FF:11932-125I6: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004861 | ||
| | |accession_numbers=CAGE;DRX008174;DRR009046;DRZ000471;DRZ001856;DRZ011821;DRZ013206 | ||
| | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000764,CL:0000548,CL:0000763,CL:0002371,CL:0000255,CL:0000558 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
| | |ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011169 | ||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr19:12998003..12998021,-!p1@KLF1!2.74!549.28!KLF1;;chrX:48644984..48645005,+!p1@GATA1!2.60!401.30!GATA1;;chr9:135854091..135854159,+!p1@GFI1B!2.44!275.55!GFI1B;;chr12:54689532..54689551,-!p4@NFE2!2.31!201.83!NFE2;;chr12:54694653..54694672,-!p2@NFE2!2.19!154.77!NFE2;;chr9:20382446..20382493,-!p4@MLLT3!2.12!132.29!MLLT3;;chr10:51572339..51572376,+!p4@NCOA4!2.10!270.59!NCOA4;;chr10:51572408..51572454,+!p3@NCOA4!2.07!643.39!NCOA4;;chr1:47695003..47695042,-!p2@TAL1!2.03!106.40!TAL1;;chr12:54694758..54694805,-!p1@NFE2!2.01!120.78!NFE2;;chr12:54694807..54694832,-!p3@NFE2!2.01!100.39!NFE2;;chr11:16403882..16403908,-!p9@SOX6!1.99!95.69!SOX6;;chr2:239148671..239148686,-!p1@HES6!1.93!292.55!HES6;;chr19:13213511..13213545,-!p2@LYL1!1.91!87.06!LYL1;;chr1:23857698..23857733,-!p1@E2F2!1.90!141.18!E2F2;;chr12:54689552..54689574,-!p6@NFE2!1.78!59.87!NFE2;;chr9:135854074..135854089,+!p2@GFI1B!1.68!47.32!GFI1B;;chrY:21906594..21906622,-!p1@KDM5D!1.67!45.49!KDM5D;;chrX:48644976..48644983,+!p2@GATA1!1.66!44.71!GATA1;;chr8:37963466..37963506,+!p3@ASH2L!1.62!50.72!ASH2L;;chr2:74229812..74229867,+!p1@TET3!1.60!93.86!TET3;;chr2:68592406..68592424,+!p1@PLEK!1.60!38.69!PLEK;;chr11:16403910..16403933,-!p12@SOX6!1.57!35.82!SOX6;;chr1:47697881..47697910,-!p4@TAL1!1.55!34.51!TAL1;;chr3:141747459..141747475,-!p1@TFDP2!1.50!245.75!TFDP2;;chr3:128212033..128212051,-!p1@GATA2!1.48!29.54!GATA2;;chr1:23857325..23857416,-!p2@E2F2!1.47!33.46!E2F2;;chr3:141747950..141748004,-!p7@TFDP2!1.41!24.84!TFDP2;;chr10:111967345..111967422,+!p1@MXI1!1.40!380.39!MXI1;;chr17:42299455..42299485,-!p12@UBTF!1.36!30.07!UBTF;;chr9:135854058..135854072,+!p3@GFI1B!1.36!21.96!GFI1B;;chrX:131623044..131623089,-!p1@MBNL3!1.31!78.69!MBNL3;;chr19:13213555..13213568,-!p5@LYL1!1.30!19.08!LYL1;;chr7:28220506..28220552,-!p3@JAZF1!1.30!18.82!JAZF1;;chr5:176738887..176738934,-!p1@MXD3!1.27!114.51!MXD3;;chr7:50343634..50343717,+!p2@IKZF1!1.26!16.99!IKZF1;;chr12:54694686..54694697,-!p8@NFE2!1.24!16.21!NFE2;;chr6:135502501..135502546,+!p1@MYB!1.23!19.35!MYB;;chr11:19262461..19262476,-!p5@E2F8!1.23!15.95!E2F8;;chrY:2803415..2803468,+!p1@ZFY!1.19!14.64!ZFY;;chrY:21906761..21906810,-!p2@KDM5D!1.18!14.12!KDM5D;;chr7:28220354..28220441,-!p1@JAZF1!1.17!213.07!JAZF1;;chr20:42295713..42295738,+!p2@MYBL2!1.17!80.26!MYBL2;;chr11:19263160..19263176,-!p1@E2F8!1.17!16.47!E2F8;;chr19:4067039..4067064,-!p3@ZBTB7A!1.16!39.22!ZBTB7A;;chr3:141748010..141748030,-!p8@TFDP2!1.16!13.59!TFDP2;;chr2:60780607..60780624,-!p2@BCL11A!1.15!40.26!BCL11A;;chr6:56954867..56954882,+!p2@ZNF451!1.15!38.17!ZNF451;;chr4:38665810..38665827,+!p1@KLF3!1.13!179.87!KLF3;;chr20:42295745..42295765,+!p1@MYBL2!1.12!198.95!MYBL2;;chrX:70316005..70316034,+!p2@FOXO4!1.12!21.96!FOXO4;;chr11:16627614..16627651,-!p4@SOX6!1.12!12.29!SOX6;;chr1:47696918..47696935,-!p6@TAL1!1.12!12.29!TAL1;;chr11:19262486..19262512,-!p4@E2F8!1.11!14.64!E2F8;;chr7:64363638..64363667,+!p1@ZNF273!1.10!58.82!ZNF273;;chr1:47697965..47697991,-!p7@TAL1!1.10!11.50!TAL1;;chr1:61548225..61548299,+!p1@NFIA!1.09!146.40!NFIA;;chr4:87928307..87928321,+!p8@AFF1!1.09!25.62!AFF1;;chr10:51565239..51565263,+!p2@NCOA4!1.08!255.68!NCOA4;;chr4:87928328..87928351,+!p6@AFF1!1.08!29.54!AFF1;;chr3:141747441..141747452,-!p4@TFDP2!1.08!15.42!TFDP2;;chr7:50343895..50343936,+!p5@IKZF1!1.08!10.98!IKZF1;;chrX:48645010..48645015,+!p3@GATA1!1.07!10.72!GATA1;;chr1:47697859..47697869,-!p14@TAL1!1.07!10.72!TAL1;;chrX:70315688..70315709,+!p1@FOXO4!1.06!24.57!FOXO4;;chrX:131622958..131622978,-!p3@MBNL3!1.04!12.55!MBNL3;;chr1:47691303..47691319,-!p5@TAL1!1.03!9.67!TAL1;;chr7:50344144..50344157,+!p6@IKZF1!1.01!9.15!IKZF1;;chr4:38665769..38665801,+!p2@KLF3!1.00!83.66!KLF3;;chr1:47694935..47694944,-!p15@TAL1!1.00!8.89!TAL1;;chr13:114238997..114239077,+!p1@TFDP1!0.99!451.24!TFDP1;;chr16:67226019..67226127,+!p1@E2F4!0.99!117.12!E2F4;;chr14:55493763..55493824,-!p1@WDHD1!0.97!64.31!WDHD1;;chr2:60780753..60780800,-!p1@BCL11A!0.97!41.83!BCL11A;;chr1:61548069..61548102,+!p3@NFIA!0.96!20.39!NFIA;;chrX:131623026..131623039,-!p5@MBNL3!0.96!8.10!MBNL3;;chr16:88519669..88519726,+!p1@ZFPM1!0.95!74.25!ZFPM1;;chr6:134274322..134274342,+!p3@TBPL1!0.95!25.62!TBPL1;;chr6:135502408..135502459,+!p2@MYB!0.95!9.15!MYB;;chr4:87928353..87928401,+!p4@AFF1!0.94!35.82!AFF1;;chr11:19263192..19263222,-!p2@E2F8!0.94!9.41!E2F8;;chr4:87928413..87928433,+!p3@AFF1!0.92!47.58!AFF1;;chr17:79881332..79881348,-!p3@MAFG!0.92!10.98!MAFG;;chr19:13213662..13213686,-!p1@LYL1!0.92!10.98!LYL1;;chr7:28220198..28220269,-!p2@JAZF1!0.91!67.19!JAZF1;;chr12:54691711..54691725,-!p7@NFE2!0.91!7.06!NFE2;;chr6:108882109..108882173,+!p2@FOXO3!0.90!39.22!FOXO3;;chr17:42298615..42298692,-!p2@UBTF!0.90!37.39!UBTF;;chr19:52074502..52074587,+!p1@ZNF175!0.90!26.14!ZNF175;;chr19:12203100..12203132,+!p1@ZNF788!0.89!14.12!ZNF788;;chr10:111985713..111985774,+!p2@MXI1!0.88!66.14!MXI1;;chr7:148581360..148581425,-!p1@EZH2!0.88!33.99!EZH2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.88!31.37!TAL1;;chr11:9482521..9482533,+!p2@ZNF14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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 66: | Line 41: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD34%2520cells%2520differentiated%2520to%2520erythrocyte%2520lineage%252c%2520biol_%2520rep2.CNhs13553.11932-125I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11932-125I6 | |||
|is_a=EFO:0002091;;FF:0000002;;FF:0011169 | |||
|is_obsolete= | |||
|library_id=CNhs13553 | |||
|library_id_phase_based=2:CNhs13553 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11932 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11932 | |||
|name=CD34 cells differentiated to erythrocyte lineage, biol_ rep2 | |||
|namespace= | |namespace= | ||
|part_of= | |part_of= | ||
|profile_cagescan= | |||
|profile_hcage=CNhs13553,LSID1033,release012,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq= | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0594529979683706,0,-0.0233638764016704,-0.00338818675584101,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336843937757206,0,0,0,0,0,0.00290713584995803,0,0,0.118512832025558,0,0,0,0,0,0,0,0,0,0,0,0,0.0959989489730406,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.186640232051129,0,-0.0969923612426051,0,0,0.26573733443641,0,0,0,0,0,0,0,0,0.182663088560083,0,0.100865032118016,0,0,0.100865032118016,0,0,0,0.0482328597096963,0,0,0,0,0,-0.0881268324752877,-0.513623127073355,0,0,0,-0.377991898445406,-0.211197402695869,0.050432516059008,0,0.0913315442800415,0,0.212815468690375,0.0430632800238583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0459410778634532,0,0,0,0.0150352564239433,0.0827608197172029,0,0,0,0,0,0 | |||
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| |||
|rna_box=125 | |||
|rna_catalog_number= | |||
|rna_concentration=290 | |||
|rna_extraction_protocol= | |||
|rna_lot_number= | |||
|rna_od260/230=1.21 | |||
|rna_od260/280=1.97 | |||
|rna_position=I6 | |||
|rna_rin= | |||
|rna_sample_type= | |||
|rna_tube_id=125I6 | |||
|rna_weight_ug=2.9 | |||
|sample_age= | |||
|sample_category=primary cells | |||
|sample_cell_catalog= | |||
|sample_cell_line= | |||
|sample_cell_lot= | |||
|sample_cell_type= | |||
|sample_collaboration=Kim Summers | |||
|sample_company= | |||
|sample_description= | |||
|sample_dev_stage=Adult | |||
|sample_disease= | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity= | |||
