FF:10802-111A1: Difference between revisions

Latest revision as of 15:05, 3 June 2020

Name:	acute myeloid leukemia (FAB M7) cell line:MKPL-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11888
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	66
cell type	myeloid progenitor cell
cell line	MKPL-1
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005576

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11888		CAGE		DRX007821		DRR008693

Accession ID Hg19

Library id		BAM		CTSS
CNhs11888		DRZ000118		DRZ001503

Accession ID Hg38

Library id		BAM		CTSS
CNhs11888		DRZ011468		DRZ012853

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.382
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0546
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0231
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0862
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0.582
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.15
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.373
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.161
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0608
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.428
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0818
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11888

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.044
MA0003.1	MA0003.1	0.941
MA0004.1	MA0004.1	0.0804
MA0006.1	MA0006.1	0.239
MA0007.1	MA0007.1	0.801
MA0009.1	MA0009.1	0.972
MA0014.1	MA0014.1	0.766
MA0017.1	MA0017.1	0.0697
MA0018.2	MA0018.2	0.0215
MA0019.1	MA0019.1	0.191
MA0024.1	MA0024.1	2.02439e-4
MA0025.1	MA0025.1	0.0332
MA0027.1	MA0027.1	0.694
MA0028.1	MA0028.1	8.75986e-9
MA0029.1	MA0029.1	0.00329
MA0030.1	MA0030.1	0.0969
MA0031.1	MA0031.1	0.86
MA0035.2	MA0035.2	1.60159e-18
MA0038.1	MA0038.1	0.7
MA0039.2	MA0039.2	0.387
MA0040.1	MA0040.1	0.233
MA0041.1	MA0041.1	0.667
MA0042.1	MA0042.1	0.591
MA0043.1	MA0043.1	0.00501
MA0046.1	MA0046.1	0.625
MA0047.2	MA0047.2	0.531
MA0048.1	MA0048.1	0.973
MA0050.1	MA0050.1	0.068
MA0051.1	MA0051.1	0.272
MA0052.1	MA0052.1	0.00266
MA0055.1	MA0055.1	0.0417
MA0057.1	MA0057.1	0.316
MA0058.1	MA0058.1	0.0741
MA0059.1	MA0059.1	0.00477
MA0060.1	MA0060.1	6.67712e-6
MA0061.1	MA0061.1	0.393
MA0062.2	MA0062.2	1.33867e-12
MA0065.2	MA0065.2	0.0105
MA0066.1	MA0066.1	0.875
MA0067.1	MA0067.1	0.966
MA0068.1	MA0068.1	0.0359
MA0069.1	MA0069.1	0.0717
MA0070.1	MA0070.1	0.466
MA0071.1	MA0071.1	0.269
MA0072.1	MA0072.1	0.572
MA0073.1	MA0073.1	0.65
MA0074.1	MA0074.1	0.865
MA0076.1	MA0076.1	2.82527e-8
MA0077.1	MA0077.1	0.814
MA0078.1	MA0078.1	0.666
MA0079.2	MA0079.2	0.464
MA0080.2	MA0080.2	8.36494e-5
MA0081.1	MA0081.1	0.0139
MA0083.1	MA0083.1	0.528
MA0084.1	MA0084.1	0.0649
MA0087.1	MA0087.1	0.183
MA0088.1	MA0088.1	0.0109
MA0090.1	MA0090.1	0.0135
MA0091.1	MA0091.1	0.214
MA0092.1	MA0092.1	0.547
MA0093.1	MA0093.1	0.155
MA0099.2	MA0099.2	0.00262
MA0100.1	MA0100.1	6.50057e-4
MA0101.1	MA0101.1	0.393
MA0102.2	MA0102.2	0.0509
MA0103.1	MA0103.1	0.998
MA0104.2	MA0104.2	2.74812e-4
MA0105.1	MA0105.1	0.0893
MA0106.1	MA0106.1	0.538
MA0107.1	MA0107.1	0.0528
MA0108.2	MA0108.2	5.05994e-8
MA0111.1	MA0111.1	0.0536
MA0112.2	MA0112.2	0.321
MA0113.1	MA0113.1	0.688
MA0114.1	MA0114.1	0.0565
MA0115.1	MA0115.1	0.0117
MA0116.1	MA0116.1	0.00437
MA0117.1	MA0117.1	0.788
MA0119.1	MA0119.1	0.78
MA0122.1	MA0122.1	0.753
MA0124.1	MA0124.1	0.301
MA0125.1	MA0125.1	0.481
MA0131.1	MA0131.1	0.379
MA0135.1	MA0135.1	0.523
MA0136.1	MA0136.1	2.10739e-7
MA0137.2	MA0137.2	0.0924
MA0138.2	MA0138.2	0.691
MA0139.1	MA0139.1	0.557
MA0140.1	MA0140.1	1.84307e-18
MA0141.1	MA0141.1	0.303
MA0142.1	MA0142.1	0.837
MA0143.1	MA0143.1	0.145
MA0144.1	MA0144.1	0.646
MA0145.1	MA0145.1	0.521
MA0146.1	MA0146.1	0.0846
MA0147.1	MA0147.1	1.03213e-4
MA0148.1	MA0148.1	0.859
MA0149.1	MA0149.1	0.0169
MA0150.1	MA0150.1	0.714
MA0152.1	MA0152.1	0.323
MA0153.1	MA0153.1	0.972
MA0154.1	MA0154.1	0.191
MA0155.1	MA0155.1	0.819
MA0156.1	MA0156.1	1.47635e-6
MA0157.1	MA0157.1	0.964
MA0159.1	MA0159.1	0.438
MA0160.1	MA0160.1	0.0279
MA0162.1	MA0162.1	0.662
MA0163.1	MA0163.1	7.22236e-8
MA0164.1	MA0164.1	0.776
MA0258.1	MA0258.1	0.0632
MA0259.1	MA0259.1	0.0575

