FF:11912-125G4: Difference between revisions

Latest revision as of 18:29, 4 June 2020

Name:	CD14+CD16+ Monocytes, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13549
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	monocyte
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	45-46
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005092

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13549		CAGE		DRX008164		DRR009036

Accession ID Hg19

Library id		BAM		CTSS
CNhs13549		DRZ000461		DRZ001846

Accession ID Hg38

Library id		BAM		CTSS
CNhs13549		DRZ011811		DRZ013196

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.0827
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.132
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0827
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.33
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0827
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.152
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0827
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.454
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.152
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.311
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.114
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.439
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.204
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.253
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.837
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.152
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.264
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.311
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.0827
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0948
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.533
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.879
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.659
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.425
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.639
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.571
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.212
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.705
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.152
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.491
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.62
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.486
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.795
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.076
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0827
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.354
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.987
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.533
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.471
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.152
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.0827
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.264
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.428
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.741
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13549

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.97897e-9
MA0003.1	MA0003.1	0.0746
MA0004.1	MA0004.1	0.276
MA0006.1	MA0006.1	0.798
MA0007.1	MA0007.1	0.937
MA0009.1	MA0009.1	0.446
MA0014.1	MA0014.1	0.442
MA0017.1	MA0017.1	0.00843
MA0018.2	MA0018.2	0.022
MA0019.1	MA0019.1	0.733
MA0024.1	MA0024.1	0.00635
MA0025.1	MA0025.1	6.12069e-5
MA0027.1	MA0027.1	0.729
MA0028.1	MA0028.1	0.428
MA0029.1	MA0029.1	0.176
MA0030.1	MA0030.1	0.243
MA0031.1	MA0031.1	0.539
MA0035.2	MA0035.2	0.505
MA0038.1	MA0038.1	0.394
MA0039.2	MA0039.2	0.432
MA0040.1	MA0040.1	0.269
MA0041.1	MA0041.1	0.924
MA0042.1	MA0042.1	0.139
MA0043.1	MA0043.1	9.58836e-7
MA0046.1	MA0046.1	0.0416
MA0047.2	MA0047.2	0.133
MA0048.1	MA0048.1	0.839
MA0050.1	MA0050.1	1.83373e-12
MA0051.1	MA0051.1	3.27243e-6
MA0052.1	MA0052.1	0.0235
MA0055.1	MA0055.1	0.77
MA0057.1	MA0057.1	0.681
MA0058.1	MA0058.1	0.127
MA0059.1	MA0059.1	0.247
MA0060.1	MA0060.1	7.50323e-6
MA0061.1	MA0061.1	3.64207e-8
MA0062.2	MA0062.2	4.61845e-5
MA0065.2	MA0065.2	0.00668
MA0066.1	MA0066.1	0.0458
MA0067.1	MA0067.1	2.70449e-5
MA0068.1	MA0068.1	0.773
MA0069.1	MA0069.1	0.738
MA0070.1	MA0070.1	0.00379
MA0071.1	MA0071.1	0.123
MA0072.1	MA0072.1	0.526
MA0073.1	MA0073.1	0.37
MA0074.1	MA0074.1	0.318
MA0076.1	MA0076.1	0.356
MA0077.1	MA0077.1	0.0938
MA0078.1	MA0078.1	0.986
MA0079.2	MA0079.2	0.499
MA0080.2	MA0080.2	1.28657e-15
MA0081.1	MA0081.1	6.19081e-5
MA0083.1	MA0083.1	0.845
MA0084.1	MA0084.1	0.372
MA0087.1	MA0087.1	0.357
MA0088.1	MA0088.1	0.653
MA0090.1	MA0090.1	0.0428
MA0091.1	MA0091.1	0.698
MA0092.1	MA0092.1	0.574
MA0093.1	MA0093.1	0.309
MA0099.2	MA0099.2	5.7304e-11
MA0100.1	MA0100.1	0.9
MA0101.1	MA0101.1	6.47375e-9
MA0102.2	MA0102.2	3.8747e-9
MA0103.1	MA0103.1	0.123
MA0104.2	MA0104.2	0.196
MA0105.1	MA0105.1	3.25902e-9
MA0106.1	MA0106.1	0.71
MA0107.1	MA0107.1	1.34901e-10
MA0108.2	MA0108.2	7.9364e-5
MA0111.1	MA0111.1	0.452
MA0112.2	MA0112.2	2.43821e-4
MA0113.1	MA0113.1	0.846
MA0114.1	MA0114.1	0.0614
MA0115.1	MA0115.1	0.867
MA0116.1	MA0116.1	1.58021e-4
MA0117.1	MA0117.1	0.173
MA0119.1	MA0119.1	0.458
MA0122.1	MA0122.1	0.823
MA0124.1	MA0124.1	0.266
MA0125.1	MA0125.1	0.235
MA0131.1	MA0131.1	0.987
MA0135.1	MA0135.1	0.446
MA0136.1	MA0136.1	6.89987e-19
MA0137.2	MA0137.2	0.404
MA0138.2	MA0138.2	0.839
MA0139.1	MA0139.1	0.911
MA0140.1	MA0140.1	0.57
MA0141.1	MA0141.1	0.0187
MA0142.1	MA0142.1	0.442
MA0143.1	MA0143.1	0.841
MA0144.1	MA0144.1	0.272
MA0145.1	MA0145.1	0.204
MA0146.1	MA0146.1	0.0736
MA0147.1	MA0147.1	0.276
MA0148.1	MA0148.1	0.393
MA0149.1	MA0149.1	0.106
MA0150.1	MA0150.1	8.53738e-6
MA0152.1	MA0152.1	0.189
MA0153.1	MA0153.1	0.00876
MA0154.1	MA0154.1	0.00166
MA0155.1	MA0155.1	0.762
MA0156.1	MA0156.1	3.71559e-13
MA0157.1	MA0157.1	0.286
MA0159.1	MA0159.1	0.0352
MA0160.1	MA0160.1	0.00728
MA0162.1	MA0162.1	0.505
MA0163.1	MA0163.1	4.07237e-10
MA0164.1	MA0164.1	0.929
MA0258.1	MA0258.1	0.00968
MA0259.1	MA0259.1	0.833