|sample_experimental_condition=Cells differentiated from CD34 precursors in erythroid lineage (Reticulocytes) Rep 2 | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.79558929867921e-287!GO:0043227;membrane-bound organelle;1.96830176858327e-248!GO:0043231;intracellular membrane-bound organelle;3.40163605964227e-248!GO:0043226;organelle;3.27493406568828e-237!GO:0043229;intracellular organelle;1.66062763801919e-236!GO:0044422;organelle part;4.36429990434602e-174!GO:0044446;intracellular organelle part;9.37122581211375e-173!GO:0005737;cytoplasm;2.32506311419077e-164!GO:0032991;macromolecular complex;6.3138214163285e-131!GO:0005634;nucleus;9.12948463282163e-131!GO:0044237;cellular metabolic process;2.04568408207268e-128!GO:0044444;cytoplasmic part;3.01558124943555e-121!GO:0044238;primary metabolic process;3.62185056772082e-120!GO:0043170;macromolecule metabolic process;1.2249428978698e-111!GO:0044428;nuclear part;1.25115673362108e-104!GO:0030529;ribonucleoprotein complex;4.99640012708433e-96!GO:0043233;organelle lumen;2.44625235808883e-88!GO:0031974;membrane-enclosed lumen;2.44625235808883e-88!GO:0003723;RNA binding;3.091281642007e-85!GO:0005739;mitochondrion;2.90657137262106e-79!GO:0043283;biopolymer metabolic process;9.60326475782251e-73!GO:0043234;protein complex;1.0756193804091e-70!GO:0006259;DNA metabolic process;3.47624193746175e-68!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.18880500174306e-67!GO:0006396;RNA processing;1.02242887587724e-60!GO:0031981;nuclear lumen;1.44144340272194e-60!GO:0010467;gene expression;6.34298254182162e-58!GO:0006412;translation;8.24772189934568e-57!GO:0005840;ribosome;4.72234214749048e-54!GO:0044429;mitochondrial part;8.95544571275923e-54!GO:0019538;protein metabolic process;5.22948468400336e-53!GO:0031967;organelle envelope;4.20056434686781e-51!GO:0031975;envelope;1.07914222448483e-50!GO:0005515;protein binding;9.54959443292026e-50!GO:0016071;mRNA metabolic process;2.51938081072466e-49!GO:0044267;cellular protein metabolic process;2.38506322957159e-48!GO:0007049;cell cycle;6.73463563102774e-48!GO:0003735;structural constituent of ribosome;1.44452816530071e-47!GO:0009058;biosynthetic process;2.3942819516532e-47!GO:0044260;cellular macromolecule metabolic process;6.69743226424946e-47!GO:0044249;cellular biosynthetic process;2.13536281555662e-46!GO:0016043;cellular component organization and biogenesis;2.28549643240325e-46!GO:0031090;organelle membrane;6.35656783040461e-46!GO:0008380;RNA splicing;1.48966389620693e-44!GO:0003676;nucleic acid binding;2.62040992832387e-44!GO:0006996;organelle organization and biogenesis;3.27026766099016e-44!GO:0006397;mRNA processing;3.27026766099016e-44!GO:0009059;macromolecule biosynthetic process;5.85844257778951e-44!GO:0033036;macromolecule localization;6.35579308108091e-44!GO:0065003;macromolecular complex assembly;1.38871681985983e-42!GO:0005829;cytosol;4.08497990162995e-42!GO:0005694;chromosome;1.19558432375738e-41!GO:0015031;protein transport;1.57885519728334e-41!GO:0043228;non-membrane-bound organelle;1.72984634921431e-41!GO:0043232;intracellular non-membrane-bound organelle;1.72984634921431e-41!GO:0033279;ribosomal subunit;1.24413436397026e-40!GO:0005654;nucleoplasm;1.08781901057641e-39!GO:0008104;protein localization;4.6412269400511e-39!GO:0045184;establishment of protein localization;7.4065481619119e-39!GO:0022402;cell cycle process;2.05243960372587e-38!GO:0022607;cellular component assembly;4.0067208021041e-38!GO:0006974;response to DNA damage stimulus;5.01096393586276e-38!GO:0044427;chromosomal part;8.29512131483066e-38!GO:0000278;mitotic cell cycle;4.43076993103273e-37!GO:0005740;mitochondrial envelope;3.47041687222477e-36!GO:0051276;chromosome organization and biogenesis;5.62445409294709e-36!GO:0006281;DNA repair;2.88700035401421e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.18700720880139e-34!GO:0005681;spliceosome;2.89955027397198e-34!GO:0019866;organelle inner membrane;2.98847365081708e-34!GO:0044445;cytosolic part;1.21746003602509e-33!GO:0031966;mitochondrial membrane;1.44649462118085e-33!GO:0022403;cell cycle phase;4.42753334196975e-33!GO:0046907;intracellular transport;1.49217645763189e-32!GO:0005743;mitochondrial inner membrane;1.81594781703348e-31!GO:0044451;nucleoplasm part;3.10638053744411e-31!GO:0000166;nucleotide binding;3.41607341398582e-31!GO:0000087;M phase of mitotic cell cycle;8.42205768922449e-30!GO:0016462;pyrophosphatase activity;1.52817366200564e-29!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.82434920922617e-29!GO:0016817;hydrolase activity, acting on acid anhydrides;2.44655568045276e-29!GO:0007067;mitosis;2.65240249459075e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.74535313612652e-29!GO:0017111;nucleoside-triphosphatase activity;7.39894623159925e-29!GO:0016070;RNA metabolic process;8.24449364898874e-29!GO:0000279;M phase;1.57507578950379e-28!GO:0006886;intracellular protein transport;3.46657070764405e-28!GO:0006512;ubiquitin cycle;1.06333678833309e-27!GO:0016874;ligase activity;8.16848775648895e-27!GO:0006325;establishment and/or maintenance of chromatin architecture;1.61902236511874e-26!GO:0051301;cell division;2.65904876074005e-26!GO:0006323;DNA packaging;1.17051554455691e-25!GO:0009719;response to endogenous stimulus;3.81424291745665e-25!GO:0006260;DNA replication;3.85637851981472e-25!GO:0051649;establishment of cellular localization;9.52800802936802e-25!GO:0006119;oxidative phosphorylation;9.52800802936802e-25!GO:0051641;cellular localization;5.16260077436248e-24!GO:0044455;mitochondrial membrane part;5.6859243516255e-24!GO:0016887;ATPase activity;1.58331514306516e-23!GO:0031980;mitochondrial lumen;1.17287929251985e-22!GO:0005759;mitochondrial matrix;1.17287929251985e-22!GO:0044265;cellular macromolecule catabolic process;2.17264329683716e-22!GO:0005524;ATP binding;1.7783671717593e-21!GO:0032553;ribonucleotide binding;1.78116624982688e-21!GO:0032555;purine ribonucleotide binding;1.78116624982688e-21!GO:0017076;purine nucleotide binding;2.21618975528395e-21!GO:0042623;ATPase activity, coupled;2.23746832512683e-21!GO:0032559;adenyl ribonucleotide binding;2.95890684301922e-21!GO:0015935;small ribosomal subunit;4.82525327879166e-21!GO:0030554;adenyl nucleotide binding;7.42298040225347e-21!GO:0022618;protein-RNA complex assembly;1.03558403570759e-20!GO:0015934;large ribosomal subunit;1.12795698783162e-20!GO:0043285;biopolymer catabolic process;3.00777739012197e-20!GO:0005730;nucleolus;3.20773758499151e-20!GO:0019941;modification-dependent protein catabolic process;4.37295314623578e-20!GO:0043632;modification-dependent macromolecule catabolic process;4.37295314623578e-20!GO:0006511;ubiquitin-dependent protein catabolic process;4.37295314623578e-20!GO:0051603;proteolysis involved in cellular protein catabolic process;5.73200188009015e-20!GO:0065004;protein-DNA complex assembly;7.07345876768527e-20!GO:0044257;cellular protein catabolic process;8.5205272063849e-20!GO:0044248;cellular catabolic process;3.97510428333908e-19!GO:0051186;cofactor metabolic process;4.29145110342385e-19!GO:0000785;chromatin;5.00958004292279e-19!GO:0016604;nuclear body;5.77795293762158e-19!GO:0006333;chromatin assembly or disassembly;1.02367291218367e-18!GO:0009057;macromolecule catabolic process;2.18993433775127e-18!GO:0005746;mitochondrial respiratory chain;2.61453880388217e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.24173653984494e-17!GO:0008135;translation factor activity, nucleic acid binding;1.47883153756238e-17!GO:0006457;protein folding;1.74015082625688e-17!GO:0051726;regulation of cell cycle;4.98828471860945e-17!GO:0000074;regulation of progression through cell cycle;6.89686556277478e-17!GO:0044453;nuclear membrane part;3.09234692039087e-16!GO:0043412;biopolymer modification;3.71445180483258e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.80188859356317e-16!GO:0003954;NADH