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11888

Novel motif	Logo	P-value
1	1	0.0102
10	10	0.0462
100	100	0.618
101	101	0.416
102	102	0.34
103	103	0.381
104	104	0.847
105	105	0.341
106	106	0.335
107	107	0.465
108	108	0.744
109	109	0.0389
11	11	0.097
110	110	0.541
111	111	0.00271
112	112	0.322
113	113	0.394
114	114	0.0456
115	115	0.073
116	116	0.149
117	117	0.0651
118	118	0.697
119	119	0.282
12	12	0.414
120	120	0.788
121	121	0.484
122	122	0.358
123	123	1.2231e-4
124	124	0.0163
125	125	0.812
126	126	0.322
127	127	0.288
128	128	0.392
129	129	0.186
13	13	0.0216
130	130	0.447
131	131	0.604
132	132	0.121
133	133	0.641
134	134	0.579
135	135	0.467
136	136	0.164
137	137	0.648
138	138	0.908
139	139	0.36
14	14	0.638
140	140	0.9
141	141	0.274
142	142	0.44
143	143	0.781
144	144	0.947
145	145	0.515
146	146	0.69
147	147	0.0562
148	148	0.572
149	149	0.266
15	15	0.125
150	150	0.827
151	151	0.732
152	152	0.102
153	153	0.727
154	154	0.659
155	155	0.241
156	156	0.365
157	157	0.705
158	158	0.187
159	159	0.682
16	16	0.639
160	160	0.588
161	161	0.133
162	162	0.587
163	163	0.157
164	164	0.972
165	165	0.526
166	166	0.227
167	167	0.195
168	168	0.868
169	169	0.75
17	17	0.928
18	18	0.483
19	19	0.576
2	2	0.628
20	20	0.766
21	21	0.788
22	22	0.63
23	23	0.102
24	24	0.699
25	25	0.185
26	26	0.473
27	27	0.614
28	28	0.818
29	29	0.259
3	3	0.435
30	30	0.118
31	31	0.35
32	32	0.028
33	33	0.634
34	34	0.949
35	35	0.142
36	36	0.014
37	37	0.58
38	38	0.493
39	39	0.328
4	4	0.0848
40	40	0.139
41	41	0.79
42	42	0.275
43	43	0.86
44	44	0.722
45	45	0.809
46	46	0.263
47	47	0.116
48	48	0.139
49	49	0.0694
5	5	0.632
50	50	0.861
51	51	0.461
52	52	0.918
53	53	0.104
54	54	0.778
55	55	0.391
56	56	0.564
57	57	0.126
58	58	0.0706
59	59	0.983
6	6	0.372
60	60	0.711
61	61	0.291
62	62	0.0959
63	63	0.962
64	64	0.0685
65	65	0.942
66	66	0.0385
67	67	0.759
68	68	0.201
69	69	0.605
7	7	0.161
70	70	0.807
71	71	0.48
72	72	0.826
73	73	0.546
74	74	0.779
75	75	0.152
76	76	0.404
77	77	0.42
78	78	0.00318
79	79	0.154
8	8	0.38
80	80	0.884
81	81	0.562
82	82	0.487
83	83	0.493
84	84	0.935
85	85	0.377
86	86	0.877
87	87	0.306
88	88	0.756
89	89	0.868
9	9	0.806
90	90	0.273
91	91	0.411
92	92	0.337
93	93	0.979
94	94	0.709
95	95	0.175
96	96	0.0661
97	97	0.663
98	98	0.114
99	99	0.155