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13549

Novel motif	Logo	P-value
1	1	0.133
10	10	0.03
100	100	0.887
101	101	0.609
102	102	0.649
103	103	0.298
104	104	0.535
105	105	0.147
106	106	0.00917
107	107	0.665
108	108	0.672
109	109	0.049
11	11	0.214
110	110	0.195
111	111	0.0506
112	112	0.28
113	113	0.438
114	114	0.0154
115	115	0.119
116	116	0.985
117	117	0.0292
118	118	0.107
119	119	0.421
12	12	0.292
120	120	0.777
121	121	0.716
122	122	0.581
123	123	0.0303
124	124	0.622
125	125	0.216
126	126	0.122
127	127	0.374
128	128	0.0757
129	129	0.997
13	13	0.0616
130	130	0.288
131	131	0.826
132	132	0.0262
133	133	0.491
134	134	0.73
135	135	0.089
136	136	0.739
137	137	1.15479e-4
138	138	0.272
139	139	0.0652
14	14	0.393
140	140	0.228
141	141	0.506
142	142	0.465
143	143	0.0733
144	144	0.846
145	145	0.572
146	146	0.996
147	147	0.596
148	148	0.0141
149	149	0.812
15	15	0.13
150	150	0.603
151	151	0.354
152	152	0.288
153	153	0.855
154	154	0.806
155	155	0.251
156	156	0.877
157	157	0.889
158	158	0.12
159	159	0.209
16	16	0.465
160	160	0.422
161	161	0.438
162	162	0.343
163	163	0.802
164	164	0.1
165	165	0.0729
166	166	0.677
167	167	0.185
168	168	0.266
169	169	0.012
17	17	0.263
18	18	0.175
19	19	0.349
2	2	0.867
20	20	0.437
21	21	0.662
22	22	0.218
23	23	0.222
24	24	0.245
25	25	0.171
26	26	0.0472
27	27	0.686
28	28	0.503
29	29	0.0897
3	3	0.104
30	30	0.434
31	31	0.679
32	32	0.575
33	33	0.161
34	34	0.572
35	35	0.182
36	36	0.0289
37	37	0.0618
38	38	0.469
39	39	0.809
4	4	0.729
40	40	0.0592
41	41	0.0195
42	42	0.312
43	43	0.0744
44	44	0.899
45	45	0.911
46	46	0.172
47	47	0.522
48	48	0.496
49	49	0.142
5	5	0.103
50	50	0.978
51	51	0.381
52	52	0.386
53	53	0.315
54	54	0.509
55	55	0.65
56	56	0.873
57	57	0.864
58	58	0.0754
59	59	0.188
6	6	0.703
60	60	0.0464
61	61	0.272
62	62	0.0342
63	63	0.534
64	64	0.353
65	65	0.32
66	66	0.215
67	67	0.318
68	68	0.68
69	69	0.918
7	7	0.134
70	70	0.0258
71	71	0.0258
72	72	0.2
73	73	0.121
74	74	0.0975
75	75	0.0692
76	76	0.213
77	77	0.607
78	78	0.161
79	79	0.423
8	8	0.429
80	80	0.167
81	81	0.233
82	82	0.24
83	83	0.15
84	84	0.68
85	85	0.0394
86	86	0.126
87	87	0.204
88	88	0.576
89	89	0.476
9	9	0.281
90	90	0.132
91	91	0.396
92	92	0.465
93	93	0.291
94	94	0.0225
95	95	0.0615
96	96	0.446
97	97	0.838
98	98	0.0915
99	99	0.0239

