FF:11904-125F5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005013 | ||
|accession_numbers=CAGE;DRX008543;DRR009415;DRZ000840;DRZ002225 | |accession_numbers=CAGE;DRX008543;DRR009415;DRZ000840;DRZ002225;DRZ012190;DRZ013575 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453,CL:0000840,CL:0001014,CL:0001016 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000990,CL:0000255,CL:0000451,CL:0000453,CL:0000840,CL:0001014,CL:0001016 | ||
Line 9: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.63!430.38!IRF8;;chr2:68592406..68592424,+!p1@PLEK!2.57!373.91!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.48!301.47!SPI1;;chr9:102584262..102584276,+!p1@NR4A3!2.45!600.46!NR4A3;;chr6:391743..391759,+!p1@IRF4!2.45!280.09!IRF4;;chr9:102584159..102584174,+!p2@NR4A3!2.33!368.73!NR4A3;;chr2:61108808..61108821,+!p3@REL!2.27!229.70!REL;;chr2:61108878..61108891,+!p5@REL!2.24!173.90!REL;;chr12:72056800..72056834,+!p1@THAP2!2.20!210.13!THAP2;;chr2:157189180..157189290,-!p1@NR4A2!2.14!675.15!NR4A2;;chr19:54041669..54041697,+!p2@ZNF331!2.14!136.33!ZNF331;;chr1:25291475..25291511,-!p2@RUNX3!2.12!130.26!RUNX3;;chr19:54058073..54058088,+!p1@ZNF331!2.05!112.26!ZNF331;;chr7:50344289..50344323,+!p1@IKZF1!2.05!112.26!IKZF1;;chr9:102584241..102584261,+!p4@NR4A3!2.02!158.83!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!1.99!180.65!NR4A3;;chr2:61108695..61108753,+!p1@REL!1.97!597.08!REL;;chr6:106534192..106534224,+!p1@PRDM1!1.96!246.80!PRDM1;;chr19:45971246..45971265,+!p1@FOSB!1.94!1489.55!FOSB;;chr7:50344251..50344288,+!p3@IKZF1!1.94!85.27!IKZF1;;chr9:102584278..102584285,+!p5@NR4A3!1.89!76.27!NR4A3;;chr11:47400062..47400077,-!p2@SPI1!1.86!71.32!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.85!70.19!PLEK;;chr10:35484053..35484076,+!p1@CREM!1.83!158.83!CREM;;chr6:106534230..106534254,+!p2@PRDM1!1.81!155.01!PRDM1;;chr2:61108771..61108789,+!p4@REL!1.80!91.79!REL;;chr1:157108130..157108173,-!p1@ETV3!1.78!403.38!ETV3;;chr10:104155659..104155676,+!p4@NFKB2!1.70!60.97!NFKB2;;chr7:28725715..28725727,+!p3@CREB5!1.64!49.49!CREB5;;chr12:72056773..72056796,+!p3@THAP2!1.62!52.19!THAP2;;chr16:31885093..31885165,+!p1@ZNF267!1.60!565.36!ZNF267;;chr8:53373491..53373506,-!p4@ST18!1.58!37.35!ST18;;chr2:8822176..8822196,+!p1@ID2!1.57!4808.82!ID2;;chr5:71803177..71803255,-!p1@ZNF366!1.57!36.22!ZNF366;;chr19:36391434..36391450,-!p1@NFKBID!1.56!67.49!NFKBID;;chr7:28725740..28725778,+!p1@CREB5!1.55!295.62!CREB5;;chr10:35484090..35484104,+!p6@CREM!1.53!33.07!CREM;;chr4:103422499..103422632,+!p1@NFKB1!1.51!621.38!NFKB1;;chr7:28448965..28448994,+!p2@CREB5!1.51!107.09!CREB5;;chr17:80797886..80797906,-!p1@ZNF750!1.51!31.72!ZNF750;;chr12:52445218..52445237,+!p1@NR4A1!1.50!371.66!NR4A1;;chr20:50159198..50159299,-!p1@NFATC2!1.49!42.75!NFATC2;;chr12:96649259..96649290,+!p9@ELK3!1.48!29.25!ELK3;;chr10:104154415..104154434,+!p5@NFKB2!1.47!28.57!NFKB2;;chr13:41593392..41593403,-!p7@ELF1!1.47!28.57!ELF1;;chr11:47399996..47400014,-!p4@SPI1!1.45!27.45!SPI1;;chr19:45252008..45252024,+!p2@BCL3!1.44!85.94!BCL3;;chr11:47399947..47399961,-!p3@SPI1!1.44!26.77!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.43!26.10!SPI1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.42!35.55!NFKBIZ;;chr10:104155480..104155534,+!p2@NFKB2!1.40!149.83!NFKB2;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!35.77!ZNF385A;;chr1:157108746..157108762,-!p4@ETV3!1.39!23.62!ETV3;;chr22:38597987..38598021,+!p2@MAFF!1.37!133.41!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.37!24.75!THAP2;;chr14:35873947..35873965,-!p1@NFKBIA!1.36!1319.70!NFKBIA;;chr1:209979467..209979494,-!p1@IRF6!1.36!24.52!IRF6;;chr13:41593405..41593416,-!p9@ELF1!1.36!22.05!ELF1;;chr20:55204351..55204377,+!p1@TFAP2C!1.35!26.77!TFAP2C;;chr8:81397876..81397898,+!p5@ZBTB10!1.35!24.97!ZBTB10;;chr11:34642612..34642646,+!p1@EHF!1.35!21.37!EHF;;chr1:156470515..156470542,-!p2@MEF2D!1.34!107.09!MEF2D;;chr12:54778471..54778528,-!p1@ZNF385A!1.34!20.70!ZNF385A;;chr13:41593425..41593480,-!p1@ELF1!1.33!126.21!ELF1;;chr6:144385698..144385742,-!p2@PLAGL1!1.33!24.75!PLAGL1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.32!237.35!ZC3H12A;;chr12:54785054..54785072,-!p4@ZNF385A!1.30!21.37!ZNF385A;;chr4:106068026..106068084,+!p1@TET2!1.29!162.66!TET2;;chr3:5021268..5021282,+!p4@BHLHE40!1.29!37.57!BHLHE40;;chr6:44233252..44233296,-!p1@NFKBIE!1.28!175.25!NFKBIE;;chr1:25256756..25256774,-!p1@RUNX3!1.28!33.52!RUNX3;