FF:11313-117C8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005017 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005017 | ||
|accession_numbers=CAGE;DRX008323;DRR009195;DRZ000620;DRZ002005;DRZ011970;DRZ013355 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037193;DRR041559;DRZ007201 | |||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0000255,CL:0000235 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000086 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.12!1326.10!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.56!365.51!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.37!233.77!ZNF385A;;chr11:47279504..47279563,+!p1@NR1H3!2.34!473.86!NR1H3;;chr10:64576105..64576133,-!p1@EGR2!2.13!264.89!EGR2;;chr11:47400062..47400077,-!p2@SPI1!2.11!127.06!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.09!121.68!TFEC;;chr5:71803177..71803255,-!p1@ZNF366!1.77!58.27!ZNF366;;chr10:31288398..31288455,-!p2@ZNF438!1.74!61.78!ZNF438;;chr3:12330560..12330579,+!p1@PPARG!1.74!61.08!PPARG;;chr16:85932760..85932775,+!p1@IRF8!1.66!44.23!IRF8;;chr8:72756063..72756125,-!p1@MSC!1.64!84.48!MSC;;chr7:137620684..137620711,-!p4@CREB3L2!1.43!25.97!CREB3L2;;chr11:47399996..47400014,-!p4@SPI1!1.43!25.74!SPI1;;chr10:64018918..64018936,+!p2@ZNF365!1.42!25.04!ZNF365;;chr11:47400045..47400060,-!p6@SPI1!1.42!25.04!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.41!24.80!SPI1;;chr12:26277956..26277980,-!p1@BHLHE41!1.37!79.33!BHLHE41;;chr3:69788576..69788648,+!p1@MITF!1.36!114.19!MITF;;chr11:47399947..47399961,-!p3@SPI1!1.35!21.53!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.34!119.11!NCOA4;;chr7:137620650..137620677,-!p3@CREB3L2!1.34!20.83!CREB3L2;;chr12:26277817..26277863,-!p2@BHLHE41!1.33!27.14!BHLHE41;;chr19:33793430..33793447,-!p1@CEBPA!1.32!82.60!CEBPA;;chr10:31288370..31288393,-!p3@ZNF438!1.32!20.12!ZNF438;;chr7:128577972..128578047,+!p1@IRF5!1.26!26.91!IRF5;;chr2:68592394..68592405,+!p2@PLEK!1.26!17.32!PLEK;;chr7:50343634..50343717,+!p2@IKZF1!1.22!15.44!IKZF1;;chr1:158985493..158985535,+!p4@IFI16!1.21!22.93!IFI16;;chr7:50344289..50344323,+!p1@IKZF1!1.21!15.21!IKZF1;;chr12:26277929..26277955,-!p3@BHLHE41!1.15!18.72!BHLHE41;;chr12:12764995..12765017,+!p3@CREBL2!1.14!18.02!CREBL2;;chr1:212782094..212782109,+!p1@ATF3!1.10!316.14!ATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.08!147.89!ZEB2;;chr20:39317868..39317884,-!p1@MAFB!1.05!122.85!MAFB;;chr2:145277882..145277967,-!p3@ZEB2!1.05!17.78!ZEB2;;chr6:44233252..44233296,-!p1@NFKBIE!1.03!96.41!NFKBIE;;chr8:102216925..102216938,-!p7@ZNF706!1.03!9.83!ZNF706;;chr16:88752861..88752884,-!p2@SNAI3!1.03!9.83!SNAI3;;chr8:102216978..102217003,-!p4@ZNF706!1.01!9.13!ZNF706;;chr8:72756667..72756736,-!p2@MSC!0.98!13.57!MSC;;chr1:212738742..212738755,+!p2@ATF3!0.97!8.42!ATF3;;chr11:47279491..47279502,+!p6@NR1H3!0.97!8.42!NR1H3;;chr11:47279568..47279577,+!p8@NR1H3!0.97!8.42!NR1H3;;chr14:75988771..75988826,+!p1@BATF!0.93!10.06!BATF;;chr8:72756267..72756296,-!p4@MSC!0.92!11.00!MSC;;chr6:41691289..41691312,-!p9@TFEB!0.92!7.25!TFEB;;chr2:185463247..185463263,+!p1@ZNF804A!0.91!13.10!ZNF804A;;chr20:48807456..48807475,+!p3@CEBPB!0.90!13.81!CEBPB;;chr6:152011654..152011682,+!p1@ESR1!0.90!7.02!ESR1;;chr12:54778351..54778378,-!p6@ZNF385A!0.90!7.02!ZNF385A;;chr12:12764947..12764986,+!p2@CREBL2!0.89!13.81!CREBL2;;chr6:35310395..35310410,+!p2@PPARD!0.87!26.21!PPARD;;chr6:15246200..15246214,+!p2@JARID2!0.87!18.72!JARID2;;chr3:12392932..12392962,+!p8@PPARG!0.86!6.32!PPARG;;chr8:72756637..72756664,-!p3@MSC!0.85!7.02!MSC;;chr6:41673552..41673571,-!p10@TFEB!0.85!6.08!TFEB;;chr8:53373491..53373506,-!p4@ST18!0.85!6.08!ST18;;chr8:72755987..72756002,-!p7@MSC!0.85!6.08!MSC;;chr22:38609570..38609585,+!p6@MAFF!0.85!6.08!MAFF;;chr2:231090433..231090469,+!p1@SP140!0.85!6.08!SP140;;chr2:145275162..145275202,-!p2@ZEB2!0.84!37.21!ZEB2;;chr16:31885093..31885165,+!p1@ZNF267!0.83!94.07!ZNF267;;chr16:88752889..88752921,-!p1@SNAI3!0.82!6.55!SNAI3;;chr22:38597987..38598021,+!p2@MAFF!0.81!35.80!MAFF;;chr5:142782823..142782854,-!p3@NR3C1!0.81!7.96!NR3C1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.81!7.02!L3MBTL4;;chr13:41593425..41593480,-!p1@ELF1!0.79!35.33!ELF1;;chr8:72756213..72756243,-!p5@MSC!0.79!6.79!MSC;;chr1:41157641..41157665,+!p7@NFYC!0.79!6.79!NFYC;;chr20:48807351..48807384,+!p1@CEBPB!0.77!551.31!CEBPB;;chr7:115670792..115670797,-!p2@TFEC!0.77!4.91!TFEC;;chr16:31141328..31141350,+!p2@KAT8!0.77!4.91!KAT8;;chr3:12392909..12392921,+!p11@PPARG!0.77!4.91!PPARG;;chr3:129158715..129158766,-!p2@MBD4!0.75!49.37!MBD4;;