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13549

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011112 CD14-positiveCD16-positive Monocytes

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0002393 (intermediate monocyte)
0002397 (CD14-positive, CD16-positive monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011112 (CD14-positiveCD16-positive Monocytes)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005092
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0002393,CL:0000566,CL:0002397,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008164;DRR009036;DRZ000461;DRZ001846;DRZ011811;DRZ013196
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0002393,CL:0002397
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011112
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.73!535.89!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.60!401.29!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.31!203.16!IRF8;;chr7:50344289..50344323,+!p1@IKZF1!2.19!152.84!IKZF1;;chr12:54778471..54778528,-!p1@ZNF385A!1.94!86.80!ZNF385A;;chr11:47400062..47400077,-!p2@SPI1!1.94!85.75!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.86!71.49!SPI1;;chr14:75745523..75745537,+!p1@FOS!1.70!5479.22!FOS;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!46.96!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.64!42.56!TFEC;;chr2:145277640..145277771,-!p1@ZEB2!1.63!530.86!ZEB2;;chr2:145271342..145271377,-!p5@ZEB2!1.60!38.58!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.59!37.53!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.56!401.50!MAFB;;chr11:47400032..47400043,-!p5@SPI1!1.56!35.01!SPI1;;chr19:13213662..13213686,-!p1@LYL1!1.52!46.75!LYL1;;chr7:128577972..128578047,+!p1@IRF5!1.51!49.27!IRF5;;chr11:47400045..47400060,-!p6@SPI1!1.50!30.40!SPI1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.39!32.71!NFKBIZ;;chrX:106960180..106960197,-!p2@TSC22D3!1.38!86.38!TSC22D3;;chr5:88178983..88179012,-!p1@MEF2C!1.35!160.60!MEF2C;;chr7:50343634..50343717,+!p2@IKZF1!1.35!21.39!IKZF1;;chr1:212873084..212873137,-!p2@BATF3!1.35!21.39!BATF3;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.18!SPI1;;chr9:110252035..110252057,-!p1@KLF4!1.34!326.02!KLF4;;chr12:54694758..54694805,-!p1@NFE2!1.34!25.37!NFE2;;chr19:33793430..33793447,-!p1@CEBPA!1.33!83.44!CEBPA;;chr9:110250697..110250738,-!p2@KLF4!1.32!23.48!KLF4;;chr19:45971246..45971265,+!p1@FOSB!1.31!349.92!FOSB;;chr10:51572408..51572454,+!p3@NCOA4!1.31!111.12!NCOA4;;chr5:176735063..176735088,-!p2@MXD3!1.29!18.45!MXD3;;chr14:75746722..75746777,+!p2@FOS!1.26!22.22!FOS;;chr1:25256756..25256774,-!p1@RUNX3!1.25!31.66!RUNX3;;chr2:208394817..208394834,+!p3@CREB1!1.23!63.74!CREB1;;chr20:48807456..48807475,+!p3@CEBPB!1.22!29.77!CEBPB;;chr12:72056800..72056834,+!p1@THAP2!1.22!21.