;chr19:50432132..50432217,+!p2@ATF5!1.28!21.60!ATF5;;chr3:39195037..39195069,-!p2@CSRNP1!1.27!106.86!CSRNP1;;chr2:157189317..157189325,-!p8@NR4A2!1.27!17.55!NR4A2;;chr9:102584329..102584341,+!p6@NR4A3!1.27!17.55!NR4A3;;chr8:22550982..22550999,-!p1@EGR3!1.26!47.47!EGR3;;chr12:26277817..26277863,-!p2@BHLHE41!1.26!23.17!BHLHE41;;chr19:50922187..50922204,+!p1@SPIB!1.26!17.10!SPIB;;chr2:70142232..70142251,+!p1@MXD1!1.25!93.81!MXD1;;chr7:104654690..104654704,+!p2@MLL5!1.25!33.07!MLL5;;chr4:57547454..57547469,-!p1@HOPX!1.25!16.65!HOPX;;chr20:62462566..62462631,-!p1@ZBTB46!1.24!30.82!ZBTB46;;chr6:106535598..106535637,+!p7@PRDM1!1.24!16.42!PRDM1;;chr11:47400045..47400060,-!p6@SPI1!1.24!16.42!SPI1;;chr19:38085978..38085996,-!p3@ZNF571!1.24!16.20!ZNF571;;chr1:212782094..212782109,+!p1@ATF3!1.22!416.43!ATF3;;chr12:26277956..26277980,-!p1@BHLHE41!1.22!55.12!BHLHE41;;chr8:123793988..123794016,+!p1@ZHX2!1.22!27.45!ZHX2;;chr7:104654718..104654741,+!p3@MLL5!1.22!22.72!MLL5;;chr3:5021113..5021180,+!p1@BHLHE40!1.21!1051.30!BHLHE40;;chr6:15246741..15246765,+!p9@JARID2!1.21!15.30!JARID2;;chr3:5022272..5022321,+!p7@BHLHE40!1.20!14.85!BHLHE40;;chr19:45251395..45251432,+!p8@BCL3!1.19!14.62!BCL3;;chr1:25256439..25256476,-!p3@RUNX3!1.19!14.40!RUNX3;;chr19:6110474..6110551,-!p1@RFX2!1.18!84.37!RFX2;;chr14:35872962..35873025,-!p3@NFKBIA!1.17!35.10!NFKBIA;;chr6:44355499..44355514,+!p3@CDC5L!1.16!14.62!CDC5L;;chr9:129567282..129567353,+!p1@ZBTB43!1.15!169.18!ZBTB43;;chr4:26322267..26322334,+!p3@RBPJ!1.15!31.95!RBPJ;;chr1:209979411..209979433,-!p2@IRF6!1.15!13.27!IRF6;;chr12:72056897..72056908,+!p12@THAP2!1.15!13.05!THAP2;;chr3:39195075..39195088,-!p1@CSRNP1!1.14!80.32!CSRNP1;;chr4:103422471..103422495,+!p2@NFKB1!1.14!35.32!NFKB1;;chr3:5021191..5021202,+!p3@BHLHE40!1.13!33.75!BHLHE40;;chr7:111846777..111846804,+!p2@ZNF277!1.13!14.62!ZNF277;;chr2:208394817..208394834,+!p3@CREB1!1.12!49.49!CREB1;;chr14:24020596..24020624,-!p3@ZFHX2!1.12!12.15!ZFHX2;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.42!BHLHE41;;chr10:3827371..3827386,-!p2@KLF6!1.09!95.16!KLF6;;chr6:15246200..15246214,+!p2@JARID2!1.09!31.72!JARID2;;chr9:117150254..117150271,-!p1@AKNA!1.09!31.27!AKNA;;chr2:178128250..178128293,-!p6@NFE2L2!1.09!28.80!NFE2L2;;chr1:157108764..157108776,-!p7@ETV3!1.09!11.25!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.08!56.02!HIVEP1;;chr2:61108650..61108687,+!p2@REL!1.08!54.89!REL;;chr3:37217736..37217753,-!p2@LRRFIP2!1.08!46.79!LRRFIP2;;chr14:75745523..75745537,+!p1@FOS!1.07!1292.70!FOS;;chr22:38598086..38598105,+!p1@MAFF!1.07!115.64!MAFF;;chr10:35484804..35484902,+!p2@CREM!1.07!41.40!CREM;;chr7:28448995..28449011,+!p4@CREB5!1.07!15.30!CREB5;;chr2:208031943..208031978,-!p5@KLF7!1.07!14.40!KLF7;;chr2:178128199..178128245,-!p3@NFE2L2!1.06!56.92!NFE2L2;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.52!BACH2;;chr17:40440225..40440268,+!p3@STAT5A!1.05!13.05!STAT5A;;chr19:54041645..54041661,+!p5@ZNF331!1.05!10.35!ZNF331;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.67!NFATC1;;chr19:53039233..53039247,+!p2@ZNF808!1.04!14.85!ZNF808;;chr1:25291461..25291472,-!p11@RUNX3!1.04!9.90!RUNX3;;chr2:48541789..48541874,+!p1@FOXN2!1.03!222.95!FOXN2;;chr8:81397820..81397836,+!p2@ZBTB10!1.03!12.15!ZBTB10;;chr8:53373515..53373526,-!p8@ST18!1.03!9.67!ST18;;chr19:38086030..38086048,-!p2@ZNF571!1.03!9.67!ZNF571;;chr9:110252035..110252057,-!p1@KLF4!1.02!153.66!KLF4;;chr5:321810..321877,+!p1@AHRR!1.02!30.82!AHRR;;chr14:35872926..35872951,-!p4@NFKBIA!1.02!13.50!NFKBIA;;chr12:52431016..52431071,+!p4@NR4A1!1.02!11.25!NR4A1;;chr7:50343634..50343717,+!p2@IKZF1!1.02!9.45!IKZF1;;chr4:26322616..26322652,+!p1@RBPJ!1.01!204.50!RBPJ;;chr3:63898321..63898396,+!p3@ATXN7!1.01!21.60!ATXN7;;chr7:28449015..28449024,+!p6@CREB5!1.01!9.22!CREB5;;chr16:29819630..29819645,+!p37@MAZ!1.01!9.22!MAZ;;chr15:50647274..50647336,-!p1@GABPB1!1.00!63.44!GABPB1;;chr14:35872453..35872485,-!p2@NFKBIA!1.00!22.72!NFKBIA;;chr1:156470494..156470505,-!p3@MEF2D!1.00!13.27!MEF2D;;chr17:38498594..38498661,+!p2@RARA!0.99!29.70!RARA;;chr1:157108282..157108347,-!p3@ETV3!0.99!18.67!ETV3;;chr16:88636875..88636886,+!p3@ZC3H18!0.99!12.37!ZC3H18;;chr11:65554528..65554546,+!p1@OVOL1!0.99!8.77!OVOL1;;chr2:28615716..28615733,+!p1@FOSL2!0.98!417.55!FOSL2;;chr20:47894569..47894799,-!p1@ZNFX1!0.98!233.97!ZNFX1;;chr12:124873357..124873401,-!p1@NCOR2!0.97!99.21!NCOR2;;chr14:89883509..89883587,-!p2@FOXN3!0.97!59.39!FOXN