chr2:178129358..178129403,-!p5@NFE2L2!0.75!20.36!NFE2L2;;chr6:35310363..35310382,+!p3@PPARD!0.75!18.72!PPARD;;chr15:100106670..100106697,+!p4@MEF2A!0.75!7.96!MEF2A;;chr19:13213954..13214021,-!p4@LYL1!0.75!4.68!LYL1;;chr22:38609587..38609607,+!p7@MAFF!0.75!4.68!MAFF;;chr2:185463158..185463181,+!p2@ZNF804A!0.75!4.68!ZNF804A;;chr1:78050720..78050734,-!p9@ZZZ3!0.75!4.68!ZZZ3;;chr8:72756380..72756427,-!p8@MSC!0.75!4.68!MSC;;chr2:61108695..61108753,+!p1@REL!0.74!34.63!REL;;chr1:38325227..38325246,-!p2@MTF1!0.74!6.32!MTF1;;chr7:50344251..50344288,+!p3@IKZF1!0.74!4.45!IKZF1;;chr22:38609611..38609624,+!p5@MAFF!0.74!4.45!MAFF;;chr1:161736140..161736151,+!p3@ATF6!0.73!15.21!ATF6;;chr19:36391434..36391450,-!p1@NFKBID!0.73!9.13!NFKBID;;chr8:72756023..72756055,-!p6@MSC!0.72!5.38!MSC;;chr7:139762438..139762447,-!p4@PARP12!0.72!4.21!PARP12;;chr3:187455680..187455700,-!p4@BCL6!0.72!4.21!BCL6;;chr10:31288329..31288353,-!p7@ZNF438!0.72!4.21!ZNF438;;chr19:10416315..10416333,-!p1@ZGLP1!0.72!4.21!ZGLP1;;chr16:67063211..67063240,+!p2@CBFB!0.71!22.00!CBFB;;chr1:38325256..38325280,-!p1@MTF1!0.70!27.85!MTF1;;chr13:27998831..27998851,+!p2@GTF3A!0.70!26.91!GTF3A;;chr16:68119324..68119364,+!p1@NFATC3!0.70!20.12!NFATC3;;chr10:51572339..51572376,+!p4@NCOA4!0.70!9.83!NCOA4;;chr7:139762641..139762768,-!p1@PARP12!0.69!61.31!PARP12;;chr6:7108855..7108903,+!p5@RREB1!0.69!9.59!RREB1;;chr2:70142232..70142251,+!p1@MXD1!0.68!24.57!MXD1;;chr12:11802932..11802949,+!p3@ETV6!0.68!7.02!ETV6;;chr3:69811858..69811881,+!p5@MITF!0.68!3.74!MITF;;chr6:144385698..144385742,-!p2@PLAGL1!0.67!4.68!PLAGL1;;chr19:35759824..35759891,+!p1@USF2!0.66!130.11!USF2;;chr2:238600789..238600925,+!p1@LRRFIP1!0.66!84.01!LRRFIP1;;chr6:34204973..34204990,+!p4@HMGA1!0.66!55.46!HMGA1;;chr13:41635029..41635044,-!p4@ELF1!0.66!8.42!ELF1;;chr6:15246217..15246228,+!p3@JARID2!0.66!6.79!JARID2;;chr12:26278008..26278024,-!p4@BHLHE41!0.65!4.21!BHLHE41;;chr4:57522513..57522548,-!p4@HOPX!0.65!3.51!HOPX;;chr20:20348740..20348757,+!p1@INSM1!0.65!3.51!INSM1;;chr19:13213704..13213726,-!p3@LYL1!0.64!4.68!LYL1;;chr3:187463179..187463201,-!p2@BCL6!0.63!15.68!BCL6;;chr1:158985469..158985489,+!p7@IFI16!0.63!3.98!IFI16;;chr2:231090344..231090361,-!p3@SP110!0.63!3.28!SP110;;chr8:53373515..53373526,-!p8@ST18!0.63!3.28!ST18;;chr13:27998854..27998866,+!p3@GTF3A!0.62!7.02!GTF3A;;chr2:145275211..145275220,-!p14@ZEB2!0.62!3.98!ZEB2;;chr3:48282587..48282603,+!p1@ZNF589!0.61!16.15!ZNF589;;chr10:35484804..35484902,+!p2@CREM!0.61!13.81!CREM;;chr19:13213662..13213686,-!p1@LYL1!0.61!4.91!LYL1;;chr1:41157671..41157695,+!p6@NFYC!0.61!4.68!NFYC;;chr3:5021026..5021035,+!p5@BHLHE40!0.61!3.98!BHLHE40;;chr17:45810594..45810608,+!p1@TBX21!0.61!3.04!TBX21;;chr6:106535656..106535682,+!p10@PRDM1!0.61!3.04!PRDM1;;chr12:26277994..26278001,-!p6@BHLHE41!0.61!3.04!BHLHE41;;chr17:40440481..40440550,+!p1@STAT5A!0.60!25.74!STAT5A;;chr2:61108650..61108687,+!p2@REL!0.60!17.32!REL;;chr2:145275228..145275241,-!p11@ZEB2!0.60!3.74!ZEB2;;chr21:36421535..36421610,-!p2@RUNX1!0.59!12.17!RUNX1;;chr19:19516543..19516559,+!p6@GATAD2A!0.59!11.00!GATAD2A;;chr2:97202480..97202499,+!p1@ARID5A!0.58!34.87!ARID5A;;chr6:44233244..44233248,-!p3@NFKBIE!0.58!2.81!NFKBIE;;chr8:72756194..72756208,-!p9@MSC!0.58!2.81!MSC;;chr8:72756251..72756262,-!p12@MSC!0.58!2.81!MSC;;chr9:137217986..137218049,+!p3@RXRA!0.57!9.13!RXRA;;chr1:221052700..221052730,+!p5@HLX!0.57!4.45!HLX;;chr12:11802753..11802834,+!p2@ETV6!0.56!15.68!ETV6;;chr12:53774567..53774658,+!p2@SP1!0.56!15.68!SP1;;chr16:79634624..79634642,-!p1@MAF!0.56!12.64!MAF;;chr7:6676986..6677005,+!p2@ENST00000427912!0.56!8.42!ZNF316;;chr2:208031943..208031978,-!p5@KLF7!0.56!3.74!KLF7;;chr17:40440225..40440268,+!p3@STAT5A!0.56!3.51!STAT5A;;chr11:128563948..128564003,+!p1@FLI1!0.55!38.61!FLI1;;chr1:120190786..120190915,-!p1@ZNF697!0.55!22.70!ZNF697;;chr9:102584159..102584174,+!p2@NR4A3!0.55!5.15!NR4A3;;chr5:142814347..142814358,-!p27@NR3C1!0.55!2.57!NR3C1;;chr5:142814364..142814381,-!p22@NR3C1!0.55!2.57!NR3C1;;chr11:47399920..47399931,-!p7@SPI1!0.55!2.57!SPI1;;chr12:54778444..54778451,-!p8@ZNF385A!0.55!2.57!ZNF385A;;chr3:12392991..12393030,+!p7@PPARG!0.55!2.57!PPARG;;chr1:41157421..41157482,+!p2@NFYC!0.54!35.57!NFYC;;chr20:62462566..62462631,-!p1@ZBTB46!0.54!5.38!ZBTB46;;chr20:48807648..48807671,+!p9@CEBPB!0.54!3.98!CEBPB;;chr10:104155659..104155676,+!p4@NFKB2!0.54!3.28!NFKB2;;chr14:64971438..64971450,+!p2@ZBTB1!0.53!6.55!ZBTB1;;chr7:99156393..99156433,+!p6@ZNF655!0.53!6.32!ZNF655;;chr2:61108771..61108789,+!p4@REL!0.53!3.98!REL;;chr19:50432132..50432217,+!p2@ATF5!0.53!3.04!ATF5;;chr14:68283291..68283323,-!p1@ZFYVE26!0.52!49.37!ZFYVE26;;chr4:106068026..106068084,+!p1@TET2!0.52!26.68!TET2;;chr10:104154246..104154347,+!p3@NFKB2!0.52!18.02!NFKB2;;chr9:102584262..102584276,+!p1@NR4A3!0.52!6.08!