18!THAP2;;chr2:68592394..68592405,+!p2@PLEK!1.22!15.72!PLEK;;chr6:144385698..144385742,-!p2@PLAGL1!1.21!18.66!PLAGL1;;chr14:35872962..35873025,-!p3@NFKBIA!1.20!37.53!NFKBIA;;chr19:16435625..16435682,+!p1@KLF2!1.18!449.30!KLF2;;chr2:28618532..28618610,+!p4@FOSL2!1.18!24.11!FOSL2;;chr10:94449703..94449718,+!p1@HHEX!1.17!53.25!HHEX;;chr19:42636586..42636607,-!p1@POU2F2!1.16!37.11!POU2F2;;chr10:3827371..3827386,-!p2@KLF6!1.15!108.81!KLF6;;chr10:35416142..35416169,+!p3@CREM!1.14!33.76!CREM;;chrY:21906594..21906622,-!p1@KDM5D!1.13!12.58!KDM5D;;chr10:104154246..104154347,+!p3@NFKB2!1.12!74.22!NFKB2;;chr2:157189180..157189290,-!p1@NR4A2!1.12!62.90!NR4A2;;chr19:12902289..12902307,+!p1@JUNB!1.11!2733.95!JUNB;;chr5:131826457..131826514,-!p1@IRF1!1.11!469.01!IRF1;;chr11:128563948..128564003,+!p1@FLI1!1.10!139.84!FLI1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.09!586.62!NFKBIZ;;chr7:50344251..50344288,+!p3@IKZF1!1.09!11.32!IKZF1;;chr14:35873947..35873965,-!p1@NFKBIA!1.08!695.02!NFKBIA;;chr2:70142232..70142251,+!p1@MXD1!1.08!61.85!MXD1;;chr4:185395590..185395627,-!p3@IRF2!1.08!13.84!IRF2;;chr2:231090433..231090469,+!p1@SP140!1.08!11.11!SP140;;chr2:61108695..61108753,+!p1@REL!1.07!74.22!REL;;chr16:31885093..31885165,+!p1@ZNF267!1.06!162.90!ZNF267;;chr21:30671690..30671762,+!p2@BACH1!1.06!36.27!BACH1;;chr4:185395633..185395651,-!p2@IRF2!1.06!16.77!IRF2;;chr6:44233252..44233296,-!p1@NFKBIE!1.04!100.43!NFKBIE;;chrX:106960221..106960236,-!p3@TSC22D3!1.04!28.09!TSC22D3;;chr17:38497662..38497713,+!p4@RARA!1.04!11.53!RARA;;chr10:31288398..31288455,-!p2@ZNF438!1.04!11.53!ZNF438;;chr6:106534192..106534224,+!p1@PRDM1!1.02!27.47!PRDM1;;chr1:25256439..25256476,-!p3@RUNX3!1.02!9.43!RUNX3;;chr14:64971288..64971316,-!p2@ZBTB25!0.99!27.88!ZBTB25;;chr4:106068026..106068084,+!p1@TET2!0.98!79.25!TET2;;chr6:106534230..106534254,+!p2@PRDM1!0.97!21.39!PRDM1;;chr2:208031943..208031978,-!p5@KLF7!0.97!11.32!KLF7;;chr20:56195474..56195506,-!p1@ZBP1!0.97!8.39!ZBP1;;chr12:52445218..52445237,+!p1@NR4A1!0.96!105.88!NR4A1;;chr2:208031542..208031595,-!p2@KLF7!0.96!59.75!KLF7;;chr13:41593425..41593480,-!p1@ELF1!0.96!53.46!ELF1;;chr20:48807430..48807439,+!p8@CEBPB!0.96!12.37!CEBPB;;chr19:50432132..50432217,+!p2@ATF5!0.96!9.64!ATF5;;chr6:391743..391759,+!p1@IRF4!0.96!8.18!IRF4;;chr12:72056773..72056796,+!p3@THAP2!0.94!10.06!THAP2;;chr5:88179017..88179046,-!p2@MEF2C!0.93!31.45!MEF2C;;chr1:40367530..40367597,-!p1@MYCL1!0.93!13.84!MYCL1;;chr9:110251836..110251887,-!p4@KLF4!0.93!10.06!KLF4;;chrY:2803415..2803468,+!p1@ZFY!0.93!7.55!ZFY;;chr21:34442439..34442455,+!p1@OLIG1!0.93!7.55!OLIG1;;chr4:83822199..83822239,+!p2@THAP9!0.92!8.81!THAP9;;chr4:103423079..103423112,+!p4@NFKB1!0.92!7.34!NFKB1;;chr6:12011943..12012015,+!p2@HIVEP1!0.91!23.69!HIVEP1;;chr9:110252074..110252079,-!p3@KLF4!0.91!11.95