dehydrogenase activity;3.80188859356317e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.80188859356317e-16!GO:0030163;protein catabolic process;4.52306071063908e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;7.50633353899248e-16!GO:0000375;RNA splicing, via transesterification reactions;7.50633353899248e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.50633353899248e-16!GO:0005761;mitochondrial ribosome;7.80160138225223e-16!GO:0000313;organellar ribosome;7.80160138225223e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.92328660928813e-16!GO:0008134;transcription factor binding;9.21682411961635e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.18480800193675e-15!GO:0005635;nuclear envelope;1.34137382982118e-15!GO:0012505;endomembrane system;1.48674380604242e-15!GO:0006334;nucleosome assembly;1.75340467623141e-15!GO:0031497;chromatin assembly;2.15176856081743e-15!GO:0000775;chromosome, pericentric region;3.63247126107649e-15!GO:0004386;helicase activity;5.41595617018129e-15!GO:0031965;nuclear membrane;5.91697268575778e-15!GO:0016607;nuclear speck;6.53655699139262e-15!GO:0050657;nucleic acid transport;7.87106822321967e-15!GO:0051236;establishment of RNA localization;7.87106822321967e-15!GO:0050658;RNA transport;7.87106822321967e-15!GO:0005643;nuclear pore;1.0672767064052e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.24683480981319e-14!GO:0042773;ATP synthesis coupled electron transport;1.24683480981319e-14!GO:0006403;RNA localization;1.34436923978035e-14!GO:0051082;unfolded protein binding;2.20668538527689e-14!GO:0006605;protein targeting;2.42514321070417e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.57270522478081e-14!GO:0045271;respiratory chain complex I;2.57270522478081e-14!GO:0005747;mitochondrial respiratory chain complex I;2.57270522478081e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.84984730935727e-14!GO:0006413;translational initiation;4.25157956486322e-14!GO:0016568;chromatin modification;4.52531555237036e-14!GO:0006464;protein modification process;5.94705429283512e-14!GO:0042254;ribosome biogenesis and assembly;6.43509589645019e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.70601186285649e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.79401115454477e-14!GO:0003743;translation initiation factor activity;9.63077048576107e-14!GO:0008026;ATP-dependent helicase activity;3.70812821970139e-13!GO:0048770;pigment granule;6.34399852516334e-13!GO:0042470;melanosome;6.34399852516334e-13!GO:0006732;coenzyme metabolic process;6.71679295306854e-13!GO:0051188;cofactor biosynthetic process;1.00773932375066e-12!GO:0043687;post-translational protein modification;1.09868923853049e-12!GO:0051028;mRNA transport;1.27102377198292e-12!GO:0003697;single-stranded DNA binding;1.56359079825866e-12!GO:0005819;spindle;2.17457076514774e-12!GO:0019787;small conjugating protein ligase activity;2.20275251744994e-12!GO:0006399;tRNA metabolic process;2.23820275290005e-12!GO:0008639;small protein conjugating enzyme activity;3.29206964037137e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.55398298363715e-12!GO:0006913;nucleocytoplasmic transport;4.7904115565388e-12!GO:0046930;pore complex;5.10101425911881e-12!GO:0051169;nuclear transport;1.05015813723328e-11!GO:0065002;intracellular protein transport across a membrane;1.06480199989969e-11!GO:0003712;transcription cofactor activity;1.08833497502483e-11!GO:0009056;catabolic process;1.09607319643068e-11!GO:0004842;ubiquitin-protein ligase activity;1.26018340724483e-11!GO:0006261;DNA-dependent DNA replication;1.91361271333824e-11!GO:0043566;structure-specific DNA binding;2.29221656805832e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.30226320800609e-11!GO:0009259;ribonucleotide metabolic process;2.78184081334309e-11!GO:0006446;regulation of translational initiation;2.85845046321638e-11!GO:0015630;microtubule cytoskeleton;3.82476040408173e-11!GO:0006163;purine nucleotide metabolic process;4.27947670914764e-11!GO:0005813;centrosome;4.50961098136062e-11!GO:0051329;interphase of mitotic cell cycle;4.59340053114885e-11!GO:0016881;acid-amino acid ligase activity;6.44632584463123e-11!GO:0005815;microtubule organizing center;7.53737684772464e-11!GO:0016787;hydrolase activity;9.76527216293974e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.05223740978421e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.19845346193408e-10!GO:0008565;protein transporter activity;1.23616004679181e-10!GO:0048193;Golgi vesicle transport;1.28827304527633e-10!GO:0051325;interphase;2.14385777151064e-10!GO:0009150;purine ribonucleotide metabolic process;2.98259810703754e-10!GO:0009260;ribonucleotide biosynthetic process;4.12014294363192e-10!GO:0006164;purine nucleotide biosynthetic process;4.54421844163255e-10!GO:0007059;chromosome segregation;4.55446321199976e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.33460962802296e-10!GO:0000786;nucleosome;5.48925746484002e-10!GO:0016072;rRNA metabolic process;6.90304806779894e-10!GO:0032446;protein modification by small protein conjugation;8.58563068114292e-10!GO:0006364;rRNA processing;8.99428247235041e-10!GO:0000075;cell cycle checkpoint;1.24710983166333e-09!GO:0016779;nucleotidyltransferase activity;1.73150818189098e-09!GO:0015986;ATP synthesis coupled proton transport;1.9299054535246e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.9299054535246e-09!GO:0008094;DNA-dependent ATPase activity;2.67159243047571e-09!GO:0016567;protein ubiquitination;2.75695532702745e-09!GO:0007051;spindle organization and biogenesis;2.89566925995024e-09!GO:0012501;programmed cell death;3.10469547124892e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.17407768964315e-09!GO:0006915;apoptosis;3.19957440597789e-09!GO:0006461;protein complex assembly;3.20007886334242e-09!GO:0005794;Golgi apparatus;3.42978919039934e-09!GO:0015078;hydrogen ion transmembrane transporter activity;3.63883115405327e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.72552819135548e-09!GO:0009141;nucleoside triphosphate metabolic process;3.81363463089862e-09!GO:0019829;cation-transporting ATPase activity;3.87696648476745e-09!GO:0046034;ATP metabolic process;4.68141988528033e-09!GO:0016192;vesicle-mediated transport;5.14302680066602e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.00268844795723e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.00268844795723e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.00268844795723e-09!GO:0005657;replication fork;6.48677125066339e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.61584953720464e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.99006889714732e-09!GO:0009144;purine nucleoside triphosphate metabolic process;7.99006889714732e-09!GO:0009055;electron carrier activity;8.13820303141897e-09!GO:0017038;protein import;8.37083963313472e-09!GO:0043038;amino acid activation;1.08433174918633e-08!GO:0006418;tRNA aminoacylation for protein translation;1.08433174918633e-08!GO:0043039;tRNA aminoacylation;1.08433174918633e-08!GO:0009108;coenzyme biosynthetic process;1.09566316389848e-08!GO:0006754;ATP biosynthetic process;1.39630330688623e-08!GO:0006753;nucleoside phosphate metabolic process;1.39630330688623e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.60231823234473e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.60231823234473e-08!GO:0008219;cell death;1.78541909310948e-08!GO:0016265;death;1.78541909310948e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.23260827063022e-08!GO:0000151;ubiquitin ligase complex;2.26029683911395e-08!GO:0016740;transferase activity;2.38115676615115e-08!GO:0003713;transcription coactivator activity;2.5316608062129e-08!GO:0005768;endosome;3.03362203641668e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.49376326261008e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.49376326261008e-08!GO:0005783;endoplasmic reticulum;4.17407702123144e-08!GO:0016469;proton-transporting two-sector ATPase complex;6.57460975471353e-08!GO:0006302;double-strand break repair;7.34125331069253e-08!GO:0019222;regulation of metabolic process;8.39450339233813e-08!GO:0000776;kinetochore;9.23744786156156e-08!GO:0006366;transcription from RNA polymerase II promoter;1.03304464409319e-07!GO:0009117;nucleotide metabolic process;1.40619309060702e-07!GO:0006310;DNA recombination;2.11904486246064e-07!GO:0007088;regulation of mitosis;2.14453707205776e-07!GO:0016363;nuclear matrix;2.16725539099624e-07!GO:0009060;aerobic respiration;2.70496694779768e-07!