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!0.52!5.15!NR4A3;;chr1:158985457..158985468,+!p12@IFI16!0.52!2.34!IFI16;;chr9:73028433..73028444,-!p15@KLF9!0.52!2.34!KLF9;;chr9:128509878..128509902,+!p5@PBX3!0.52!2.34!PBX3;;chr11:65554528..65554546,+!p1@OVOL1!0.52!2.34!OVOL1;;chr12:26277798..26277809,-!p5@BHLHE41!0.52!2.34!BHLHE41;;chrX:129244454..129244488,-!p1@ELF4!0.51!21.06!ELF4;;chr6:41703296..41703367,-!p1@TFEB!0.51!14.51!TFEB;;chr6:7108179..7108199,+!p4@RREB1!0.51!5.38!RREB1;;chr4:144435112..144435176,+!p3@SMARCA5!0.51!5.38!SMARCA5;;chr1:8484007..8484061,-!p13@RERE!0.51!3.04!RERE;;chr13:45010939..45011033,-!p1@TSC22D1!0.50!189.08!TSC22D1;;chr2:178129414..178129517,-!p1@NFE2L2!0.50!113.73!NFE2L2;;chr14:21566731..21566836,-!p1@ZNF219!0.50!30.65!ZNF219;;chr11:13299319..13299424,+!p1@ARNTL!0.50!28.31!ARNTL;;chr19:926001..926046,+!p1@ARID3A!0.50!9.36!ARID3A;;chr9:73028387..73028418,-!p4@KLF9!0.50!5.15!KLF9;;chr19:12902289..12902307,+!p1@JUNB!0.49!646.09!JUNB;;chr2:8822176..8822196,+!p1@ID2!0.49!399.91!ID2;;chrX:131623044..131623089,-!p1@MBNL3!0.49!11.00!MBNL3;;chr2:85197924..85197955,+!p3@KCMF1!0.49!9.83!KCMF1;;chr3:48282536..48282586,+!p2@ZNF589!0.49!7.02!ZNF589;;chr20:4880761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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.12!1326.10!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.56!365.51!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.37!233.77!ZNF385A;;chr11:47279504..47279563,+!p1@NR1H3!2.34!473.86!NR1H3;;chr10:64576105..64576133,-!p1@EGR2!2.13!264.89!EGR2;;chr11:47400062..47400077,-!p2@SPI1!2.11!127.06!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.09!121.68!TFEC;;chr5:71803177..71803255,-!p1@ZNF366!1.77!58.27!ZNF366;;chr10:31288398..31288455,-!p2@ZNF438!1.74!61.78!ZNF438;;chr3:12330560..12330579,+!p1@PPARG!1.74!61.08!PPARG;;chr16:85932760..85932775,+!p1@IRF8!1.66!44.23!IRF8;;chr8:72756063..72756125,-!p1@MSC!1.64!84.48!MSC;;chr7:137620684..137620711,-!p4@CREB3L2!1.43!25.97!CREB3L2;;chr11:47399996..47400014,-!p4@SPI1!1.43!25.74!SPI1;;chr10:64018918..64018936,+!p2@ZNF365!1.42!25.04!ZNF365;;chr11:47400045..47400060,-!p6@SPI1!1.42!25.04!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.41!24.80!SPI1;;chr12:26277956..26277980,-!p1@BHLHE41!1.37!79.33!BHLHE41;;chr3:69788576..69788648,+!p1@MITF!1.36!114.19!MITF;;chr11:47399947..47399961,-!p3@SPI1!1.35!21.53!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.34!119.11!NCOA4;;chr7:137620650..137620677,-!p3@CREB3L2!1.34!20.83!CREB3L2;;chr12:26277817..26277863,-!p2@BHLHE41!1.33!27.14!BHLHE41;;chr19:33793430..33793447,-!p1@CEBPA!1.32!82.60!CEBPA;;chr10:31288370..31288393,-!p3@ZNF438!1.32!20.12!ZNF438;;chr7:128577972..128578047,+!p1@IRF5!1.26!26.91!IRF5;;chr2:68592394..68592405,+!p2@PLEK!1.26!17.32!PLEK;;chr7:50343634..50343717,+!p2@IKZF1!1.22!15.44!IKZF1;;chr1:158985493..158985535,+!p4@IFI16!1.21!22.93!IFI16;;chr7:50344289..50344323,+!p1@IKZF1!1.21!15.21!IKZF1;;chr12:26277929..26277955,-!p3@BHLHE41!1.15!18.72!BHLHE41;;chr12:12764995..12765017,+!p3@CREBL2!1.14!18.02!CREBL2;;chr1:212782094..212782109,+!p1@ATF3!1.10!316.14!ATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.08!147.89!ZEB2;;chr20:39317868..39317884,-!p1@MAFB!1.05!122.85!MAFB;;chr2:145277882..145277967,-!p3@ZEB2!1.05!17.78!ZEB2;;chr6:44233252..44233296,-!p1@NFKBIE!1.03!96.41!NFKBIE;;chr8:102216925..102216938,-!p7@ZNF706!1.03!9.83!ZNF706;;chr16:88752861..88752884,-!p2@SNAI3!1.03!9.83!SNAI3;;chr8:102216978..102217003,-!p4@ZNF706!1.01!9.13!ZNF706;;chr8:72756667..72756736,-!p2@MSC!0.98!13.57!MSC;;chr1:212738742..212738755,+!p2@ATF3!0.97!8.42!ATF3;;chr11:47279491..47279502,+!p6@NR1H3!0.97!8.42!NR1H3;;chr11:47279568..47279577,+!p8@NR1H3!0.97!8.42!NR1H3;;chr14:75988771..75988826,+!p1@BATF!0.93!10.06!BATF;;chr8:72756267..72756296,-!p4@MSC!0.92!11.00!MSC;;chr6:41691289..41691312,-!p9@TFEB!0.92!7.25!TFEB;;chr2:185463247..185463263,+!p1@ZNF804A!0.91!13.10!ZNF804A;;chr20:48807456..48807475,+!p3@CEBPB!0.90!13.81!CEBPB;;chr6:152011654..152011682,+!p1@ESR1!0.90!7.02!ESR1;;chr12:54778351..54778378,-!p6@ZNF385A!0.90!7.02!ZNF385A;;chr12:12764947..12764986,+!p2@CREBL2!0.89!13.81!CREBL2;;chr6:35310395..35310410,+!p2@PPARD!0.87!26.21!PPARD;;chr6:15246200..15246214,+!p2@JARID2!0.87!18.72!JARID2;;chr3:12392932..12392962,+!p8@PPARG!0.86!6.32!PPARG;;chr8:72756