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11888

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005576
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX007821;DRR008693;DRZ000118;DRZ001503;DRZ011468;DRZ012853
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54694758..54694805,-!p1@NFE2!2.69!590.74!NFE2;;chr6:135502501..135502546,+!p1@MYB!2.30!236.86!MYB;;chr12:54694807..54694832,-!p3@NFE2!2.23!167.77!NFE2;;chrX:48644984..48645005,+!p1@GATA1!2.19!152.27!GATA1;;chr3:128212033..128212051,-!p1@GATA2!1.98!94.46!GATA2;;chr5:3595977..3595999,+!p1@IRX1!1.97!91.64!IRX1;;chr3:128206762..128206781,-!p2@GATA2!1.87!430.01!GATA2;;chr9:20382446..20382493,-!p4@MLLT3!1.86!71.90!MLLT3;;chr5:3595934..3595957,+!p2@IRX1!1.77!57.80!IRX1;;chr21:39870339..39870443,-!p1@ERG!1.77!57.80!ERG;;chr12:54694653..54694672,-!p2@NFE2!1.76!56.39!NFE2;;chr12:54785074..54785122,-!p2@ZNF385A!1.75!83.18!ZNF385A;;chr5:3595961..3595975,+!p3@IRX1!1.69!47.94!IRX1;;chr5:88178983..88179012,-!p1@MEF2C!1.64!315.81!MEF2C;;chr9:135854091..135854159,+!p1@GFI1B!1.61!39.48!GFI1B;;chr1:61548225..61548299,+!p1@NFIA!1.59!472.31!NFIA;;chr6:135502472..135502489,+!p3@MYB!1.58!36.66!MYB;;chr17:40441354..40441410,+!p2@STAT5A!1.58!36.66!STAT5A;;chr19:12998003..12998021,-!p1@KLF1!1.58!36.66!KLF1;;chr19:13213511..13213545,-!p2@LYL1!1.52!35.25!LYL1;;chr7:50344289..50344323,+!p1@IKZF1!1.52!32.43!IKZF1;;chr12:54785054..54785072,-!p4@ZNF385A!1.51!35.25!ZNF385A;;chr12:54689532..54689551,-!p4@NFE2!1.51!31.02!NFE2;;chr1:92951607..92951661,-!p1@GFI1!1.51!31.02!GFI1;;chr10:94449703..94449718,+!p1@HHEX!1.49!112.79!HHEX;;chr19:58629742..58629787,-!p2@ZSCAN18!1.49!29.61!ZSCAN18;;chr10:94449675..94449694,+!p2@HHEX!1.40!63.44!HHEX;;chr19:9609272..9609297,-!p1@ZNF560!1.40!23.97!ZNF560;;chr1:47696918..47696935,-!p6@TAL1!1.40!23.97!TAL1;;chr1:61548069..61548102,+!p3@NFIA!1.38!54.98!NFIA;;chr4:4291837..4291859,-!p2@LYAR!1.32!63.44!LYAR;;chr20:31350184..31350200,+!p1@DNMT3B!1.32!40.89!DNMT3B;;chr20:50159198..50159299,-!p1@NFATC2!1.31!28.20!NFATC2;;chr12:54694738..54694749,-!p5@NFE2!1.29!18.33!NFE2;;chr5:88179017..88179046,-!p2@MEF2C!1.28!70.49!MEF2C;;chr1:61547894..61547968,+!p2@NFIA!1.28!52.17!NFIA;;chr6:10412392..10412409,-!p4@TFAP2A!1.26!19.74!TFAP2A;;chr21:36421535..36421610,-!p2@RUNX1!1.25!59.21!RUNX1;;chr7:137620650..137620677,-!p3@CREB3L2!1.25!16.92!CREB3L2;;chr6:135502408