;chr9:102584241..102584261,+!p4@NR4A3!1.33!31.57!NR4A3;;chr4:185395633..185395651,-!p2@IRF2!1.30!30.10!IRF2;;chr2:192015701..192015743,-!p1@STAT4!1.30!26.01!STAT4;;chr12:11802753..11802834,+!p2@ETV6!1.29!88.98!ETV6;;chr1:157108764..157108776,-!p7@ETV3!1.29!18.32!ETV3;;chr2:68592394..68592405,+!p2@PLEK!1.27!17.83!PLEK;;chr19:20188776..20188826,+!p1@ZNF90!1.26!46.29!ZNF90;;chr2:61108771..61108789,+!p4@REL!1.26!25.84!REL;;chr6:106534230..106534254,+!p2@PRDM1!1.25!41.55!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.24!19.46!ATF5;;chr16:31885093..31885165,+!p1@ZNF267!1.23!239.46!ZNF267;;chr9:102584278..102584285,+!p5@NR4A3!1.22!15.70!NR4A3;;chr2:231090471..231090504,+!p2@SP140!1.21!15.05!SP140;;chr2:61108650..61108687,+!p2@REL!1.19!70.17!REL;;chr6:12012170..12012245,+!p1@HIVEP1!1.16!67.88!HIVEP1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.16!18.81!NFKBIZ;;chr2:169312725..169312810,+!p1@CERS6!1.15!316.34!CERS6;;chr11:47237922..47237964,+!p4@DDB2!1.15!15.05!DDB2;;chrX:56258844..56258882,+!p1@KLF8!1.13!17.34!KLF8;;chr4:103422499..103422632,+!p1@NFKB1!1.10!240.28!NFKB1;;chr19:45579725..45579743,-!p1@ZNF296!1.09!51.36!ZNF296;;chr22:38380543..38380569,-!p1@SOX10!1.07!10.80!SOX10;;chr12:54785074..54785122,-!p2@ZNF385A!1.06!16.36!ZNF385A;;chr7:128577972..128578047,+!p1@IRF5!1.05!16.19!IRF5;;chr6:144385698..144385742,-!p2@PLAGL1!1.04!12.27!PLAGL1;;chr19:20150268..20150298,-!p2@ZNF682!1.03!18.48!ZNF682;;chr2:192015750..192015793,-!p2@STAT4!1.03!13.25!STAT4;;chr7:150102756..150102772,+!p5@ZNF775!1.03!9.65!ZNF775;;chr2:214016254..214016282,-!p7@IKZF2!1.01!9.16!IKZF2;;chr1:157108728..157108744,-!p5@ETV3!1.01!9.16!ETV3;;chr13:41593425..41593480,-!p1@ELF1!1.00!59.05!ELF1;;chr19:20011744..20011770,+!p1@ZNF93!1.00!35.66!ZNF93;;chr6:12012249..12012266,+!p5@HIVEP1!0.99!15.38!HIVEP1;;chr19:20188831..20188844,+!p2@ZNF90!0.99!8.83!ZNF90;;chr11:47399996..47400014,-!p4@SPI1!0.99!8.83!SPI1;;chr12:27485785..27485816,+!p1@ARNTL2!0.98!61.17!ARNTL2;;chr5:321810..321877,+!p1@AHRR!0.98!28.13!AHRR;;chr14:75988771..75988826,+!p1@BATF!0.98!11.61!BATF;;chr19:45504688..45504782,+!p1@RELB!0.97!52.50!RELB;;chr1:8935472..8935488,-!p20@ENO1!0.97!8.34!ENO1;;chr16:85932760..85932775,+!p1@IRF8!0.96!8.18!IRF8;;chr2:178128250..178128293,-!p6@NFE2L2!0.95!20.45!NFE2L2;;chr4:103478257..103478273,+!p28@NFKB1!0.95!8.01!NFKB1;;chr20:62462566..62462631,-!p1@ZBTB46!0.94!14.88!ZBTB46;;chr2:214015343..214015366,-!p3@IKZF2!0.94!7.69!IKZF2;;chr11:47400045..47400060,-!p6@SPI1!0.93!7.52!SPI1;;chr4:185395191..185395226,-!p4@IRF2!0.92!10.47!IRF2;;chr9:117150254..117150271,-!p1@AKNA!0.90!19.79!AKNA;;chr1:221052776..221052799,+!p1@HLX!0.90!12.92!HLX;;chr20:50159198..50159299,-!p1@NFATC2!0.90!10.30!NFATC2;;chr10:104154246..104154347,+!p3@NFKB2!0.88!42.36!NFKB2;;chr1:221052733..221052749,+!p2@HLX!0.88!8.67!HLX;;chrX:56258811..56258838,+!p2@KLF8!0.87!8.67!KLF8;;chr2:74