!KLF4;;chr8:48650697..48650708,-!p2@CEBPD!0.90!54.72!CEBPD;;chr2:238600933..238600985,+!p3@LRRFIP1!0.90!39.63!LRRFIP1;;chr2:157198916..157198978,-!p2@NR4A2!0.90!25.58!NR4A2;;chr19:13213704..13213726,-!p3@LYL1!0.90!9.43!LYL1;;chr13:41593392..41593403,-!p7@ELF1!0.90!6.92!ELF1;;chrX:106960285..106960299,-!p1@TSC22D3!0.89!193.31!TSC22D3;;chr10:104155480..104155534,+!p2@NFKB2!0.89!46.54!NFKB2;;chr10:114709999..114710031,+!p1@TCF7L2!0.88!166.05!TCF7L2;;chr10:114710098..114710130,+!p2@TCF7L2!0.88!52.00!TCF7L2;;chr10:94449675..94449694,+!p2@HHEX!0.88!18.24!HHEX;;chr10:51572339..51572376,+!p4@NCOA4!0.87!15.10!NCOA4;;chr10:64576105..64576133,-!p1@EGR2!0.87!13.63!EGR2;;chr2:185463247..185463263,+!p1@ZNF804A!0.87!11.74!ZNF804A;;chrX:106960249..106960260,-!p5@TSC22D3!0.87!10.48!TSC22D3;;chr19:45972701..45972774,+!p2@FOSB!0.87!9.02!FOSB;;chr8:81397876..81397898,+!p5@ZBTB10!0.87!7.76!ZBTB10;;chr2:8822176..8822196,+!p1@ID2!0.86!921.66!ID2;;chr17:38498594..38498661,+!p2@RARA!0.86!22.01!RARA;;chr2:145277882..145277967,-!p3@ZEB2!0.86!11.11!ZEB2;;chr8:48650715..48650735,-!p1@CEBPD!0.85!833.60!CEBPD;;chr20:48807351..48807384,+!p1@CEBPB!0.85!657.07!CEBPB;;chr17:38498402..38498445,+!p3@RARA!0.85!23.27!RARA;;chr18:3448455..3448480,+!p5@TGIF1!0.85!11.53!TGIF1;;chr2:61108808..61108821,+!p3@REL!0.85!7.76!REL;;chr9:117150254..117150271,-!p1@AKNA!0.84!16.98!AKNA;;chr16:3313791..3313834,+!p2@ZNF263!0.84!13.84!ZNF263;;chr11:615942..615957,-!p1@IRF7!0.83!58.70!IRF7;;chr19:45579725..45579743,-!p1@ZNF296!0.83!27.88!ZNF296;;chr8:81397846..81397860,+!p3@ZBTB10!0.83!7.34!ZBTB10;;chr11:47279504..47279563,+!p1@NR1H3!0.82!13.42!NR1H3;;chr5:142782823..142782854,-!p3@NR3C1!0.82!8.18!NR3C1;;chr14:75988771..75988826,+!p1@BATF!0.82!7.76!BATF;;chr21:30671235..30671253,+!p1@BACH1!0.81!75.90!BACH1;;chr1:158979872..158979898,+!p3@IFI16!0.81!17.82!IFI16;;chr9:102584262..102584276,+!p1@NR4A3!0.81!13.00!NR4A3;;chr4:185395191..185395226,-!p4@IRF2!0.81!7.76!IRF2;;chr2:238600998..238601013,+!p5@LRRFIP1!0.81!5.45!LRRFIP1;;chr19:45251395..45251432,+!p8@BCL3!0.81!5.45!BCL3;;chr21:30672433..30672464,+!p6@BACH1!0.81!5.45!BACH1;;chrX:129244454..129244488,-!p1@ELF4!0.80!41.51!ELF4;;chr7:149470641..149470694,-!p1@ZNF467!0.80!26.21!ZNF467;;chr14:35872453..35872485,-!p2@NFKBIA!0.80!14.05!NFKBIA;;chr10:104154415..104154434,+!p5@NFKB2!0.80!5.24!NFKB2;;chr1:212873061..212873080,-!p4@BATF3!0.80!5.24!BATF3;;chr2:231084659..231084721,-!p1@SP110!0.79!130.20!SP110;;chr14:45722360..45722415,-!p1@MIS18BP1!0.79!88.27!MIS18BP1;;chr2:97202480..97202499,+!p1@ARID5A!0.79!56.61!ARID5A;;chr4:38665769..38665801,+!p2@KLF3!0.79!50.74!KLF3;;chr10:43932296..43932360,+!p1@ZNF487P!0.79!11.32!ZNF487P;;chr12:72056749..72056767,+!p6@THAP2!0.79!5.87!THAP2;;chr19:36391434..36391450,-!p1@NFKBID!0.78!10.48!NFKBID;;chr7:28725715..28725727,+