3;;chr10:104154246..104154347,+!p3@NFKB2!0.97!51.97!NFKB2;;chr1:157108180..157108193,-!p2@ETV3!0.97!45.89!ETV3;;chr8:81397846..81397860,+!p3@ZBTB10!0.97!10.57!ZBTB10;;chr4:103514596..103514605,+!p44@NFKB1!0.97!8.32!NFKB1;;chr2:10091815..10091864,+!p1@GRHL1!0.96!10.80!GRHL1;;chr7:27903656..27903678,-!p11@JAZF1!0.96!8.10!JAZF1;;chr19:36389729..36389751,-!p3@NFKBID!0.96!8.10!NFKBID;;chr2:169312725..169312810,+!p1@CERS6!0.95!197.08!CERS6;;chr6:12012249..12012266,+!p5@HIVEP1!0.95!13.95!HIVEP1;;chr2:169312600..169312606,+!p2@CERS6!0.95!12.60!CERS6;;chr1:24645832..24645853,+!p1@GRHL3!0.95!7.87!GRHL3;;chr1:24645921..24645973,+!p2@GRHL3!0.95!7.87!GRHL3;;chr3:170075436..170075520,+!p1@SKIL!0.94!172.78!SKIL;;chr6:126240463..126240489,+!p6@NCOA7!0.94!8.77!NCOA7;;chr7:115670804..115670825,-!p1@TFEC!0.94!7.65!TFEC;;chr4:103478257..103478273,+!p28@NFKB1!0.94!7.65!NFKB1;;chr19:38270528..38270545,-!p2@ZNF573!0.94!7.65!ZNF573;;chr1:157108728..157108744,-!p5@ETV3!0.94!7.65!ETV3;;chr6:15246261..15246312,+!p1@JARID2!0.93!191.45!JARID2;;chr1:120190786..120190915,-!p1@ZNF697!0.93!56.24!ZNF697;;chr19:45250948..45250998,+!p3@BCL3!0.93!19.35!BCL3;;chr15:90544532..90544563,+!p1@ZNF710!0.93!15.30!ZNF710;;chr7:44924939..44924993,-!p2@PURB!0.93!15.07!PURB;;chr1:6684918..6684936,+!p2@THAP3!0.93!9.22!THAP3;;chr2:157186630..157186686,-!p6@NR4A2!0.93!7.42!NR4A2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.93!7.42!LRRFIP1;;chr7:17338324..17338341,+!p3@AHR!0.92!25.20!AHR;;chr12:12764995..12765017,+!p3@CREBL2!0.92!10.57!CREBL2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.91!388.98!NFKBIZ;;chr19:45504688..45504782,+!p1@RELB!0.91!45.67!RELB;;chr1:153895251..153895342,-!p2@GATAD2B!0.91!27.45!GATAD2B;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.35!NCOA7;;chr1:93812261..93812303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| |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.63!430.38!IRF8;;chr2:68592406..68592424,+!p1@PLEK!2.57!373.91!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.48!301.47!SPI1;;chr9:102584262..102584276,+!p1@NR4A3!2.45!600.46!NR4A3;;chr6:391743..391759,+!p1@IRF4!2.45!280.09!IRF4;;chr9:102584159..102584174,+!p2@NR4A3!2.33!368.73!NR4A3;;chr2:61108808..61108821,+!p3@REL!2.27!229.70!REL;;chr2:61108878..61108891,+!p5@REL!2.24!173.90!REL;;chr12:72056800..72056834,+!p1@THAP2!2.20!210.13!THAP2;;chr2:157189180..157189290,-!p1@NR4A2!2.14!675.15!NR4A2;;chr19:54041669..54041697,+!p2@ZNF331!2.14!136.33!ZNF331;;chr1:25291475..25291511,-!p2@RUNX3!2.12!130.26!RUNX3;;chr19:54058073..54058088,+!p1@ZNF331!2.05!112.26!ZNF331;;chr7:50344289..50344323,+!p1@IKZF1!2.05!112.26!IKZF1;;chr9:102584241..102584261,+!p4@NR4A3!2.02!158.83!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!1.99!180.65!NR4A3;;chr2:61108695..61108753,+!p1@REL!1.97!597.08!REL;;chr6:106534192..106534224,+!p1@PRDM1!1.96!246.80!PRDM1;;chr19:45971246..45971265,+!p1@FOSB!1.94!1489.55!FOSB;;chr7:50344251..50344288,+!p3@IKZF1!1.94!85.27!IKZF1;;chr9:102584278..102584285,+!p5@NR4A3!1.89!76.27!NR4A3;;chr11:47400062..47400077,-!p2@SPI1!1.86!71.32!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.85!70.19!PLEK;;chr10:35484053..35484076,+!p1@CREM!1.83!158.83!CREM;;chr6:106534230..106534254,+!p2@PRDM1!1.81!155.01!PRDM1;;chr2:61108771..61108789,+!p4@REL!1.80!91.79!REL;;chr1:157108130..157108173,-!p1@ETV3!1.78!403.38!ETV3;;chr10:104155659..104155676,+!p4@NFKB2!1.70!60.97!NFKB2;;chr7:28725715..28725727,+!p3@CREB5!1.64!49.49!CREB5;;chr12:72056773..72056796,+!p3@THAP2!1.62!52.19!THAP2;;chr16:31885093..31885165,+!p1@ZNF267!1.60!565.36!ZNF267;;chr8:53373491..53373506,-!p4@ST18!1.58!37.35!ST18;;chr2:8822176..8822196,+!p1@ID2!1.57!4808.82!ID2;;chr5:71803177..71803255,-!p1@ZNF366!1.57!36.22!ZNF366;;chr19:36391434..36391450,-!p1@NFKBID!1.56!67.49!NFKBID;;chr7:28725740..28725778,+!p1@CREB5!1.55!295.62!CREB5;;chr10:35484090..35484104,+!p6@CREM!1.53!33.07!CREM;;chr4:103422499..103422632,+!p1@NFKB1!1.51!621.38!NFKB1;;chr7:28448965..28448994,+!p2@CREB5!1.51!107.09!CREB5;;chr17:80797886..80797906,-!p1@ZNF750!1.51!31.72!ZNF750;;chr12:52445218..52445237,+!p1@NR4A1!1.50!371.66!NR4A1;;chr20:50159198..50159299,-!p1@NFATC2!1.49!42.75!NFATC2;;chr12:96649259..96649290,+!p9@ELK3!1.48!29.25!ELK3;;chr10:104154415..104154434,+!p5@NFKB2!1.47!28.57!NFKB2;;chr13:41593392..41593403,-!p7@ELF1!1.47!28.57!ELF1;;chr11:47399996..47400014,-!p4@SPI1!1.45!27.45!SPI1;;chr19:45252008..45252024,+!p2@BCL3!1.44!85.94!BCL3;;chr11:47399947..47399961,-!p3@SPI1!1.44!26.77!