229812..74229867,+!p1@TET3!0.86!16.36!TET3;;chr19:12444440..12444455,-!p1@ZNF563!0.86!11.29!ZNF563;;chr11:47400032..47400043,-!p5@SPI1!0.86!6.22!SPI1;;chr11:47236584..47236679,+!p1@DDB2!0.85!70.01!DDB2;;chr19:37019136..37019178,-!p1@ZNF260!0.85!52.50!ZNF260;;chr7:17338324..17338341,+!p3@AHR!0.85!21.43!AHR;;chr19:20011775..20011800,+!p2@ZNF93!0.85!11.29!ZNF93;;chrX:56258900..56258917,+!p4@KLF8!0.85!6.05!KLF8;;chr3:5021113..5021180,+!p1@BHLHE40!0.84!440.32!BHLHE40;;chr10:3827371..3827386,-!p2@KLF6!0.84!53.16!KLF6;;chr9:117160738..117160782,-!p2@AKNA!0.84!25.84!AKNA;;chr1:10754477..10754517,-!p1@CASZ1!0.84!10.30!CASZ1;;chr15:85144307..85144329,+!p2@ZSCAN2!0.84!6.87!ZSCAN2;;chr1:25291620..25291635,-!p4@RUNX3!0.84!5.89!RUNX3;;chr2:214014959..214015006,-!p4@IKZF2!0.83!5.72!IKZF2;;chr2:231090344..231090361,-!p3@SP110!0.83!5.72!SP110;;chr2:214015111..214015179,-!p1@IKZF2!0.82!10.47!IKZF2;;chr3:40547564..40547616,+!p1@ZNF620!0.82!8.18!ZNF620;;chr19:12476469..12476509,-!p2@ZNF442!0.81!9.65!ZNF442;;chr3:178789993..178790049,-!p5@ZMAT3!0.81!8.34!ZMAT3;;chr20:46130619..46130664,+!p1@NCOA3!0.80!157.02!NCOA3;;chr18:56532100..56532130,+!p1@ZNF532!0.79!9.98!ZNF532;;chr14:89883509..89883587,-!p2@FOXN3!0.78!37.95!FOXN3;;chr19:12476443..12476467,-!p1@ZNF442!0.78!8.67!ZNF442;;chr6:29648890..29648944,-!p1@ZFP57!0.78!5.07!ZFP57;;chr7:106810484..106810494,+!p4@HBP1!0.78!5.07!HBP1;;chr13:28543285..28543314,-!p2@CDX2!0.78!5.07!CDX2;;chr15:50647274..50647336,-!p1@GABPB1!0.77!36.97!GABPB1;;chr10:51572339..51572376,+!p4@NCOA4!0.77!11.61!NCOA4;;chr1:221052840..221052875,+!p4@HLX!0.77!5.89!HLX;;chr12:54785054..54785072,-!p4@ZNF385A!0.77!5.56!ZNF385A;;chr11:47399947..47399961,-!p3@SPI1!0.77!4.91!SPI1;;chr3:71114563..71114584,-!p49@FOXP1!0.77!4.91!FOXP1;;chr4:57547454..57547469,-!p1@HOPX!0.77!4.91!HOPX;;chr10:51572408..51572454,+!p3@NCOA4!0.76!30.59!NCOA4;;chr1:157108180..157108193,-!p2@ETV3!0.76!27.81!ETV3;;chr10:35484053..35484076,+!p1@CREM!0.76!12.59!CREM;;chr19:3573282..3573289,+!p5@HMG20B!0.76!6.05!HMG20B;;chr8:81397876..81397898,+!p5@ZBTB10!0.76!5.72!ZBTB10;;chr12:54778471..54778528,-!p1@ZNF385A!0.76!4.74!ZNF385A;;chr17:40440359..40440386,+!p4@STAT5A!0.76!4.74!STAT5A;;chr19:3574157..3574180,+!p4@HMG20B!0.76!4.74!HMG20B;;chr1:6479968..6479986,-!p1@HES2!0.76!4.74!HES2;;chr2:48541789..48541874,+!p1@FOXN2!0.75!116.29!FOXN2;;chr19:20278012..20278034,+!p1@ZNF486!0.75!42.69!ZNF486;;chr10:35484804..35484902,+!p2@CREM!0.75!19.14!CREM;;chr10:104155659..104155676,+!p4@NFKB2!0.75!5.89!NFKB2;;chr6:44233252..44233296,-!p1@NFKBIE!0.74!49.40!NFKBIE;;chr8:72756063..72756125,-!p1@MSC!0.74!9.81!MSC;;chr14:74226961..74227020,-!p1@C14orf43!0.73!32.06!C14orf43;;chr12:27485823..27485868,+!p2@ARNTL2!0.73!19.46!ARNTL2;;chr1:151319283..151319314,-!p4@RFX5!0.73!4.91!RFX5;;chr11:13299319..13299424,+!p1@ARNTL!0.72!48.42!ARNTL;;chr19:12273866..12273935,+!p1@ZNF136!0.72!42