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.384312183052e-07!GO:0015399;primary active transmembrane transporter activity;3.384312183052e-07!GO:0006950;response to stress;3.60410710669874e-07!GO:0000079;regulation of cyclin-dependent protein kinase activity;4.00007113723631e-07!GO:0006752;group transfer coenzyme metabolic process;4.40863201063441e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.52136018552201e-07!GO:0045259;proton-transporting ATP synthase complex;5.0536983437996e-07!GO:0044432;endoplasmic reticulum part;5.30493715070816e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.48560571698209e-07!GO:0051246;regulation of protein metabolic process;6.99392268918534e-07!GO:0007005;mitochondrion organization and biogenesis;7.03326250541184e-07!GO:0006401;RNA catabolic process;7.38440328586948e-07!GO:0004527;exonuclease activity;7.47428783967516e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.64575251364047e-07!GO:0000245;spliceosome assembly;8.35295045216207e-07!GO:0003899;DNA-directed RNA polymerase activity;8.39291038977423e-07!GO:0045333;cellular respiration;9.98959103126267e-07!GO:0051168;nuclear export;1.43208607315249e-06!GO:0003724;RNA helicase activity;1.67601879600759e-06!GO:0050794;regulation of cellular process;1.72901362181797e-06!GO:0003682;chromatin binding;1.80228783303674e-06!GO:0004518;nuclease activity;2.1552779413205e-06!GO:0008654;phospholipid biosynthetic process;2.3856745427281e-06!GO:0004298;threonine endopeptidase activity;2.49124691765777e-06!GO:0051427;hormone receptor binding;3.01767367191929e-06!GO:0005667;transcription factor complex;3.2894183217774e-06!GO:0006091;generation of precursor metabolites and energy;4.63541232694248e-06!GO:0051170;nuclear import;5.01708215892465e-06!GO:0003678;DNA helicase activity;5.06418893157829e-06!GO:0006352;transcription initiation;5.46045223412367e-06!GO:0031323;regulation of cellular metabolic process;6.18197380431917e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.1877171514206e-06!GO:0044440;endosomal part;6.29808231043589e-06!GO:0010008;endosome membrane;6.29808231043589e-06!GO:0003690;double-stranded DNA binding;7.33216700189418e-06!GO:0035257;nuclear hormone receptor binding;7.33216700189418e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.0268890093694e-06!GO:0043623;cellular protein complex assembly;9.40743246188171e-06!GO:0006888;ER to Golgi vesicle-mediated transport;9.53310685966784e-06!GO:0005770;late endosome;9.69522487473913e-06!GO:0016563;transcription activator activity;9.69522487473913e-06!GO:0006606;protein import into nucleus;1.04923606463219e-05!GO:0045786;negative regulation of progression through cell cycle;1.30365017054272e-05!GO:0005762;mitochondrial large ribosomal subunit;1.33659481510369e-05!GO:0000315;organellar large ribosomal subunit;1.33659481510369e-05!GO:0043492;ATPase activity, coupled to movement of substances;1.39688245501661e-05!GO:0046483;heterocycle metabolic process;1.42104903255333e-05!GO:0006099;tricarboxylic acid cycle;1.50378336684108e-05!GO:0046356;acetyl-CoA catabolic process;1.50378336684108e-05!GO:0005789;endoplasmic reticulum membrane;1.53248713487465e-05!GO:0016310;phosphorylation;1.62360410140445e-05!GO:0006084;acetyl-CoA metabolic process;1.80053155340195e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;1.85224503127564e-05!GO:0007093;mitotic cell cycle checkpoint;1.99467294017748e-05!GO:0042981;regulation of apoptosis;2.09634346935884e-05!GO:0006613;cotranslational protein targeting to membrane;2.33275459949822e-05!GO:0048475;coated membrane;2.33275459949822e-05!GO:0030117;membrane coat;2.33275459949822e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.37394630549833e-05!GO:0006402;mRNA catabolic process;2.47462584142247e-05!GO:0022890;inorganic cation transmembrane transporter activity;2.47724162737272e-05!GO:0016491;oxidoreductase activity;2.7796979869444e-05!GO:0043067;regulation of programmed cell death;2.86898654420034e-05!GO:0000228;nuclear chromosome;2.94147250482927e-05!GO:0006793;phosphorus metabolic process;3.10733849861641e-05!GO:0006796;phosphate metabolic process;3.10733849861641e-05!GO:0042168;heme metabolic process;3.13231568881674e-05!GO:0015992;proton transport;3.14284740008497e-05!GO:0006778;porphyrin metabolic process;3.28658326056825e-05!GO:0033013;tetrapyrrole metabolic process;3.28658326056825e-05!GO:0006350;transcription;3.35880492666296e-05!GO:0008168;methyltransferase activity;3.47012646866265e-05!GO:0006612;protein targeting to membrane;3.48087821920291e-05!GO:0000082;G1/S transition of mitotic cell cycle;3.48087821920291e-05!GO:0000070;mitotic sister chromatid segregation;3.55186170789506e-05!GO:0006783;heme biosynthetic process;3.62953608566643e-05!GO:0000314;organellar small ribosomal subunit;3.74464486719589e-05!GO:0005763;mitochondrial small ribosomal subunit;3.74464486719589e-05!GO:0000819;sister chromatid segregation;3.7564689988961e-05!GO:0008033;tRNA processing;3.80338486045431e-05!GO:0007052;mitotic spindle organization and biogenesis;3.8514141229531e-05!GO:0006818;hydrogen transport;3.86326335147561e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.88538717940503e-05!GO:0003684;damaged DNA binding;3.94804969696484e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.02216209493054e-05!GO:0043069;negative regulation of programmed cell death;4.11889950936986e-05!GO:0005876;spindle microtubule;4.28500929002903e-05!GO:0006779;porphyrin biosynthetic process;4.80774072840586e-05!GO:0033014;tetrapyrrole biosynthetic process;4.80774072840586e-05!GO:0051187;cofactor catabolic process;4.96109098633706e-05!GO:0008186;RNA-dependent ATPase activity;5.45620969414726e-05!GO:0032508;DNA duplex unwinding;5.47598937009056e-05!GO:0032392;DNA geometric change;5.47598937009056e-05!GO:0043066;negative regulation of apoptosis;5.57414945332729e-05!GO:0000922;spindle pole;6.33338537544271e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.42655723690004e-05!GO:0048523;negative regulation of cellular process;7.16447884111004e-05!GO:0005793;ER-Golgi intermediate compartment;7.43736976824976e-05!GO:0006270;DNA replication initiation;7.54184514415579e-05!GO:0009165;nucleotide biosynthetic process;7.72040788204539e-05!GO:0019899;enzyme binding;8.70765213450297e-05!GO:0006383;transcription from RNA polymerase III promoter;8.90228146552268e-05!GO:0009109;coenzyme catabolic process;0.000101010386009971!GO:0006268;DNA unwinding during replication;0.000102161278337546!GO:0031324;negative regulation of cellular metabolic process;0.000111273494065817!GO:0003729;mRNA binding;0.000111418470879702!GO:0046474;glycerophospholipid biosynthetic process;0.000115198574078784!GO:0046489;phosphoinositide biosynthetic process;0.00013295480614901!