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.43!26.10!SPI1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.42!35.55!NFKBIZ;;chr10:104155480..104155534,+!p2@NFKB2!1.40!149.83!NFKB2;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!35.77!ZNF385A;;chr1:157108746..157108762,-!p4@ETV3!1.39!23.62!ETV3;;chr22:38597987..38598021,+!p2@MAFF!1.37!133.41!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.37!24.75!THAP2;;chr14:35873947..35873965,-!p1@NFKBIA!1.36!1319.70!NFKBIA;;chr1:209979467..209979494,-!p1@IRF6!1.36!24.52!IRF6;;chr13:41593405..41593416,-!p9@ELF1!1.36!22.05!ELF1;;chr20:55204351..55204377,+!p1@TFAP2C!1.35!26.77!TFAP2C;;chr8:81397876..81397898,+!p5@ZBTB10!1.35!24.97!ZBTB10;;chr11:34642612..34642646,+!p1@EHF!1.35!21.37!EHF;;chr1:156470515..156470542,-!p2@MEF2D!1.34!107.09!MEF2D;;chr12:54778471..54778528,-!p1@ZNF385A!1.34!20.70!ZNF385A;;chr13:41593425..41593480,-!p1@ELF1!1.33!126.21!ELF1;;chr6:144385698..144385742,-!p2@PLAGL1!1.33!24.75!PLAGL1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.32!237.35!ZC3H12A;;chr12:54785054..54785072,-!p4@ZNF385A!1.30!21.37!ZNF385A;;chr4:106068026..106068084,+!p1@TET2!1.29!162.66!TET2;;chr3:5021268..5021282,+!p4@BHLHE40!1.29!37.57!BHLHE40;;chr6:44233252..44233296,-!p1@NFKBIE!1.28!175.25!NFKBIE;;chr1:25256756..25256774,-!p1@RUNX3!1.28!33.52!RUNX3;;chr19:50432132..50432217,+!p2@ATF5!1.28!21.60!ATF5;;chr3:39195037..39195069,-!p2@CSRNP1!1.27!106.86!CSRNP1;;chr2:157189317..157189325,-!p8@NR4A2!1.27!17.55!NR4A2;;chr9:102584329..102584341,+!p6@NR4A3!1.27!17.55!NR4A3;;chr8:22550982..22550999,-!p1@EGR3!1.26!47.47!EGR3;;chr12:26277817..26277863,-!p2@BHLHE41!1.26!23.17!BHLHE41;;chr19:50922187..50922204,+!p1@SPIB!1.26!17.10!SPIB;;chr2:70142232..70142251,+!p1@MXD1!1.25!93.81!MXD1;;chr7:104654690..104654704,+!p2@MLL5!1.25!33.07!MLL5;;chr4:57547454..57547469,-!p1@HOPX!1.25!16.65!HOPX;;chr20:62462566..62462631,-!p1@ZBTB46!1.24!30.82!ZBTB46;;chr6:106535598..106535637,+!p7@PRDM1!1.24!16.42!PRDM1;;chr11:47400045..47400060,-!p6@SPI1!1.24!16.42!SPI1;;chr19:38085978..38085996,-!p3@ZNF571!1.24!16.20!ZNF571;;chr1:212782094..212782109,+!p1@ATF3!1.22!416.43!ATF3;;chr12:26277956..26277980,-!p1@BHLHE41!1.22!55.12!BHLHE41;;chr8:123793988..123794016,+!p1@ZHX2!1.22!27.45!ZHX2;;chr7:104654718..104654741,+!p3@MLL5!1.22!22.72!MLL5;;chr3:5021113..5021180,+!p1@BHLHE40!1.21!1051.30!BHLHE40;;chr6:15246741..15246765,+!p9@JARID2!1.21!15.30!JARID2;;chr3:5022272..5022321,+!p7@BHLHE40!1.20!14.85!BHLHE40;;chr19:45251395..45251432,+!p8@BCL3!1.19!14.62!BCL3;;chr1:25256439..25256476,-!p3@RUNX3!1.19!14.40!RUNX3;;chr19:6110474..6110551,-!p1@RFX2!1.18!84.37!RFX2;;chr14:35872962..35873025,-!p3@NFKBIA!1.17!35.10!NFKBIA;;chr6:44355499..44355514,+!p3@CDC5L!1.16!14.62!CDC5L;;chr9:129567282..129567353,+!p1@ZBTB43!1.15!169.18!ZBTB43;;chr4:26322267..26322334,+!p3@RBPJ!1.15!31.95!RBPJ;;chr1:209979411..209979433,-!p2@IRF6!1.15!13.27!IRF6;;chr12:72056897..72056908,+!p12@THAP2!1.15!13.05!THAP2;;chr3:39195075..39195088,-!p1@CSRNP1!1.14!80.32!CSRNP1;;chr4:103422471..103422495,+!p2@NFKB1!1.14!35.32!NFKB1;;chr3:5021191..5021202,+!p3@BHLHE40!1.13!33.75!BHLHE40;;chr7:111846777..111846804,+!p2@ZNF277!1.13!14.62!ZNF277;;chr2:208394817..208394834,+!p3@CREB1!1.12!49.49!CREB1;;chr14:24020596..24020624,-!p3@ZFHX2!1.12!12.15!ZFHX2;;chr12:26277929..26277955,-!p3@BHLHE41!1.10!16.42!BHLHE41;;chr10:3827371..3827386,-!p2@KLF6!1.09!95.16!KLF6;;chr6:15246200..15246214,+!p2@JARID2!1.09!31.72!JARID2;;chr9:117150254..117150271,-!p1@AKNA!1.09!31.27!AKNA;;chr2:178128250..178128293,-!p6@NFE2L2!1.09!28.80!NFE2L2;;chr1:157108764..157108776,-!p7@ETV3!1.09!11.25!ETV3;;chr6:12012170..12012245,+!p1@HIVEP1!1.08!56.02!HIVEP1;;chr2:61108650..61108687,+!p2@REL!1.08!54.89!REL;;chr3:37217736..37217753,-!p2@LRRFIP2!1.08!46.79!LRRFIP2;;chr14:75745523..75745537,+!p1@FOS!1.07!1292.70!FOS;;chr22:38598086..38598105,+!p1@MAFF!1.07!115.64!MAFF;;chr10:35484804..35484902,+!p2@CREM!1.07!41.40!CREM;;chr7:28448995..28449011,+!p4@CREB5!1.07!15.30!CREB5;;chr2:208031943..208031978,-!p5@KLF7!1.07!14.40!KLF7;;chr2:178128199..178128245,-!p3@NFE2L2!1.06!56.92!NFE2L2;;chr6:91006518..91006570,-!p1@BACH2!1.06!24.52!BACH2;;chr17:40440225..40440268,+!p3@STAT5A!1.05!13.05!STAT5A;;chr19:54041645..54041661,+!p5@ZNF331!1.05!10.35!ZNF331;;chr18:77155922..77155939,+!p1@NFATC1!1.04!27.67!NFATC1;;chr19:53039233..53039247,+!p2@ZNF808