.69!ZNF136;;chr1:157108282..157108347,-!p3@ETV3!0.72!9.49!ETV3;;chr19:36391434..36391450,-!p1@NFKBID!0.72!9.00!NFKBID;;chr8:81397846..81397860,+!p3@ZBTB10!0.72!5.56!ZBTB10;;chr12:27485762..27485776,+!p3@ARNTL2!0.71!12.10!ARNTL2;;chr12:12764917..12764931,+!p4@CREBL2!0.71!5.56!CREBL2;;chr12:101869096..101869118,+!p1@SPIC!0.71!4.09!SPIC;;chr2:223163706..223163730,-!p1@PAX3!0.71!4.09!PAX3;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.69!12.43!ZNF525;;chr19:50432453..50432468,+!p1@ATF5!0.68!246.17!ATF5;;chr1:14026671..14026705,+!p2@PRDM2!0.68!26.01!PRDM2;;chr19:45250948..45250998,+!p3@BCL3!0.68!10.47!BCL3;;chr19:45254529..45254561,+!p10@BCL3!0.68!5.40!BCL3;;chr19:20011731..20011743,+!p3@ZNF93!0.68!5.07!ZNF93;;chr11:47237987..47237998,+!p5@DDB2!0.68!3.76!DDB2;;chr1:40915725..40915808,+!p1@ZNF643!0.67!12.10!ZNF643;;chr12:12764995..12765017,+!p3@CREBL2!0.67!5.40!CREBL2;;chr10:3827389..3827408,-!p1@KLF6!0.66!317.81!KLF6;;chr19:19932513..19932569,-!p1@ZNF506!0.66!78.84!ZNF506;;chr2:178128199..178128245,-!p3@NFE2L2!0.66!22.08!NFE2L2;;chr22:41697497..41697515,+!p2@ZC3H7B!0.66!11.12!ZC3H7B;;chr19:3574330..3574393,+!p2@HMG20B!0.66!3.60!HMG20B;;chr1:212782094..212782109,+!p1@ATF3!0.65!110.90!ATF3;;chr19:45251943..45252006,+!p1@BCL3!0.65!106.15!BCL3;;chr19:37341673..37341699,-!p3@ZNF790!0.65!6.54!ZNF790;;chr19:20278043..20278054,+!p2@ZNF486!0.65!3.43!ZNF486;;chr19:45251395..45251432,+!p8@BCL3!0.65!3.43!BCL3;;chr4:103423079..103423112,+!p4@NFKB1!0.65!3.43!NFKB1;;chrX:129244430..129244442,-!p5@ELF4!0.65!3.43!ELF4;;chr13:41593405..41593416,-!p9@ELF1!0.65!3.43!ELF1;;chr3:107318157..107318172,+!p6@BBX!0.64!5.07!BBX;;chr3:178789566..178789620,-!p1@ZMAT3!0.63!68.70!ZMAT3;;chr17:40540484..40540537,-!p2@STAT3!0.63!36.97!STAT3;;chr14:35872453..35872485,-!p2@NFKBIA!0.63!9.00!NFKBIA;;chr5:172484377..172484418,+!p2@C5orf41!0.63!5.89!CREBRF;;chr22:41697484..41697496,+!p3@ZC3H7B!0.63!4.42!ZC3H7B;;chr14:75988831..75988847,+!p2@BATF!0.63!3.27!BATF;;chr11:34642612..34642646,+!p1@EHF!0.63!3.27!EHF;;chr19:19976683..19976709,+!p1@ZNF253!0.62!16.19!ZNF253;;chr6:12011943..12012015,+!p2@HIVEP1!0.62!11.78!HIVEP1;;chr11:47235980..47236028,+!p3@DDB2!0.62!8.18!DDB2;;chr2:61108689..61108694,+!p6@REL!0.62!4.09!REL;;chr15:31619013..31619095,+!p1@KLF13!0.61!86.04!KLF13;;chr2:239148671..239148686,-!p1@HES6!0.61!13.25!HES6;;chrX:101186981..101187030,-!p1@ZMAT1!0.61!11.61!ZMAT1;;chr6:109804367..109804402,-!p2@ZBTB24!0.61!10.30!ZBTB24;;chr3:141121164..141121249,+!p1@ZBTB38!0.60!61.83!ZBTB38;;chr11:47236489..47236567,+!p2@DDB2!0.60!49.23!DDB2;;chr10:3827417..3827428,-!p3@KLF6!0.60!30.75!KLF6;;chr3:178789522..178789564,-!p2@ZMAT3!0.60!26.50!ZMAT3;;chr6:7108855..7108903,+!p5@RREB1!0.60!7.52!RREB1;;chr12:12764947..12764986,+!p2@CREBL2!0.60!6.54!CREBL2;;chr19:12444458..12444486,-!p2@ZNF563!0.60!4.74!ZNF563;;chr7:137620684..137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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000453;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990