!p3@CREB5!0.78!6.08!CREB5;;chr7:17338324..17338341,+!p3@AHR!0.77!17.61!AHR;;chr9:137217986..137218049,+!p3@RXRA!0.77!15.10!RXRA;;chr12:54694807..54694832,-!p3@NFE2!0.77!4.82!NFE2;;chr19:45252008..45252024,+!p2@BCL3!0.76!17.19!BCL3;;chr19:45250948..45250998,+!p3@BCL3!0.76!12.79!BCL3;;chr20:48807648..48807671,+!p9@CEBPB!0.76!7.13!CEBPB;;chr1:212782094..212782109,+!p1@ATF3!0.75!140.05!ATF3;;chr21:36421535..36421610,-!p2@RUNX1!0.75!18.03!RUNX1;;chr13:41593405..41593416,-!p9@ELF1!0.75!4.61!ELF1;;chr12:57914286..57914304,-!p1@DDIT3!0.74!181.35!DDIT3;;chr20:48807875..48807982,+!p2@CEBPB!0.74!109.02!CEBPB;;chr9:117160738..117160782,-!p2@AKNA!0.74!20.34!AKNA;;chr2:60780753..60780800,-!p1@BCL11A!0.73!23.90!BCL11A;;chr14:64970670..64970712,-!p3@ZBTB25!0.73!10.06!ZBTB25;;chr8:71316428..71316459,-!p2@NCOA2!0.73!7.76!NCOA2;;chr7:137620684..137620711,-!p4@CREB3L2!0.73!4.40!CREB3L2;;chr10:135044190..135044229,+!p3@UTF1!0.73!4.40!UTF1;;chr2:231090471..231090504,+!p2@SP140!0.73!4.40!SP140;;chrX:129244430..129244442,-!p5@ELF4!0.73!4.40!ELF4;;chr19:13213954..13214021,-!p4@LYL1!0.73!4.40!LYL1;;chr8:37553292..37553317,+!p1@ZNF703!0.72!114.05!ZNF703;;chr4:38665810..38665827,+!p1@KLF3!0.72!70.03!KLF3;;chr7:28725740..28725778,+!p1@CREB5!0.72!42.98!CREB5;;chr3:39195075..39195088,-!p1@CSRNP1!0.72!29.56!CSRNP1;;chr2:145274981..145274994,-!p9@ZEB2!0.72!6.50!ZEB2;;chr1:44679370..44679422,+!p3@DMAP1!0.72!5.87!DMAP1;;chr2:145277632..145277638,-!p17@ZEB2!0.72!4.19!ZEB2;;chr6:170862932..170862947,+!p5@TBP!0.72!4.19!TBP;;chr7:77428066..77428132,+!p2@PHTF2!0.71!30.19!PHTF2;;chr16:88752889..88752921,-!p1@SNAI3!0.70!4.82!SNAI3;;chr14:75746340..75746368,+!p3@FOS!0.70!3.98!FOS;;chr10:31288370..31288393,-!p3@ZNF438!0.70!3.98!ZNF438;;chr11:2292226..2292270,-!p1@ASCL2!0.70!3.98!ASCL2;;chr2:174830564..174830605,-!p3@SP3!0.69!21.80!SP3;;chr6:41040923..41040952,+!p2@NFYA!0.69!11.32!NFYA;;chr1:45805693..45805718,+!p3@TOE1!0.69!9.02!TOE1;;chr18:3448422..3448439,+!p11@TGIF1!0.69!6.08!TGIF1;;chr6:15246261..15246312,+!p1@JARID2!0.68!106.30!JARID2;;chr5:172483347..172483407,+!p1@C5orf41!0.68!32.50!CREBRF;;chrX:101186981..101187030,-!p1@ZMAT1!0.68!13.84!ZMAT1;;chr6:15246200..15246214,+!p2@JARID2!0.68!11.74!JARID2;;chr20:48807779..48807802,+!p10@CEBPB!0.68!6.71!CEBPB;;chr14:75746781..75746799,+!p6@FOS!0.68!3.77!FOS;;chr22:21771656..21771662,+!p1@HIC2!0.68!3.77!HIC2;;chr3:101546918..101546929,+!p4@NFKBIZ!0.68!3.77!NFKBIZ;;chrX:129244840..129244881,-!p2@ELF4!0.67!15.93!ELF4;;chr21:3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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002397;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor3.CNhs13549.11912-125G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor3.CNhs13549.11912-125G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor3.CNhs13549.11912-125G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor3.CNhs13549.11912-125G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16%252b%2520Monocytes%252c%2520donor3.CNhs13549.11912-125G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11912-125G4