!1.04!14.85!ZNF808;;chr1:25291461..25291472,-!p11@RUNX3!1.04!9.90!RUNX3;;chr2:48541789..48541874,+!p1@FOXN2!1.03!222.95!FOXN2;;chr8:81397820..81397836,+!p2@ZBTB10!1.03!12.15!ZBTB10;;chr8:53373515..53373526,-!p8@ST18!1.03!9.67!ST18;;chr19:38086030..38086048,-!p2@ZNF571!1.03!9.67!ZNF571;;chr9:110252035..110252057,-!p1@KLF4!1.02!153.66!KLF4;;chr5:321810..321877,+!p1@AHRR!1.02!30.82!AHRR;;chr14:35872926..35872951,-!p4@NFKBIA!1.02!13.50!NFKBIA;;chr12:52431016..52431071,+!p4@NR4A1!1.02!11.25!NR4A1;;chr7:50343634..50343717,+!p2@IKZF1!1.02!9.45!IKZF1;;chr4:26322616..26322652,+!p1@RBPJ!1.01!204.50!RBPJ;;chr3:63898321..63898396,+!p3@ATXN7!1.01!21.60!ATXN7;;chr7:28449015..28449024,+!p6@CREB5!1.01!9.22!CREB5;;chr16:29819630..29819645,+!p37@MAZ!1.01!9.22!MAZ;;chr15:50647274..50647336,-!p1@GABPB1!1.00!63.44!GABPB1;;chr14:35872453..35872485,-!p2@NFKBIA!1.00!22.72!NFKBIA;;chr1:156470494..156470505,-!p3@MEF2D!1.00!13.27!MEF2D;;chr17:38498594..38498661,+!p2@RARA!0.99!29.70!RARA;;chr1:157108282..157108347,-!p3@ETV3!0.99!18.67!ETV3;;chr16:88636875..88636886,+!p3@ZC3H18!0.99!12.37!ZC3H18;;chr11:65554528..65554546,+!p1@OVOL1!0.99!8.77!OVOL1;;chr2:28615716..28615733,+!p1@FOSL2!0.98!417.55!FOSL2;;chr20:47894569..47894799,-!p1@ZNFX1!0.98!233.97!ZNFX1;;chr12:124873357..124873401,-!p1@NCOR2!0.97!99.21!NCOR2;;chr14:89883509..89883587,-!p2@FOXN3!0.97!59.39!FOXN3;;chr10:104154246..104154347,+!p3@NFKB2!0.97!51.97!NFKB2;;chr1:157108180..157108193,-!p2@ETV3!0.97!45.89!ETV3;;chr8:81397846..81397860,+!p3@ZBTB10!0.97!10.57!ZBTB10;;chr4:103514596..103514605,+!p44@NFKB1!0.97!8.32!NFKB1;;chr2:10091815..10091864,+!p1@GRHL1!0.96!10.80!GRHL1;;chr7:27903656..27903678,-!p11@JAZF1!0.96!8.10!JAZF1;;chr19:36389729..36389751,-!p3@NFKBID!0.96!8.10!NFKBID;;chr2:169312725..169312810,+!p1@CERS6!0.95!197.08!CERS6;;chr6:12012249..12012266,+!p5@HIVEP1!0.95!13.95!HIVEP1;;chr2:169312600..169312606,+!p2@CERS6!0.95!12.60!CERS6;;chr1:24645832..24645853,+!p1@GRHL3!0.95!7.87!GRHL3;;chr1:24645921..24645973,+!p2@GRHL3!0.95!7.87!GRHL3;;chr3:170075436..170075520,+!p1@SKIL!0.94!172.78!SKIL;;chr6:126240463..126240489,+!p6@NCOA7!0.94!8.77!NCOA7;;chr7:115670804..115670825,-!p1@TFEC!0.94!7.65!TFEC;;chr4:103478257..103478273,+!p28@NFKB1!0.94!7.65!NFKB1;;chr19:38270528..38270545,-!p2@ZNF573!0.94!7.65!ZNF573;;chr1:157108728..157108744,-!p5@ETV3!0.94!7.65!ETV3;;chr6:15246261..15246312,+!p1@JARID2!0.93!191.45!JARID2;;chr1:120190786..120190915,-!p1@ZNF697!0.93!56.24!ZNF697;;chr19:45250948..45250998,+!p3@BCL3!0.93!19.35!BCL3;;chr15:90544532..90544563,+!p1@ZNF710!0.93!15.30!ZNF710;;chr7:44924939..44924993,-!p2@PURB!0.93!15.07!PURB;;chr1:6684918..6684936,+!p2@THAP3!0.93!9.22!THAP3;;chr2:157186630..157186686,-!p6@NR4A2!0.93!7.42!NR4A2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.93!7.42!LRRFIP1;;chr7:17338324..17338341,+!p3@AHR!0.92!25.20!AHR;;chr12:12764995..12765017,+!p3@CREBL2!0.92!10.57!CREBL2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.91!388.98!NFKBIZ;;chr19:45504688..45504782,+!p1@RELB!0.91!45.67!RELB;;chr1:153895251..153895342,-!p2@GATAD2B!0.91!27.45!GATAD2B;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.35!NCOA7;;chr1:93812261..93812303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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000451;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000453;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000840;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0001014;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |ffid_belonging_in_development=CL:0000049,CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 41: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/immature%2520langerhans%2520cells%252c%2520donor1.CNhs13537.11904-125F5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11904-125F5 | |id=FF:11904-125F5 | ||
|is_a=EFO:0002091;;FF:0011135 | |is_a=EFO:0002091;;FF:0011135 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13537 | |library_id=CNhs13537 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs13537 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11904 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11904 | |||
|name=immature langerhans cells, donor1 | |name=immature langerhans cells, donor1 | ||
|namespace= | |namespace= | ||
Line 51: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13537,LSID1029,release012,COMPLETED | |profile_hcage=CNhs13537,LSID1029,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 90: | Line 101: | ||