 |ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/migratory%2520langerhans%2520cells%252c%2520donor3.CNhs13547.11903-125F4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11903-125F4
 |is_a=EFO:0002091;;FF:0011136
 |is_obsolete=
+|library_id=CNhs13547
+|library_id_phase_based=2:CNhs13547
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11903
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11903
 |name=migratory langerhans cells, donor3
 |namespace=
@@ Line 48: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=125
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@@ Line 61: / Line 79: @@
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 |sample_cell_line=
@@ Line 82: / Line 101: @@
 |top_motifs=FOX{F1,F2,J1}:1.91657510577;NFKB1_REL_RELA:1.42446032232;HSF1,2:1.38955999835;TLX2:1.34596255299;STAT1,3:1.155895852;PAX6:1.0990246427;SREBF1,2:1.02175520244;FOXN1:0.989940937341;IRF1,2:0.949954312726;NKX6-1,2:0.846754221928;NFIX:0.84166429436;FOXA2:0.748619632296;PRRX1,2:0.735496758168;ATF5_CREB3:0.702537974536;EVI1:0.669863795346;FOXQ1:0.667216998405;RORA:0.615501979383;STAT5{A,B}:0.591427165471;CDX1,2,4:0.568433365502;HOX{A6,A7,B6,B7}:0.564823941778;SPI1:0.556717700982;RUNX1..3:0.556110185437;ESRRA:0.520531149927;RFX2..5_RFXANK_RFXAP:0.512730068261;FOXP3:0.491407475324;OCT4_SOX2{dimer}:0.488684320193;SPZ1:0.488224739777;BPTF:0.471547760711;ELF1,2,4:0.441951707508;ZBTB16:0.426630995777;NANOG{mouse}:0.411880442005;NKX2-2,8:0.411450480796;ATF2:0.401677898102;NANOG:0.392210918177;SPIB:0.337796629289;LMO2:0.327148965366;AHR_ARNT_ARNT2:0.323044936063;PDX1:0.322962797159;POU1F1:0.320323128874;JUN:0.293871161345;ELK1,4_GABP{A,B1}:0.267354374068;RXRA_VDR{dimer}:0.2599701772;ALX1:0.254736592866;SOX2:0.228404107775;CUX2:0.227157910674;GLI1..3:0.212865684712;NKX2-3_NKX2-5:0.197479461744;FOX{D1,D2}:0.194165261208;FOSL2:0.180471112316;HMX1:0.17813498283;ESR1:0.17637810714;IKZF2:0.175938550639;YY1:0.162438581394;CRX:0.160370164963;DMAP1_NCOR{1,2}_SMARC:0.155548134391;ZEB1:0.149253848145;HOXA9_MEIS1:0.144189371598;NR5A1,2:0.143880699634;ZNF148:0.127052923521;ETS1,2:0.125233479474;HNF4A_NR2F1,2:0.117731175164;POU2F1..3:0.100097793259;IRF7:0.0939260644198;TGIF1:0.0786446556309;NFE2:0.0630468094117;ALX4:0.0586980634334;HMGA1,2:0.0438258017739;SNAI1..3:0.03059560824;PBX1:0.0280262260442;PAX2:0.0179911627642;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0124136253724;NFE2L1:0.00799688582549;MYB:0.00189934981788;CREB1:-0.000752245879971;ARID5B:-0.0233314266428;ZFP161:-0.051705835757;ATF4:-0.0634893217625;BACH2:-0.0731941704699;TAL1_TCF{3,4,12}:-0.0771017157299;NFE2L2:-0.0783714278928;TFCP2:-0.0858139845313;LHX3,4:-0.0973243992469;NKX3-1:-0.0998743855918;SRF:-0.135707427866;FOXM