..135502459,+!p2@MYB!1.23!18.33!MYB;;chr11:65687362..65687436,+!p3@DRAP1!1.22!70.49!DRAP1;;chr12:54689552..54689574,-!p6@NFE2!1.22!15.51!NFE2;;chr2:242556880..242556899,-!p5@THAP4!1.22!15.51!THAP4;;chr2:242556900..242556916,-!p6@THAP4!1.22!15.51!THAP4;;chr7:137620684..137620711,-!p4@CREB3L2!1.22!15.51!CREB3L2;;chr10:98591801..98591841,+!p3@LCOR!1.21!21.15!LCOR;;chr19:58400344..58400364,-!p2@ZNF814!1.19!21.15!ZNF814;;chr19:58545454..58545498,+!p1@ZSCAN1!1.18!14.10!ZSCAN1;;chr17:38020392..38020477,-!p1@IKZF3!1.18!14.10!IKZF3;;chr6:28321909..28321965,-!p3@ZNF323!1.18!14.10!ZNF323;;chr3:128207349..128207386,-!p3@GATA2!1.18!14.10!GATA2;;chr3:63953435..63953499,+!p1@ATXN7!1.18!14.10!ATXN7;;chrX:48645010..48645015,+!p3@GATA1!1.18!14.10!GATA1;;chrX:48644976..48644983,+!p2@GATA1!1.18!14.10!GATA1;;chr19:42636586..42636607,-!p1@POU2F2!1.17!38.07!POU2F2;;chr11:47399947..47399961,-!p3@SPI1!1.14!12.69!SPI1;;chr6:10412576..10412599,-!p5@TFAP2A!1.14!12.69!TFAP2A;;chr19:58400372..58400411,-!p1@ZNF814!1.11!62.03!ZNF814;;chr17:40440481..40440550,+!p1@STAT5A!1.09!81.77!STAT5A;;chr1:92949331..92949377,-!p2@GFI1!1.09!11.28!GFI1;;chr7:50344251..50344288,+!p3@IKZF1!1.09!11.28!IKZF1;;chr6:10412600..10412637,-!p1@TFAP2A!1.08!18.33!TFAP2A;;chr6:21597600..21597664,+!p3@SOX4!1.08!18.33!SOX4;;chr15:57511609..57511651,+!p2@TCF12!1.07!18.33!TCF12;;chr19:11071685..11071798,+!p1@SMARCA4!1.06!297.48!SMARCA4;;chr3:18466787..18466839,-!p1@SATB1!1.06!47.94!SATB1;;chr19:33793430..33793447,-!p1@CEBPA!1.06!45.12!CEBPA;;chr10:94449649..94449664,+!p3@HHEX!1.06!15.51!HHEX;;chr16:88519669..88519726,+!p1@ZFPM1!1.04!90.23!ZFPM1;;chr19:57183114..57183145,-!p1@ZNF835!1.04!11.28!ZNF835;;chr19:13213555..13213568,-!p5@LYL1!1.04!9.87!LYL1;;chr5:88180342..88180365,-!p10@MEF2C!1.04!9.87!MEF2C;;chr9:124976328..124976372,-!p2@LHX6!1.04!9.87!LHX6;;chr11:47399996..47400014,-!p4@SPI1!1.04!9.87!SPI1;;chr11:47400078..47400106,-!p1@SPI1!1.04!9.87!SPI1;;chr12:54691711..54691725,-!p7@NFE2!1.04!9.87!NFE2;;chr13:79177703..79177729,-!p2@POU4F1!1.04!9.87!POU4F1;;chr2:60781201..60781258,-!p3@BCL11A!1.04!9.87!BCL11A;;chr2:145277640..145277771,-!p1@ZEB2!1.02!128.30!ZEB2;;chr19:22817119..22817145,+!p1@ZNF492!1.01!15.51!ZNF492;;chr12:11802753..11802834,+!p2@ETV6!1.00!45.12!ETV6;;chr22:42666593..42666623,-!p@chr22:42666593..42666623,-!1.00!21.15!TCF20;;chr19:47615426..47615439,-!p5@ZC3H4!0.99!