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000137828331094763!GO:0007017;microtubule-based process;0.000146095950204151!GO:0003924;GTPase activity;0.000151903570001393!GO:0044431;Golgi apparatus part;0.000162421089659982!GO:0043021;ribonucleoprotein binding;0.000168232230849224!GO:0004004;ATP-dependent RNA helicase activity;0.000168604145309222!GO:0046467;membrane lipid biosynthetic process;0.000174675829839257!GO:0003677;DNA binding;0.000181741829993914!GO:0031072;heat shock protein binding;0.000183606390853288!GO:0010468;regulation of gene expression;0.000189314048886949!GO:0006916;anti-apoptosis;0.00018932646328282!GO:0043596;nuclear replication fork;0.00019813297659597!GO:0006082;organic acid metabolic process;0.000203973297082316!GO:0051052;regulation of DNA metabolic process;0.000208170848004936!GO:0006405;RNA export from nucleus;0.000223423214154731!GO:0019752;carboxylic acid metabolic process;0.000224144354999745!GO:0005773;vacuole;0.00022861033216093!GO:0030120;vesicle coat;0.00022877423991968!GO:0030662;coated vesicle membrane;0.00022877423991968!GO:0051087;chaperone binding;0.000230651596322363!GO:0030521;androgen receptor signaling pathway;0.000246265073845739!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000250783958909335!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000258178226675079!GO:0000793;condensed chromosome;0.000259386077149109!GO:0005741;mitochondrial outer membrane;0.00028471593174194!GO:0019867;outer membrane;0.000311213433490007!GO:0009892;negative regulation of metabolic process;0.000316221851731192!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00032523704721356!GO:0000059;protein import into nucleus, docking;0.000345782665640683!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000354957009808859!GO:0007006;mitochondrial membrane organization and biogenesis;0.000375606373306096!GO:0006338;chromatin remodeling;0.000381610830529265!GO:0019843;rRNA binding;0.000391161247604557!GO:0051540;metal cluster binding;0.000400783535496655!GO:0051536;iron-sulfur cluster binding;0.000400783535496655!GO:0031968;organelle outer membrane;0.000409514691699003!GO:0000725;recombinational repair;0.000417005009669002!GO:0000724;double-strand break repair via homologous recombination;0.000417005009669002!GO:0043681;protein import into mitochondrion;0.000419568880860804!GO:0006367;transcription initiation from RNA polymerase II promoter;0.000428019431507646!GO:0015631;tubulin binding;0.000428751962206476!GO:0046914;transition metal ion binding;0.000430269413763949!GO:0016251;general RNA polymerase II transcription factor activity;0.000444944389128176!GO:0006626;protein targeting to mitochondrion;0.00044509091479808!GO:0008408;3'-5' exonuclease activity;0.000465445097128149!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000471299296074319!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000482997469013917!GO:0008610;lipid biosynthetic process;0.000490244404935588!GO:0016853;isomerase activity;0.000498532365199006!GO:0044454;nuclear chromosome part;0.000505286941919036!GO:0006289;nucleotide-excision repair;0.000627339038589122!GO:0030384;phosphoinositide metabolic process;0.000658192464207197!GO:0065009;regulation of a molecular function;0.000658192464207197!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000667196212202205!GO:0006650;glycerophospholipid metabolic process;0.000697344847592538!GO:0030518;steroid hormone receptor signaling pathway;0.00070324003319999!GO:0048519;negative regulation of biological process;0.000708585504861661!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000733354798945482!GO:0000049;tRNA binding;0.000761319454172602!GO:0031570;DNA integrity checkpoint;0.000764848682739069!GO:0007050;cell cycle arrest;0.000779417176134009!GO:0005637;nuclear inner membrane;0.000780758445069928!GO:0000287;magnesium ion binding;0.000827828578689131!GO:0006891;intra-Golgi vesicle-mediated transport;0.000839036397299605!GO:0008234;cysteine-type peptidase activity;0.000864361755899759!GO:0044452;nucleolar part;0.00087895489053387!GO:0006414;translational elongation;0.000901153552945132!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000914412946239278!GO:0043601;nuclear replisome;0.000925542018489077!GO:0030894;replisome;0.000925542018489077!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00103520664291688!GO:0006506;GPI anchor biosynthetic process;0.00106259661074216!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00107530152912322!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00107530152912322!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0010759235434663!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00108576729872501!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00108576729872501!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00108576729872501!GO:0006118;electron transport;0.00111719616359085!GO:0051252;regulation of RNA metabolic process;0.00113830776401006!GO:0032774;RNA biosynthetic process;0.00113930745393496!GO:0006611;protein export from nucleus;0.0011590425597725!GO:0032200;telomere organization and biogenesis;0.00123770232100407!GO:0000723;telomere maintenance;0.00123770232100407!GO:0005669;transcription factor TFIID complex;0.00124134456777509!GO:0005769;early endosome;0.00125791016124959!GO:0045454;cell redox homeostasis;0.00137293393367412!GO:0005684;U2-dependent spliceosome;0.00137293393367412!GO:0035258;steroid hormone receptor binding;0.00139143011845218!GO:0016272;prefoldin complex;0.00141549199925115!GO:0000152;nuclear ubiquitin ligase complex;0.00141549199925115!GO:0004674;protein serine/threonine kinase activity;0.00141605049134832!GO:0030218;erythrocyte differentiation;0.0014865874543189!GO:0050789;regulation of biological process;0.00149048443731843!GO:0000323;lytic vacuole;0.00150519560475271!GO:0005764;lysosome;0.00150519560475271!GO:0006351;transcription, DNA-dependent;0.00150699723420805!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00152621657631186!GO:0051920;peroxiredoxin activity;0.00159085630148347!GO:0003711;transcription elongation regulator activity;0.00164143360874295!GO:0042393;histone binding;0.00165249588258686!GO:0031902;late endosome membrane;0.00166093907767224!GO:0048500;signal recognition particle;0.00170829629016576!GO:0030880;RNA polymerase complex;0.0018275582409645!GO:0004003;ATP-dependent DNA helicase activity;0.00183802306406286!GO:0048487;beta-tubulin binding;0.00189174356839272!GO:0005758;mitochondrial intermembrane space;0.00189591425494626!GO:0008312;7S RNA binding;0.00189666200158313!GO:0006417;regulation of translation;0.00199001811002619!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00199001811002619!GO:0005874;microtubule;0.00237895745514525!GO:0050811;GABA receptor binding;0.00237895745514525!GO:0006839;mitochondrial transport;0.00254770347089984!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00254770347089984!GO:0015002;heme-copper terminal oxidase activity;0.00254770347089984!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00254770347089984!GO:0004129;cytochrome-c oxidase activity;0.00254770347089984!GO:0000139;Golgi membrane;0.00261468111821148!GO:0030867;rough endoplasmic reticulum membrane;0.00269286101367545!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00269324080899615!GO:0006284;base-excision repair;0.00270503314059524!GO:0000910;cytokinesis;0.00271272049420324!GO:0003714;transcription corepressor activity;0.00288502755410489!GO:0016564;transcription repressor activity;0.00295109131181382!GO:0044450;microtubule organizing center part;0.00298050316947607!GO:0005798;Golgi-associated vesicle;0.00300621770051971!GO:0005885;Arp2/3 protein complex;0.003079808854457!GO:0045045;secretory pathway;0.00309248448656132!GO:0016859;cis-trans isomerase activity;0.00311577693340768!GO:0019783;small conjugating protein-specific protease activity;0.00326893509890007!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00326893509890007!GO:0045047;protein targeting to ER;0.00326893509890007!GO:0004532;exoribonuclease activity;0.00331870516062562!