637..72756664,-!p3@MSC!0.85!7.02!MSC;;chr6:41673552..41673571,-!p10@TFEB!0.85!6.08!TFEB;;chr8:53373491..53373506,-!p4@ST18!0.85!6.08!ST18;;chr8:72755987..72756002,-!p7@MSC!0.85!6.08!MSC;;chr22:38609570..38609585,+!p6@MAFF!0.85!6.08!MAFF;;chr2:231090433..231090469,+!p1@SP140!0.85!6.08!SP140;;chr2:145275162..145275202,-!p2@ZEB2!0.84!37.21!ZEB2;;chr16:31885093..31885165,+!p1@ZNF267!0.83!94.07!ZNF267;;chr16:88752889..88752921,-!p1@SNAI3!0.82!6.55!SNAI3;;chr22:38597987..38598021,+!p2@MAFF!0.81!35.80!MAFF;;chr5:142782823..142782854,-!p3@NR3C1!0.81!7.96!NR3C1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.81!7.02!L3MBTL4;;chr13:41593425..41593480,-!p1@ELF1!0.79!35.33!ELF1;;chr8:72756213..72756243,-!p5@MSC!0.79!6.79!MSC;;chr1:41157641..41157665,+!p7@NFYC!0.79!6.79!NFYC;;chr20:48807351..48807384,+!p1@CEBPB!0.77!551.31!CEBPB;;chr7:115670792..115670797,-!p2@TFEC!0.77!4.91!TFEC;;chr16:31141328..31141350,+!p2@KAT8!0.77!4.91!KAT8;;chr3:12392909..12392921,+!p11@PPARG!0.77!4.91!PPARG;;chr3:129158715..129158766,-!p2@MBD4!0.75!49.37!MBD4;;chr2:178129358..178129403,-!p5@NFE2L2!0.75!20.36!NFE2L2;;chr6:35310363..35310382,+!p3@PPARD!0.75!18.72!PPARD;;chr15:100106670..100106697,+!p4@MEF2A!0.75!7.96!MEF2A;;chr19:13213954..13214021,-!p4@LYL1!0.75!4.68!LYL1;;chr22:38609587..38609607,+!p7@MAFF!0.75!4.68!MAFF;;chr2:185463158..185463181,+!p2@ZNF804A!0.75!4.68!ZNF804A;;chr1:78050720..78050734,-!p9@ZZZ3!0.75!4.68!ZZZ3;;chr8:72756380..72756427,-!p8@MSC!0.75!4.68!MSC;;chr2:61108695..61108753,+!p1@REL!0.74!34.63!REL;;chr1:38325227..38325246,-!p2@MTF1!0.74!6.32!MTF1;;chr7:50344251..50344288,+!p3@IKZF1!0.74!4.45!IKZF1;;chr22:38609611..38609624,+!p5@MAFF!0.74!4.45!MAFF;;chr1:161736140..161736151,+!p3@ATF6!0.73!15.21!ATF6;;chr19:36391434..36391450,-!p1@NFKBID!0.73!9.13!NFKBID;;chr8:72756023..72756055,-!p6@MSC!0.72!5.38!MSC;;chr7:139762438..139762447,-!p4@PARP12!0.72!4.21!PARP12;;chr3:187455680..187455700,-!p4@BCL6!0.72!4.21!BCL6;;chr10:31288329..31288353,-!p7@ZNF438!0.72!4.21!ZNF438;;chr19:10416315..10416333,-!p1@ZGLP1!0.72!4.21!ZGLP1;;chr16:67063211..67063240,+!p2@CBFB!0.71!22.00!CBFB;;chr1:38325256..38325280,-!p1@MTF1!0.70!27.85!MTF1;;chr13:27998831..27998851,+!p2@GTF3A!0.70!26.91!GTF3A;;chr16:68119324..68119364,+!p1@NFATC3!0.70!20.12!NFATC3;;chr10:51572339..51572376,+!p4@NCOA4!0.70!9.83!NCOA4;;chr7:139762641..139762768,-!p1@PARP12!0.69!61.31!PARP12;;chr6:7108855..7108903,+!p5@RREB1!0.69!9.59!RREB1;;chr2:70142232..70142251,+!p1@MXD1!0.68!24.57!MXD1;;chr12:11802932..11802949,+!p3@ETV6!0.68!7.02!ETV6;;chr3:69811858..69811881,+!p5@MITF!0.68!3.74!MITF;;chr6:144385698..144385742,-!p2@PLAGL1!0.67!4.68!PLAGL1;;chr19:35759824..35759891,+!p1@USF2!0.66!130.11!USF2;;chr2:238600789..238600925,+!p1@LRRFIP1!0.66!84.01!LRRFIP1;;chr6:34204973..34204990,+!p4@HMGA1!0.66!55.46!HMGA1;;chr13:41635029..41635044,-!p4@ELF1!0.66!8.42!ELF1;;chr6:15246217..15246228,+!p3@JARID2!0.66!6.79!JARID2;;chr12:26278008..26278024,-!p4@BHLHE41!0.65!4.21!BHLHE41;;chr4:57522513..57522548,-!p4@HOPX!0.65!3.51!HOPX;;chr20:20348740..20348757,+!p1@INSM1!0.65!3.51!INSM1;;chr19:13213704..13213726,-!p3@LYL1!0.64!4.68!LYL1;;chr3:187463179..187463201,-!p2@BCL6!0.63!15.68!BCL6;;chr1:158985469..158985489,+!p7@IFI16!0.63!3.98!IFI16;;chr2:231090344..231090361,-!p3@SP110!0.63!3.28!SP110;;chr8:53373515..53373526,-!p8@ST18!0.63!3.28!ST18;;chr13:27998854..27998866,+!p3@GTF3A!0.62!7.02!GTF3A;;chr2:145275211..145275220,-!p14@ZEB2!0.62!3.98!ZEB2;;chr3:48282587..48282603,+!p1@ZNF589!0.61!16.15!ZNF589;;chr10:35484804..35484902,+!p2@CREM!0.61!13.81!CREM;;chr19:13213662..13213686,-!p1@LYL1!0.61!4.91!LYL1;;chr1:41157671..41157695,+!p6@NFYC!0.61!4.68!NFYC;;chr3:5021026..5021035,+!p5@BHLHE40!0.61!3.98!BHLHE40;;chr17:45810594..45810608,+!p1@TBX21!0.61!3.04!TBX21;;chr6:106535656..106535682,+!p10@PRDM1!0.61!3.04!PRDM1;;chr12:26277994..26278001,-!p6@BHLHE41!0.61!3.04!BHLHE41;;chr17:40440481..40440550,+!p1@STAT5A!0.60!25.74!STAT5A;;chr2:61108650..61108687,+!p2@REL!0.60!17.32!REL;;chr2:145275228..145275241,-!p11@ZEB2!0.60!3.74!ZEB2;;chr21:36421535..36421610,-!p2@RUNX1!0.59!12.17!RUNX1;;chr19:19516543..19516559,+!p6@GATAD2A!0.59!11.00!GATAD2A;;chr2:97202480..97202499,+!p1@ARID5A!0.58!34.87!ARID5A;;chr6:44233244..44233248,-!p3@NFKBIE!0.58!2.81!NFKBIE;;chr8:72756194..72756208,-!p9@MSC!0.58!2.81!MSC;;chr8:72756251..72756262,-!p12@MSC!0.58!2.81!MSC;;chr9:137217986..137218049,+!p3@RXRA!0.57!9.13!RXRA;;chr1:221052700..221052730,+!p5@HLX!0.57!4.45!HLX;;chr12:11802753..11802834,+!p2@ETV6!0.56!15.68!ETV6;;chr12:53774567..53774658,+!p2@SP1!0.56!15.68!SP1;;chr16:79634624..