21.15!ZC3H4;;chr5:88179195..88179224,-!p3@MEF2C!0.99!14.10!MEF2C;;chr6:126240463..126240489,+!p6@NCOA7!0.99!9.87!NCOA7;;chr19:36909484..36909525,-!p2@ZFP82!0.98!16.92!ZFP82;;chr19:13213465..13213478,-!p7@LYL1!0.98!8.46!LYL1;;chr19:22605136..22605154,-!p1@ZNF98!0.98!8.46!ZNF98;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.46!IKZF1;;chr7:63505799..63505904,+!p1@ZNF727!0.98!8.46!ZNF727;;chr1:47691303..47691319,-!p5@TAL1!0.98!8.46!TAL1;;chr1:47695003..47695042,-!p2@TAL1!0.98!8.46!TAL1;;chr19:37096139..37096170,-!p2@ZNF529!0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DP2;;chr3:48282587..48282603,+!p1@ZNF589!0.75!22.56!ZNF589;;chr19:23433144..23433204,-!p1@ZNF724P!0.75!22.56!ZNF724P;;chr5:76383017..76383068,-!p1@ZBED3!0.75!18.33!ZBED3;;chr19:12203100..12203132,+!p1@ZNF788!0.75!9.87!ZNF788;;chr21:36262032..36262062,-!p5@RUNX1!0.74!12.69!RUNX1;;chr4:87857433..87857472,+!p9@AFF1!0.74!8.46!AFF1;;chr19:58666399..58666438,-!p3@ZNF329!0.74!7.05!ZNF329;;chr19:44764031..44764072,+!p1@ZNF233!0.74!5.64!ZNF233;;chr5:150284461..150284481,-!p4@ZNF300!0.74!5.64!ZNF300;;chr4:57774042..57774114,+!p1@REST!0.73!118.43!REST;;chr12:50479109..50479146,+!p2@SMARCD1!0.73!83.18!SMARCD1;;chr19:37064145..37064216,-!p1@ZNF529!0.73!40.89!ZNF529;;chrX:129402866..129402880,-!p1@ZNF280C!0.73!28.20!ZNF280C;;chr19:37958086..37958150,-!p1@ZNF569!0.73!18.33!ZNF569;;chr7:137563945..137564001,-!p6@CREB3L2!0.73!11.28!CREB3L2;;chr19:21950332..21950356,-!p2@ZNF100!0.73!9.87!ZNF100;;chr19:21265028..21265052,+!p2@ZNF714!0.73!8.46!ZNF714;;chr17:46622114..46622138,-!p4@HOXB2!0.73!7.05!HOXB2;;chr12:56583371..56583394,-!p2@SMARCC2!0.73!7.05!SMARCC2;;chr3:33482052..33482116,-!p2@UBP1!0.73!7.05!UBP1;;chr6:134274354..134274371,+!p1@TBPL1!0.72!126.89!TBPL1;;chr16:67063036..67063088,+!p1@CBFB!0.72!77.54!CBFB;;chr19:56879653..56879743,+!p1@ZNF542!0.72!35.25!ZNF542;;chr19:52408257..52408278,-!p1@ZNF649!0.72!31.02!ZNF649;;chr20:42295713..42295738,+!p2@MYBL2!0.72!28.20!MYBL2;;chr19:20011744..20011770,+!p1@ZNF93!0.72!18.33!ZNF93;;chr7:148823485..148823510,+!p4@ZNF398!0.72!7.05!ZNF398;;chr6:126240442..126240459,+!p4@NCOA7!0.72!5.64!NCOA7;;chr5:88185175..88185197,-!p13@MEF2C!0.72!4.23!MEF2C;;chr6:21597687..21597708,+!p14@SOX4!0.72!4.23!SOX4;;chr7:115670804..115670825,-!p1@TFEC!0.72!4.23!TFEC;;chr8:93115332..93115360,-!p11@RUNX1T1!0.72!4.23!RUNX1T1;;chr15:67391010..67391