|top_motifs=NFKB1_REL_RELA:2.6578241477;CREB1:2.54825868468;ATF5_CREB3:2.50487662999;HSF1,2:2.32388151032;FOXN1:2.29992511255;JUN:2.09523632546;ATF4:2.09466218661;NANOG{mouse}:2.01863221224;TLX2:1.98585492075;SPI1:1.62589858563;PAX2:1.56050380238;FOXP3:1.54094506879;FOSL2:1.48397540523;SPIB:1.48350992749;RUNX1..3:1.42662025206;DMAP1_NCOR{1,2}_SMARC:1.28984636052;TGIF1:1.28149331303;ATF2:1.26196255894;RFX2..5_RFXANK_RFXAP:1.17325116111;HIF1A:1.17160565276;GLI1..3:1.05569693326;FOS_FOS{B,L1}_JUN{B,D}:1.05114850891;HMX1:1.03568823659;NFE2L1:0.957370172476;BACH2:0.953163738115;VSX1,2:0.928800602254;TBX4,5:0.907907566217;ETS1,2:0.906882294936;POU5F1:0.881820314628;SREBF1,2:0.880819468848;NKX2-2,8:0.830751384138;FOX{F1,F2,J1}:0.786914184457;MAFB:0.754257232517;ATF6:0.721772835661;ELF1,2,4:0.693047578288;NFIL3:0.679423133682;STAT1,3:0.677248041132;TBP:0.66335070091;FOXQ1:0.601783191253;ESRRA:0.583431032283;ZEB1:0.557789534686;CDX1,2,4:0.542741970724;IRF1,2:0.526105547827;EP300:0.525080993656;AHR_ARNT_ARNT2:0.503909137782;NFATC1..3:0.500457674684;BPTF:0.496973451642;NFE2:0.479796635506;EGR1..3:0.420997619836;NKX6-1,2:0.419128439715;FOX{D1,D2}:0.412752530643;PAX6:0.410468000128;POU1F1:0.368130530132;MYB:0.367421847657;EN1,2:0.330742930556;HOXA9_MEIS1:0.292465023893;ZBTB16:0.284826477479;NFE2L2:0.28188244534;SNAI1..3:0.26620807142;NANOG:0.252809582937;POU2F1..3:0.241067549419;PAX3,7:0.234714057725;CUX2:0.193024024472;NKX3-1:0.176231802048;STAT5{A,B}:0.157839394287;IRF7:0.15541171206;FOXA2:0.0925103932118;CEBPA,B_DDIT3:0.0922297293742;SOX2:0.0863550623262;RORA:0.083388973047;POU3F1..4:0.0736517033435;MED-1{core}:0.0623145230109;ALX1:0.043908559981;E2F1..5:0.0411399443718;HBP1_HMGB_SSRP1_UBTF:0.0225513458728;PAX8:0.000990719537141;SOX17:-0.0349581655987;PPARG:-0.0711938354221;SMAD1..7,9:-0.0771757788933;TFDP1:-0.091122322026;STAT2,4,6:-0.0952160930266;AIRE:-0.102403626266;ZBTB6:-0.130116919932;HES1:-0.143850916482;SPZ1:-0.212588079711;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214230617139;MYFfamily:-0.217914528193;TFAP2{A,C}:-0.238366694187;FOXP1:-0.25351030248;MYOD1:-0.268625670175;MEF2{A,B,C,D}:-0.273242536004;ALX4:-0.274275517669;ZFP161:-0.282367743042;NKX2-1,4:-0.289785915455;NKX3-2:-0.29338688297;HNF4A_NR2F1,2:-0.303007332871;OCT4_SOX2{dimer}:-0.320211067503;ELK1,4_GABP{A,B1}:-0.339850602097;HOX{A5,B5}:-0.340119907573;RFX1:-0.350401118323;NFY{A,B,C}:-0.354514297578;XBP1:-0.36973807903;SRF:-0.387427002247;TP53:-0.388767712538;PAX1,9:-0.398051062461;GCM1,2:-0.400043312334;CDC5L:-0.404183861838;PAX4:-0.406724137985;BREu{core}:-0.408354460699;IKZF2:-0.414236476569;SP1:-0.433335090376;NFIX:-0.439150915752;LMO2:-0.474562838532;HLF:-0.49602763214;CRX:-0.496040386498;HNF1A:-0.506588154445;MZF1:-0.518371126688;HMGA1,2:-0.520086374859;MAZ:-0.540361012513;GATA6:-0.545040155276;LHX3,4:-0.553616358641;HAND1,2:-0.556294293729;PAX5:-0.5664352791;ZIC1..3:-0.592773197822;TAL1_TCF{3,4,12}:-0.610838869047;NKX2-3_NKX2-5:-0.62829215833;PITX1..3:-0.645536679012;MYBL2:-0.668574336263;NR3C1:-0.680800763547;ESR1:-0.724096383956;GFI1:-0.727612577823;ZNF148:-0.745758638031;NHLH1,2:-0.756798564864;RXRA_VDR{dimer}:-0.777936977711;EVI1:-0.780324085172;PRRX1,2:-0.782259809346;TFCP2:-0.827193523834;MTE{core}:-0.834971558643;SOX5:-0.838787305812;YY1:-0.862232991649;FOXO1,3,4:-0.865770917329;NR5A1,2:-0.902804382597;GTF2A1,2:-0.925340665651;TEAD1:-0.944622860919;SOX{8,9,10}:-0.951682054418;NR6A1:-0.953451477404;HIC1:-1.01762574642;AR:-1.02806621292;GFI1B:-1.08497279946;ONECUT1,2:-1.12095505684;NRF1:-1.12558879501;IKZF1:-1.13115719786;ZNF143:-1.13403556135;ARID5B:-1.13898846103;REST:-1.15312498726;POU6F1:-1.15372129536;GTF2I:-1.18846606837;TOPORS:-1.19300085696;FOXM1:-1.20902400059;PRDM1:-1.21187836784;HOX{A4,D4}:-1.2275389645;UFEwm:-1.2282311081;TLX1..3_NFIC{dimer}:-1.24284526586;FOX{I1,J2}:-1.24883473574;XCPE1{core}:-1.27371797816;EBF1:-1.27380113266;TFAP2B:-1.28251956042;MTF1:-1.28801698167;KLF4:-1.30081638555;ADNP_IRX_SIX_ZHX:-1.33019038329;FOXL1:-1.34117657551;PATZ1:-1.34589801124;TEF:-1.3730466976;GATA4:-1.39096656892;bHLH_family:-1.39663884457;RBPJ:-1.41009820565;RREB1:-1.44938251406;HOX{A6,A7,B6,B7}:-1.47782745819;ZNF384:-1.47897006037;NR1H4:-1.48868316554;FOXD3:-1.50263761374;LEF1_TCF7_TCF7L1,2:-1.52212644074;ZNF238:-1.56073258436;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.5630918707;GZF1:-1.68254241863;T:-1.74370365162;TFAP4:-1.77009894657;PBX1:-1.82039993493;PDX1:-1.89239819597;DBP:-1.98100329815;ZNF423:-2.22959281669;RXR{A,B,G}:-2.82674107891 | |top_motifs=NFKB1_REL_RELA:2.6578241477;CREB1:2.54825868468;ATF5_CREB3:2.50487662999;HSF1,2:2.32388151032;FOXN1:2.29992511255;JUN:2.09523632546;ATF4:2.09466218661;NANOG{mouse}:2.01863221224;TLX2:1.98585492075;SPI1:1.62589858563;PAX2:1.56050380238;FOXP3:1.54094506879;FOSL2:1.48397540523;SPIB:1.48350992749;RUNX1..3:1.42662025206;DMAP1_NCOR{1,2}_SMARC:1.28984636052;TGIF1:1.28149331303;ATF2:1.26196255894;RFX2..5_RFXANK_RFXAP:1.17325116111;HIF1A:1.17160565276;GLI1..3:1.05569693326;FOS_FOS{B,L1}_JUN{B,D}:1.05114850891;HMX1:1.03568823659;NFE2L1:0.957370172476;BACH2:0.953163738115;VSX1,2:0.928800602254;TBX4,5:0.907907566217;ETS1,2:0.906882294936;POU5F1:0.881820314628;SREBF1,2:0.880819468848;NKX2-2,8:0.830751384138;FOX{F1,F2,J1}:0.786914184457;MAFB:0.754257232517;ATF6:0.721772835661;ELF1,2,4:0.693047578288;NFIL3:0.679423133682;STAT1,3:0.677248041132;TBP:0.66335070091;FOXQ1:0.601783191253;ESRRA:0.583431032283;ZEB1:0.557789534686;CDX1,2,4:0.542741970724;IRF1,2:0.526105547827;EP300:0.525080993656;AHR_ARNT_ARNT2:0.503909137782;NFATC1..3:0.500457674684;BPTF:0.496973451642;NFE2:0.479796635506;EGR1..3:0.420997619836;NKX6-1,2:0.419128439715;FOX{D1,D2}:0.412752530643;PAX6:0.410468000128;POU1F1:0.368130530132;MYB:0.367421847657;EN1,2:0.330742930556;HOXA9_MEIS1:0.292465023893;ZBTB16:0.284826477479;NFE2L2:0.28188244534;SNAI1..3:0.26620807142;NANOG:0.252809582937;POU2F1..3:0.241067549419;PAX3,7:0.234714057725;CUX2:0.193024024472;NKX3-1:0.176231802048;STAT5{A,B}:0.157839394287;IRF7:0.15541171206;FOXA2:0.0925103932118;CEBPA,B_DDIT3:0.0922297293742;SOX2:0.0863550623262;RORA:0.083388973047;POU3F1..4:0.0736517033435;MED-1{core}:0.0623145230109;ALX1:0.043908559981;E2F1..5:0.0411399443718;HBP1_HMGB_SSRP1_UBTF:0.0225513458728;PAX8:0.000990719537141;SOX17:-0.0349581655987;PPARG:-0.0711938354221;SMAD1..7,9:-0.0771757788933;TFDP1:-0.091122322026;STAT2,4,6:-0.0952160930266;AIRE:-0.102403626266;ZBTB6:-0.130116919932;HES1:-0.143850916482;SPZ1:-0.212588079711;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.214230617139;MYFfamily:-0.217914528193;TFAP2{A,C}:-0.238366694187;FOXP1:-0.25351030248;MYOD1:-0.268625670175;MEF2{A,B,C,D}:-0.273242536004;ALX4:-0.274275517669;ZFP161:-0.282367743042;NKX2-1,4:-0.289785915455;NKX3-2:-0.29338688297;HNF4A_NR2F1,2:-0.303007332871;OCT4_SOX2{dimer}:-0.320211067503;ELK1,4_GABP{A,B1}:-0.339850602097;HOX{A5,B5}:-0.340119907573;RFX1:-0.350401118323;NFY{A,B,C}:-0.354514297578;XBP1:-0.36973807903;SRF:-0.387427002247;TP53:-0.388767712538;PAX1,9:-0.398051062461;GCM1,2:-0.400043312334;CDC5L:-0.404183861838;PAX4:-0.406724137985;BREu{core}:-0.408354460699;IKZF2:-0.414236476569;SP1:-0.433335090376;NFIX:-0.439150915752;LMO2:-0.474562838532;HLF:-0.49602763214;CRX:-0.496040386498;HNF1A:-0.506588154445;MZF1:-0.518371126688;HMGA1,2:-0.520086374859;MAZ:-0.540361012513;GATA6:-0.545040155276;LHX3,4:-0.553616358641;HAND1,2:-0.556294293729;PAX5:-0.5664352791;ZIC1..3:-0.592773197822;TAL1_TCF{3,4,12}:-0.610838869047;NKX2-3_NKX2-5:-0.62829215833;PITX1..3:-0.645536679012;MYBL2:-0.668574336263;NR3C1:-0.680800763547;ESR1:-0.724096383956;GFI1:-0.727612577823;ZNF148:-0.745758638031;NHLH1,2:-0.756798564864;RXRA_VDR{dimer}:-0.777936977711;EVI1:-0.780324085172;PRRX1,2:-0.782259809346;TFCP2:-0.827193523834;MTE{core}:-0.834971558643;SOX5:-0.838787305812;YY1:-0.862232991649;FOXO1,3,4:-0.865770917329;NR5A1,2:-0.902804382597;GTF2A1,2:-0.925340665651;TEAD1:-0.944622860919;SOX{8,9,10}:-0.951682054418;NR6A1:-0.953451477404;HIC1:-1.01762574642;AR:-1.02806621292;GFI1B:-1.08497279946;ONECUT1,2:-1.12095505684;NRF1:-1.12558879501;IKZF1:-1.13115719786;ZNF143:-1.13403556135;ARID5B:-1.13898846103;REST:-1.15312498726;POU6F1:-1.15372129536;GTF2I:-1.18846606837;TOPORS:-1.19300085696;FOXM1:-1.20902400059;PRDM1:-1.21187836784;HOX{A4,D4}:-1.2275389645;UFEwm:-1.2282311081;TLX1..3_NFIC{dimer}:-1.24284526586;FOX{I1,J2}:-1.24883473574;XCPE1{core}:-1.27371797816;EBF1:-1.27380113266;TFAP2B:-1.28251956042;MTF1:-1.28801698167;KLF4:-1.30081638555;ADNP_IRX_SIX_ZHX:-1.33019038329;FOXL1:-1.34117657551;PATZ1:-1.34589801124;TEF:-1.3730466976;GATA4:-1.39096656892;bHLH_family:-1.39663884457;RBPJ:-1.41009820565;RREB1:-1.44938251406;HOX{A6,A7,B6,B7}:-1.47782745819;ZNF384:-1.47897006037;NR1H4:-1.48868316554;FOXD3:-1.50263761374;LEF1_TCF7_TCF7L1,2:-1.52212644074;ZNF238:-1.56073258436;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.5630918707;GZF1:-1.68254241863;T:-1.74370365162;TFAP4:-1.77009894657;PBX1:-1.82039993493;PDX1:-1.89239819597;DBP:-1.98100329815;ZNF423:-2.22959281669;RXR{A,B,G}:-2.82674107891 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11904-125F5;search_select_hide=table117:FF:11904-125F5 | |||