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00331870516062562!GO:0051539;4 iron, 4 sulfur cluster binding;0.00333844233240611!GO:0047485;protein N-terminus binding;0.00343089318557726!GO:0000077;DNA damage checkpoint;0.00344036972120849!GO:0008276;protein methyltransferase activity;0.00347884128019201!GO:0006505;GPI anchor metabolic process;0.00352394329459107!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00354869343735085!GO:0031124;mRNA 3'-end processing;0.00362497436447692!GO:0006979;response to oxidative stress;0.00370402516691088!GO:0042770;DNA damage response, signal transduction;0.00370787243339594!GO:0046966;thyroid hormone receptor binding;0.00371522748135462!GO:0006643;membrane lipid metabolic process;0.00378619477719306!GO:0030522;intracellular receptor-mediated signaling pathway;0.00380811199384285!GO:0006520;amino acid metabolic process;0.00382564899558089!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00383525086021532!GO:0032259;methylation;0.00386121184385635!GO:0006497;protein amino acid lipidation;0.00389584189356088!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00397721656635007!GO:0000428;DNA-directed RNA polymerase complex;0.00397721656635007!GO:0009112;nucleobase metabolic process;0.00411842689882694!GO:0004843;ubiquitin-specific protease activity;0.004341577614841!GO:0000096;sulfur amino acid metabolic process;0.00447599561072276!GO:0005680;anaphase-promoting complex;0.00450289313526187!GO:0005774;vacuolar membrane;0.00456017836454899!GO:0000726;non-recombinational repair;0.00456742822767076!GO:0050681;androgen receptor binding;0.00465592907358688!GO:0051789;response to protein stimulus;0.00471126134632744!GO:0006986;response to unfolded protein;0.00471126134632744!GO:0000080;G1 phase of mitotic cell cycle;0.00480348176515692!GO:0006730;one-carbon compound metabolic process;0.00502996920476845!GO:0050790;regulation of catalytic activity;0.00503267751008072!GO:0051053;negative regulation of DNA metabolic process;0.00504686945247451!GO:0030118;clathrin coat;0.00513827867509703!GO:0000781;chromosome, telomeric region;0.00546120872778803!GO:0032984;macromolecular complex disassembly;0.00546444509534912!GO:0006144;purine base metabolic process;0.00558867523147296!GO:0031326;regulation of cellular biosynthetic process;0.00561034288214989!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00578280813290852!GO:0042158;lipoprotein biosynthetic process;0.00596048680378782!GO:0031970;organelle envelope lumen;0.00606365362180427!GO:0008270;zinc ion binding;0.00611935177310576!GO:0008180;signalosome;0.00619478528112399!GO:0051297;centrosome organization and biogenesis;0.00620118044951934!GO:0031023;microtubule organizing center organization and biogenesis;0.00620118044951934!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00661734180161335!GO:0050662;coenzyme binding;0.0067635178771893!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00684258067170316!GO:0045449;regulation of transcription;0.00709246482691836!GO:0000178;exosome (RNase complex);0.00709246482691836!GO:0006368;RNA elongation from RNA polymerase II promoter;0.00745187242976887!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00772189639143008!GO:0003887;DNA-directed DNA polymerase activity;0.00804670814114881!GO:0031123;RNA 3'-end processing;0.00807616442434651!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00824274286398092!GO:0044438;microbody part;0.00829819854317367!GO:0044439;peroxisomal part;0.00829819854317367!GO:0005525;GTP binding;0.00832606165966293!GO:0016584;nucleosome positioning;0.0086872983262939!GO:0031988;membrane-bound vesicle;0.00881851028475853!GO:0022406;membrane docking;0.00885624446965644!GO:0048278;vesicle docking;0.00885624446965644!GO:0032940;secretion by cell;0.00891410679466203!GO:0005869;dynactin complex;0.00891410679466203!GO:0031577;spindle checkpoint;0.00903581681226652!GO:0048471;perinuclear region of cytoplasm;0.00921176992459987!GO:0030663;COPI coated vesicle membrane;0.00936509045526608!GO:0030126;COPI vesicle coat;0.00936509045526608!GO:0005663;DNA replication factor C complex;0.00937923085554101!GO:0000175;3'-5'-exoribonuclease activity;0.00945438665645452!GO:0004221;ubiquitin thiolesterase activity;0.00945438665645452!GO:0044437;vacuolar part;0.00945438665645452!GO:0051318;G1 phase;0.00951684078636277!GO:0008139;nuclear localization sequence binding;0.00969781038426548!GO:0016481;negative regulation of transcription;0.00985348865532397!GO:0042802;identical protein binding;0.010048559940044!GO:0016407;acetyltransferase activity;0.0102161975763478!GO:0008320;protein transmembrane transporter activity;0.0102764664510147!GO:0006519;amino acid and derivative metabolic process;0.010282449477815!GO:0016790;thiolester hydrolase activity;0.0103409139133773!GO:0043241;protein complex disassembly;0.0104123295622401!GO:0006275;regulation of DNA replication;0.0104377885291367!GO:0031903;microbody membrane;0.0104377885291367!GO:0005778;peroxisomal membrane;0.0104377885291367!GO:0040029;regulation of gene expression, epigenetic;0.0104950275311897!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0105184803448335!GO:0006406;mRNA export from nucleus;0.0105309327102438!GO:0004540;ribonuclease activity;0.0106300907662549!GO:0008017;microtubule binding;0.0106417663024995!GO:0043624;cellular protein complex disassembly;0.0107082134606572!GO:0006914;autophagy;0.0107544797530387!GO:0016197;endosome transport;0.0107675550041799!GO:0022884;macromolecule transmembrane transporter activity;0.0108127748528616!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0108127748528616!GO:0007004;telomere maintenance via telomerase;0.011038559046779!GO:0007034;vacuolar transport;0.011245959401516!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.011346085572738!GO:0043414;biopolymer methylation;0.0114323501037132!GO:0015980;energy derivation by oxidation of organic compounds;0.0116155405546989!GO:0005765;lysosomal membrane;0.0119686397288795!GO:0048250;mitochondrial iron ion transport;0.0119972740905993!GO:0016408;C-acyltransferase activity;0.0122825562445387!GO:0008287;protein serine/threonine phosphatase complex;0.0123573515399689!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0123622562989267!GO:0007098;centrosome cycle;0.0128076989914733!GO:0006376;mRNA splice site selection;0.0128645333568309!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0128645333568309!GO:0048037;cofactor binding;0.0129264233150505!GO:0006644;phospholipid metabolic process;0.0130772591250599!GO:0015036;disulfide oxidoreductase activity;0.013187798517629!GO:0043488;regulation of mRNA stability;0.0136088325201338!GO:0043487;regulation of RNA stability;0.0136088325201338!GO:0030145;manganese ion binding;0.0136088325201338!GO:0005832;chaperonin-containing T-complex;0.0138747625021956!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0143402528828074!GO:0004523;ribonuclease H activity;0.0151353004648167!GO:0000209;protein polyubiquitination;0.0152769771307285!GO:0007021;tubulin folding;0.015373115202816!GO:0009889;regulation of biosynthetic process;0.015420500095797!GO:0016023;cytoplasmic membrane-bound vesicle;0.0155285607735533!GO:0030503;regulation of cell redox homeostasis;0.015555624896306!GO:0006266;DNA ligation;0.0157571536262803!GO:0000119;mediator complex;0.0157571536262803!GO:0000731;DNA synthesis during DNA repair;0.015757434342247!GO:0006904;vesicle docking during exocytosis;0.0157692292221915!GO:0045792;negative regulation of cell size;0.0158392253861346!GO:0006595;polyamine metabolic process;0.0163615291797276!GO:0009124;nucleoside monophosphate biosynthetic process;0.0166658932240546!GO:0009123;nucleoside monophosphate metabolic process;0.0166658932240546!GO:0003746;translation elongation factor activity;0.0166658932240546!GO:0006378;mRNA polyadenylation;0.0174601223549872!GO:0000123;histone acetyltransferase complex;0.0176111838257033!GO:0006301;postreplication repair;0.0179115938478628!GO:0008022;protein C-terminus binding;0.0184308666723715!GO:0007346;regulation of progression through mitotic cell cycle;0.0185919694483098!GO:0042809;vitamin D receptor binding;0.0189840631835211!GO:0004402;histone acetyltransferase activity;0.0195881097755624!GO:0004468;lysine N-acetyltransferase activity;0.0195881097755624!GO:0030261;chromosome condensation;0.0196481962537612!GO:0051287;NAD binding;0.0200248994683619!GO:0000792;heterochromatin;0.0200954856655025!GO:0030132;clathrin coat of coated pit;0.0202079159277354!GO:0042602;flavin reductase activity;0.0210620018175146!GO:0008156;negative regulation of DNA replication;0.0211143216919297!