79634642,-!p1@MAF!0.56!12.64!MAF;;chr7:6676986..6677005,+!p2@ENST00000427912!0.56!8.42!ZNF316;;chr2:208031943..208031978,-!p5@KLF7!0.56!3.74!KLF7;;chr17:40440225..40440268,+!p3@STAT5A!0.56!3.51!STAT5A;;chr11:128563948..128564003,+!p1@FLI1!0.55!38.61!FLI1;;chr1:120190786..120190915,-!p1@ZNF697!0.55!22.70!ZNF697;;chr9:102584159..102584174,+!p2@NR4A3!0.55!5.15!NR4A3;;chr5:142814347..142814358,-!p27@NR3C1!0.55!2.57!NR3C1;;chr5:142814364..142814381,-!p22@NR3C1!0.55!2.57!NR3C1;;chr11:47399920..47399931,-!p7@SPI1!0.55!2.57!SPI1;;chr12:54778444..54778451,-!p8@ZNF385A!0.55!2.57!ZNF385A;;chr3:12392991..12393030,+!p7@PPARG!0.55!2.57!PPARG;;chr1:41157421..41157482,+!p2@NFYC!0.54!35.57!NFYC;;chr20:62462566..62462631,-!p1@ZBTB46!0.54!5.38!ZBTB46;;chr20:48807648..48807671,+!p9@CEBPB!0.54!3.98!CEBPB;;chr10:104155659..104155676,+!p4@NFKB2!0.54!3.28!NFKB2;;chr14:64971438..64971450,+!p2@ZBTB1!0.53!6.55!ZBTB1;;chr7:99156393..99156433,+!p6@ZNF655!0.53!6.32!ZNF655;;chr2:61108771..61108789,+!p4@REL!0.53!3.98!REL;;chr19:50432132..50432217,+!p2@ATF5!0.53!3.04!ATF5;;chr14:68283291..68283323,-!p1@ZFYVE26!0.52!49.37!ZFYVE26;;chr4:106068026..106068084,+!p1@TET2!0.52!26.68!TET2;;chr10:104154246..104154347,+!p3@NFKB2!0.52!18.02!NFKB2;;chr9:102584262..102584276,+!p1@NR4A3!0.52!6.08!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!0.52!5.15!NR4A3;;chr1:158985457..158985468,+!p12@IFI16!0.52!2.34!IFI16;;chr9:73028433..73028444,-!p15@KLF9!0.52!2.34!KLF9;;chr9:128509878..128509902,+!p5@PBX3!0.52!2.34!PBX3;;chr11:65554528..65554546,+!p1@OVOL1!0.52!2.34!OVOL1;;chr12:26277798..26277809,-!p5@BHLHE41!0.52!2.34!BHLHE41;;chrX:129244454..129244488,-!p1@ELF4!0.51!21.06!ELF4;;chr6:41703296..41703367,-!p1@TFEB!0.51!14.51!TFEB;;chr6:7108179..7108199,+!p4@RREB1!0.51!5.38!RREB1;;chr4:144435112..144435176,+!p3@SMARCA5!0.51!5.38!SMARCA5;;chr1:8484007..8484061,-!p13@RERE!0.51!3.04!RERE;;chr13:45010939..45011033,-!p1@TSC22D1!0.50!189.08!TSC22D1;;chr2:178129414..178129517,-!p1@NFE2L2!0.50!113.73!NFE2L2;;chr14:21566731..21566836,-!p1@ZNF219!0.50!30.65!ZNF219;;chr11:13299319..13299424,+!p1@ARNTL!0.50!28.31!ARNTL;;chr19:926001..926046,+!p1@ARID3A!0.50!9.36!ARID3A;;chr9:73028387..73028418,-!p4@KLF9!0.50!5.15!KLF9;;chr19:12902289..12902307,+!p1@JUNB!0.49!646.09!JUNB;;chr2:8822176..8822196,+!p1@ID2!0.49!399.91!ID2;;chrX:131623044..131623089,-!p1@MBNL3!0.49!11.00!MBNL3;;chr2:85197924..85197955,+!p3@KCMF1!0.49!9.83!KCMF1;;chr3:48282536..48282586,+!p2@ZNF589!0.49!7.02!ZNF589;;chr20:4880761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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000235;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor2.CNhs11899.11313-117C8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor2.CNhs11899.11313-117C8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor2.CNhs11899.11313-117C8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor2.CNhs11899.11313-117C8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Macrophage%2520-%2520monocyte%2520derived%252c%2520donor2.CNhs11899.11313-117C8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11313-117C8 | |id=FF:11313-117C8 | ||
|is_a=EFO:0002091;;FF:0000086 | |is_a=EFO:0002091;;FF:0000086 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11899 | |||
|library_id_phase_based=2:CNhs11899 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11313 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.AGTTCC.11313 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11313 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.AGTTCC.11313 | |||
|name=Macrophage - monocyte derived, donor2 | |name=Macrophage - monocyte derived, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11899,LSID834,release010,COMPLETED | |profile_hcage=CNhs11899,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.045658330384768,0,0,0.091316660769536,0,0.00641054909183139,0,-0.0981368132877125,-0.282403560576942,0,0.166728579178217,0,0,0,0,0,0,0,0.421279706377774,0.736084099350701,0,0,0.0134055688297899,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0526863104160746,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.0430885744117231,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697061217969656,0,0,0,0,0,0,0,0,0,0,-0.523171498421834,0.045658330384768,0,0,-0.128559283631191,-0.211197402695869,0.045658330384768,0,0,0,0.068693227940511,-0.047160540031359,0,0,0,0,0,0.045658330384768,0,0,0,0,0,0,0,0,0,0,0,0.18020653067397,0,0,0,0,0.068071592110121,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=3H100-80-10 | |rna_catalog_number=3H100-80-10 | ||