046,+!p13@SMAD3!0.72!4.23!SMAD3;;chr17:40440446..40440464,+!p5@STAT5A!0.72!4.23!STAT5A;;chr17:41277334..41277348,-!p6@BRCA1!0.72!4.23!BRCA1;;chr17:46655578..46655589,-!p4@HOXB4!0.72!4.23!HOXB4;;chr17:4981570..4981591,+!p3@ZFP3!0.72!4.23!ZFP3;;chr19:13213399..13213414,-!p6@LYL1!0.72!4.23!LYL1;;chr19:38183138..38183157,-!p2@ZNF781!0.72!4.23!ZNF781;;chr19:58545369..58545404,+!p2@ZSCAN1!0.72!4.23!ZSCAN1;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.72!4.23!ZNF177;;chr1:14026722..14026733,+!p5@PRDM2!0.72!4.23!PRDM2;;chr1:227751287..227751298,+!p2@ZNF678!0.72!4.23!ZNF678;;chr2:97203110..97203159,+!p4@ARID5A!0.72!4.23!ARID5A;;chr3:141747950..141748004,-!p7@TFDP2!0.72!4.23!TFDP2;;chr12:108154762..108154776,-!p4@PRDM4!0.72!4.23!PRDM4;;chr19:52901094..52901134,+!p1@ZNF528!0.71!31.02!ZNF528;;chr19:59084647..59084721,-!p1@MZF1!0.71!22.56!MZF1;;chr2:60780753..60780800,-!p1@BCL11A!0.71!22.56!BCL11A;;chr2:60780607..60780624,-!p2@BCL11A!0.71!14.10!BCL11A;;chr8:28748099..28748141,+!p2@HMBOX1!0.71!14.10!HMBOX1;;chr5:138647473..138647476,+!p6@MATR3!0.71!11.28!MATR3;;chr16:68118689..68118733,+!p3@NFATC3!0.71!11.28!NFATC3;;chr7:27135591..27135658,-!p1@HOXA1!0.71!8.46!HOXA1;;chr1:27022578..27022589,+!p5@ARID1A!0.71!7.05!ARID1A;;chr11:6947720..6947812,+!p1@ZNF215!0.71!5.64!ZNF215;;chr5:88179518..88179569,-!p5@MEF2C!0.71!5.64!MEF2C;;chr19:56632592..56632670,-!p1@ZNF787!0.70!102.92!ZNF787;;chr19:9251052..9251079,+!p2@ZNF317!0.70!45.12!ZNF317;;chr7:99070499..99070523,+!p1@ZNF789!0.70!23.97!ZNF789;;chr19:36706055..36706074,+!p3@ZNF146!0.70!21.15!ZNF146;;chr19:36391434..36391450,-!p1@NFKBID!0.70!8.46!NFKBID;;chr14:75988771..75988826,+!p1@BATF!0.70!5.64!BATF;;chr19:45971246..45971265,+!p1@FOSB!0.69!83.18!FOSB;;chr4:57774018..57774040,+!p3@REST!0.69!9.87!REST;;chr17:7388010..7388017,-!p5@ZBTB4!0.69!7.05!ZBTB4;;chr1:226595741..226595818,-!p1@PARP1!0.68!225.58!PARP1;;chr12:51566849..51566927,-!p1@TFCP2!0.68!36.66!TFCP2;;chr15:37392724..37392757,-!p1@MEIS2!0.68!19.74!MEIS2;;chr19:44809143..44809187,-!p1@ZNF235!0.68!12.69!ZNF235;;chr2:172967621..172967637,-!p1@DLX2!0.68!11.28!DLX2;;chr19:52408285..52408310,-!p3@ZNF649!0.68!9.87!ZNF649;;chr19:22018938..22018963,-!p3@ZNF43!0.68!9.87!ZNF43;;chr6:157099159..157099185,+!p6@ARID1B!0.68!7.05!ARID1B;;chr7:137563905..137563916,-!p11@CREB3L2!0.68!5.64!CREB3L2;;chr3:141747441..141747452,-!p4@TFDP2!0.68!5.64