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0212213374111254!GO:0005791;rough endoplasmic reticulum;0.0212834040761389!GO:0051320;S phase;0.0215900500988719!GO:0008632;apoptotic program;0.0216706472511401!GO:0022411;cellular component disassembly;0.0219018827972088!GO:0016605;PML body;0.0220072130448697!GO:0031982;vesicle;0.0224388454181482!GO:0005521;lamin binding;0.0226255678275041!GO:0016746;transferase activity, transferring acyl groups;0.022801036547281!GO:0051656;establishment of organelle localization;0.022912265568537!GO:0043022;ribosome binding;0.0229464623008881!GO:0000118;histone deacetylase complex;0.0229498172480462!GO:0030308;negative regulation of cell growth;0.023342884922142!GO:0006278;RNA-dependent DNA replication;0.0234242809088998!GO:0005048;signal sequence binding;0.0234692177409958!GO:0005658;alpha DNA polymerase:primase complex;0.0241619306069113!GO:0008637;apoptotic mitochondrial changes;0.0244535995342782!GO:0031901;early endosome membrane;0.0246141012718799!GO:0006354;RNA elongation;0.0246359233636747!GO:0005881;cytoplasmic microtubule;0.0249288510424085!GO:0006303;double-strand break repair via nonhomologous end joining;0.0250755629930198!GO:0005833;hemoglobin complex;0.0252261057916738!GO:0000777;condensed chromosome kinetochore;0.0252398162503852!GO:0000779;condensed chromosome, pericentric region;0.0252398162503852!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0254063573314915!GO:0051881;regulation of mitochondrial membrane potential;0.0254474386746705!GO:0030496;midbody;0.0258074839166978!GO:0032981;mitochondrial respiratory chain complex I assembly;0.026504452983175!GO:0010257;NADH dehydrogenase complex assembly;0.026504452983175!GO:0033108;mitochondrial respiratory chain complex assembly;0.026504452983175!GO:0044255;cellular lipid metabolic process;0.026968498896739!GO:0045947;negative regulation of translational initiation;0.0270861821418805!GO:0005652;nuclear lamina;0.0270861821418805!GO:0009451;RNA modification;0.0280099189416835!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0281493163785697!GO:0005788;endoplasmic reticulum lumen;0.0286047278385166!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0287291191628771!GO:0045039;protein import into mitochondrial inner membrane;0.0287291191628771!GO:0006355;regulation of transcription, DNA-dependent;0.029040871398715!GO:0004536;deoxyribonuclease activity;0.0290841802895233!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0298234872876706!GO:0031647;regulation of protein stability;0.0303274475758728!GO:0004177;aminopeptidase activity;0.0311179526419487!GO:0000305;response to oxygen radical;0.0311179526419487!GO:0032561;guanyl ribonucleotide binding;0.0312192160564203!GO:0019001;guanyl nucleotide binding;0.0312192160564203!GO:0030137;COPI-coated vesicle;0.0313051938117261!GO:0009116;nucleoside metabolic process;0.0314631760420843!GO:0004418;hydroxymethylbilane synthase activity;0.0316966379166577!GO:0030508;thiol-disulfide exchange intermediate activity;0.0323604657966912!GO:0033170;DNA-protein loading ATPase activity;0.0329972153506139!GO:0003689;DNA clamp loader activity;0.0329972153506139!GO:0000738;DNA catabolic process, exonucleolytic;0.0329972153506139!GO:0042440;pigment metabolic process;0.0330879567109218!GO:0008415;acyltransferase activity;0.0330948017170961!GO:0030176;integral to endoplasmic reticulum membrane;0.0338027665701484!GO:0050000;chromosome localization;0.0339059035973558!GO:0051303;establishment of chromosome localization;0.0339059035973558!GO:0008536;Ran GTPase binding;0.0339398408187092!GO:0009161;ribonucleoside monophosphate metabolic process;0.0339398408187092!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0339398408187092!GO:0030119;AP-type membrane coat adaptor complex;0.0345742780492847!GO:0000339;RNA cap binding;0.0352040108387207!GO:0007096;regulation of exit from mitosis;0.0357351544954675!GO:0010458;exit from mitosis;0.0357351544954675!GO:0051338;regulation of transferase activity;0.0357351544954675!GO:0000086;G2/M transition of mitotic cell cycle;0.0357351544954675!GO:0004096;catalase activity;0.0357351544954675!GO:0042157;lipoprotein metabolic process;0.0361539148014948!GO:0016126;sterol biosynthetic process;0.0361801137295675!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0372115680735473!GO:0006415;translational termination;0.0376092410637099!GO:0008538;proteasome activator activity;0.0377807919640152!GO:0033116;ER-Golgi intermediate compartment membrane;0.0380852702795659!GO:0007076;mitotic chromosome condensation;0.0382173566468455!GO:0000930;gamma-tubulin complex;0.0388147457951917!GO:0042054;histone methyltransferase activity;0.0394409070900918!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0395199052742182!GO:0045502;dynein binding;0.0402715630166111!GO:0035267;NuA4 histone acetyltransferase complex;0.0402946880275562!GO:0031371;ubiquitin conjugating enzyme complex;0.0403712105981097!GO:0007040;lysosome organization and biogenesis;0.04050260139908!GO:0004520;endodeoxyribonuclease activity;0.0410111354880545!GO:0000303;response to superoxide;0.041426290907451!GO:0009308;amine metabolic process;0.0414535056945193!GO:0006007;glucose catabolic process;0.0414746810030246!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0416362676522547!GO:0030131;clathrin adaptor complex;0.042198533718496!GO:0031410;cytoplasmic vesicle;0.0422504616418113!GO:0005777;peroxisome;0.0423087345303704!GO:0042579;microbody;0.0423087345303704!GO:0004519;endonuclease activity;0.0423773954247729!GO:0006740;NADPH regeneration;0.0429897935237367!GO:0006098;pentose-phosphate shunt;0.0429897935237367!GO:0006220;pyrimidine nucleotide metabolic process;0.0429897935237367!GO:0065007;biological regulation;0.0429897935237367!GO:0043065;positive regulation of apoptosis;0.0443581367584987!GO:0000097;sulfur amino acid biosynthetic process;0.0447159778811668!GO:0005784;translocon complex;0.045238279938832!GO:0007243;protein kinase cascade;0.0455115538830202!GO:0031252;leading edge;0.0465571413215837!GO:0004576;oligosaccharyl transferase activity;0.0466997019389723!GO:0051340;regulation of ligase activity;0.0472511746900192!GO:0004853;uroporphyrinogen decarboxylase activity;0.0478338483286063!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0484183258174308 | |||
|sample_id=11932 | |||
|sample_note= | |||
|sample_sex= | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=Buffy coat | |||