 |is_a=EFO:0002091;;FF:0011112
 |is_obsolete=
+|library_id=CNhs13549
+|library_id_phase_based=2:CNhs13549
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11912
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11912
 |name=CD14+CD16+ Monocytes, donor3
 |namespace=
@@ Line 46: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=125
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=2.259
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+|sample_category=primary cells
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=NFIL3:3.12719730705;SPIB:2.62339723665;SPI1:2.42393128399;IRF1,2:2.30008967059;NANOG{mouse}:2.2143711157;PAX2:2.03922649238;ETS1,2:1.99605557026;IRF7:1.88598859999;NFKB1_REL_RELA:1.864289723;RFX2..5_RFXANK_RFXAP:1.85243315379;ATF5_CREB3:1.80655080667;DMAP1_NCOR{1,2}_SMARC:1.77185220487;TGIF1:1.72634997667;RUNX1..3:1.65358048226;ELF1,2,4:1.64488740068;SREBF1,2:1.60261790433;MAFB:1.54406091413;ESRRA:1.40241771195;CEBPA,B_DDIT3:1.39389663534;EP300:1.39321617992;HMX1:1.36548142742;HES1:1.35279841883;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.34845443429;FOXP3:1.27398129818;CREB1:1.27273002165;ATF4:1.17468177826;HLF:1.17451287792;FOXO1,3,4:1.16475765657;FOXN1:1.13840996098;HIF1A:1.04056274746;FOX{D1,D2}:0.960723345974;FOSL2:0.840770908759;FOX{F1,F2,J1}:0.75849496215;GLI1..3:0.74956393873;BACH2:0.745975408831;RXRA_VDR{dimer}:0.709796381803;ATF2:0.705859891707;JUN:0.694399172289;FOS_FOS{B,L1}_JUN{B,D}:0.664578365784;PAX8:0.663781497612;TLX2:0.628468981726;HMGA1,2:0.583444855505;FOXA2:0.582411206935;FOX{I1,J2}:0.528575153012;NFE2:0.519391844978;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.473356668165;ATF6:0.445122973511;NFE2L2:0.406222028739;NANOG:0.400206651824;MEF2{A,B,C,D}:0.369704456643;STAT2,4,6:0.35279784321;ALX4:0.352108602225;HBP1_HMGB_SSRP1_UBTF:0.325927821668;BPTF:0.316038349058;TAL1_TCF{3,4,12}:0.20200079401;CDX1,2,4:0.197860558269;PAX3,7:0.163581224783;RORA:0.112142804142;ESR1:0.0971379899514;HSF1,2:0.0880409123608;OCT4_SOX2{dimer}:0.0663339972967;NR6A1:0.047208439618;FOXQ1:0.0437919373002;NR5A1,2:0.0155884362814;PAX4:0.014017549308;AHR_ARNT_ARNT2:0.0122982900604;RFX1:0.00329973002748;T:-0.0847089878759;ELK1,4_GABP{A,B1}:-0.0880097836342;HNF4A_NR2F1,2:-0.113074018782;STAT1,3:-0.164999981993;NFE2L1:-0.177340460837;POU5F1:-0.200123904246;ZNF148:-0.200798405005;GATA4:-0.208995504357;TFCP2:-0.214388665071;HOX{A5,B5}:-0.216226628529;SRF:-0.258950994079;GATA6:-0.260536113528;SOX2:-0.30700254524;EBF1:-0.309754835563;STAT5{A,B}:-0.31750