| Line 57: | Line 82: | ||
|rna_tube_id=117C8 | |rna_tube_id=117C8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.AGTTCC | |||
|sample_age=46 | |sample_age=46 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=SREBF1,2:2.14104587042;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.87726625828;FOXP3:1.65981510002;TLX2:1.53840786041;SPI1:1.25861553948;GLI1..3:1.21579712159;NFE2L2:1.20328312668;MYOD1:1.20094264672;NKX2-2,8:1.1580768454;EN1,2:1.13023595108;PPARG:1.05178775938;SPIB:1.0298935766;DMAP1_NCOR{1,2}_SMARC:1.00726320483;ELF1,2,4:0.976053713009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.962190033946;HLF:0.945543977117;ESR1:0.920288082533;ETS1,2:0.908977566682;IRF1,2:0.890172365007;NR6A1:0.812408078454;NFIL3:0.812150771702;IRF7:0.807768327009;RXRA_VDR{dimer}:0.776866156473;MTF1:0.765384070368;CRX:0.702909930161;FOXA2:0.699036495415;PAX2:0.671524292651;NR1H4:0.624494141893;EP300:0.598177092174;TFCP2:0.588885040096;NKX3-2:0.5643243347;AR:0.554057085985;FOSL2:0.551924284778;PAX8:0.533861192502;OCT4_SOX2{dimer}:0.514017368091;PAX5:0.483796596802;SPZ1:0.433930019681;ESRRA:0.390697621284;HES1:0.358681665887;NFE2L1:0.357016683287;STAT5{A,B}:0.349536150623;NANOG{mouse}:0.333690243181;SMAD1..7,9:0.333345722883;TFAP4:0.317201868493;STAT2,4,6:0.297445656269;HSF1,2:0.295557000403;HNF4A_NR2F1,2:0.278131659888;GZF1:0.204477227099;RUNX1..3:0.193824058148;HMX1:0.188554668984;TGIF1:0.183445513338;FOX{F1,F2,J1}:0.171970663551;ZBTB16:0.169521281478;TBP:0.168848914292;ALX4:0.160489496141;FOXO1,3,4:0.147338010077;EBF1:0.146096881586;NFKB1_REL_RELA:0.145207898954;STAT1,3:0.137983052927;NFE2:0.118084377514;NKX2-3_NKX2-5:0.104236320002;LHX3,4:0.075564939203;PRRX1,2:0.0407927236848;IKZF2:0.0289915934972;NFIX:0.0273998174288;FOS_FOS{B,L1}_JUN{B,D}:0.0260827548331;ARID5B:0.023808263515;ALX1:0.0188259449484;ZNF148:0.00456666113165;ELK1,4_GABP{A,B1}:-0.0299070625353;FOXD3:-0.0325502213586;GATA4:-0.0401780720831;PRDM1:-0.0431236669244;FOXN1:-0.0590971513724;CDX1,2,4:-0.0599972184144;HBP1_HMGB_SSRP1_UBTF:-0.0611649147975;CEBPA,B_DDIT3:-0.0768742855874;YY1:-0.0849971822043;MYB:-0.0881505767273;VSX1,2:-0.105530631768;PAX6:-0.119306582218;XCPE1{core}:-0.13261541583;BACH2:-0.140799448257;TAL1_TCF{3,4,12}:-0.144117085822;NRF1:-0.144720501009;HAND1,2:-0.161777382654;NR5A1,2:-0.174286433118;GATA6:-0.176239624113;HOXA9_MEIS1:-0.18015984016;POU3F1..4:-0.181230061365;SP1:-0.196640359157;KLF4:-0.223202484468;ZNF143:-0.224846104542;CUX2:-0.230137439832;MEF2{A,B,C,D}:-0.252717503002;MYFfamily:-0.265861284477;ZEB1:-0.270309851856;NHLH1,2:-0.28018131662;HMGA1,2:-0.285847374568;ZFP161:-0.298241924825;ATF5_CREB3:-0.304598279534;PAX3,7:-0.310080796711;HNF1A:-0.336377162164;RFX2..5_RFXANK_RFXAP:-0.344924350963;ATF2:-0.359183396402;LMO2:-0.370139389427;FOXP1:-0.395091634364;NFY{A,B,C}:-0.401881439584;E2F1..5:-0.409264691575;POU1F1:-0.443799904111;SRF:-0.480679886002;CREB1:-0.486056008002;bHLH_family:-0.486977461346;EGR1..3:-0.489073678064;ATF4:-0.491503135158;HOX{A4,D4}:-0.499515175083;HOX{A5,B5}:-0.517088626889;TEF:-0.529722834097;MYBL2:-0.536507076141;JUN:-0.563631258952;POU5F1:-0.574180520151;SNAI1..3:-0.576610503938;PAX1,9:-0.576807396736;MAFB:-0.579966206738;ONECUT1,2:-0.598881288622;HIF1A:-0.60259079698;ZNF238:-0.607337332015;POU6F1:-0.608988567331;REST:-0.615341852984;SOX2:-0.62120994351;NANOG:-0.626671142052;GFI1:-0.636707282849;ZBTB6:-0.642529352712;XBP1:-0.708989565337;FOX{D1,D2}:-0.732164013225;T:-0.743754978248;TFDP1:-0.758233892264;NKX6-1,2:-0.759768627706;HIC1:-0.784984995399;ATF6:-0.790470322165;TLX1..3_NFIC{dimer}:-0.794261286996;FOX{I1,J2}:-0.801099452034;NFATC1..3:-0.803807553009;MTE{core}:-0.805050860608;NKX3-1:-0.805169201152;MAZ:-0.814691885626;NR3C1:-0.814962570875;UFEwm:-0.837557107843;GFI1B:-0.845956246577;RREB1:-0.880586534758;SOX{8,9,10}:-0.884888029399;TBX4,5:-0.901638722854;ADNP_IRX_SIX_ZHX:-0.904181514788;SOX17:-0.909000355521;GTF2I:-0.911129710773;TFAP2B:-0.913017906797;TEAD1:-0.924043710093;RORA:-0.932738790999;ZNF423:-0.93984759287;PAX4:-0.944151987902;PDX1:-0.961376073199;HOX{A6,A7,B6,B7}:-0.991700711505;TFAP2{A,C}:-1.01095895401;RXR{A,B,G}:-1.01839334853;EVI1:-1.03360473081;PITX1..3:-1.03832625727;IKZF1:-1.03902837579;MED-1{core}:-1.09764643679;TOPORS:-1.09953308511;BREu{core}:-1.12326365877;GTF2A1,2:-1.16140143639;DBP:-1.1714180915;TP53:-1.19494510041;SOX5:-1.19712772185;RFX1:-1.19753350803;PATZ1:-1.23326742877;GCM1,2:-1.25544145306;CDC5L:-1.25704247764;AHR_ARNT_ARNT2:-1.28996679204;ZIC1..3:-1.34079077669;FOXQ1:-1.39173346295;FOXM1:-1.40590600735;PBX1:-1.46763769994;POU2F1..3:-1.48241928658;LEF1_TCF7_TCF7L1,2:-1.48973447813;BPTF:-1.54737652257;MZF1:-1.57839566764;ZNF384:-1.71094708026;RBPJ:-1.78489266008;NKX2-1,4:-1.93237146712;AIRE:-1.98691199504;FOXL1:-2.13260335341 | |top_motifs=SREBF1,2:2.14104587042;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.87726625828;FOXP3:1.65981510002;TLX2:1.53840786041;SPI1:1.25861553948;GLI1..3:1.21579712159;NFE2L2:1.20328312668;MYOD1:1.20094264672;NKX2-2,8:1.1580768454;EN1,2:1.13023595108;PPARG:1.05178775938;SPIB:1.0298935766;DMAP1_NCOR{1,2}_SMARC:1.00726320483;ELF1,2,4:0.976053713009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.962190033946;HLF:0.945543977117;ESR1:0.920288082533;ETS1,2:0.908977566682;IRF1,2:0.890172365007;NR6A1:0.812408078454;NFIL3:0.812150771702;IRF7:0.807768327009;RXRA_VDR{dimer}:0.776866156473;MTF1:0.765384070368;CRX:0.702909930161;FOXA2:0.699036495415;PAX2:0.671524292651;NR1H4:0.624494141893;EP300:0.598177092174;TFCP2:0.588885040096;NKX3-2:0.5643243347;AR:0.554057085985;FOSL2:0.551924284778;PAX8:0.533861192502;OCT4_SOX2{dimer}:0.514017368091;PAX5:0.483796596802;SPZ1:0.433930019681;ESRRA:0.390697621284;HES1:0.358681665887;NFE2L1:0.357016683287;STAT5{A,B}:0.349536150623;NANOG{mouse}:0.333690243181;SMAD1..7,9:0.333345722883;TFAP4:0.317201868493;STAT2,4,6:0.297445656269;HSF1,2:0.295557000403;HNF4A_NR2F1,2:0.278131659888;GZF1:0.204477227099;RUNX1..3:0.193824058148;HMX1:0.188554668984;TGIF1:0.183445513338;FOX{F1,F2,J1}:0.171970663551;ZBTB16:0.169521281478;TBP:0.168848914292;ALX4:0.160489496141;FOXO1,3,4:0.147338010077;EBF1:0.146096881586;NFKB1_REL_RELA:0.145207898954;STAT1,3:0.137983052927;NFE2:0.118084377514;NKX2-3_NKX2-5:0.104236320002;LHX3,4:0.075564939203;PRRX1,2:0.0407927236848;IKZF2:0.0289915934972;NFIX:0.0273998174288;FOS_FOS{B,L1}_JUN{B,D}:0.0260827548331;ARID5B:0.023808263515;ALX1:0.0188259449484;ZNF148:0.00456666113165;ELK1,4_GABP{A,B1}:-0.0299070625353;FOXD3:-0.0325502213586;GATA4:-0.0401780720831;PRDM1:-0.0431236669244;FOXN1:-0.0590971513724;CDX1,2,4:-0.0599972184144;HBP1_HMGB_SSRP1_UBTF:-0.0611649147975;CEBPA,B_DDIT3:-0.0768742855874;YY1:-0.0849971822043;MYB:-0.0881505767273;VSX1,2:-0.105530631768;PAX6:-0.119306582218;XCPE1{core}:-0.13261541583;BACH2:-0.140799448257;TAL1_TCF{3,4,12}:-0.144117085822;NRF1:-0.144720501009;HAND1,2:-0.161777382654;NR5A1,2:-0.174286433118;GATA6:-0.176239624113;HOXA9_MEIS1:-0.18015984016;POU3F1..4:-0.181230061365;SP1:-0.196640359157;KLF4:-0.223202484468;ZNF143:-0.224846104542;CUX2:-0.230137439832;MEF2{A,B,C,D}:-0.252717503002;MYFfamily:-0.265861284477;ZEB1:-0.270309851856;NHLH1,2:-0.28018131662;HMGA1,2:-0.285847374568;ZFP161:-0.298241924825;ATF5_CREB3:-0.304598279534;PAX3,7:-0.310080796711;HNF1A:-0.336377162164;RFX2..5_RFXANK_RFXAP:-0.344924350963;ATF2:-0.359183396402;LMO2:-0.370139389427;FOXP1:-0.395091634364;NFY{A,B,C}:-0.401881439584;E2F1..5:-0.409264691575;POU1F1:-0.443799904111;SRF:-0.480679886002;CREB1:-0.486056008002;bHLH_family:-0.486977461346;EGR1..3:-0.489073678064;ATF4:-0.491503135158;HOX{A4,D4}:-0.499515175083;HOX{A5,B5}:-0.517088626889;TEF:-0.529722834097;MYBL2:-0.536507076141;JUN:-0.563631258952;POU5F1:-0.574180520151;SNAI1..3:-0.576610503938;PAX1,9:-0.576807396736;MAFB:-0.579966206738;ONECUT1,2:-0.598881288622;HIF1A:-0.60259079698;ZNF238:-0.607337332015;POU6F1:-0.608988567331;REST:-0.615341852984;SOX2:-0.62120994351;NANOG:-0.626671142052;GFI1:-0.636707282849;ZBTB6:-0.642529352712;XBP1:-0.708989565337;FOX{D1,D2}:-0.732164013225;T:-0.743754978248;TFDP1:-0.758233892264;NKX6-1,2:-0.759768627706;HIC1:-0.784984995399;ATF6:-0.790470322165;TLX1..3_NFIC{dimer}:-0.794261286996;FOX{I1,J2}:-0.801099452034;NFATC1..3:-0.803807553009;MTE{core}:-0.805050860608;NKX3-1:-0.805169201152;MAZ:-0.814691885626;NR3C1:-0.814962570875;UFEwm:-0.837557107843;GFI1B:-0.845956246577;RREB1:-0.880586534758;SOX{8,9,10}:-0.884888029399;TBX4,5:-0.901638722854;ADNP_IRX_SIX_ZHX:-0.904181514788;SOX17:-0.909000355521;GTF2I:-0.911129710773;TFAP2B:-0.913017906797;TEAD1:-0.924043710093;RORA:-0.932738790999;ZNF423:-0.93984759287;PAX4:-0.944151987902;PDX1:-0.961376073199;HOX{A6,A7,B6,B7}:-0.991700711505;TFAP2{A,C}:-1.01095895401;RXR{A,B,G}:-1.01839334853;EVI1:-1.03360473081;PITX1..3:-1.03832625727;IKZF1:-1.03902837579;MED-1{core}:-1.09764643679;TOPORS:-1.09953308511;BREu{core}:-1.12326365877;GTF2A1,2:-1.16140143639;DBP:-1.1714180915;TP53:-1.19494510041;SOX5:-1.19712772185;RFX1:-1.19753350803;PATZ1:-1.23326742877;GCM1,2:-1.25544145306;CDC5L:-1.25704247764;AHR_ARNT_ARNT2:-1.28996679204;ZIC1..3:-1.34079077669;FOXQ1:-1.39173346295;FOXM1:-1.40590600735;PBX1:-1.46763769994;POU2F1..3:-1.48241928658;LEF1_TCF7_TCF7L1,2:-1.48973447813;BPTF:-1.54737652257;MZF1:-1.57839566764;ZNF384:-1.71094708026;RBPJ:-1.78489266008;NKX2-1,4:-1.93237146712;AIRE:-1.98691199504;FOXL1:-2.13260335341 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11313-117C8;search_select_hide=table117:FF:11313-117C8 | |||