!TFDP2;;chr3:40547564..40547616,+!p1@ZNF620!0.68!5.64!ZNF620;;chrX:131623932..131623964,-!p7@MBNL3!0.68!5.64!MBNL3;;chr1:8763463..8763499,-!p6@RERE!0.67!11.28!RERE;;chr19:58570605..58570655,+!p1@ZNF135!0.67!7.05!ZNF135;;chrX:131623982..131624011,-!p6@MBNL3!0.67!5.64!MBNL3;;chr19:44123734..44123796,-!p1@ZNF428!0.66!153.68!ZNF428;;chr17:45973586..45973618,+!p1@SP2!0.66!64.85!SP2;;chr19:11071546..11071624,+!p2@SMARCA4!0.66!22.56!SMARCA4;;chr19:9546227..9546257,-!p2@ZNF266!0.66!21.15!ZNF266;;chr19:53636125..53636178,-!p1@ZNF415!0.66!11.28!ZNF415;;chr19:37341160..37341194,-!p2@ZNF790!0.66!8.46!ZNF790;;chr19:58373157..58373159,+!p4@ZNF587!0.66!7.05!ZNF587;;chr19:53496806..53496848,-!p2@ZNF702P!0.66!5.64!ZNF702P;;chr19:57019215..57019250,+!p1@ZNF471!0.66!5.64!ZNF471;;chrX:84499081..84499115,+!p2@ZNF711!0.66!5.64!ZNF711;;chr17:46622205..46622218,-!p3@HOXB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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aMKPL-1.CNhs11888.10802-111A1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aMKPL-1.CNhs11888.10802-111A1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aMKPL-1.CNhs11888.10802-111A1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aMKPL-1.CNhs11888.10802-111A1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M7%2529%2520cell%2520line%253aMKPL-1.CNhs11888.10802-111A1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10802-111A1
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0101883
+|is_a=EFO:0002091;;FF:0000210;;FF:0101883
+|is_obsolete=
+|library_id=CNhs11888
+|library_id_phase_based=2:CNhs11888
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10802
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10802
 |name=acute myeloid leukemia (FAB M7) cell line:MKPL-1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11888,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=111
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=53.39482
 |sample_age=66
+|sample_category=cell lines
 |sample_cell_catalog=jcrb1325
 |sample_cell_line=MKPL-1
@@ Line 77: / Line 99: @@
 |sample_tissue=blood
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10802-111A1;search_select_hide=table117:FF:10802-111A1
 }}

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FF:10802-111A1: Difference between revisions

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