}} | }} |
Latest revision as of 18:28, 4 June 2020
Name: | immature langerhans cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13537 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13537
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13537
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.339 |
10 | 10 | 0.0186 |
100 | 100 | 0.358 |
101 | 101 | 0.561 |
102 | 102 | 0.657 |
103 | 103 | 0.0465 |
104 | 104 | 0.669 |
105 | 105 | 0.482 |
106 | 106 | 4.93165e-4 |
107 | 107 | 0.734 |
108 | 108 | 0.771 |
109 | 109 | 0.364 |
11 | 11 | 0.779 |
110 | 110 | 0.825 |
111 | 111 | 0.684 |
112 | 112 | 0.128 |
113 | 113 | 0.738 |
114 | 114 | 0.705 |
115 | 115 | 0.0642 |
116 | 116 | 0.412 |
117 | 117 | 0.12 |
118 | 118 | 0.322 |
119 | 119 | 0.887 |
12 | 12 | 0.506 |
120 | 120 | 0.71 |
121 | 121 | 0.265 |
122 | 122 | 0.176 |
123 | 123 | 0.67 |
124 | 124 | 0.582 |
125 | 125 | 0.329 |
126 | 126 | 0.0129 |
127 | 127 | 0.39 |
128 | 128 | 0.277 |
129 | 129 | 0.748 |
13 | 13 | 0.0101 |
130 | 130 | 0.938 |
131 | 131 | 0.722 |
132 | 132 | 0.0197 |
133 | 133 | 0.173 |
134 | 134 | 0.464 |
135 | 135 | 0.361 |
136 | 136 | 0.129 |
137 | 137 | 0.00102 |
138 | 138 | 0.791 |
139 | 139 | 0.549 |
14 | 14 | 0.975 |
140 | 140 | 0.0514 |
141 | 141 | 0.573 |
142 | 142 | 0.981 |
143 | 143 | 0.316 |
144 | 144 | 0.516 |
145 | 145 | 0.259 |
146 | 146 | 0.382 |
147 | 147 | 0.0796 |
148 | 148 | 0.00733 |
149 | 149 | 0.202 |
15 | 15 | 0.272 |
150 | 150 | 0.231 |
151 | 151 | 0.538 |
152 | 152 | 0.241 |
153 | 153 | 0.353 |
154 | 154 | 0.204 |
155 | 155 | 0.0541 |
156 | 156 | 0.521 |
157 | 157 | 0.456 |
158 | 158 | 0.144 |
159 | 159 | 0.298 |
16 | 16 | 0.806 |
160 | 160 | 0.258 |
161 | 161 | 0.669 |
162 | 162 | 0.0574 |
163 | 163 | 0.158 |
164 | 164 | 0.098 |
165 | 165 | 0.17 |
166 | 166 | 0.154 |
167 | 167 | 0.763 |
168 | 168 | 0.467 |
169 | 169 | 0.871 |
17 | 17 | 0.637 |
18 | 18 | 0.692 |
19 | 19 | 0.529 |
2 | 2 | 0.442 |
20 | 20 | 0.083 |
21 | 21 | 0.613 |
22 | 22 | 0.578 |
23 | 23 | 0.415 |
24 | 24 | 0.108 |
25 | 25 | 0.295 |
26 | 26 | 0.525 |
27 | 27 | 0.148 |
28 | 28 | 0.497 |
29 | 29 | 0.0775 |
3 | 3 | 0.482 |
30 | 30 | 0.703 |
31 | 31 | 0.549 |
32 | 32 | 0.00985 |
33 | 33 | 0.0901 |
34 | 34 | 0.549 |
35 | 35 | 0.356 |
36 | 36 | 0.281 |
37 | 37 | 0.199 |
38 | 38 | 0.739 |
39 | 39 | 0.793 |
4 | 4 | 0.679 |
40 | 40 | 0.703 |
41 | 41 | 0.223 |
42 | 42 | 0.543 |
43 | 43 | 0.261 |
44 | 44 | 0.412 |
45 | 45 | 0.952 |
46 | 46 | 0.75 |
47 | 47 | 0.702 |
48 | 48 | 0.814 |
49 | 49 | 0.283 |
5 | 5 | 0.542 |
50 | 50 | 0.987 |
51 | 51 | 0.529 |
52 | 52 | 0.165 |
53 | 53 | 0.948 |
54 | 54 | 0.884 |
55 | 55 | 0.908 |
56 | 56 | 0.579 |
57 | 57 | 0.867 |
58 | 58 | 0.18 |
59 | 59 | 0.573 |
6 | 6 | 0.805 |
60 | 60 | 0.131 |
61 | 61 | 0.942 |
62 | 62 | 0.264 |
63 | 63 | 0.866 |
64 | 64 | 0.737 |
65 | 65 | 0.856 |
66 | 66 | 0.732 |
67 | 67 | 0.934 |
68 | 68 | 0.0822 |
69 | 69 | 0.0151 |
7 | 7 | 0.21 |
70 | 70 | 0.585 |
71 | 71 | 0.0555 |
72 | 72 | 0.0183 |
73 | 73 | 0.247 |
74 | 74 | 0.115 |
75 | 75 | 0.183 |
76 | 76 | 0.0679 |
77 | 77 | 0.617 |
78 | 78 | 0.00608 |
79 | 79 | 0.773 |
8 | 8 | 0.396 |
80 | 80 | 0.97 |
81 | 81 | 0.489 |
82 | 82 | 0.605 |
83 | 83 | 0.0148 |
84 | 84 | 0.0632 |
85 | 85 | 0.243 |
86 | 86 | 0.0632 |
87 | 87 | 0.137 |
88 | 88 | 0.182 |
89 | 89 | 0.622 |
9 | 9 | 0.796 |
90 | 90 | 0.0312 |
91 | 91 | 0.5 |
92 | 92 | 0.395 |
93 | 93 | 0.39 |
94 | 94 | 0.161 |
95 | 95 | 0.26 |
96 | 96 | 0.267 |
97 | 97 | 0.581 |
98 | 98 | 0.531 |
99 | 99 | 8.16441e-5 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13537
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000990 (conventional dendritic cell)
0000255 (eukaryotic cell)
0000451 (dendritic cell)
0000453 (Langerhans cell)
0000840 (immature conventional dendritic cell)
0001014 (CD1a-positive Langerhans cell)
0001016 (immature CD1a-positive Langerhans cell)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011135 (human immature langerhans cells sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)