1:-0.165248845639;NRF1:-0.167319621459;HNF1A:-0.1674142706;PAX8:-0.190950629171;MYFfamily:-0.195734867611;GATA6:-0.19941451988;HAND1,2:-0.21801589118;EP300:-0.253748801872;NFY{A,B,C}:-0.258128066459;FOXP1:-0.260881828199;STAT2,4,6:-0.264007885081;SP1:-0.274045331186;NFIL3:-0.280951376048;ZNF143:-0.292862979455;MYOD1:-0.309852504636;TP53:-0.316960744333;ONECUT1,2:-0.319247686648;SOX5:-0.328354309669;MTF1:-0.336015702236;FOS_FOS{B,L1}_JUN{B,D}:-0.337778473427;SOX17:-0.342338777554;ATF6:-0.361000778029;MEF2{A,B,C,D}:-0.390935927662;HES1:-0.418599387752;PAX4:-0.445177451958;ZNF238:-0.44579109613;POU3F1..4:-0.45175695895;HOX{A4,D4}:-0.465876213907;AIRE:-0.467063577691;GFI1B:-0.46881508662;XBP1:-0.469253399157;MAZ:-0.476640408426;BREu{core}:-0.491222434287;MYBL2:-0.497045372061;TFAP2{A,C}:-0.516281469989;SMAD1..7,9:-0.535854032859;E2F1..5:-0.540135364332;LEF1_TCF7_TCF7L1,2:-0.540424996284;NFATC1..3:-0.545229737597;TOPORS:-0.550148625828;RFX1:-0.551072265405;NR6A1:-0.556869447367;NHLH1,2:-0.570569225892;VSX1,2:-0.573890171659;TBX4,5:-0.596291618006;POU5F1:-0.597678105186;FOXO1,3,4:-0.60900008162;TBP:-0.611744558458;HLF:-0.613633171816;MAFB:-0.634328817859;MED-1{core}:-0.636257991123;HBP1_HMGB_SSRP1_UBTF:-0.636463399431;GZF1:-0.638654868873;MTE{core}:-0.646599531841;HOX{A5,B5}:-0.651573846841;NR1H4:-0.657847206642;TFAP4:-0.677038397978;TLX1..3_NFIC{dimer}:-0.679403183523;AR:-0.682183792269;FOX{I1,J2}:-0.719927534776;PITX1..3:-0.722913631883;PAX5:-0.728283970321;CEBPA,B_DDIT3:-0.728385568084;EN1,2:-0.729551841268;XCPE1{core}:-0.786639708548;SOX{8,9,10}:-0.797186045995;CDC5L:-0.802239583426;NKX3-2:-0.80288489336;NKX2-1,4:-0.818249568172;PPARG:-0.824343351952;RBPJ:-0.873018532029;UFEwm:-0.879327752225;ZIC1..3:-0.8989321394;EBF1:-0.911631323069;IKZF1:-0.950680332504;TEAD1:-0.965721661108;TFDP1:-0.978453588553;GFI1:-0.989558266378;HIF1A:-0.992542155753;EGR1..3:-0.993077477023;MZF1:-0.99625219558;KLF4:-1.00031235838;ZBTB6:-1.00550073254;PAX3,7:-1.00582234046;HIC1:-1.01542580668;ZNF423:-1.01834592364;REST:-1.02027450059;GATA4:-1.06436269861;GTF2A1,2:-1.0788607899;PRDM1:-1.08046567421;PATZ1:-1.08877395712;RREB1:-1.11565278651;TFAP2B:-1.1708278462;GTF2I:-1.17173991605;ZNF384:-1.17830922073;NR3C1:-1.19963264749;TEF:-1.27802732197;ADNP_IRX_SIX_ZHX:-1.28018530764;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.30069758978;POU6F1:-1.34768516057;bHLH_family:-1.44901061743;PAX1,9:-1.47951745745;GCM1,2:-1.55842376228;RXR{A,B,G}:-1.66638308472;FOXD3:-1.66938338515;FOXL1:-1.82278870491;DBP:-2.28991727149;T:-2.31719032177
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11903-125F4;search_select_hide=table117:FF:11903-125F4
 }}

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FF:11903-125F4: Difference between revisions

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Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0