808844;XBP1:-0.322327063422;EN1,2:-0.331379035701;HOXA9_MEIS1:-0.337045041816;TFAP4:-0.350987070603;FOXP1:-0.352488768956;PPARG:-0.371449718492;POU2F1..3:-0.389044062112;NR1H4:-0.399782941483;PRRX1,2:-0.411638136297;RBPJ:-0.422019833209;MYB:-0.455903211437;CRX:-0.502893463252;NKX2-2,8:-0.534401650404;ALX1:-0.54398566331;NHLH1,2:-0.552942235702;RXR{A,B,G}:-0.559316157217;BREu{core}:-0.572030191882;MYOD1:-0.581625718088;DBP:-0.585706742329;NFIX:-0.624139994561;NFATC1..3:-0.629642292948;PBX1:-0.661922202105;CUX2:-0.673370674863;PDX1:-0.684508898141;IKZF1:-0.68656892062;PAX1,9:-0.693126795318;FOXD3:-0.702220786996;VSX1,2:-0.711920930863;SPZ1:-0.715644695549;IKZF2:-0.727457862017;MYFfamily:-0.728321667308;PITX1..3:-0.73944809975;HNF1A:-0.743677671215;AIRE:-0.761908559406;ZBTB16:-0.770283785506;PRDM1:-0.78106950382;REST:-0.786269711446;FOXL1:-0.787550308219;TOPORS:-0.796382974299;PAX5:-0.824375004728;ZEB1:-0.845877837534;ARID5B:-0.891015953819;MTF1:-0.909890926529;NKX6-1,2:-0.920311617105;ZNF238:-0.924251281783;NKX2-3_NKX2-5:-0.941889025791;SOX{8,9,10}:-0.951044034059;NFY{A,B,C}:-0.966949320049;TFAP2{A,C}:-0.996577574558;LEF1_TCF7_TCF7L1,2:-1.01270856947;TBP:-1.02961349582;E2F1..5:-1.03053170853;SOX5:-1.0315074991;POU1F1:-1.06412109769;AR:-1.06523457632;HOX{A6,A7,B6,B7}:-1.07278861374;PAX6:-1.07750096551;NKX3-2:-1.08399877863;GZF1:-1.08719344602;KLF4:-1.10717741365;SP1:-1.12077979062;GCM1,2:-1.15717240185;ZFP161:-1.16947804985;PATZ1:-1.19883537362;SMAD1..7,9:-1.20041974554;ZIC1..3:-1.21475232566;ADNP_IRX_SIX_ZHX:-1.23793768896;TP53:-1.24061572231;MTE{core}:-1.2591668987;YY1:-1.26429093619;LHX3,4:-1.28619783869;MZF1:-1.31495973858;EGR1..3:-1.32319342543;TFAP2B:-1.33563393327;SNAI1..3:-1.33873764713;GFI1:-1.36425710432;NRF1:-1.37141532096;HIC1:-1.37575056907;bHLH_family:-1.37694919971;TBX4,5:-1.38919968784;MYBL2:-1.39358623377;ZNF423:-1.40515677622;GFI1B:-1.43348836074;TLX1..3_NFIC{dimer}:-1.43694978603;MED-1{core}:-1.45170188639;NR3C1:-1.45976050127;RREB1:-1.51315196196;MAZ:-1.54816096544;TEF:-1.56537851661;GTF2I:-1.56574573634;ONECUT1,2:-1.57742582593;ZBTB6:-1.58834804854;TEAD1:-1.59633053297;NKX2-1,4:-1.63533059564;LMO2:-1.64593563814;NKX3-1:-1.65888537943;TFDP1:-1.68795813706;HOX{A4,D4}:-1.71099827032;ZNF143:-1.76700959982;XCPE1{core}:-1.80926342534;CDC5L:-1.82387162404;GTF2A1,2:-1.82507213599;UFEwm:-1.87014511524;ZNF384:-1.87747876295;POU6F1:-1.9099115455;HAND1,2:-2.0683284161;FOXM1:-2.10297685746;SOX17:-2.11203026466;EVI1:-2.23727952834;POU3F1..4:-2.70593199742
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11912-125G4;search_select_hide=table117:FF:11912-125G4
 }}

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FF:11912-125G4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:29, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0