|top_motifs=GATA6:7.52841187377;MYB:2.85365330352;STAT5{A,B}:2.67524331462;ALX1:2.53036696492;E2F1..5:2.50586940554;NFY{A,B,C}:2.15739637781;NR6A1:2.00383400359;PBX1:1.89608053785;CDX1,2,4:1.7954571555;YY1:1.7868625378;POU1F1:1.66431094221;FOX{I1,J2}:1.60575024438;OCT4_SOX2{dimer}:1.46546254166;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.24571763544;POU2F1..3:1.23335021467;ELK1,4_GABP{A,B1}:1.19071790845;TLX2:1.08856745523;ZNF143:1.05693139774;HOXA9_MEIS1:0.99931725044;FOX{F1,F2,J1}:0.935872344167;FOXN1:0.872393649834;SOX{8,9,10}:0.856581799237;PPARG:0.847981949256;ZBTB16:0.812292993939;POU3F1..4:0.804317584259;HAND1,2:0.79605438624;GFI1:0.758235542554;NFE2L2:0.711120655056;CUX2:0.707074798135;SREBF1,2:0.695911488678;HOX{A5,B5}:0.681891097955;TOPORS:0.641103623207;CREB1:0.626250311803;PITX1..3:0.580308503406;NR1H4:0.569892979644;NANOG:0.569757272213;NRF1:0.548559329077;NKX2-1,4:0.541990921084;BPTF:0.540787394829;FOX{D1,D2}:0.482738938183;CRX:0.472797557571;RFX2..5_RFXANK_RFXAP:0.443898979202;EVI1:0.425545423961;NFE2:0.41686508416;NR5A1,2:0.385211211442;TGIF1:0.358550613858;ATF5_CREB3:0.352852399701;RBPJ:0.340206146715;FOXP1:0.335814722753;FOXA2:0.317976580974;PAX8:0.286643501372;PAX2:0.279303395847;HBP1_HMGB_SSRP1_UBTF:0.236198450019;FOXP3:0.235118141626;TBP:0.174822835708;FOXQ1:0.172081690808;HMX1:0.162700009469;AR:0.158336409926;NKX3-2:0.150130285343;AIRE:0.143727860532;BREu{core}:0.136833960424;PAX3,7:0.132940309656;ZNF423:0.132332844983;NFIL3:0.109735197017;ZEB1:0.104582293142;IKZF2:0.0771201320963;PDX1:0.0704085202359;RORA:0.0666344182844;SNAI1..3:0.0561316893607;RUNX1..3:0.0278954255603;NKX3-1:-0.0266114995744;PAX6:-0.0625387013954;VSX1,2:-0.0664052607783;ATF4:-0.08356273055;HOX{A6,A7,B6,B7}:-0.0855239996422;ELF1,2,4:-0.0917741106234;NFE2L1:-0.105458607278;ZNF148:-0.115269551774;PAX4:-0.117110455542;PRRX1,2:-0.132067583886;HNF4A_NR2F1,2:-0.141276649988;MEF2{A,B,C,D}:-0.16192513566;ESRRA:-0.170878888845;LMO2:-0.173290179669;SPIB:-0.187832173152;TAL1_TCF{3,4,12}:-0.194491421315;NKX2-2,8:-0.196793867345;TFDP1:-0.205383161569;ARID5B:-0.232520596353;T:-0.247842555394;STAT2,4,6:-0.251967313358;HNF1A:-0.257921648611;TBX4,5:-0.262435811079;NANOG{mouse}:-0.271441449513;IRF1,2:-0.272715204174;LHX3,4:-0.281921314744;HES1:-0.299124024069;SPI1:-0.308082086391;ADNP_IRX_SIX_ZHX:-0.312321050347;MAFB:-0.314418818427;ZNF238:-0.314448734944;STAT1,3:-0.325817425544;SOX5:-0.343380414174;MYOD1:-0.349242262005;CDC5L:-0.351166100407;ATF2:-0.358854365924;NKX6-1,2:-0.365293824296;POU6F1:-0.386100248637;LEF1_TCF7_TCF7L1,2:-0.413010829477;CEBPA,B_DDIT3:-0.41715724818;FOXD3:-0.434669467767;FOXL1:-0.437626035572;FOXO1,3,4:-0.439762184839;TFAP4:-0.442383035439;NFKB1_REL_RELA:-0.452916622907;BACH2:-0.458103217061;IRF7:-0.471229382277;HLF:-0.47279323791;SMAD1..7,9:-0.488892720144;REST:-0.503342536236;RFX1:-0.507647504242;MYBL2:-0.517604666776;FOS_FOS{B,L1}_JUN{B,D}:-0.522254637369;RXRA_VDR{dimer}:-0.523893019572;NFIX:-0.5319363254;ALX4:-0.565766042197;ZNF384:-0.569324626368;DMAP1_NCOR{1,2}_SMARC:-0.571866348905;bHLH_family:-0.58990544786;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.591759088181;ETS1,2:-0.592044167119;TLX1..3_NFIC{dimer}:-0.607348812215;FOSL2:-0.612727744349;DBP:-0.62734857332;NKX2-3_NKX2-5:-0.63466743861;JUN:-0.634969909676;IKZF1:-0.674125851803;ZIC1..3:-0.699349850415;ZFP161:-0.704290938973;UFEwm:-0.724873085663;TP53:-0.73656981567;HOX{A4,D4}:-0.770011829482;ZBTB6:-0.779008895758;PAX1,9:-0.78941680301;MYFfamily:-0.805153759141;KLF4:-0.816144434497;MTF1:-0.842979800977;ONECUT1,2:-0.850363980886;AHR_ARNT_ARNT2:-0.878550295755;FOXM1:-0.924006187314;GLI1..3:-0.925601660231;NR3C1:-0.929020858288;EN1,2:-0.933778642143;SOX17:-0.958627920095;TEF:-0.959332336102;NHLH1,2:-0.962894940427;POU5F1:-1.01216971318;NFATC1..3:-1.04677228232;HSF1,2:-1.05246966914;GZF1:-1.06549794963;XBP1:-1.09944426964;MED-1{core}:-1.14394263149;RREB1:-1.14652498606;SPZ1:-1.14756457334;SRF:-1.17313671038;GTF2I:-1.22343363887;GTF2A1,2:-1.2345342447;TEAD1:-1.26129851462;MAZ:-1.26184104014;GCM1,2:-1.26548319312;SOX2:-1.37786449629;PAX5:-1.39193185549;GATA4:-1.47166304009;ESR1:-1.50838420457;PRDM1:-1.57012713867;MZF1:-1.58449761148;HMGA1,2:-1.59880224606;GFI1B:-1.62277445792;XCPE1{core}:-1.65032004581;TFCP2:-1.67236104405;ATF6:-1.6855900476;TFAP2B:-1.771262138;MTE{core}:-1.86872559263;EBF1:-1.91025083386;HIC1:-1.91067480883;EGR1..3:-1.92543209531;HIF1A:-2.02558207248;SP1:-2.15364471396;PATZ1:-2.17325247336;TFAP2{A,C}:-2.2190623739;RXR{A,B,G}:-2.22108911243;EP300:-2.26625787389 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11932-125I6;search_select_hide=table117:FF:11932-125I6 | |||
}} | }} |
Latest revision as of 18:30, 4 June 2020
Name: | CD34 cells differentiated to erythrocyte lineage, biol_ rep2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13553 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13553
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13553
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0119 |
10 | 10 | 0.018 |
100 | 100 | 0.286 |
101 | 101 | 0.0563 |
102 | 102 | 0.731 |
103 | 103 | 0.28 |
104 | 104 | 0.583 |
105 | 105 | 0.492 |
106 | 106 | 0.99 |
107 | 107 | 0.194 |
108 | 108 | 0.322 |
109 | 109 | 0.025 |
11 | 11 | 0.039 |
110 | 110 | 0.182 |
111 | 111 | 0.271 |
112 | 112 | 0.407 |
113 | 113 | 0.837 |
114 | 114 | 0.276 |
115 | 115 | 0.0632 |
116 | 116 | 0.408 |
117 | 117 | 0.0361 |
118 | 118 | 0.396 |
119 | 119 | 0.841 |
12 | 12 | 0.235 |
120 | 120 | 0.465 |
121 | 121 | 0.696 |
122 | 122 | 0.465 |
123 | 123 | 0.0217 |
124 | 124 | 0.354 |
125 | 125 | 0.129 |
126 | 126 | 0.906 |
127 | 127 | 0.402 |
128 | 128 | 0.768 |
129 | 129 | 0.627 |
13 | 13 | 0.0335 |
130 | 130 | 0.933 |
131 | 131 | 0.787 |
132 | 132 | 0.0923 |
133 | 133 | 0.118 |
134 | 134 | 0.721 |
135 | 135 | 0.772 |
136 | 136 | 0.366 |
137 | 137 | 0.754 |
138 | 138 | 0.957 |
139 | 139 | 0.953 |
14 | 14 | 0.741 |
140 | 140 | 0.468 |
141 | 141 | 0.0767 |
142 | 142 | 0.781 |
143 | 143 | 0.172 |
144 | 144 | 0.288 |
145 | 145 | 0.808 |
146 | 146 | 0.685 |
147 | 147 | 0.106 |
148 | 148 | 0.306 |
149 | 149 | 0.933 |
15 | 15 | 0.0325 |
150 | 150 | 0.933 |
151 | 151 | 0.615 |
152 | 152 | 0.133 |
153 | 153 | 0.525 |
154 | 154 | 0.468 |
155 | 155 | 0.0616 |
156 | 156 | 0.082 |
157 | 157 | 0.322 |
158 | 158 | 0.904 |
159 | 159 | 0.0485 |
16 | 16 | 0.399 |
160 | 160 | 0.62 |
161 | 161 | 0.0913 |
162 | 162 | 0.8 |
163 | 163 | 0.0883 |
164 | 164 | 0.296 |
165 | 165 | 0.157 |
166 | 166 | 0.932 |
167 | 167 | 0.22 |
168 | 168 | 0.822 |
169 | 169 | 0.518 |
17 | 17 | 0.75 |
18 | 18 | 0.512 |
19 | 19 | 0.579 |
2 | 2 | 0.513 |
20 | 20 | 0.186 |
21 | 21 | 0.183 |
22 | 22 | 0.837 |
23 | 23 | 0.37 |
24 | 24 | 0.322 |
25 | 25 | 0.104 |
26 | 26 | 0.125 |
27 | 27 | 0.856 |
28 | 28 | 0.416 |
29 | 29 | 0.0124 |
3 | 3 | 0.19 |
30 | 30 | 0.101 |
31 | 31 | 0.899 |
32 | 32 | 0.255 |
33 | 33 | 0.184 |
34 | 34 | 0.572 |
35 | 35 | 0.22 |
36 | 36 | 0.0215 |
37 | 37 | 0.324 |
38 | 38 | 0.295 |
39 | 39 | 0.643 |
4 | 4 | 0.878 |
40 | 40 | 0.128 |
41 | 41 | 0.438 |
42 | 42 | 0.138 |
43 | 43 | 0.202 |
44 | 44 | 0.39 |
45 | 45 | 0.762 |
46 | 46 | 0.0877 |
47 | 47 | 0.0195 |
48 | 48 | 0.146 |
49 | 49 | 0.0459 |
5 | 5 | 0.257 |
50 | 50 | 0.606 |
51 | 51 | 0.88 |
52 | 52 | 0.662 |
53 | 53 | 0.457 |
54 | 54 | 0.865 |
55 | 55 | 0.869 |
56 | 56 | 0.621 |
57 | 57 | 0.0203 |
58 | 58 | 0.202 |
59 | 59 | 0.895 |
6 | 6 | 0.344 |
60 | 60 | 0.932 |
61 | 61 | 0.772 |
62 | 62 | 0.0604 |
63 | 63 | 0.737 |
64 | 64 | 0.276 |
65 | 65 | 0.726 |
66 | 66 | 0.0175 |
67 | 67 | 0.626 |
68 | 68 | 0.233 |
69 | 69 | 0.243 |
7 | 7 | 0.0627 |
70 | 70 | 0.818 |
71 | 71 | 0.0253 |
72 | 72 | 0.661 |
73 | 73 | 0.821 |
74 | 74 | 0.389 |
75 | 75 | 0.00759 |
76 | 76 | 0.527 |
77 | 77 | 0.999 |
78 | 78 | 0.0109 |
79 | 79 | 0.165 |
8 | 8 | 0.274 |
80 | 80 | 0.909 |
81 | 81 | 0.488 |
82 | 82 | 0.338 |
83 | 83 | 0.243 |
84 | 84 | 0.919 |
85 | 85 | 0.67 |
86 | 86 | 0.688 |
87 | 87 | 0.26 |
88 | 88 | 0.969 |
89 | 89 | 0.937 |
9 | 9 | 0.919 |
90 | 90 | 0.0232 |
91 | 91 | 0.685 |
92 | 92 | 0.823 |
93 | 93 | 0.185 |
94 | 94 | 0.3 |
95 | 95 | 0.0718 |
96 | 96 | 0.115 |
97 | 97 | 0.558 |
98 | 98 | 0.0549 |
99 | 99 | 0.107 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13553
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0011169 human reticulocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000764 (erythroid lineage cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000558 (reticulocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011169 (human reticulocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)