}} | }} | ||
Latest revision as of 16:32, 3 June 2020
| Name: | Macrophage - monocyte derived, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11899 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11899
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11899
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0393 |
| 10 | 10 | 0.0393 |
| 100 | 100 | 0.942 |
| 101 | 101 | 0.534 |
| 102 | 102 | 0.465 |
| 103 | 103 | 0.11 |
| 104 | 104 | 0.373 |
| 105 | 105 | 0.684 |
| 106 | 106 | 0.106 |
| 107 | 107 | 0.477 |
| 108 | 108 | 0.877 |
| 109 | 109 | 0.00362 |
| 11 | 11 | 0.0737 |
| 110 | 110 | 0.12 |
| 111 | 111 | 0.0113 |
| 112 | 112 | 0.0653 |
| 113 | 113 | 0.626 |
| 114 | 114 | 0.0226 |
| 115 | 115 | 0.486 |
| 116 | 116 | 0.535 |
| 117 | 117 | 0.0401 |
| 118 | 118 | 0.285 |
| 119 | 119 | 0.11 |
| 12 | 12 | 0.553 |
| 120 | 120 | 0.823 |
| 121 | 121 | 0.859 |
| 122 | 122 | 0.419 |
| 123 | 123 | 0.682 |
| 124 | 124 | 0.417 |
| 125 | 125 | 0.147 |
| 126 | 126 | 0.268 |
| 127 | 127 | 0.118 |
| 128 | 128 | 0.108 |
| 129 | 129 | 0.294 |
| 13 | 13 | 0.0289 |
| 130 | 130 | 0.494 |
| 131 | 131 | 0.7 |
| 132 | 132 | 0.805 |
| 133 | 133 | 0.449 |
| 134 | 134 | 0.873 |
| 135 | 135 | 0.114 |
| 136 | 136 | 0.301 |
| 137 | 137 | 0.0285 |
| 138 | 138 | 0.387 |
| 139 | 139 | 0.139 |
| 14 | 14 | 0.327 |
| 140 | 140 | 0.74 |
| 141 | 141 | 0.557 |
| 142 | 142 | 0.65 |
| 143 | 143 | 0.295 |
| 144 | 144 | 0.602 |
| 145 | 145 | 0.511 |
| 146 | 146 | 0.927 |
| 147 | 147 | 0.429 |
| 148 | 148 | 0.0157 |
| 149 | 149 | 0.523 |
| 15 | 15 | 0.079 |
| 150 | 150 | 0.663 |
| 151 | 151 | 0.727 |
| 152 | 152 | 0.0764 |
| 153 | 153 | 0.9 |
| 154 | 154 | 0.959 |
| 155 | 155 | 0.574 |
| 156 | 156 | 0.595 |
| 157 | 157 | 0.745 |
| 158 | 158 | 0.433 |
| 159 | 159 | 0.261 |
| 16 | 16 | 0.144 |
| 160 | 160 | 0.464 |
| 161 | 161 | 0.644 |
| 162 | 162 | 0.39 |
| 163 | 163 | 0.808 |
| 164 | 164 | 0.257 |
| 165 | 165 | 0.326 |
| 166 | 166 | 0.884 |
| 167 | 167 | 0.614 |
| 168 | 168 | 0.486 |
| 169 | 169 | 0.00262 |
| 17 | 17 | 0.184 |
| 18 | 18 | 0.205 |
| 19 | 19 | 0.211 |
| 2 | 2 | 0.81 |
| 20 | 20 | 0.935 |
| 21 | 21 | 0.267 |
| 22 | 22 | 0.118 |
| 23 | 23 | 0.201 |
| 24 | 24 | 0.014 |
| 25 | 25 | 0.438 |
| 26 | 26 | 0.133 |
| 27 | 27 | 0.252 |
| 28 | 28 | 0.342 |
| 29 | 29 | 0.346 |
| 3 | 3 | 0.071 |
| 30 | 30 | 0.945 |
| 31 | 31 | 0.792 |
| 32 | 32 | 0.864 |
| 33 | 33 | 0.232 |
| 34 | 34 | 0.306 |
| 35 | 35 | 0.738 |
| 36 | 36 | 0.148 |
| 37 | 37 | 0.127 |
| 38 | 38 | 0.067 |
| 39 | 39 | 0.868 |
| 4 | 4 | 0.688 |
| 40 | 40 | 0.0598 |
| 41 | 41 | 0.0273 |
| 42 | 42 | 0.651 |
| 43 | 43 | 0.0804 |
| 44 | 44 | 0.0777 |
| 45 | 45 | 0.61 |
| 46 | 46 | 0.212 |
| 47 | 47 | 0.248 |
| 48 | 48 | 0.343 |
| 49 | 49 | 0.232 |
| 5 | 5 | 0.281 |
| 50 | 50 | 0.922 |
| 51 | 51 | 0.549 |
| 52 | 52 | 0.364 |
| 53 | 53 | 0.415 |
| 54 | 54 | 0.353 |
| 55 | 55 | 0.0817 |
| 56 | 56 | 0.564 |
| 57 | 57 | 0.757 |
| 58 | 58 | 0.0987 |
| 59 | 59 | 0.0753 |
| 6 | 6 | 0.381 |
| 60 | 60 | 0.117 |
| 61 | 61 | 0.369 |
| 62 | 62 | 0.0502 |
| 63 | 63 | 0.442 |
| 64 | 64 | 0.321 |
| 65 | 65 | 0.0605 |
| 66 | 66 | 0.958 |
| 67 | 67 | 0.301 |
| 68 | 68 | 0.162 |
| 69 | 69 | 0.67 |
| 7 | 7 | 0.136 |
| 70 | 70 | 0.0904 |
| 71 | 71 | 0.0349 |
| 72 | 72 | 0.241 |
| 73 | 73 | 0.0137 |
| 74 | 74 | 0.917 |
| 75 | 75 | 0.0827 |
| 76 | 76 | 0.42 |
| 77 | 77 | 0.248 |
| 78 | 78 | 0.0673 |
| 79 | 79 | 0.785 |
| 8 | 8 | 0.19 |
| 80 | 80 | 0.312 |
| 81 | 81 | 0.272 |
| 82 | 82 | 0.215 |
| 83 | 83 | 0.27 |
| 84 | 84 | 0.648 |
| 85 | 85 | 0.0394 |
| 86 | 86 | 0.116 |
| 87 | 87 | 0.0304 |
| 88 | 88 | 0.295 |
| 89 | 89 | 0.0552 |
| 9 | 9 | 0.269 |
| 90 | 90 | 0.04 |
| 91 | 91 | 0.861 |
| 92 | 92 | 0.18 |
| 93 | 93 | 0.617 |
| 94 | 94 | 0.12 |
| 95 | 95 | 0.0661 |
| 96 | 96 | 0.149 |
| 97 | 97 | 0.84 |
| 98 | 98 | 0.604 |
| 99 | 99 | 0.691 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11899
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000086 human macrophage sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000235 (macrophage)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000086 (human macrophage sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
